BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6112
         (374 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WIN|A Chain A, Solution Structure Of The Band 7 Domain Of The Mouse
           Flotillin 2 Protein
          Length = 143

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 58/76 (76%)

Query: 106 EIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDI 165
           +I+N+ L TLEGH R+I+G+++VE IY+DR +F+K V +VA+ D+  MGI ++S+T+KD+
Sbjct: 63  DIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDV 122

Query: 166 RDDEGYLKSLGMARTA 181
            D   YL SLG  +T+
Sbjct: 123 YDKVDYLSSLGKTQTS 138


>pdb|1KL7|A Chain A, Crystal Structure Of Threonine Synthase From Yeast
 pdb|1KL7|B Chain B, Crystal Structure Of Threonine Synthase From Yeast
          Length = 514

 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 6   DAVTP---NLCWSQEE----EPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTK 58
           D VTP   N+   +E     E   GP Y AFK +       +  YF        P  + K
Sbjct: 94  DEVTPLVQNVTGDKENLHILELFHGPTY-AFKDVALQFVGNLFEYFLQRTNANLPEGEKK 152

Query: 59  RVTMVSSGSGELGAAKLTG 77
           ++T+V + SG+ G+A + G
Sbjct: 153 QITVVGATSGDTGSAAIYG 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.344 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,633,739
Number of Sequences: 62578
Number of extensions: 238199
Number of successful extensions: 435
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 3
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)