Query psy6112
Match_columns 374
No_of_seqs 231 out of 1763
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:55:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2668|consensus 100.0 7.5E-63 1.6E-67 463.9 36.8 357 4-373 1-362 (428)
2 COG2268 Uncharacterized protei 100.0 4.7E-43 1E-47 353.0 39.3 365 1-374 31-468 (548)
3 cd03405 Band_7_HflC Band_7_Hfl 100.0 1.5E-29 3.3E-34 237.4 25.7 211 6-240 2-216 (242)
4 PRK11029 FtsH protease regulat 100.0 1.8E-29 4E-34 246.1 25.2 215 3-240 18-281 (334)
5 cd03407 Band_7_4 A subgroup of 100.0 1.6E-29 3.5E-34 240.3 23.5 173 24-209 8-183 (262)
6 TIGR01932 hflC HflC protein. H 100.0 9.5E-29 2.1E-33 241.0 25.8 213 3-237 18-268 (317)
7 cd03404 Band_7_HflK Band_7_Hfl 100.0 1.2E-27 2.7E-32 227.7 26.2 165 3-183 13-190 (266)
8 cd03403 Band_7_stomatin_like B 100.0 1.3E-27 2.7E-32 220.4 22.1 181 8-209 1-184 (215)
9 cd03406 Band_7_3 A subgroup of 100.0 9E-27 2E-31 222.2 25.8 190 3-209 3-206 (280)
10 TIGR01933 hflK HflK protein. H 100.0 1.1E-26 2.3E-31 220.8 24.3 207 5-238 1-211 (261)
11 KOG2620|consensus 99.9 9.7E-28 2.1E-32 219.6 10.4 200 24-243 21-224 (301)
12 PRK10930 FtsH protease regulat 99.9 4.2E-25 9E-30 221.2 23.5 206 3-236 95-305 (419)
13 cd03401 Band_7_prohibitin Band 99.9 2.5E-25 5.5E-30 202.2 19.4 184 5-207 2-193 (196)
14 cd03402 Band_7_2 A subgroup of 99.9 5.6E-25 1.2E-29 203.7 16.9 170 5-196 2-181 (219)
15 COG0330 HflC Membrane protease 99.9 2.9E-24 6.3E-29 207.0 21.3 195 6-227 22-224 (291)
16 PF01145 Band_7: SPFH domain / 99.9 5E-23 1.1E-27 183.1 14.9 173 7-195 2-178 (179)
17 smart00244 PHB prohibitin homo 99.9 4.5E-22 9.8E-27 174.0 16.4 156 4-178 2-159 (160)
18 KOG2621|consensus 99.9 3.5E-22 7.5E-27 185.2 14.4 161 26-199 69-232 (288)
19 cd03399 Band_7_flotillin Band_ 99.8 7.8E-20 1.7E-24 155.5 13.7 124 50-178 2-127 (128)
20 cd03408 Band_7_5 A subgroup of 99.7 2.4E-16 5.3E-21 144.2 14.9 165 6-178 17-206 (207)
21 cd03400 Band_7_1 A subgroup of 99.5 1.1E-13 2.4E-18 116.9 11.8 100 74-178 23-123 (124)
22 KOG3090|consensus 99.4 5.8E-12 1.3E-16 113.8 15.2 171 26-209 53-231 (290)
23 cd02106 Band_7 The band 7 doma 99.3 7.6E-11 1.7E-15 97.2 13.6 99 74-179 23-121 (121)
24 KOG3083|consensus 99.3 2E-11 4.3E-16 110.3 9.6 178 21-209 38-220 (271)
25 KOG2668|consensus 99.2 1.3E-09 2.9E-14 104.3 20.4 221 102-360 120-365 (428)
26 KOG2962|consensus 98.8 3.5E-07 7.5E-12 83.5 16.3 206 29-247 41-260 (322)
27 PF13421 Band_7_1: SPFH domain 98.6 3.3E-06 7.2E-11 78.0 18.0 158 8-178 19-206 (211)
28 COG2268 Uncharacterized protei 98.4 4E-05 8.8E-10 78.9 21.8 85 103-204 163-251 (548)
29 PTZ00491 major vault protein; 98.3 0.0015 3.3E-08 70.3 31.4 159 6-178 465-652 (850)
30 COG4260 Membrane protease subu 97.4 0.0032 7E-08 59.6 12.4 134 42-179 91-234 (345)
31 cd03405 Band_7_HflC Band_7_Hfl 97.0 0.0043 9.3E-08 58.1 9.3 48 316-363 182-229 (242)
32 TIGR01933 hflK HflK protein. H 96.9 0.0072 1.6E-07 57.4 10.5 63 308-370 171-233 (261)
33 cd03407 Band_7_4 A subgroup of 96.6 0.014 3E-07 55.6 10.1 54 304-357 161-214 (262)
34 TIGR01932 hflC HflC protein. H 96.5 0.015 3.2E-07 57.1 9.8 55 316-370 237-291 (317)
35 PRK11029 FtsH protease regulat 96.3 0.026 5.7E-07 55.7 10.0 57 307-363 238-294 (334)
36 PRK10930 FtsH protease regulat 94.5 0.28 6E-06 50.0 10.4 64 308-371 267-330 (419)
37 cd03404 Band_7_HflK Band_7_Hfl 92.3 0.73 1.6E-05 43.7 8.7 70 304-373 194-263 (266)
38 KOG2620|consensus 91.6 1.6 3.6E-05 41.3 9.8 67 296-362 178-244 (301)
39 PRK01558 V-type ATP synthase s 89.8 2.2 4.8E-05 39.0 8.9 47 298-344 20-66 (198)
40 PRK13454 F0F1 ATP synthase sub 86.1 25 0.00054 31.5 14.5 42 331-372 119-162 (181)
41 PRK01558 V-type ATP synthase s 86.0 13 0.00028 33.9 11.5 40 308-347 19-58 (198)
42 COG0330 HflC Membrane protease 85.9 2.8 6.1E-05 40.2 7.5 15 344-358 230-244 (291)
43 PTZ00121 MAEBL; Provisional 84.2 96 0.0021 36.6 25.1 9 6-14 908-916 (2084)
44 PRK09174 F0F1 ATP synthase sub 84.0 35 0.00075 31.4 14.5 41 321-363 133-173 (204)
45 TIGR03321 alt_F1F0_F0_B altern 83.7 39 0.00084 31.8 14.0 64 310-373 85-158 (246)
46 PRK14474 F0F1 ATP synthase sub 83.3 42 0.0009 31.8 14.0 66 308-373 83-158 (250)
47 PTZ00491 major vault protein; 83.1 82 0.0018 35.0 17.6 30 7-42 379-408 (850)
48 PTZ00121 MAEBL; Provisional 80.8 1.3E+02 0.0028 35.7 25.1 11 19-29 914-924 (2084)
49 KOG2962|consensus 78.3 18 0.00038 33.9 9.1 19 296-314 256-274 (322)
50 PF12127 YdfA_immunity: SigmaW 77.5 57 0.0012 31.5 12.4 68 98-170 156-224 (316)
51 COG2811 NtpF Archaeal/vacuolar 77.3 40 0.00086 27.8 10.6 22 331-352 67-88 (108)
52 PRK01005 V-type ATP synthase s 71.7 28 0.00062 32.0 8.9 41 306-346 33-73 (207)
53 PRK14474 F0F1 ATP synthase sub 70.4 98 0.0021 29.3 14.9 38 324-363 88-125 (250)
54 CHL00118 atpG ATP synthase CF0 69.5 75 0.0016 27.6 14.5 23 340-362 119-141 (156)
55 PF11978 MVP_shoulder: Shoulde 68.4 52 0.0011 27.5 8.8 57 111-167 52-116 (118)
56 cd03403 Band_7_stomatin_like B 67.9 30 0.00066 31.3 8.4 6 165-170 69-74 (215)
57 PRK14475 F0F1 ATP synthase sub 66.8 90 0.002 27.4 13.7 7 364-370 154-160 (167)
58 PRK01005 V-type ATP synthase s 66.3 1.1E+02 0.0024 28.2 11.8 57 305-361 43-102 (207)
59 PRK13453 F0F1 ATP synthase sub 66.1 95 0.0021 27.5 14.3 17 357-373 155-171 (173)
60 PRK08475 F0F1 ATP synthase sub 64.3 1E+02 0.0022 27.2 12.4 19 317-335 109-127 (167)
61 PRK02292 V-type ATP synthase s 63.2 45 0.00098 29.8 8.4 19 312-330 28-46 (188)
62 PRK06231 F0F1 ATP synthase sub 61.4 1.3E+02 0.0029 27.5 14.3 18 356-373 184-201 (205)
63 TIGR03321 alt_F1F0_F0_B altern 60.8 1.5E+02 0.0032 27.8 14.4 37 322-360 86-122 (246)
64 PRK13461 F0F1 ATP synthase sub 60.7 1.1E+02 0.0024 26.4 14.3 19 355-373 140-158 (159)
65 PRK01194 V-type ATP synthase s 60.5 50 0.0011 29.8 8.1 7 315-321 31-37 (185)
66 PRK13460 F0F1 ATP synthase sub 58.8 1.3E+02 0.0028 26.5 14.3 19 355-373 151-169 (173)
67 PRK02292 V-type ATP synthase s 58.1 47 0.001 29.7 7.5 38 307-344 12-49 (188)
68 PRK13428 F0F1 ATP synthase sub 57.7 2.3E+02 0.0051 29.2 14.2 15 359-373 141-155 (445)
69 PRK13665 hypothetical protein; 56.1 1.2E+02 0.0026 29.2 9.9 87 71-170 141-229 (316)
70 cd03401 Band_7_prohibitin Band 54.3 25 0.00053 31.4 5.1 11 323-333 183-193 (196)
71 COG1580 FliL Flagellar basal b 53.6 1.6E+02 0.0034 26.0 9.8 49 115-164 105-155 (159)
72 PRK14472 F0F1 ATP synthase sub 52.6 1.6E+02 0.0036 25.9 13.8 10 363-372 161-170 (175)
73 PRK14473 F0F1 ATP synthase sub 51.8 1.6E+02 0.0035 25.6 14.3 17 357-373 145-161 (164)
74 PRK07352 F0F1 ATP synthase sub 50.7 1.8E+02 0.0038 25.7 14.3 27 313-339 102-128 (174)
75 PRK14475 F0F1 ATP synthase sub 50.2 1.8E+02 0.0038 25.5 13.6 17 344-360 111-127 (167)
76 PRK13665 hypothetical protein; 50.0 58 0.0013 31.3 6.8 28 331-358 264-292 (316)
77 PF12742 Gryzun-like: Gryzun, 50.0 17 0.00038 26.3 2.6 29 8-43 12-40 (57)
78 PRK06568 F0F1 ATP synthase sub 49.6 1.8E+02 0.0039 25.5 13.8 26 337-362 98-123 (154)
79 PRK08404 V-type ATP synthase s 49.3 1.4E+02 0.0031 24.2 10.3 24 315-338 43-66 (103)
80 CHL00019 atpF ATP synthase CF0 49.1 1.9E+02 0.0042 25.7 13.6 19 317-335 111-129 (184)
81 PF12127 YdfA_immunity: SigmaW 48.7 46 0.001 32.0 6.0 29 330-358 258-287 (316)
82 PRK13460 F0F1 ATP synthase sub 48.6 1.9E+02 0.0041 25.5 14.4 8 350-357 123-130 (173)
83 CHL00118 atpG ATP synthase CF0 46.5 1.9E+02 0.0042 25.0 11.0 28 313-340 105-132 (156)
84 PRK13454 F0F1 ATP synthase sub 46.4 2.2E+02 0.0047 25.4 11.6 19 315-333 116-134 (181)
85 PRK09098 type III secretion sy 41.5 1.9E+02 0.004 27.1 8.9 28 310-337 49-76 (233)
86 PRK08404 V-type ATP synthase s 41.4 1.9E+02 0.0041 23.4 9.5 31 297-327 10-40 (103)
87 PF03748 FliL: Flagellar basal 40.1 1.2E+02 0.0026 23.6 6.5 45 118-164 49-95 (99)
88 PRK09174 F0F1 ATP synthase sub 39.3 3E+02 0.0066 25.1 11.8 17 318-334 141-157 (204)
89 PRK09098 type III secretion sy 39.3 3.3E+02 0.0071 25.5 10.9 15 316-330 66-80 (233)
90 PRK13455 F0F1 ATP synthase sub 38.7 2.8E+02 0.0061 24.6 13.7 11 362-372 169-179 (184)
91 PRK07353 F0F1 ATP synthase sub 36.6 2.5E+02 0.0055 23.5 14.6 40 322-363 86-125 (140)
92 PRK03963 V-type ATP synthase s 35.5 3.2E+02 0.0069 24.4 9.3 57 299-355 5-65 (198)
93 PRK14471 F0F1 ATP synthase sub 35.2 3E+02 0.0065 23.9 14.5 13 361-373 150-162 (164)
94 PF06188 HrpE: HrpE/YscL/FliH 33.7 3.6E+02 0.0078 24.3 11.7 18 312-329 42-59 (191)
95 PRK13461 F0F1 ATP synthase sub 33.5 3.1E+02 0.0068 23.6 13.8 13 319-331 94-106 (159)
96 PF03179 V-ATPase_G: Vacuolar 32.8 2.6E+02 0.0056 22.4 9.8 16 354-370 84-99 (105)
97 PRK08475 F0F1 ATP synthase sub 32.3 3.5E+02 0.0076 23.8 14.6 41 324-364 105-147 (167)
98 cd03406 Band_7_3 A subgroup of 31.4 3.5E+02 0.0075 26.1 9.2 20 296-315 238-257 (280)
99 PRK09173 F0F1 ATP synthase sub 30.4 3.5E+02 0.0077 23.3 13.5 18 356-373 138-155 (159)
100 PRK08476 F0F1 ATP synthase sub 29.2 3.6E+02 0.0078 22.9 14.4 24 318-341 84-107 (141)
101 PRK07718 fliL flagellar basal 28.9 2.4E+02 0.0051 24.2 6.9 43 120-164 94-138 (142)
102 PF06188 HrpE: HrpE/YscL/FliH 26.8 4.7E+02 0.01 23.5 10.6 26 315-340 34-59 (191)
103 PF05282 AAR2: AAR2 protein; 25.8 39 0.00085 33.6 1.7 21 21-42 25-45 (362)
104 TIGR01144 ATP_synt_b ATP synth 25.4 4.1E+02 0.0089 22.4 14.2 110 263-372 25-147 (147)
105 PRK07352 F0F1 ATP synthase sub 25.1 4.7E+02 0.01 22.9 14.4 9 364-372 163-171 (174)
106 COG0711 AtpF F0F1-type ATP syn 24.8 4.7E+02 0.01 22.8 14.5 9 364-372 150-158 (161)
107 KOG3088|consensus 23.9 1.1E+02 0.0023 29.8 4.1 25 267-291 67-91 (313)
108 PRK09173 F0F1 ATP synthase sub 22.9 4.9E+02 0.011 22.3 14.0 18 344-361 103-120 (159)
109 PRK05759 F0F1 ATP synthase sub 22.5 4.8E+02 0.01 22.1 14.2 110 263-372 34-156 (156)
110 PF00430 ATP-synt_B: ATP synth 22.2 4.3E+02 0.0094 21.5 10.1 28 335-362 91-118 (132)
111 PF12997 DUF3881: Domain of un 20.8 57 0.0012 31.5 1.6 43 121-163 180-226 (283)
112 KOG0994|consensus 20.8 1.4E+03 0.031 27.0 24.3 21 95-115 1479-1502(1758)
113 PRK06654 fliL flagellar basal 20.3 2.7E+02 0.0057 25.2 5.7 42 120-164 134-175 (181)
114 PF14931 IFT20: Intraflagellar 20.1 4E+02 0.0086 22.3 6.4 62 75-137 3-80 (120)
No 1
>KOG2668|consensus
Probab=100.00 E-value=7.5e-63 Score=463.94 Aligned_cols=357 Identities=44% Similarity=0.558 Sum_probs=335.3
Q ss_pred ceeecCCCceEeecCCCcccCcCCcceEEecCCceEEEcccceeEEeccCccccccee-eecCCCCccccceEEEEEEEE
Q psy6112 4 FMDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVT-MVSSGSGELGAAKLTGEILTI 82 (374)
Q Consensus 4 ~~~k~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~-~~~s~~~~it~~~v~vd~~~~ 82 (374)
.|+-|+||+||+ ++| ||-....+-+|. |+||| +.+.++|+..+++.+.. .+.+.+++ +++|.++++
T Consensus 1 ~f~~~~~~~~l~-----itg--~g~~~~~lv~~~-wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegv----P~~vtgVaq 67 (428)
T KOG2668|consen 1 MFKVAGASQYLA-----ITG--GGIEDIKLVKKS-WVFPW-QQCTVFDVSPMTLTFKVENVMTSEGV----PFVVTGVAQ 67 (428)
T ss_pred CCccCCccceEE-----eec--ccccCceecccc-eeeee-eeeeEEeecceeeeeecchhhcccCC----ceEeeeeEE
Confidence 478899999999 999 777677777775 99999 99999997776654433 23333333 788888998
Q ss_pred Eeec--CchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEE
Q psy6112 83 VNVM--DEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSY 160 (374)
Q Consensus 83 ~rI~--~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v 160 (374)
++|. |+.+++.+|+++|+|++...|.+++..+|+||+|.++|+||+++||.||++|...|++.+..+|..|||.|.|+
T Consensus 68 vki~~~~~~elL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~ 147 (428)
T KOG2668|consen 68 VKIRVDDADELLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSA 147 (428)
T ss_pred EeeccCCHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEe
Confidence 8875 44688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccCch--hHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHH
Q psy6112 161 TLKDIRDDE--GYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEV 238 (374)
Q Consensus 161 ~I~~I~~~~--~~~~a~~~~~~Ae~~r~A~i~~Aea~rea~i~~Aea~~~~~~a~~~~e~~iAea~~~~ei~~a~~~~~~ 238 (374)
+|+|+.|.+ +|++|||+...++..++|+|..||+++++.|+++.+.++...+++.+++.|+.++|.++++++.++.+|
T Consensus 148 tiKdl~D~~g~~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV 227 (428)
T KOG2668|consen 148 TIKDLVDVPGHEYLSSLGKATTAEVARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDVEV 227 (428)
T ss_pred EhhhhhcccchHHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHh
Confidence 999999988 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH
Q psy6112 239 ETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEKLAQANKKRLMI 318 (374)
Q Consensus 239 ~~a~a~a~~a~~~~~a~~~~~i~e~~~~~ev~e~~~~i~~~~~e~~~~e~e~eA~v~~~AeAe~~~~~~~AeA~~~~~~~ 318 (374)
.+.+++|+.+|+++.++.++.|.+++.+++++++.++|.++++|+.++.++++|.++.||+|+.++.++.|||++.....
T Consensus 228 ~~~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~ 307 (428)
T KOG2668|consen 228 NTNKAEADLAYELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNK 307 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy6112 319 EAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILESLP 373 (374)
Q Consensus 319 ~AeAeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa~~~~~~~~lp 373 (374)
.++|||+.||.+|+|||.+|.+.+.|||+.|+++|++|..|++++.+.|+|+.||
T Consensus 308 qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l~~lLealp 362 (428)
T KOG2668|consen 308 QAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYLRTLLEALP 362 (428)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999
No 2
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=4.7e-43 Score=353.05 Aligned_cols=365 Identities=27% Similarity=0.364 Sum_probs=300.3
Q ss_pred CCcceeecCCCceEeecCCCcccCcC------CcceEEecCCceEEEcccceeEEeccCccccccee-eecCCCCccccc
Q psy6112 1 MGSFMDAVTPNLCWSQEEEPLFGPQY------NAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVT-MVSSGSGELGAA 73 (374)
Q Consensus 1 ~~~~~~k~~~~~~~v~~~~~~~g~~~------G~~~~v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~-~~~s~~~~it~~ 73 (374)
+.+||++|+||++|| ++|+-| |+-..++.||+||++|+||...++|+..++++..+ .+.+.|+ .
T Consensus 31 ~~~~y~~a~~~~aLI-----~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg----~ 101 (548)
T COG2268 31 GKRFYIIARPNEALI-----RTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDG----M 101 (548)
T ss_pred hheeEEecCCCceEE-----EeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCC----C
Confidence 358999999999999 999654 44344667899999999999999998887776653 3344433 2
Q ss_pred eEEEEEEEEEeecCchhhHHHhhhhccCC-CHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6112 74 KLTGEILTIVNVMDEEGHEQKHSTKQNHI-SEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVN 152 (374)
Q Consensus 74 ~v~vd~~~~~rI~~~~~~~~~a~~~~l~~-~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~ 152 (374)
++++++.++++|.++...+.+++++|+++ ++..+..++.++++|+||.++++||+.++++||..|.+.|.+.+..+|++
T Consensus 102 p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k 181 (548)
T COG2268 102 PLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSK 181 (548)
T ss_pred ccceeEEEEEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHh
Confidence 67778899999999999999999999999 88899999999999999999999999999999999999999999999999
Q ss_pred cCcEEeEEEeeeccCc-------hhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------
Q psy6112 153 MGITVVSYTLKDIRDD-------EGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFV---------- 215 (374)
Q Consensus 153 ~Gl~i~~v~I~~I~~~-------~~~~~a~~~~~~Ae~~r~A~i~~Aea~rea~i~~Aea~~~~~~a~~~---------- 215 (374)
+|+.|+++.|+++.|+ ++|++++|.+.+++..+++.+.++|..+++.|..++++++++..+..
T Consensus 182 ~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~~~e~~v~~q~~~~~a 261 (548)
T COG2268 182 MGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTA 261 (548)
T ss_pred cCeeeeeeeecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHhhhhhcccccchh
Confidence 9999999999999998 99999999999999999999999999999999999999999988887
Q ss_pred -----hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHH--
Q psy6112 216 -----NDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIK-----EEQ-MKIQVIERNQEIQVQEQE-- 282 (374)
Q Consensus 216 -----~e~~iAea~~~~ei~~a~~~~~~~~a~a~a~~a~~~~~a~~~~~i~-----e~~-~~~ev~e~~~~i~~~~~e-- 282 (374)
-.+.++...+.....+++...+...++..+++++.+..+..++++. +++ +++...+++++.++..++
T Consensus 262 ~~~~~~ki~~a~~e~e~~~~~ae~~~~a~~a~~~Aeq~~~~~~~~~e~ev~~~~~~e~~~~rv~~i~r~~e~el~~~~~~ 341 (548)
T COG2268 262 EQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERS 341 (548)
T ss_pred hhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhH
Confidence 3566788888888999999999999999999999999988887776 444 777888888888877666
Q ss_pred --HHHHHHhhccccccchh------------------------HHHHHHHHHHHH---HHHHHH---HHHHHHHHHHHHH
Q psy6112 283 --IQRRKKELESSVNRPAE------------------------AEKYRIEKLAQA---NKKRLM---IEAEAEAEAIRLK 330 (374)
Q Consensus 283 --~~~~e~e~eA~v~~~Ae------------------------Ae~~~~~~~AeA---~~~~~~---~~AeAeA~~i~~~ 330 (374)
+.+.+.+++..+.+.++ ++++.....+++ ++-++. ..+.++|++..+.
T Consensus 342 ~~~~~~q~~~~~~~~a~an~~~~~~~~~~~~~~~a~e~~~~~~aeq~~~~~~aea~eqe~v~i~~~~e~~~aea~a~~a~ 421 (548)
T COG2268 342 YFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAE 421 (548)
T ss_pred HHHHHHHHHhHHHHHHHhhhHhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333332221111111 222222222222 111111 1223588888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhCCC
Q psy6112 331 GEAEAAAIAAKARAEVEIMTKKAEAWKDYREA---AVIDMILESLPK 374 (374)
Q Consensus 331 g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~a---a~~~~~~~~lp~ 374 (374)
+.++|++++.+|.|||++.+++||||+.++++ .+..+++++||+
T Consensus 422 ~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~~~~~~vq~Lp~ 468 (548)
T COG2268 422 IKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQALPE 468 (548)
T ss_pred HHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 677888999984
No 3
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.97 E-value=1.5e-29 Score=237.36 Aligned_cols=211 Identities=17% Similarity=0.142 Sum_probs=174.6
Q ss_pred eecCCCceEeecCCCcccCcCCcceE-EecCCceEEEcccceeEEeccCccccccee--eecCCCCccccceEEEEEEEE
Q psy6112 6 DAVTPNLCWSQEEEPLFGPQYNAFKV-LIKSGADMVLYYFQVAAEVAAPLSQTKRVT--MVSSGSGELGAAKLTGEILTI 82 (374)
Q Consensus 6 ~k~~~~~~~v~~~~~~~g~~~G~~~~-v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~--~~~s~~~~it~~~v~vd~~~~ 82 (374)
..|+|++.-| ++. ||++.. +++||+||+|||++.+..+|++++.++... +.+.+ + .+|.+|+++.
T Consensus 2 ~iV~~ge~~V-----v~~--~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D-~----~~v~v~~~v~ 69 (242)
T cd03405 2 FIVDEGEQAV-----VLR--FGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKD-K----KRLIVDAYAK 69 (242)
T ss_pred EEeCCCeEEE-----EEE--cCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccC-C----cEEEEEEEEE
Confidence 4679999888 776 999875 689999999999999999998887655322 22332 2 2588899999
Q ss_pred EeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHH-HHHHHHHHHHHHHHhhhccCcEEeEEE
Q psy6112 83 VNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKD-RKKFSKQVFQVASSDLVNMGITVVSYT 161 (374)
Q Consensus 83 ~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~-R~~~~~~v~~~v~~~l~~~Gl~i~~v~ 161 (374)
|+|.|+..++. ++ +.+.+.+..++.+.+.+.+|+++|+||+++++++ |+.|.+.|.+.+.+.|.+|||.|++|+
T Consensus 70 yrI~d~~~~~~----~~-~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~ 144 (242)
T cd03405 70 WRITDPLRFYQ----AV-GGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVR 144 (242)
T ss_pred EEEcCHHHHHH----Hh-cChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEE
Confidence 99998665432 22 3334445688889999999999999999999988 999999999999999999999999999
Q ss_pred eeeccCchhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHH
Q psy6112 162 LKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVET 240 (374)
Q Consensus 162 I~~I~~~~~~~~a~~~~~~Ae~~r~A~i~~Aea~rea~i~~Aea~~~~~~a~~~~e~~iAea~~~~ei~~a~~~~~~~~ 240 (374)
|.+|++|+++.++|..++.+++++.+...+|+|++++.+..++++++. ....|+++++..+.+|+.+.+...
T Consensus 145 i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~-------~~~~Aea~a~a~~~~a~gea~a~~ 216 (242)
T cd03405 145 IKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRER-------TVILAEAYREAQEIRGEGDAEAAR 216 (242)
T ss_pred EEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999988888865 345677777777777776665443
No 4
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=99.97 E-value=1.8e-29 Score=246.14 Aligned_cols=215 Identities=17% Similarity=0.156 Sum_probs=176.0
Q ss_pred cceeecCCCceEeecCCCcccCcCCcceE-------EecCCceEEEcccceeEEeccCccccccee--eecCCCCccccc
Q psy6112 3 SFMDAVTPNLCWSQEEEPLFGPQYNAFKV-------LIKSGADMVLYYFQVAAEVAAPLSQTKRVT--MVSSGSGELGAA 73 (374)
Q Consensus 3 ~~~~k~~~~~~~v~~~~~~~g~~~G~~~~-------v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~--~~~s~~~~it~~ 73 (374)
.+|..++|++.-| |+. ||+|.. +++|||||+||||+++..+|+|+++++... +.+.++ .
T Consensus 18 ~s~~iV~ege~gV-----V~r--FGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~-----~ 85 (334)
T PRK11029 18 MSVFVVKEGERGI-----VLR--FGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEK-----K 85 (334)
T ss_pred heEEEECCCeEEE-----EEE--CCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCC-----C
Confidence 4567889999776 664 999876 489999999999999999999988766543 333333 2
Q ss_pred eEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHH-HHHHHHHHHHHHHHHh---
Q psy6112 74 KLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYK-DRKKFSKQVFQVASSD--- 149 (374)
Q Consensus 74 ~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~-~R~~~~~~v~~~v~~~--- 149 (374)
+|.||++++|+|+|+..++. .+.+.+.......+..++...||+++|++|++++++ +|..++..|++.++..
T Consensus 86 ~V~VD~~V~yrI~Dp~~~~~----~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~ 161 (334)
T PRK11029 86 DLIVDSYIKWRISDFSRYYL----ATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAG 161 (334)
T ss_pred EEEEEEEEEEEECCHHHHHH----HhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence 68889999999998666532 222334555667888888899999999999999997 6999999999998853
Q ss_pred ------------------------------------hhccCcEEeEEEeeeccCchhHHHHHhhhhhhhhhHHHHHHHHH
Q psy6112 150 ------------------------------------LVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAE 193 (374)
Q Consensus 150 ------------------------------------l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~~Ae~~r~A~i~~Ae 193 (374)
+.+|||+|.+|+|++|++|+++.++|+.+|.|++++.|...+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~ae 241 (334)
T PRK11029 162 TEDEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQ 241 (334)
T ss_pred ccccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHH
Q psy6112 194 AQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVET 240 (374)
Q Consensus 194 a~rea~i~~Aea~~~~~~a~~~~e~~iAea~~~~ei~~a~~~~~~~~ 240 (374)
|++++...+++++.+. ....|+|.++..+.+|+.+++...
T Consensus 242 ge~~a~~~~a~A~~e~-------~~~~AeA~~~a~i~~aegeA~a~~ 281 (334)
T PRK11029 242 GQEEAEKLRATADYEV-------TRTLAEAERQGRIMRGEGDAEAAK 281 (334)
T ss_pred HHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999876 344577777777777777665443
No 5
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.97 E-value=1.6e-29 Score=240.34 Aligned_cols=173 Identities=17% Similarity=0.201 Sum_probs=145.9
Q ss_pred CcCCcceEEecCCceEEEccccee-EEeccCcccccceeeecCCCCccccceEEEEEEEEEeecCch--hhHHHhhhhcc
Q psy6112 24 PQYNAFKVLIKSGADMVLYYFQVA-AEVAAPLSQTKRVTMVSSGSGELGAAKLTGEILTIVNVMDEE--GHEQKHSTKQN 100 (374)
Q Consensus 24 ~~~G~~~~v~~pGl~f~iP~i~~v-~~v~~r~~~~~~~~~~~s~~~~it~~~v~vd~~~~~rI~~~~--~~~~~a~~~~l 100 (374)
.|||+|+.+++|||||+||||+++ ..+|+++++++......|.|+ .+|.||++++|+|.|+. ..+ .+|.
T Consensus 8 ~rfGk~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~----~~V~vd~~v~yrI~d~~~~~~~----~~~~ 79 (262)
T cd03407 8 ERFGKFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDN----VFVTVVGQIQYRVSEENATDAF----YKLG 79 (262)
T ss_pred eecCcccccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCC----CEEEEEEEEEEEECCcHHHHHH----HHcC
Confidence 669999999999999999999887 488988887665432233332 26888999999998754 333 2443
Q ss_pred CCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhhhh
Q psy6112 101 HISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMART 180 (374)
Q Consensus 101 ~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~~ 180 (374)
+ . ...+...+.+.||+++|+||+++++++|+.|+..|.+.+...+++|||.|++|+|++|++|+++.++|..++.
T Consensus 80 ~-~----~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~ 154 (262)
T cd03407 80 N-P----EEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINA 154 (262)
T ss_pred C-H----HHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHH
Confidence 3 2 2366666677779999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 181 AEVKRDARIGEAEAQKDARIKEAMAEEEK 209 (374)
Q Consensus 181 Ae~~r~A~i~~Aea~rea~i~~Aea~~~~ 209 (374)
|++++++.+.+|++.+...+..|+++.++
T Consensus 155 A~~~~~a~~~~Aea~~~~~i~~A~~ea~a 183 (262)
T cd03407 155 AQRQRVAAVHKAEAEKIKDIKAAEADAEA 183 (262)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888887765
No 6
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=99.97 E-value=9.5e-29 Score=240.98 Aligned_cols=213 Identities=15% Similarity=0.143 Sum_probs=172.9
Q ss_pred cceeecCCCceEeecCCCcccCcCCcceEEe-------cCCceEEEcccceeEEeccCccccccee-eecCCCCccccce
Q psy6112 3 SFMDAVTPNLCWSQEEEPLFGPQYNAFKVLI-------KSGADMVLYYFQVAAEVAAPLSQTKRVT-MVSSGSGELGAAK 74 (374)
Q Consensus 3 ~~~~k~~~~~~~v~~~~~~~g~~~G~~~~v~-------~pGl~f~iP~i~~v~~v~~r~~~~~~~~-~~~s~~~~it~~~ 74 (374)
.+|..++|+++.| +++ ||++..+. +|||||+|||++++..+|+|.+.++... ...|.|+ .+
T Consensus 18 ~~~~iV~~ge~gV-----v~~--fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~----~~ 86 (317)
T TIGR01932 18 QPFFIIKEGERGI-----ITR--FGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEK----KD 86 (317)
T ss_pred heEEEECCCeEEE-----EEe--cCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCC----CE
Confidence 5678899999999 887 99987655 7999999999999999999988766432 2222222 26
Q ss_pred EEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHH-HHHH---------------
Q psy6112 75 LTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKD-RKKF--------------- 138 (374)
Q Consensus 75 v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~-R~~~--------------- 138 (374)
|.||++++|+|.|+.+++. ++.+.+.......+...+.+++|+++|++|+++++++ |+.+
T Consensus 87 V~Vd~~V~yrV~d~~~~~~----~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~ 162 (317)
T TIGR01932 87 IIIDTYIRWRIEDFKKYYL----STGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKI 162 (317)
T ss_pred EEEEEEEEEEECCHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccc
Confidence 8889999999998766542 2233345567788999999999999999999999975 5444
Q ss_pred --------------HHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy6112 139 --------------SKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAM 204 (374)
Q Consensus 139 --------------~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~~Ae~~r~A~i~~Aea~rea~i~~Ae 204 (374)
...|.+.+...+.+|||.|.+|.|++|++|+++.++|+.++.|++++.|...+++|++.+....++
T Consensus 163 ~~~~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~ 242 (317)
T TIGR01932 163 NKIAMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGK 242 (317)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668888899999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHH
Q psy6112 205 AEEEKMAARFVNDTEIAKAQRDFEIKKATYDAE 237 (374)
Q Consensus 205 a~~~~~~a~~~~e~~iAea~~~~ei~~a~~~~~ 237 (374)
++.+. ...+++|+++..+.+|+.+++
T Consensus 243 A~~e~-------~~~~aeA~a~a~~~~Aegea~ 268 (317)
T TIGR01932 243 AEYEV-------RKILSEAYRTARIIKGEGDAE 268 (317)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHhhHHHH
Confidence 77755 456667777776666666554
No 7
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.96 E-value=1.2e-27 Score=227.73 Aligned_cols=165 Identities=17% Similarity=0.160 Sum_probs=123.3
Q ss_pred cceeecCCCceEeecCCCcccCcCCcceEEecCCceEEEcccceeEEe-ccCcccc-----cc--eeeecCCCCccccc-
Q psy6112 3 SFMDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEV-AAPLSQT-----KR--VTMVSSGSGELGAA- 73 (374)
Q Consensus 3 ~~~~k~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP~i~~v~~v-~~r~~~~-----~~--~~~~~s~~~~it~~- 73 (374)
.+|..++|++..| |+. ||+++.+++||+||+|||++.+..+ +++.... +. ......+..++|+|
T Consensus 13 ~s~~~V~~ge~gV-----V~~--fGk~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~ 85 (266)
T cd03404 13 SGFYIVQPGERGV-----VLR--FGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDE 85 (266)
T ss_pred cEEEEECCCceEE-----eEE--cCccccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCC
Confidence 4578899999888 776 9999999999999999999765433 3211000 00 00011112344544
Q ss_pred -eEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHH-HHHHHHHHHHHHHHhhh
Q psy6112 74 -KLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKD-RKKFSKQVFQVASSDLV 151 (374)
Q Consensus 74 -~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~-R~~~~~~v~~~v~~~l~ 151 (374)
+|.+|++++|+|.|+..+++ + . .+ ....+.+.+.+++|+++|+||+++++++ |+.|++.|.+.+...++
T Consensus 86 ~~v~vd~~v~yrI~d~~~~~~----~-~-~~---~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~ 156 (266)
T cd03404 86 NIVDVEFAVQYRISDPYDYLF----N-V-RD---PEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILD 156 (266)
T ss_pred CEEEEEEEEEEEECCHHHHHh----h-C-CC---HHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 58889999999988665432 1 1 22 3457778888888999999999999998 99999999999999999
Q ss_pred cc--CcEEeEEEeeeccCchhHHHHHhhhhhhhh
Q psy6112 152 NM--GITVVSYTLKDIRDDEGYLKSLGMARTAEV 183 (374)
Q Consensus 152 ~~--Gl~i~~v~I~~I~~~~~~~~a~~~~~~Ae~ 183 (374)
.| |+.|.+|+|++|++|+++.++|.....|+.
T Consensus 157 ~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q 190 (266)
T cd03404 157 AYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQ 190 (266)
T ss_pred ccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 76 999999999999999999998866444433
No 8
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.96 E-value=1.3e-27 Score=220.45 Aligned_cols=181 Identities=14% Similarity=0.154 Sum_probs=154.5
Q ss_pred cCCCceEeecCCCcccCcCCcceEEecCCceEEEccccee-EEeccCcccccceeeecCCCCccccc--eEEEEEEEEEe
Q psy6112 8 VTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVA-AEVAAPLSQTKRVTMVSSGSGELGAA--KLTGEILTIVN 84 (374)
Q Consensus 8 ~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP~i~~v-~~v~~r~~~~~~~~~~~s~~~~it~~--~v~vd~~~~~r 84 (374)
|+|++.-| ++. ||++..+++||+||+|||++++ ..+|++.++++... +.++|+| +|.+++.+.|+
T Consensus 1 V~~ge~~V-----v~~--~G~~~~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~-----~~v~T~D~~~v~v~~~v~yr 68 (215)
T cd03403 1 VPQYERGV-----VER--LGKYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPP-----QEVITKDNVTVRVDAVLYYR 68 (215)
T ss_pred CCcceEEE-----EEE--cCcCccccCCcEEEEeccceEEEEEEeeEEEEEccCC-----ceeEcCCCCEEEEEEEEEEE
Confidence 57888777 665 9999999999999999999998 99999888665432 1222333 68889999999
Q ss_pred ecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeee
Q psy6112 85 VMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKD 164 (374)
Q Consensus 85 I~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~ 164 (374)
|.|+..++. . + .+ ....+...+.+.+|+++|++|+++++++|..|++.|.+.++..+.+|||.|++|.|++
T Consensus 69 I~d~~~~~~-~---~--~~---~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~ 139 (215)
T cd03403 69 VVDPVKAVY-G---V--ED---YRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKD 139 (215)
T ss_pred EecHHHHHh-c---C--CC---HHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEee
Confidence 987665432 1 1 12 3346777778888999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 165 IRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEK 209 (374)
Q Consensus 165 I~~~~~~~~a~~~~~~Ae~~r~A~i~~Aea~rea~i~~Aea~~~~ 209 (374)
|++|+++.++|..++.|+++++|.+.+|+|++++.+..++++++.
T Consensus 140 i~~p~~~~~ai~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~~~~ 184 (215)
T cd03403 140 IILPQEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLAEAAKQA 184 (215)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999865
No 9
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.96 E-value=9e-27 Score=222.16 Aligned_cols=190 Identities=13% Similarity=0.139 Sum_probs=155.2
Q ss_pred cceeecCCCceEeecCCCcccCcCCcc-eEEecCCceEEEcccceeEEeccCccccccee--eecCCCCccccceEEEEE
Q psy6112 3 SFMDAVTPNLCWSQEEEPLFGPQYNAF-KVLIKSGADMVLYYFQVAAEVAAPLSQTKRVT--MVSSGSGELGAAKLTGEI 79 (374)
Q Consensus 3 ~~~~k~~~~~~~v~~~~~~~g~~~G~~-~~v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~--~~~s~~~~it~~~v~vd~ 79 (374)
..+..++|++.-| +. |||++ +.+++|||||+|||++++..++.+++..+... +.++ ++ ..|++|.
T Consensus 3 ssv~iV~ege~gV-----V~--RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~Tk-Dg----~~ItvD~ 70 (280)
T cd03406 3 SALHKIEEGHVGV-----YY--RGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTS-GG----VMIYFDR 70 (280)
T ss_pred ceEEEECCCeEEE-----EE--ECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccC-CC----cEEEEEE
Confidence 3456789999777 66 49997 67889999999999999988998876654322 2222 22 2577787
Q ss_pred EEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHH-HHHHHHHHHHHHHHHhhhcc--CcE
Q psy6112 80 LTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYK-DRKKFSKQVFQVASSDLVNM--GIT 156 (374)
Q Consensus 80 ~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~-~R~~~~~~v~~~v~~~l~~~--Gl~ 156 (374)
+..|++.|+.. ++.+..+|. .+....++.+.+...+|.++|++|++++++ +|+.+...|.+.+...|+.| ||.
T Consensus 71 i~v~~ivdp~~-~~~~~~~y~---~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~ 146 (280)
T cd03406 71 IEVVNFLIPDS-VYDIVKNYT---ADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLE 146 (280)
T ss_pred EEEEEecCHHH-HHHHHHHHh---HhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcE
Confidence 77788777554 455544442 234788999999999999999999999998 79999999999999999988 999
Q ss_pred EeEEEeeeccCchhHHHHHhhhhhhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 157 VVSYTLKDIRDDEGYLKSLGMARTAEVKRD--------ARIGEAEAQKDARIKEAMAEEEK 209 (374)
Q Consensus 157 i~~v~I~~I~~~~~~~~a~~~~~~Ae~~r~--------A~i~~Aea~rea~i~~Aea~~~~ 209 (374)
|++|+|+++++|+.+.+++ .+|.|||++. +.+.+||++|...+.+|+++.+.
T Consensus 147 I~dV~I~~id~P~~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~ 206 (280)
T cd03406 147 IQAVRVTKPKIPEAIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQV 206 (280)
T ss_pred EEEEEEEecCCCHHHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhH
Confidence 9999999999999999996 8999999999 99999999999888887777755
No 10
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=99.95 E-value=1.1e-26 Score=220.78 Aligned_cols=207 Identities=14% Similarity=0.177 Sum_probs=161.3
Q ss_pred eeecCCCceEeecCCCcccCcCCcceEEecCCceEEEcccceeEEeccCccc-ccceeeecCCCCccccceEEEEEEEEE
Q psy6112 5 MDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQ-TKRVTMVSSGSGELGAAKLTGEILTIV 83 (374)
Q Consensus 5 ~~k~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP~i~~v~~v~~r~~~-~~~~~~~~s~~~~it~~~v~vd~~~~~ 83 (374)
|..|+|++.-| ++. ||++..+++||+||+|||++++..+|++.+. +.......|.|+ ..|.||++++|
T Consensus 1 ~~iV~~ge~~V-----v~~--fGk~~~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~----~~v~vd~~v~y 69 (261)
T TIGR01933 1 IYTIGEAERGV-----VLR--FGKYHRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDE----NIVNVEMNVQY 69 (261)
T ss_pred CEEeCCCeEEE-----EEE--cCccccccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCC----CEEEEEEEEEE
Confidence 34679999877 776 9999999999999999999999999976432 111111222222 25888999999
Q ss_pred eecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHH-HHHHHHHHHHHHHHHhhhcc--CcEEeEE
Q psy6112 84 NVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYK-DRKKFSKQVFQVASSDLVNM--GITVVSY 160 (374)
Q Consensus 84 rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~-~R~~~~~~v~~~v~~~l~~~--Gl~i~~v 160 (374)
+|.|+..+++ . + ......+..++.+.+|+++|++|++++++ +|+.|+..|.+.++..++.| ||.|++|
T Consensus 70 rI~d~~~~~~-~----~----~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v 140 (261)
T TIGR01933 70 RITDPYKYLF-S----V----ENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDV 140 (261)
T ss_pred EECCHHHHHH-h----C----CCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEE
Confidence 9988665432 1 1 22446678888888899999999999998 89999999999999999966 9999999
Q ss_pred EeeeccCchhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHH
Q psy6112 161 TLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEV 238 (374)
Q Consensus 161 ~I~~I~~~~~~~~a~~~~~~Ae~~r~A~i~~Aea~rea~i~~Aea~~~~~~a~~~~e~~iAea~~~~ei~~a~~~~~~ 238 (374)
+|++|++|+++.++|...+.|+.++.+.+.+|++.+...+.+|+++.+. .+..|++.++..+.+|+.+.+.
T Consensus 141 ~I~~i~~p~~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~-------~~~~Aea~~~~~~~~a~g~a~~ 211 (261)
T TIGR01933 141 NFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQR-------IIEEARGYKERRINRAKGDVAR 211 (261)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhHHH
Confidence 9999999999999999999999988888888888888777777776644 3445666666665555555443
No 11
>KOG2620|consensus
Probab=99.95 E-value=9.7e-28 Score=219.58 Aligned_cols=200 Identities=18% Similarity=0.239 Sum_probs=155.8
Q ss_pred CcCCcceEEecCCceEEEcccceeEE-ec-cCcccccceeeecCCCCccccc--eEEEEEEEEEeecCchhhHHHhhhhc
Q psy6112 24 PQYNAFKVLIKSGADMVLYYFQVAAE-VA-APLSQTKRVTMVSSGSGELGAA--KLTGEILTIVNVMDEEGHEQKHSTKQ 99 (374)
Q Consensus 24 ~~~G~~~~v~~pGl~f~iP~i~~v~~-v~-~r~~~~~~~~~~~s~~~~it~~--~v~vd~~~~~rI~~~~~~~~~a~~~~ 99 (374)
.|||+|+++++||+||++|++....+ .+ +++...+ ..+..+|+| .|.+|++.||||.||... .|.+.
T Consensus 21 ER~GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~------~~q~aiTkDNV~v~idgvly~rv~dp~~~--dAsYg- 91 (301)
T KOG2620|consen 21 ERFGKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILD------PKQEAITKDNVFVQIDGVLYYRVVDPYAD--DASYG- 91 (301)
T ss_pred HHhhhhhhhcCCcceechhhhhhHHHHHHHHHHhhcc------cccceeecccEEEEEEEEEEEEEeccccc--ccccc-
Confidence 46999999999999999999944443 33 2222222 223344444 466789999999886541 12111
Q ss_pred cCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhhh
Q psy6112 100 NHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMAR 179 (374)
Q Consensus 100 l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~ 179 (374)
+..+...+..++++|+ |+.+|+|||+.+|..|+.++..|.+.++..+..||+.+..+.|.||.+|+.+..+|..+.
T Consensus 92 venp~~aI~qlaqttm----RsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~ 167 (301)
T KOG2620|consen 92 VENPEYAIQQLAQTTM----RSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQN 167 (301)
T ss_pred cCCHHHHHHHHHHHHH----HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHH
Confidence 3345688999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy6112 180 TAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRA 243 (374)
Q Consensus 180 ~Ae~~r~A~i~~Aea~rea~i~~Aea~~~~~~a~~~~e~~iAea~~~~ei~~a~~~~~~~~a~a 243 (374)
.|+|.++|.+.++||+|++.|.+|+++++++... .++.+.-++..+...++...+.|
T Consensus 168 ~AeR~krAailesEger~~~InrAEGek~s~iL~-------seg~~~qr~n~a~Gea~ail~~A 224 (301)
T KOG2620|consen 168 EAERMKRAAILESEGERIAQINRAEGEKESKILA-------SEGIARQRQNIADGEAEAILAFA 224 (301)
T ss_pred HHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhh-------hHHHHHHHHHHHhhHHHHHHHHh
Confidence 9999999999999999999999999999875332 33344444444444444444443
No 12
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=99.94 E-value=4.2e-25 Score=221.17 Aligned_cols=206 Identities=16% Similarity=0.132 Sum_probs=162.8
Q ss_pred cceeecCCCceEeecCCCcccCcCCcceEEecCCceEEEcccceeEEeccCcccccceeeecCCCCccccc--eEEEEEE
Q psy6112 3 SFMDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVTMVSSGSGELGAA--KLTGEIL 80 (374)
Q Consensus 3 ~~~~k~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~~~~s~~~~it~~--~v~vd~~ 80 (374)
+.|..++|++.-| |.. ||+|+.+++|||||++|||+++..++.+.+.... .....+|+| .|.||.+
T Consensus 95 sg~yiV~e~E~gV-----V~r--FGk~~~~l~PGLhfk~PfId~V~~vdv~~~~~~~-----~~~~mLT~D~n~V~Vd~~ 162 (419)
T PRK10930 95 SGFYTIKEAERGV-----VTR--FGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELA-----ASGVMLTSDENVVRVEMN 162 (419)
T ss_pred heEEEECCCeEEE-----EEE--CCcCcceeCCceEEecCceEEEEEEEeEEEEEcc-----CcceeECCCCCEEEEEEE
Confidence 3466778888666 654 9999999999999999999999999866542211 112233333 5888999
Q ss_pred EEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHH-HHHHHHHHHHHHHHhhhcc--CcEE
Q psy6112 81 TIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKD-RKKFSKQVFQVASSDLVNM--GITV 157 (374)
Q Consensus 81 ~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~-R~~~~~~v~~~v~~~l~~~--Gl~i 157 (374)
++|+|.|+..+++. . ......+..++..+||++||++||++++++ |..+...|.+.++..|+.| ||+|
T Consensus 163 VqYrI~Dp~~~lf~-v--------~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V 233 (419)
T PRK10930 163 VQYRVTDPEKYLFS-V--------TSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITL 233 (419)
T ss_pred EEEEECCHHHHHHh-c--------cCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEE
Confidence 99999987665422 1 124566777778888999999999999985 9999999999999999987 9999
Q ss_pred eEEEeeeccCchhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHH
Q psy6112 158 VSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDA 236 (374)
Q Consensus 158 ~~v~I~~I~~~~~~~~a~~~~~~Ae~~r~A~i~~Aea~rea~i~~Aea~~~~~~a~~~~e~~iAea~~~~ei~~a~~~~ 236 (374)
++|+|++|++|+++.+++...+.|+..+++.+.+|++.+...+-+|+++.+. -+..|+|+++..+.+|+.+.
T Consensus 234 ~~V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~-------ii~~AeAyr~~~i~~AeGda 305 (419)
T PRK10930 234 LDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQR-------ILEEARAYKAQTILEAQGEV 305 (419)
T ss_pred EEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhH
Confidence 9999999999999999999888898888888998888888888888887755 24446677777766666654
No 13
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.94 E-value=2.5e-25 Score=202.23 Aligned_cols=184 Identities=11% Similarity=0.111 Sum_probs=136.6
Q ss_pred eeecCCCceEeecCCCcccCcCCcceE--EecCCceEEEcccceeEEeccCcccccceeeecCCCCccccc--eEEEEEE
Q psy6112 5 MDAVTPNLCWSQEEEPLFGPQYNAFKV--LIKSGADMVLYYFQVAAEVAAPLSQTKRVTMVSSGSGELGAA--KLTGEIL 80 (374)
Q Consensus 5 ~~k~~~~~~~v~~~~~~~g~~~G~~~~--v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~~~~s~~~~it~~--~v~vd~~ 80 (374)
|..++|++.-| ++. ||++.. +++||+||++||++++..+|++.++++..... .|+| .|.+|+.
T Consensus 2 ~~~V~~g~~gV-----v~~--~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~------~t~d~~~V~v~~~ 68 (196)
T cd03401 2 LYNVDGGHRAV-----LFN--RGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTT------GSKDLQMVNITLR 68 (196)
T ss_pred EEEECCCcEEE-----EEE--ecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecc------cCCCCeEEEEEEE
Confidence 45778898766 554 565332 89999999999999999999988765533212 2334 4566667
Q ss_pred EEEeecCch-hhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeE
Q psy6112 81 TIVNVMDEE-GHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVS 159 (374)
Q Consensus 81 ~~~rI~~~~-~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~ 159 (374)
++|++.++. ..++ +++|.+ ....++..++...||+++|+||++|++++|+.|+..|.+.+...|.+|||.|.+
T Consensus 69 v~y~v~~~~~~~~~----~~~~~~--~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~ 142 (196)
T cd03401 69 VLFRPDASQLPRIY----QNLGED--YDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDD 142 (196)
T ss_pred EEEEeCHHHHHHHH----HHhCcc--hHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 777775321 1221 333432 234567777777789999999999999999999999999999999999999999
Q ss_pred EEeeeccCchhHHHHHhhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHH
Q psy6112 160 YTLKDIRDDEGYLKSLGMARTAEVKRDA---RIGEAEAQKDARIKEAMAEE 207 (374)
Q Consensus 160 v~I~~I~~~~~~~~a~~~~~~Ae~~r~A---~i~~Aea~rea~i~~Aea~~ 207 (374)
+.|++|++|++|.++|+.++.|+.+... .+.+|++++++.+.+|+|+.
T Consensus 143 v~i~~i~~p~~~~~ai~~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea 193 (196)
T cd03401 143 VSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEA 193 (196)
T ss_pred EEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999988777655332 35566666666666666654
No 14
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.93 E-value=5.6e-25 Score=203.69 Aligned_cols=170 Identities=13% Similarity=0.135 Sum_probs=139.9
Q ss_pred eeecCCCceEeecCCCcccCcCCcceEEe-cCCceEEEcccceeEEeccCccccccee--eecCCCCccccceEEEEEEE
Q psy6112 5 MDAVTPNLCWSQEEEPLFGPQYNAFKVLI-KSGADMVLYYFQVAAEVAAPLSQTKRVT--MVSSGSGELGAAKLTGEILT 81 (374)
Q Consensus 5 ~~k~~~~~~~v~~~~~~~g~~~G~~~~v~-~pGl~f~iP~i~~v~~v~~r~~~~~~~~--~~~s~~~~it~~~v~vd~~~ 81 (374)
|..++||+.-| ++. ||+|..+. +|||||++||++. .++|+|+++++..+ +.+.++ .+|.||+++
T Consensus 2 ~~iV~~ge~~V-----v~r--fGk~~~t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~-----~~v~V~~~V 68 (219)
T cd03402 2 LFVVEPNQARV-----LVL--FGRYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANG-----NPIEIAAVI 68 (219)
T ss_pred eEEECCCeeEE-----EEE--cCcCcccccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCC-----CEEEEEEEE
Confidence 34569999777 665 99998765 9999999999965 77999988766544 223332 268899999
Q ss_pred EEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHH-------HHHHHHHHHHHHHHHhhhccC
Q psy6112 82 IVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYK-------DRKKFSKQVFQVASSDLVNMG 154 (374)
Q Consensus 82 ~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~-------~R~~~~~~v~~~v~~~l~~~G 154 (374)
+|+|.|+.++++ ... .....+...++.+||+++|++|++++++ +|+.++..+.+.++..++.||
T Consensus 69 ~~rV~Dp~ka~~-~v~--------~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~G 139 (219)
T cd03402 69 VWRVVDTAKAVF-NVD--------DYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAG 139 (219)
T ss_pred EEEEcCHHHHHH-HcC--------CHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhC
Confidence 999998776543 211 1355777777788899999999999986 579999999999999999999
Q ss_pred cEEeEEEeeeccCchhHHHHHhhhhhhhhhHHHHHHHHHHHH
Q psy6112 155 ITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQK 196 (374)
Q Consensus 155 l~i~~v~I~~I~~~~~~~~a~~~~~~Ae~~r~A~i~~Aea~r 196 (374)
|+|.+++|+++++|+++.++|.++|.|++.+.|+-..++|.-
T Consensus 140 I~V~~v~I~~l~~p~ei~~am~~R~~Ae~~~~Ar~~~~~Ga~ 181 (219)
T cd03402 140 VEVVEARITHLAYAPEIAQAMLQRQQASAIIAARRKIVEGAV 181 (219)
T ss_pred cEEEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999888777544
No 15
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.9e-24 Score=207.04 Aligned_cols=195 Identities=16% Similarity=0.207 Sum_probs=153.5
Q ss_pred eecCCCceEeecCCCcccCcCCcceEEec-CCceEEEcc---c-ceeEEeccCcccccceeeecCCCCccccc--eEEEE
Q psy6112 6 DAVTPNLCWSQEEEPLFGPQYNAFKVLIK-SGADMVLYY---F-QVAAEVAAPLSQTKRVTMVSSGSGELGAA--KLTGE 78 (374)
Q Consensus 6 ~k~~~~~~~v~~~~~~~g~~~G~~~~v~~-pGl~f~iP~---i-~~v~~v~~r~~~~~~~~~~~s~~~~it~~--~v~vd 78 (374)
+-++|++..+ +. +||+|.++++ |||||+||| + ....+++.+.+.+|.. +.+.++|+| .|.||
T Consensus 22 ~~v~~~~~~v-----v~--r~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~----~~q~viT~D~~~V~vd 90 (291)
T COG0330 22 FVVKEGERGV-----VL--RFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVG----PPQEVITKDNVIVSVD 90 (291)
T ss_pred EEEcCCceEE-----EE--EecceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccC----CcceEEecCCCEEEEE
Confidence 4456666444 44 4999999999 999999999 3 5556777665555541 223334433 58889
Q ss_pred EEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHH-HHHHHHHHHHHHhhhccCcEE
Q psy6112 79 ILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRK-KFSKQVFQVASSDLVNMGITV 157 (374)
Q Consensus 79 ~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~-~~~~~v~~~v~~~l~~~Gl~i 157 (374)
.+++|+|+|+..+++ . + .. ....+...+...||+++|+|++++++++|+ .|+..+.+.++..+++||+.|
T Consensus 91 ~~v~~rv~d~~~~~~-~---v-~~----~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V 161 (291)
T COG0330 91 AVVQYRVTDPQKAVY-N---V-EN----AEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKV 161 (291)
T ss_pred EEEEEEEcCHHHHHH-h---c-CC----HHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEE
Confidence 999999998664432 2 1 11 444444555555599999999999999999 999999999999999999999
Q ss_pred eEEEeeeccCchhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy6112 158 VSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDF 227 (374)
Q Consensus 158 ~~v~I~~I~~~~~~~~a~~~~~~Ae~~r~A~i~~Aea~rea~i~~Aea~~~~~~a~~~~e~~iAea~~~~ 227 (374)
.+|+|+++++|.++..+|..++.|++++++.+.+|++.+.+.+.++++++++ ...++++.++.
T Consensus 162 ~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a-------~~i~aea~~~a 224 (291)
T COG0330 162 VDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEA-------AIILAEAEAEA 224 (291)
T ss_pred EEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHH-------HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888876 34455555544
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.90 E-value=5e-23 Score=183.11 Aligned_cols=173 Identities=20% Similarity=0.283 Sum_probs=113.7
Q ss_pred ecCCCceEeecCCCcccCcCCcceEEecCCceEEEcccceeEEeccCccccccee---eecCCCCccccceEEEEEEEEE
Q psy6112 7 AVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVT---MVSSGSGELGAAKLTGEILTIV 83 (374)
Q Consensus 7 k~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~---~~~s~~~~it~~~v~vd~~~~~ 83 (374)
.|+||++.| ++. +|+...+++||+||+|||++.+..+|++.+.++... ...+.++. ++.+++.+.|
T Consensus 2 ~V~~g~~~V-----~~~--~G~~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~----~v~v~~~v~y 70 (179)
T PF01145_consen 2 TVPPGEVGV-----VVR--FGKVKDVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGV----PVDVDVTVTY 70 (179)
T ss_dssp -------------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-----EEEEEEEEEE
T ss_pred EeCCCEEEE-----EEE--CCeEeEEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccc----eeeeeEEEEE
Confidence 579999888 777 899998999999999999999999998887766544 33333332 6888999999
Q ss_pred eecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEee
Q psy6112 84 NVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLK 163 (374)
Q Consensus 84 rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~ 163 (374)
+|.+++.++. +| +.+......++...+.+++|+++++|++.+++++|..|.+.|.+.+...+.+||++|.+++|.
T Consensus 71 ~i~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~ 145 (179)
T PF01145_consen 71 RIEDPPKFVQ----NY-EGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQIT 145 (179)
T ss_dssp EES-CCCCCC----CC-SS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEE
T ss_pred EechHHHHHH----hh-hcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEe
Confidence 9977666543 33 335678999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCchhHHHHHhhhhhhhhhH-HHHHHHHHHH
Q psy6112 164 DIRDDEGYLKSLGMARTAEVKR-DARIGEAEAQ 195 (374)
Q Consensus 164 ~I~~~~~~~~a~~~~~~Ae~~r-~A~i~~Aea~ 195 (374)
++++|+++.+++.....++.++ ++.+.+|+++
T Consensus 146 ~~~~~~~~~~~i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 146 DIDPPQEVEEAIEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp EEEECTTHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999888 7777766654
No 17
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.89 E-value=4.5e-22 Score=173.97 Aligned_cols=156 Identities=13% Similarity=0.175 Sum_probs=128.5
Q ss_pred ceeecCCCceEeecCCCcccCcCCcceEEecCCceEEEcccceeEEeccCccccccee-eecCCCCccccceEEEEEEEE
Q psy6112 4 FMDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVT-MVSSGSGELGAAKLTGEILTI 82 (374)
Q Consensus 4 ~~~k~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~-~~~s~~~~it~~~v~vd~~~~ 82 (374)
+|..++|+++-| +++ ||++..+++||+||+|||++.+..+|++.+++.... ...+.+. .+|.+++.+.
T Consensus 2 ~~~~V~~g~~~v-----~~~--~G~~~~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~----~~v~v~~~v~ 70 (160)
T smart00244 2 AIKVVGEGEAGV-----VER--LGRVLRVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDN----VKVSVDAVVY 70 (160)
T ss_pred cEEEEcccEEEE-----EEe--cCccccccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCC----cEEEEeEEEE
Confidence 678899999888 777 899988999999999999999999998887654332 1122222 2688899999
Q ss_pred EeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHH-HHHHHHHHHHHHHHHhhhccCcEEeEEE
Q psy6112 83 VNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYK-DRKKFSKQVFQVASSDLVNMGITVVSYT 161 (374)
Q Consensus 83 ~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~-~R~~~~~~v~~~v~~~l~~~Gl~i~~v~ 161 (374)
|+|.|+..++ .++.|. +. ..+...+.+++|+++|+++++++++ +|..|++.+.+.+.+.+++||+.|.+++
T Consensus 71 ~rv~d~~~~~----~~~~~~--~~--~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~ 142 (160)
T smart00244 71 YRVLDPLKAV----YRVLDA--DY--AVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVE 142 (160)
T ss_pred EEEccHHHHh----hhcCCH--HH--HHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 9998865443 233432 21 5777888888899999999999999 6999999999999999999999999999
Q ss_pred eeeccCchhHHHHHhhh
Q psy6112 162 LKDIRDDEGYLKSLGMA 178 (374)
Q Consensus 162 I~~I~~~~~~~~a~~~~ 178 (374)
|++|++|+++.+++..+
T Consensus 143 i~~i~~p~~i~~ai~~k 159 (160)
T smart00244 143 IKDIRLPEEIQEAMEQQ 159 (160)
T ss_pred EEecCCCHHHHHHHHhh
Confidence 99999999999998754
No 18
>KOG2621|consensus
Probab=99.88 E-value=3.5e-22 Score=185.24 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=137.4
Q ss_pred CCcceE--EecCCceEEEcccceeEEeccCccccccee-eecCCCCccccceEEEEEEEEEeecCchhhHHHhhhhccCC
Q psy6112 26 YNAFKV--LIKSGADMVLYYFQVAAEVAAPLSQTKRVT-MVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHI 102 (374)
Q Consensus 26 ~G~~~~--v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~-~~~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~ 102 (374)
+|+.+. .-+||+.|++|+|++..+||+|++++++++ .+.+.|.+ .|.||+++||||.|+-..+.+ ++.
T Consensus 69 LGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsv----tvsVdAvVyyri~dpi~sv~~-----V~D 139 (288)
T KOG2621|consen 69 LGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSV----TISVDAVVYYRISDPIIAVNN-----VGD 139 (288)
T ss_pred eeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccce----EEEeceEEEEEecCHHHHHHh-----ccC
Confidence 666554 459999999999999999999999887765 33333332 577789999999997655432 333
Q ss_pred CHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhhhhhh
Q psy6112 103 SEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAE 182 (374)
Q Consensus 103 ~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~~Ae 182 (374)
-....+-+.+++| |+++|+.||.|++++|+.++..+...+++.+..||++|.+|+|+||+.|....++|.....|.
T Consensus 140 a~~sTr~lAqttL----rn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqramaaeAeA~ 215 (288)
T KOG2621|consen 140 ADNATRLLAQTTL----RNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAMAAEAEAT 215 (288)
T ss_pred HHHHHHHHHHHHH----HHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhhhchhhhh
Confidence 3466777888887 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy6112 183 VKRDARIGEAEAQKDAR 199 (374)
Q Consensus 183 ~~r~A~i~~Aea~rea~ 199 (374)
|+.+|.+..||+++.+-
T Consensus 216 reA~Akviaaege~~as 232 (288)
T KOG2621|consen 216 REARAKVIAAEGEKKAS 232 (288)
T ss_pred hhhhhhHHHHHhhhHHH
Confidence 99999999999998875
No 19
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.83 E-value=7.8e-20 Score=155.46 Aligned_cols=124 Identities=34% Similarity=0.513 Sum_probs=106.9
Q ss_pred eccCcccccceeeecCCCCccccc--eEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhcccc
Q psy6112 50 VAAPLSQTKRVTMVSSGSGELGAA--KLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMS 127 (374)
Q Consensus 50 v~~r~~~~~~~~~~~s~~~~it~~--~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~t 127 (374)
+|+|++.++. +.+.++|+| ++.||++++|+|.++++++..++.+|++.+...+..++.+++.++||+++|+||
T Consensus 2 ~~lr~~~~~~-----~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~t 76 (128)
T cd03399 2 LSLTSMVLRV-----GSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMT 76 (128)
T ss_pred ccccceeeec-----cccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555554443 333445544 677789999999998888777788888866678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhh
Q psy6112 128 VEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMA 178 (374)
Q Consensus 128 l~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~ 178 (374)
+++++++|+.|++.|.+.+..++++||+.|.+++|++|++|++|++++|+.
T Consensus 77 l~el~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~~ 127 (128)
T cd03399 77 VEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGDA 127 (128)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCCC
Confidence 999999999999999999999999999999999999999999999999874
No 20
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.70 E-value=2.4e-16 Score=144.22 Aligned_cols=165 Identities=10% Similarity=0.052 Sum_probs=121.2
Q ss_pred eecCCCceEeecCCCcccCcCCcceEEecCCceEEE----cccc---------------eeEEeccCcccccc----eee
Q psy6112 6 DAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVL----YYFQ---------------VAAEVAAPLSQTKR----VTM 62 (374)
Q Consensus 6 ~k~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~i----P~i~---------------~v~~v~~r~~~~~~----~~~ 62 (374)
..++|+++-| ++- +|++..++.||+|+++ |++. .+..++.+...... .++
T Consensus 17 ~iV~e~~~av-----~~~--~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 89 (207)
T cd03408 17 LIVREGQAAV-----FVN--EGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPV 89 (207)
T ss_pred EEEcCCcEEE-----EEE--CCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCe
Confidence 4567888555 454 8999999999988777 4442 25566666543211 112
Q ss_pred ecCCCCccccceEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHH--HHHHHH
Q psy6112 63 VSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKD--RKKFSK 140 (374)
Q Consensus 63 ~~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~--R~~~~~ 140 (374)
.+.+ ......+|.+++.+.|+|.|+..++.+.+......+.+.+...+...+.+++|+++|++++++++.+ |+.|++
T Consensus 90 ~~~~-~~~~~v~v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~ 168 (207)
T cd03408 90 FGRD-SEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSK 168 (207)
T ss_pred eeeC-CccceEEEEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHH
Confidence 2211 1111135777888999999887765443221111123578899999999999999999999999998 999999
Q ss_pred HHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhh
Q psy6112 141 QVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMA 178 (374)
Q Consensus 141 ~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~ 178 (374)
.|.+.+.+.+..|||+|+++.|++|++|+++.++|..+
T Consensus 169 ~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 169 AVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 99999999999999999999999999999999888653
No 21
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.52 E-value=1.1e-13 Score=116.91 Aligned_cols=100 Identities=14% Similarity=0.224 Sum_probs=83.8
Q ss_pred eEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHH-HHHHHHHHHHHHHHHhhhc
Q psy6112 74 KLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYK-DRKKFSKQVFQVASSDLVN 152 (374)
Q Consensus 74 ~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~-~R~~~~~~v~~~v~~~l~~ 152 (374)
+|.+|+++.|+|.+ +.... .... +|.+ ....++.+.+.++||+++|++|++++++ +|..|++.|.+.+...+.+
T Consensus 23 ~v~vd~~v~y~V~~-~~~~~-~~~~-~~~~--~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~i~~~i~~~l~~~~~~ 97 (124)
T cd03400 23 SINADVSVQYRINP-NKAAA-VHSK-LGTD--YARKIVRPTFRSLVREVTGRYTAEQIYSTKRKEIESAIKKELIEEFVG 97 (124)
T ss_pred EEEEEEEEEEEECh-hhHHH-HHHH-hCcc--hhheeechhHHHHHHHHhcCCCHHHHhhhhHHHHHHHHHHHHHHHhcc
Confidence 68999999999964 33211 1122 3432 5567888999999999999999999997 7999999999999999999
Q ss_pred cCcEEeEEEeeeccCchhHHHHHhhh
Q psy6112 153 MGITVVSYTLKDIRDDEGYLKSLGMA 178 (374)
Q Consensus 153 ~Gl~i~~v~I~~I~~~~~~~~a~~~~ 178 (374)
||+.|.+++|++|++|+.+.+++..+
T Consensus 98 ~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 98 DGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred CCeEEEEEEEecccCCHHHHHHHHhc
Confidence 99999999999999999999998653
No 22
>KOG3090|consensus
Probab=99.41 E-value=5.8e-12 Score=113.78 Aligned_cols=171 Identities=12% Similarity=0.200 Sum_probs=126.2
Q ss_pred CCcce-EEecCCceEEEcccceeEEeccCcccccceeeecCCCCccccceEEEEEEEEEeec--CchhhHHHhhhhccCC
Q psy6112 26 YNAFK-VLIKSGADMVLYYFQVAAEVAAPLSQTKRVTMVSSGSGELGAAKLTGEILTIVNVM--DEEGHEQKHSTKQNHI 102 (374)
Q Consensus 26 ~G~~~-~v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~~~~s~~~~it~~~v~vd~~~~~rI~--~~~~~~~~a~~~~l~~ 102 (374)
+||.+ .+..-|+||.||||+.....|.|-++..+. ..++...+. .|.+..-+.-|-+ .-|.. ++.||.
T Consensus 53 i~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~--S~tGskDLQ--mVnI~lRVLsRP~~~~Lp~i-----yrtLG~ 123 (290)
T KOG3090|consen 53 IGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLIS--SPTGSKDLQ--MVNIGLRVLSRPMADQLPEI-----YRTLGQ 123 (290)
T ss_pred cccchhccccCCceEeeeccccceeeeeccCccccc--CCCCCccee--EEEeeeEEecCCChhhhHHH-----HHHhcc
Confidence 66644 577789999999999999999877653322 223333332 2333222222211 22222 244665
Q ss_pred C--HHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhhhh
Q psy6112 103 S--EDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMART 180 (374)
Q Consensus 103 ~--~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~~ 180 (374)
| +.-+..++.++| +++++++...++++.|+..+..|++.+-+....|.|-+++|.|+.+++..+|..++..+..
T Consensus 124 ~y~ERVLPSIinEvL----KaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQv 199 (290)
T KOG3090|consen 124 NYDERVLPSIINEVL----KAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQV 199 (290)
T ss_pred CcchhhhHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHH
Confidence 4 455678888887 9999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhHHH-H--HHHHHHHHHHHHHHHHHHHHH
Q psy6112 181 AEVKRDA-R--IGEAEAQKDARIKEAMAEEEK 209 (374)
Q Consensus 181 Ae~~r~A-~--i~~Aea~rea~i~~Aea~~~~ 209 (374)
|..+.+- . +.+|+-++...|.+|+++.++
T Consensus 200 A~QeAqRA~F~VekA~qek~~~ivrAqGEaks 231 (290)
T KOG3090|consen 200 AAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKS 231 (290)
T ss_pred HHHHHhhhhhhhHHHHHhhhhhhhhhccchHH
Confidence 7655432 2 667888888888888887755
No 23
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.29 E-value=7.6e-11 Score=97.20 Aligned_cols=99 Identities=18% Similarity=0.281 Sum_probs=85.4
Q ss_pred eEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy6112 74 KLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNM 153 (374)
Q Consensus 74 ~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~ 153 (374)
+|.+++.+.|+|.++..+++ .+.+.+. ...+...+.+.+|.++++++++++.++|..|.+.|.+.+...+.+|
T Consensus 23 ~i~~~~~~~~~v~~~~~~~~----~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~~~~~ 95 (121)
T cd02106 23 PVRVDAVVQYRVVDPVKALY----NVRDPED---EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKY 95 (121)
T ss_pred EEEEEEEEEEEEeCHHHHHH----hcCCccH---HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 68888999999987653322 3333322 7888899999999999999999999999999999999999999999
Q ss_pred CcEEeEEEeeeccCchhHHHHHhhhh
Q psy6112 154 GITVVSYTLKDIRDDEGYLKSLGMAR 179 (374)
Q Consensus 154 Gl~i~~v~I~~I~~~~~~~~a~~~~~ 179 (374)
|+.|.++.|.++++|+++.+++..++
T Consensus 96 Gi~i~~v~i~~i~~~~~~~~ai~~~~ 121 (121)
T cd02106 96 GIEVVDVRIKDIDPPEEVQEAMEDRQ 121 (121)
T ss_pred CCEEEEEEEEecCCCHHHHHHHHhhC
Confidence 99999999999999999999987653
No 24
>KOG3083|consensus
Probab=99.27 E-value=2e-11 Score=110.27 Aligned_cols=178 Identities=15% Similarity=0.194 Sum_probs=134.6
Q ss_pred cccCcCCcceEEecCCceEEEcccceeEEeccCcccccceeeecCCCCccccceEEEEEEEEEeecCchhhHHHhhhhcc
Q psy6112 21 LFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVTMVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQN 100 (374)
Q Consensus 21 ~~g~~~G~~~~v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~~~~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l 100 (374)
+++|-.|--..+.+.|.||.|||++....+|.|..+-.+ ...++...+++.|+++.+...--++.-|..+. .+
T Consensus 38 ifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v--~~itGskdLQ~VniTlril~rp~~sqLP~If~-----~~ 110 (271)
T KOG3083|consen 38 IFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNV--PVITGSKDLQNVNITLRILFRPVVSQLPCIFT-----SI 110 (271)
T ss_pred EeecccchhhhcccCCceeeeeeccCcEEEeccCCCccc--ccccCchhhhcccceEEEEecccccccchHHH-----hh
Confidence 555433445567889999999999999999977654332 23444455666666665443333344454432 24
Q ss_pred CC--CHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhh
Q psy6112 101 HI--SEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMA 178 (374)
Q Consensus 101 ~~--~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~ 178 (374)
|. |+.-+..+..++| ++++++++..++++.|+-++..|.+.+-.....+|+.++++.|.-+++-.++.+++..+
T Consensus 111 G~dyDErVLpsI~~eiL----KsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~K 186 (271)
T KOG3083|consen 111 GEDYDERVLPSITTEIL----KSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAK 186 (271)
T ss_pred cccccccccccchHHHH----HHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHH
Confidence 44 3444666777777 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHH-H--HHHHHHHHHHHHHHHHHHHHH
Q psy6112 179 RTAEVKRDA-R--IGEAEAQKDARIKEAMAEEEK 209 (374)
Q Consensus 179 ~~Ae~~r~A-~--i~~Aea~rea~i~~Aea~~~~ 209 (374)
..|+.+.+- + +..|+-+|.+.+..|+++.++
T Consensus 187 QVAQQEAErarFvVeKAeQqk~aavIsAEGds~a 220 (271)
T KOG3083|consen 187 QVAQQEAERARFVVEKAEQQKKAAVISAEGDSKA 220 (271)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheeecccchHH
Confidence 888766442 2 667888888888888888765
No 25
>KOG2668|consensus
Probab=99.23 E-value=1.3e-09 Score=104.27 Aligned_cols=221 Identities=24% Similarity=0.273 Sum_probs=149.8
Q ss_pred CCHHHHHHHHHHHHh---HHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhh
Q psy6112 102 ISEDEIQNIALVTLE---GHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMA 178 (374)
Q Consensus 102 ~~~~~i~~~v~~~l~---g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~ 178 (374)
+|++.+...|.++.. |.|.-+|-++|+.|++.+-.. ++|+.+|-.- ...+++ =.+.
T Consensus 120 Kdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~----------~YlssLGka~-taev~r----------dArI 178 (428)
T KOG2668|consen 120 KDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGH----------EYLSSLGKAT-TAEVAR----------DARI 178 (428)
T ss_pred hhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccch----------HHHHHhhhHH-HHHHHh----------hccc
Confidence 578888888888887 788899999999999975531 4788888762 111221 1234
Q ss_pred hhhhhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhhhHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHH
Q psy6112 179 RTAEVKRDARIGEAEAQK---------DARIKEAMAEEEKMAARFVNDTEIAKAQR--DFEIKKATYDAEVETKRAEAEL 247 (374)
Q Consensus 179 ~~Ae~~r~A~i~~Aea~r---------ea~i~~Aea~~~~~~a~~~~e~~iAea~~--~~ei~~a~~~~~~~~a~a~a~~ 247 (374)
-.||.++++-|.+|.+.. ++.|..++.+++..++.++-++...++++ .|+++.+..++.+...
T Consensus 179 gvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV~~~~aEA~lAyelqaak~kq~i~~e------ 252 (428)
T KOG2668|consen 179 GVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDVEVNTNKAEADLAYELQAAKTKQAIREE------ 252 (428)
T ss_pred chHHhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHhh------
Confidence 567777788888887766 46777788888888898888887755444 4788777777665543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhccc-cccchhHH--HHHHHHHHHHHHHHHHHHHH
Q psy6112 248 AFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQR---RKKELESS-VNRPAEAE--KYRIEKLAQANKKRLMIEAE 321 (374)
Q Consensus 248 a~~~~~a~~~~~i~e~~~~~ev~e~~~~i~~~~~e~~~---~e~e~eA~-v~~~AeAe--~~~~~~~AeA~~~~~~~~Ae 321 (374)
+.+.++.++..++.|.+ ++|.....++.. .+.+++.. ..+-|||. +|-.+++|||.+++ ..++
T Consensus 253 -------~~qV~vVEr~kqvAv~e--qEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~qaqAEA~~ir--k~ge 321 (428)
T KOG2668|consen 253 -------EIQVAVVERTKQVAVRE--QEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQAQAEAELIR--KQGE 321 (428)
T ss_pred -------hhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh
Confidence 23445556666666654 566666666653 33333331 24455554 55555556666554 4678
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q psy6112 322 AEAEAIRLKGEAEAAAIAAKARA-----EVEIMTKKAEAWKDYR 360 (374)
Q Consensus 322 AeA~~i~~~g~AeA~ai~~~~~A-----eAe~~~~~aea~~~~~ 360 (374)
|||.+|.+.|.|||+.+.+++++ +|--|+..-+++...+
T Consensus 322 AEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l~~lLealp~Ia 365 (428)
T KOG2668|consen 322 AEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYLRTLLEALPMIA 365 (428)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 89999999999999999988764 4455777777777544
No 26
>KOG2962|consensus
Probab=98.78 E-value=3.5e-07 Score=83.50 Aligned_cols=206 Identities=14% Similarity=0.205 Sum_probs=116.5
Q ss_pred ceEEecCCceEEEcccceeEEeccCcccccce---eeecCCCCccccceEEEEEEEEEeecCchhhHHHhhhhccCCCHH
Q psy6112 29 FKVLIKSGADMVLYYFQVAAEVAAPLSQTKRV---TMVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISED 105 (374)
Q Consensus 29 ~~~v~~pGl~f~iP~i~~v~~v~~r~~~~~~~---~~~~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~ 105 (374)
...+.+||+|+.+|||-+...|..-++ +|.. ++-+++. + .+++|-.-.+..- .+++++.-..+|.- +
T Consensus 41 L~~~t~PG~Hl~lPFiTt~ksVQvTLQ-TDev~nvPCGTsGG-V----lIyfdrIEVVN~L-~~d~Vydiv~NYtv---d 110 (322)
T KOG2962|consen 41 LTSITGPGFHLMLPFITTYKSVQVTLQ-TDEVKNVPCGTSGG-V----LIYFDRIEVVNFL-RPDAVYDIVKNYTV---D 110 (322)
T ss_pred eeccCCCCcEEEeeeeeceeeeEEEee-ccccccCCCCCCCc-E----EEEEehhhhhhhh-chhHHHHHHHHccc---C
Confidence 556889999999999977776553333 2322 2333432 2 2344321112211 23344444445432 2
Q ss_pred HHHHHHHHHHhHHHHhhhccccHHHHHHH-HHHHHHHHHHHHHHhhhcc--CcEEeEEEeeeccCchhHHHHHhhhhhhh
Q psy6112 106 EIQNIALVTLEGHQRAIMGSMSVEDIYKD-RKKFSKQVFQVASSDLVNM--GITVVSYTLKDIRDDEGYLKSLGMARTAE 182 (374)
Q Consensus 106 ~i~~~v~~~l~g~lR~vig~~tl~ei~~~-R~~~~~~v~~~v~~~l~~~--Gl~i~~v~I~~I~~~~~~~~a~~~~~~Ae 182 (374)
.=..++.+.+...+-...+..||.+++-+ -+.+.+.++..+..+|..| |+.|.+|++..-..|+.+..+. ..|.++
T Consensus 111 YD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~-E~ME~E 189 (322)
T KOG2962|consen 111 YDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNF-ELMEAE 189 (322)
T ss_pred CcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhH-HHHHHH
Confidence 23456667777777888899999998865 6788889999999998765 8999999999888888776665 345555
Q ss_pred hhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy6112 183 VKRD--------ARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAEL 247 (374)
Q Consensus 183 ~~r~--------A~i~~Aea~rea~i~~Aea~~~~~~a~~~~e~~iAea~~~~ei~~a~~~~~~~~a~a~a~~ 247 (374)
+.+- --..+|+.+|...+ .++++.++++++.-...+-+-+.+..+..-+...-....++.||.
T Consensus 190 kTKlLiA~ekQkVvEKeAETerkkAv--iEAEK~AqVa~I~~qqkl~EKetekr~~eiE~~~~LarekskADA 260 (322)
T KOG2962|consen 190 KTKLLIAAEKQKVVEKEAETERKKAV--IEAEKNAQVAKILMQQKLMEKETEKRISEIEDAAFLAREKSKADA 260 (322)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhhhhhhccH
Confidence 4321 11223333333333 233333444444444444444444443333444444444444443
No 27
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=98.62 E-value=3.3e-06 Score=77.97 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=108.7
Q ss_pred cCCCce-EeecCCCcccCcCCcceEEecCCceEE----Ec---------------ccceeEEeccCccc-ccc---eeee
Q psy6112 8 VTPNLC-WSQEEEPLFGPQYNAFKVLIKSGADMV----LY---------------YFQVAAEVAAPLSQ-TKR---VTMV 63 (374)
Q Consensus 8 ~~~~~~-~v~~~~~~~g~~~G~~~~v~~pGl~f~----iP---------------~i~~v~~v~~r~~~-~~~---~~~~ 63 (374)
|.|+|+ +. +++ |+.--+.+||-|-+ +| |-..++.++++... ... .++.
T Consensus 19 V~egQ~Avf-----v~~---G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~ 90 (211)
T PF13421_consen 19 VREGQCAVF-----VND---GKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIP 90 (211)
T ss_pred ECCCCEEEE-----EEC---CEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCee
Confidence 567773 33 444 77666888887644 23 33456666655431 111 1122
Q ss_pred cCCCCccccceEEEEEEEEEeecCchhhHHHhhhhccCC----CHHHHHHHHHHHHhHHHHhhhcc--ccHHHHHHHHHH
Q psy6112 64 SSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHI----SEDEIQNIALVTLEGHQRAIMGS--MSVEDIYKDRKK 137 (374)
Q Consensus 64 ~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~----~~~~i~~~v~~~l~g~lR~vig~--~tl~ei~~~R~~ 137 (374)
..+ .....-+|..-+...++|.|+..++. +++|. +.+.+.+.+...+...+-..++. +++.+|-..-.+
T Consensus 91 ~~D-~~~~~v~lra~G~ys~rI~Dp~~F~~----~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~e 165 (211)
T PF13421_consen 91 YRD-PEYGPVRLRAFGTYSFRIVDPVLFIR----NLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDE 165 (211)
T ss_pred ecC-CCCCcEEEEEEEEEEEEEeCHHHHHH----hhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 222 22222244555667788988777654 34443 45777778888777777777775 799999999999
Q ss_pred HHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhh
Q psy6112 138 FSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMA 178 (374)
Q Consensus 138 ~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~ 178 (374)
+++.+.+.+++.+..+||+|.++.|.+|+.|++..+.|.++
T Consensus 166 is~~~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~ 206 (211)
T PF13421_consen 166 ISEALKEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKR 206 (211)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999887776443
No 28
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.44 E-value=4e-05 Score=78.90 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhH---HHHhhhccccHHHHHHH-HHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhh
Q psy6112 103 SEDEIQNIALVTLEG---HQRAIMGSMSVEDIYKD-RKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMA 178 (374)
Q Consensus 103 ~~~~i~~~v~~~l~g---~lR~vig~~tl~ei~~~-R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~ 178 (374)
++..+...+.+++.+ .+.-+|-++.+.++..+ .+. ..=+.+|+.||.. .|..+.-+.. .
T Consensus 163 dR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~------~d~~~yLda~G~r----~i~qv~~~a~-------i 225 (548)
T COG2268 163 DRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKEN------QDPNNYLDALGRR----RIAQVLQDAE-------I 225 (548)
T ss_pred HHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccc------cChhhhhhhcChH----HHHHHHHHHH-------H
Confidence 556677777777764 44466667777777643 111 1113478999988 4444443322 3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy6112 179 RTAEVKRDARIGEAEAQKDARIKEAM 204 (374)
Q Consensus 179 ~~Ae~~r~A~i~~Aea~rea~i~~Ae 204 (374)
...+..+...|..+++.+++.....+
T Consensus 226 a~~E~~~~t~i~i~~a~~~a~~~e~~ 251 (548)
T COG2268 226 AENEAEKETEIAIAEANRDAKLVELE 251 (548)
T ss_pred HHhhhhhhhHHHHHhhhhHHHHHhhh
Confidence 44555566666666666655444433
No 29
>PTZ00491 major vault protein; Provisional
Probab=98.34 E-value=0.0015 Score=70.31 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=88.4
Q ss_pred eecCCCceEeecCCCcccCcCCcceEEecCCceEEEccc-ceeEEeccC-------ccc----------ccceeeecCCC
Q psy6112 6 DAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYF-QVAAEVAAP-------LSQ----------TKRVTMVSSGS 67 (374)
Q Consensus 6 ~k~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP~i-~~v~~v~~r-------~~~----------~~~~~~~~s~~ 67 (374)
.+++.|.+.= ||+-+-|+-+++++|-+.|.=|-= -++-.+|.- +.+ +|...+.|+|.
T Consensus 465 ~~vphn~avq-----vydyk~~~~Rvv~GP~~v~L~pdE~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~Dh 539 (850)
T PTZ00491 465 YKVPHNAAVQ-----LYDYKTKKSRVVFGPDLVMLEPDEEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDH 539 (850)
T ss_pred EEcCCCcEEE-----EEEcccCceEEEECCceEEecCCCceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEccc
Confidence 3567777776 888777888999999987777752 122222210 111 12222334433
Q ss_pred CccccceEEEEEEEEEeecC-chhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHH-HHHHHHHH
Q psy6112 68 GELGAAKLTGEILTIVNVMD-EEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKK-FSKQVFQV 145 (374)
Q Consensus 68 ~~it~~~v~vd~~~~~rI~~-~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~-~~~~v~~~ 145 (374)
..+ .+.+.-.+.|.|++ ++. .+..-|.. ..+--.+..+|.+.+|..+++.++++.+.+-.. +.+.|+..
T Consensus 540 ArL---~l~LsYnW~F~v~~~d~~---~~~k~Fsv---~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~ 610 (850)
T PTZ00491 540 ARL---ALQLSYNWYFDVTDGNPE---DAQKCFSV---PDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGS 610 (850)
T ss_pred ceE---EEEEEEEEEEecCCCChh---hHhheecc---CchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccC
Confidence 221 23333344444532 221 11112211 123333445666777999999999999875443 33344432
Q ss_pred HHH--------hhhccCcEEeEEEeeeccCch-hHHHHHhhh
Q psy6112 146 ASS--------DLVNMGITVVSYTLKDIRDDE-GYLKSLGMA 178 (374)
Q Consensus 146 v~~--------~l~~~Gl~i~~v~I~~I~~~~-~~~~a~~~~ 178 (374)
.++ .+...|+-|++|.|++|.+-+ ...++|.+-
T Consensus 611 ~~e~~~~r~~l~F~~N~lvit~VDvqsvEpvD~~tr~~LqkS 652 (850)
T PTZ00491 611 NDETGEVRDSLRFPANNLVITNVDVQSVEPVDERTRDSLQKS 652 (850)
T ss_pred cCCCCccccceEEccCCeEEEEEeeeeeeecCHHHHHHHHHH
Confidence 222 236889999999999999854 455666443
No 30
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=97.36 E-value=0.0032 Score=59.65 Aligned_cols=134 Identities=13% Similarity=0.060 Sum_probs=91.8
Q ss_pred cccceeEEeccCccc-ccc---eeeecCCCCccccceEEEEEEEEEeecCchhhHHHhhhhccCC----CHHHHHHHHHH
Q psy6112 42 YYFQVAAEVAAPLSQ-TKR---VTMVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHI----SEDEIQNIALV 113 (374)
Q Consensus 42 P~i~~v~~v~~r~~~-~~~---~~~~~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~----~~~~i~~~v~~ 113 (374)
|+=+.|+.|+++... +.. .++...++..-.--++...+...|+|.||-.+ +.. ..|. +.++|...+..
T Consensus 91 p~k~eVyfvntqe~~girwGT~qpin~~dn~~~g~l~lRa~Gtys~kvtDpi~f-i~~---I~g~~dvy~v~di~~q~ls 166 (345)
T COG4260 91 PFKQEVYFVNTQEIKGIRWGTPQPINYFDNFYNGELFLRAHGTYSIKVTDPILF-IQQ---IPGNRDVYTVDDINQQYLS 166 (345)
T ss_pred cccceEEEEecceecceecCCCCCeecccccccceeEEeecceEEEEecCHHHH-HHh---ccCCCceEEHHHHHHHHHH
Confidence 334667777765543 111 22333332211112344456667888876553 332 2222 35788888888
Q ss_pred HHhHHHHhhhcccc--HHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhhh
Q psy6112 114 TLEGHQRAIMGSMS--VEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMAR 179 (374)
Q Consensus 114 ~l~g~lR~vig~~t--l~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~ 179 (374)
.+-+.|-..|+.+- +-.+-++--.++..+.+.+++++..+|+.|++|.|.+|+.|++....+.++.
T Consensus 167 ~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 167 EFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN 234 (345)
T ss_pred HHHHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence 88899999998864 3466667789999999999999999999999999999999999888776553
No 31
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.98 E-value=0.0043 Score=58.05 Aligned_cols=48 Identities=25% Similarity=0.178 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 316 LMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAA 363 (374)
Q Consensus 316 ~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa 363 (374)
....|+|++++....++|+|++...+|+++|++.+.++++|++.-+-.
T Consensus 182 ~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~ 229 (242)
T cd03405 182 ERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFY 229 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHH
Confidence 334555566666666666666666677777777777888887654333
No 32
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=96.92 E-value=0.0072 Score=57.39 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6112 308 LAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILE 370 (374)
Q Consensus 308 ~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa~~~~~~~ 370 (374)
+|++++...+.+|+++|+.++..++|++++...+++++|+++...++||.+..+.....+.++
T Consensus 171 ~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le 233 (261)
T TIGR01933 171 EAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLE 233 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 344444455556667777766777777777777777888888888888877655554444444
No 33
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=96.65 E-value=0.014 Score=55.63 Aligned_cols=54 Identities=33% Similarity=0.240 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 304 RIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWK 357 (374)
Q Consensus 304 ~~~~~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~ 357 (374)
+...+||+++...+..|+|+|++....|++.|++....++++++.+....++|.
T Consensus 161 a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~ 214 (262)
T cd03407 161 AAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVP 214 (262)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455566656666777777777777777777777778888888888887773
No 34
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=96.54 E-value=0.015 Score=57.06 Aligned_cols=55 Identities=24% Similarity=0.112 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6112 316 LMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILE 370 (374)
Q Consensus 316 ~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa~~~~~~~ 370 (374)
....++|++++.+..++|++++...+|++||++.+..+++|.+.-+-.-..+.++
T Consensus 237 ~~i~a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le 291 (317)
T TIGR01932 237 EEILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLE 291 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3334555555555555666666777777788888888888877655444344444
No 35
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=96.32 E-value=0.026 Score=55.70 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 307 KLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAA 363 (374)
Q Consensus 307 ~~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa 363 (374)
..|+|+++.....++|+.+..+..++|++++...+|+++|++.+..+++|.+.-+-.
T Consensus 238 ~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~ 294 (334)
T PRK11029 238 HRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFY 294 (334)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHH
Confidence 345555555555555666666656666666666677777788888888887554443
No 36
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=94.55 E-value=0.28 Score=50.00 Aligned_cols=64 Identities=22% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6112 308 LAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILES 371 (374)
Q Consensus 308 ~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa~~~~~~~~ 371 (374)
+|++.+.+.+-+|+++|+.+...++|..++...+++++|+...+.-.+|++.-+-.-..|+||.
T Consensus 267 eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~kaP~vtr~RlYlet 330 (419)
T PRK10930 267 EAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYIET 330 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555665555555577766555555566654
No 37
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=92.31 E-value=0.73 Score=43.72 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy6112 304 RIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILESLP 373 (374)
Q Consensus 304 ~~~~~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa~~~~~~~~lp 373 (374)
+.+.+|++++.+.+..|+++|++++..++|++++...+++++|+.+...+++|++..+.....++++.|+
T Consensus 194 ~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~ 263 (266)
T cd03404 194 RLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKKAPDVTRERLYLETME 263 (266)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3334456666667778889999999999999999999999999999999999999877777788887765
No 38
>KOG2620|consensus
Probab=91.59 E-value=1.6 Score=41.31 Aligned_cols=67 Identities=22% Similarity=0.131 Sum_probs=58.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 296 RPAEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREA 362 (374)
Q Consensus 296 ~~AeAe~~~~~~~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~a 362 (374)
.++|++|......||+++...+...++.+.....+...||+++.+++.+-|.++.+.+..+.+.|-.
T Consensus 178 lesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~ 244 (301)
T KOG2620|consen 178 LESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLKQEGGV 244 (301)
T ss_pred hhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHHHhcch
Confidence 3578888888899999999999999999998889999999999999999999999999998855543
No 39
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=89.77 E-value=2.2 Score=38.96 Aligned_cols=47 Identities=28% Similarity=0.273 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy6112 298 AEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARA 344 (374)
Q Consensus 298 AeAe~~~~~~~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~A 344 (374)
|+++..++..+|+.+..+++.+|+++|+.|..+++.+|+-.......
T Consensus 20 A~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~s 66 (198)
T PRK01558 20 AERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRHALE 66 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555566666666655555555544444333
No 40
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=86.12 E-value=25 Score=31.54 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhC
Q psy6112 331 GEAEAAAIAAKARAEVEIMTKKAEAWKDYREAA--VIDMILESL 372 (374)
Q Consensus 331 g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa--~~~~~~~~l 372 (374)
.+|++++...+.+++++.-..+.++.+...+.+ +...++++|
T Consensus 119 ~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA~~i~~kL 162 (181)
T PRK13454 119 AKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAAL 162 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455555555566666665544 334444433
No 41
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=86.01 E-value=13 Score=33.92 Aligned_cols=40 Identities=38% Similarity=0.432 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy6112 308 LAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVE 347 (374)
Q Consensus 308 ~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe 347 (374)
+|+.+...++.+|+++|+.|...++++|+.|..+++.+|+
T Consensus 19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 19 EAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555556666666666666666555555554
No 42
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=2.8 Score=40.19 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy6112 344 AEVEIMTKKAEAWKD 358 (374)
Q Consensus 344 AeAe~~~~~aea~~~ 358 (374)
|+++.++....++..
T Consensus 230 a~~~~~~~~~~~~~~ 244 (291)
T COG0330 230 AEADAAKIIAAALRE 244 (291)
T ss_pred hccHHHHHHHhhccc
Confidence 333333333333333
No 43
>PTZ00121 MAEBL; Provisional
Probab=84.23 E-value=96 Score=36.63 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=5.2
Q ss_pred eecCCCceE
Q psy6112 6 DAVTPNLCW 14 (374)
Q Consensus 6 ~k~~~~~~~ 14 (374)
.||||.--|
T Consensus 908 tKCPPR~PL 916 (2084)
T PTZ00121 908 EKCPPRFPL 916 (2084)
T ss_pred ccCCCCCCC
Confidence 567775433
No 44
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=83.98 E-value=35 Score=31.35 Aligned_cols=41 Identities=37% Similarity=0.253 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 321 EAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAA 363 (374)
Q Consensus 321 eAeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa 363 (374)
+++++.++.+.+++++.+. .+|+.+.-..+..++......+
T Consensus 133 ~~~~e~~~~~a~~ea~~~l--~~Ae~~I~~ek~~A~~el~~~a 173 (204)
T PRK09174 133 KAKAEAERAAIEASLEKKL--KEAEARIAAIKAKAMADVGSIA 173 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443 4455555555666666666555
No 45
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=83.74 E-value=39 Score=31.77 Aligned_cols=64 Identities=25% Similarity=0.261 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy6112 310 QANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVE----------IMTKKAEAWKDYREAAVIDMILESLP 373 (374)
Q Consensus 310 eA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe----------~~~~~aea~~~~~~aa~~~~~~~~lp 373 (374)
+..+...+.+|..+|+.+...+.++.+....+...+.. +-+...+-+....+..+++.+|+.||
T Consensus 85 ~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~~~~d~~~~~~lid~~i~~l~ 158 (246)
T TIGR03321 85 QAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADTDLEERMVDVFVQRLR 158 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhh
Confidence 33344444455555555555444444443333322211 12222233344555567777776554
No 46
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=83.33 E-value=42 Score=31.80 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy6112 308 LAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVE----------IMTKKAEAWKDYREAAVIDMILESLP 373 (374)
Q Consensus 308 ~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe----------~~~~~aea~~~~~~aa~~~~~~~~lp 373 (374)
+|+..+.....+|..+|+.++..+.++.+..+.+...+.. +-+...+-.....+..+++.+++.|+
T Consensus 83 eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~~~~d~~~~~~lid~~i~~l~ 158 (250)
T PRK14474 83 AADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALADLANATLEQQIVGIFIARLE 158 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Confidence 3444444455555556666655555554444433333221 11222223344445566666665553
No 47
>PTZ00491 major vault protein; Provisional
Probab=83.12 E-value=82 Score=35.01 Aligned_cols=30 Identities=7% Similarity=-0.105 Sum_probs=20.0
Q ss_pred ecCCCceEeecCCCcccCcCCcceEEecCCceEEEc
Q psy6112 7 AVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLY 42 (374)
Q Consensus 7 k~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP 42 (374)
.++.|+.+- |++.+.|+.|+|.+| +.|.=|
T Consensus 379 ~l~~NegVy-----VrD~kTgkvRvV~Gp-~yML~p 408 (850)
T PTZ00491 379 PLDENEGIY-----VRNITTGEVRAVHGK-PYMLGA 408 (850)
T ss_pred ecCCCCEEE-----EEECCCCcEEEEECC-cccCCC
Confidence 456677666 777677777777777 555444
No 48
>PTZ00121 MAEBL; Provisional
Probab=80.76 E-value=1.3e+02 Score=35.67 Aligned_cols=11 Identities=27% Similarity=0.488 Sum_probs=4.9
Q ss_pred CCcccCcCCcc
Q psy6112 19 EPLFGPQYNAF 29 (374)
Q Consensus 19 ~~~~g~~~G~~ 29 (374)
.|+..-.||-|
T Consensus 914 ~PLkn~kFG~~ 924 (2084)
T PTZ00121 914 FPLKSKSFGIF 924 (2084)
T ss_pred CCCCCCceeeE
Confidence 34444345544
No 49
>KOG2962|consensus
Probab=78.31 E-value=18 Score=33.89 Aligned_cols=19 Identities=53% Similarity=0.508 Sum_probs=14.4
Q ss_pred cchhHHHHHHHHHHHHHHH
Q psy6112 296 RPAEAEKYRIEKLAQANKK 314 (374)
Q Consensus 296 ~~AeAe~~~~~~~AeA~~~ 314 (374)
..|||+.|+..+.|++.+.
T Consensus 256 skADAe~Y~a~k~AeaNKl 274 (322)
T KOG2962|consen 256 SKADAEYYRALKEAEANKL 274 (322)
T ss_pred hhccHHHHHHHHHHhhccc
Confidence 5688888888888777644
No 50
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=77.45 E-value=57 Score=31.47 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=43.3
Q ss_pred hccCC-CHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchh
Q psy6112 98 KQNHI-SEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEG 170 (374)
Q Consensus 98 ~~l~~-~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~ 170 (374)
++.|. .++.+-.++. +|-+-.+-++-|-.+++.+-+.++..|.+. .--.+--.+|.|+.|-||+.-.+
T Consensus 156 rLVGGAgEeTIiARVG---EgIVttiGSa~~hk~VLEnPd~ISk~VL~k--gLDagTAFeIlSIDIaDidVG~N 224 (316)
T PF12127_consen 156 RLVGGAGEETIIARVG---EGIVTTIGSAESHKEVLENPDSISKTVLEK--GLDAGTAFEILSIDIADIDVGEN 224 (316)
T ss_pred HhccCCCcHHHHHHHc---cceeeeeccchhHHHHhcCHHHHHHHHHhh--CCCcCceeEEEEeeeeccccchh
Confidence 44554 4444444444 344455556678889999999988888754 11234457788888888776643
No 51
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=77.30 E-value=40 Score=27.83 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy6112 331 GEAEAAAIAAKARAEVEIMTKK 352 (374)
Q Consensus 331 g~AeA~ai~~~~~AeAe~~~~~ 352 (374)
++.+|..|...|++++..|..+
T Consensus 67 ~e~ea~eI~~~ae~~~~~~~~k 88 (108)
T COG2811 67 AEEEAEEILAEAEKEASAILSK 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 52
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=71.74 E-value=28 Score=32.03 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy6112 306 EKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEV 346 (374)
Q Consensus 306 ~~~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeA 346 (374)
..+|..++..++.+|..+|+.+...+..+++....+..+.+
T Consensus 33 l~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a 73 (207)
T PRK01005 33 VHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESAL 73 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343334445555556666666666655555555444444
No 53
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=70.43 E-value=98 Score=29.26 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=17.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 324 AEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAA 363 (374)
Q Consensus 324 A~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa 363 (374)
.+.+...+..+|+.+.. .+.++.-..+..+++.....+
T Consensus 88 ~~~il~~A~~ea~~~~~--~a~~~ie~Ek~~a~~~L~~~v 125 (250)
T PRK14474 88 RQHLLNEAREDVATARD--EWLEQLEREKQEFFKALQQQT 125 (250)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443 344444444555555544433
No 54
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=69.53 E-value=75 Score=27.57 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 340 AKARAEVEIMTKKAEAWKDYREA 362 (374)
Q Consensus 340 ~~~~AeAe~~~~~aea~~~~~~a 362 (374)
....|+++....+..+.+.....
T Consensus 119 ~~~~a~~~i~~ek~~a~~~l~~~ 141 (156)
T CHL00118 119 LLNEATKQLEAQKEKALKSLEEQ 141 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555444443
No 55
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=68.39 E-value=52 Score=27.52 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=38.4
Q ss_pred HHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHH--------hhhccCcEEeEEEeeeccC
Q psy6112 111 ALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASS--------DLVNMGITVVSYTLKDIRD 167 (374)
Q Consensus 111 v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~--------~l~~~Gl~i~~v~I~~I~~ 167 (374)
+...|.+.+|..+++.+.++-+.+-..+...-.=..++ .+...|+-|+++.|++|.+
T Consensus 52 ~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 52 ACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDENGEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCCCCccceeEEcCCCeEEEEEeeeEecc
Confidence 34556677799999999999987654432221111111 2367899999999999865
No 56
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=67.94 E-value=30 Score=31.28 Aligned_cols=6 Identities=17% Similarity=0.119 Sum_probs=2.7
Q ss_pred ccCchh
Q psy6112 165 IRDDEG 170 (374)
Q Consensus 165 I~~~~~ 170 (374)
|.||..
T Consensus 69 I~d~~~ 74 (215)
T cd03403 69 VVDPVK 74 (215)
T ss_pred EecHHH
Confidence 445543
No 57
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=66.77 E-value=90 Score=27.42 Aligned_cols=7 Identities=14% Similarity=0.482 Sum_probs=2.6
Q ss_pred HHHHHHh
Q psy6112 364 VIDMILE 370 (374)
Q Consensus 364 ~~~~~~~ 370 (374)
+++.+|+
T Consensus 154 lid~~i~ 160 (167)
T PRK14475 154 LVDAAIG 160 (167)
T ss_pred HHHHHHH
Confidence 3333333
No 58
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=66.30 E-value=1.1e+02 Score=28.20 Aligned_cols=57 Identities=19% Similarity=0.164 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy6112 305 IEKLAQANKKRLMIEAEAEAEAIRLKGE--AEAAAIAAKARAEVEIMT-KKAEAWKDYRE 361 (374)
Q Consensus 305 ~~~~AeA~~~~~~~~AeAeA~~i~~~g~--AeA~ai~~~~~AeAe~~~-~~aea~~~~~~ 361 (374)
+..+|..+..+.+..|+.+++..+.+.. ++=.+-.....+.-+.+. .-.++++..-.
T Consensus 43 Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~~vf~~a~~~lv~ 102 (207)
T PRK01005 43 IIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENKIFRESLGEWLE 102 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333333 333333344444444333 23344444333
No 59
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=66.12 E-value=95 Score=27.46 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy6112 357 KDYREAAVIDMILESLP 373 (374)
Q Consensus 357 ~~~~~aa~~~~~~~~lp 373 (374)
..-.+..+++..|+.++
T Consensus 155 ~~~~~~~lI~~~i~~~~ 171 (173)
T PRK13453 155 SEQDQKALVDKYLKEAG 171 (173)
T ss_pred CHHHHHHHHHHHHHhhC
Confidence 33445556666666654
No 60
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=64.35 E-value=1e+02 Score=27.18 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q psy6112 317 MIEAEAEAEAIRLKGEAEA 335 (374)
Q Consensus 317 ~~~AeAeA~~i~~~g~AeA 335 (374)
+..|..+++.+..++..++
T Consensus 109 i~~A~~ea~~~~~~a~~~i 127 (167)
T PRK08475 109 EKQTKDDIENLIKSFEELM 127 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433333
No 61
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=63.21 E-value=45 Score=29.78 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6112 312 NKKRLMIEAEAEAEAIRLK 330 (374)
Q Consensus 312 ~~~~~~~~AeAeA~~i~~~ 330 (374)
+......+|+.+|+.+...
T Consensus 28 ~~~~i~~ea~~~a~~i~~~ 46 (188)
T PRK02292 28 EAEEIIAEAEADAEEILED 46 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 62
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=61.40 E-value=1.3e+02 Score=27.49 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhCC
Q psy6112 356 WKDYREAAVIDMILESLP 373 (374)
Q Consensus 356 ~~~~~~aa~~~~~~~~lp 373 (374)
+....+..+++-+|+.||
T Consensus 184 ld~~~~~~lI~~~i~~l~ 201 (205)
T PRK06231 184 VDREDDDKLVDEFIRELE 201 (205)
T ss_pred CCHHHHHHHHHHHHHHcc
Confidence 455556667777777776
No 63
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=60.82 E-value=1.5e+02 Score=27.84 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=16.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 322 AEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYR 360 (374)
Q Consensus 322 AeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~ 360 (374)
.+.+.+...+..+|+.+...+ ..+....+..++....
T Consensus 86 ~~~~~i~~~A~~ea~~~~~~a--~~~ie~E~~~a~~~l~ 122 (246)
T TIGR03321 86 AERQRLLDEAREEADEIREKW--QEALRREQAALSDELR 122 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 334444444455555554443 3444444444444443
No 64
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=60.67 E-value=1.1e+02 Score=26.44 Aligned_cols=19 Identities=5% Similarity=0.139 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q psy6112 355 AWKDYREAAVIDMILESLP 373 (374)
Q Consensus 355 a~~~~~~aa~~~~~~~~lp 373 (374)
-+..-.+..+++..|+.|+
T Consensus 140 ~~~~~~~~~li~~~i~~~~ 158 (159)
T PRK13461 140 SIDESEHRRLIKDFISKVG 158 (159)
T ss_pred HcCHHHHHHHHHHHHhHcC
Confidence 3344455556666666553
No 65
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=60.46 E-value=50 Score=29.76 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy6112 315 RLMIEAE 321 (374)
Q Consensus 315 ~~~~~Ae 321 (374)
++..+|+
T Consensus 31 ei~~ea~ 37 (185)
T PRK01194 31 KLEKECD 37 (185)
T ss_pred HHHHHHH
Confidence 3333333
No 66
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=58.79 E-value=1.3e+02 Score=26.55 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q psy6112 355 AWKDYREAAVIDMILESLP 373 (374)
Q Consensus 355 a~~~~~~aa~~~~~~~~lp 373 (374)
.+....+..+++-.|+.|+
T Consensus 151 ~l~~~~~~~lid~~i~~~~ 169 (173)
T PRK13460 151 QLKKEDYKAFIETELAKLG 169 (173)
T ss_pred HCCHHHHHHHHHHHHHHcc
Confidence 3344455556666666655
No 67
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=58.14 E-value=47 Score=29.69 Aligned_cols=38 Identities=34% Similarity=0.367 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy6112 307 KLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARA 344 (374)
Q Consensus 307 ~~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~A 344 (374)
.+|+.+..++..+|+++++.+.+.+..+|+.+...+..
T Consensus 12 ~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~ 49 (188)
T PRK02292 12 DEARARASEIRAEADEEAEEIIAEAEADAEEILEDREA 49 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566666666666666666655444333
No 68
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=57.66 E-value=2.3e+02 Score=29.15 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhCC
Q psy6112 359 YREAAVIDMILESLP 373 (374)
Q Consensus 359 ~~~aa~~~~~~~~lp 373 (374)
..+..+++.+|+.|+
T Consensus 141 ~~~~~lId~~i~~l~ 155 (445)
T PRK13428 141 AQQSATVDRFLDELD 155 (445)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334567777776553
No 69
>PRK13665 hypothetical protein; Provisional
Probab=56.08 E-value=1.2e+02 Score=29.15 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=49.3
Q ss_pred ccceEEEEEEEEEeecCchhhHHHhhhhccCC-CHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHh
Q psy6112 71 GAAKLTGEILTIVNVMDEEGHEQKHSTKQNHI-SEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSD 149 (374)
Q Consensus 71 t~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~-~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~ 149 (374)
.+|-+.+.+-+.+.|... .+++.|. .++.+-.++. +|-+-++-++-+-.+++.+-+.++..|...-
T Consensus 141 AkdGIql~~kARVTVRaN-------i~rLVGGAgEeTIiARVG---EgIVttIGSa~~hk~VLEnPd~ISk~VL~kG--- 207 (316)
T PRK13665 141 AKDGIEVKAKARVTVRAN-------IDRLVGGAGEETIIARVG---EGIVSTIGSSESHKEVLENPDSISKTVLSKG--- 207 (316)
T ss_pred cccCeEEEEEEEEEeehh-------HHHHhCCCcceeeEeeec---CceeecccCcchHHHHhcCHHHHHHHHHhcc---
Confidence 344455544444444321 2244553 3333433333 3334555566788899999998887776432
Q ss_pred h-hccCcEEeEEEeeeccCchh
Q psy6112 150 L-VNMGITVVSYTLKDIRDDEG 170 (374)
Q Consensus 150 l-~~~Gl~i~~v~I~~I~~~~~ 170 (374)
| .+--.+|.|+.|-||+.-.+
T Consensus 208 LDagTAFeIlSIDIADvdVG~N 229 (316)
T PRK13665 208 LDAGTAFEILSIDIADVDVGKN 229 (316)
T ss_pred CCcCceeEEEEEeeeccccchh
Confidence 3 23446788888888776643
No 70
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=54.30 E-value=25 Score=31.38 Aligned_cols=11 Identities=55% Similarity=0.773 Sum_probs=4.1
Q ss_pred HHHHHHHHhHH
Q psy6112 323 EAEAIRLKGEA 333 (374)
Q Consensus 323 eA~~i~~~g~A 333 (374)
++..++|+|+|
T Consensus 183 ~~~~~~A~gea 193 (196)
T cd03401 183 QAAVIRAEGEA 193 (196)
T ss_pred HHHHHHhhhhh
Confidence 33333333333
No 71
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=53.61 E-value=1.6e+02 Score=26.00 Aligned_cols=49 Identities=8% Similarity=0.123 Sum_probs=38.7
Q ss_pred HhHHHHhhhccccHHHHHH--HHHHHHHHHHHHHHHhhhccCcEEeEEEeee
Q psy6112 115 LEGHQRAIMGSMSVEDIYK--DRKKFSKQVFQVASSDLVNMGITVVSYTLKD 164 (374)
Q Consensus 115 l~g~lR~vig~~tl~ei~~--~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~ 164 (374)
+...+...+++.|.+++-+ .++.+..++++.++..|..=| .|.+|-+.+
T Consensus 105 vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~V~dV~fT~ 155 (159)
T COG1580 105 VRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-VVKDVLFTN 155 (159)
T ss_pred HHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-eeEEEeeeh
Confidence 3444488999999999987 599999999999999988765 555655544
No 72
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=52.65 E-value=1.6e+02 Score=25.89 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=4.5
Q ss_pred HHHHHHHhhC
Q psy6112 363 AVIDMILESL 372 (374)
Q Consensus 363 a~~~~~~~~l 372 (374)
.+++..|+.|
T Consensus 161 ~li~~~i~~l 170 (175)
T PRK14472 161 KVVDSMIQDL 170 (175)
T ss_pred HHHHHHHHHh
Confidence 3444444444
No 73
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=51.80 E-value=1.6e+02 Score=25.57 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy6112 357 KDYREAAVIDMILESLP 373 (374)
Q Consensus 357 ~~~~~aa~~~~~~~~lp 373 (374)
..-.+..+++-.|+.|+
T Consensus 145 ~~~~~~~li~~~i~~~~ 161 (164)
T PRK14473 145 QARGHDALIAESLAALG 161 (164)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 33444445555555554
No 74
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=50.67 E-value=1.8e+02 Score=25.67 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy6112 313 KKRLMIEAEAEAEAIRLKGEAEAAAIA 339 (374)
Q Consensus 313 ~~~~~~~AeAeA~~i~~~g~AeA~ai~ 339 (374)
+......|..+++.+...+..+.+...
T Consensus 102 ~~~~~~~A~~e~~~~~~~a~~~i~~e~ 128 (174)
T PRK07352 102 RAEIEKQAIEDMARLKQTAAADLSAEQ 128 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555544444433
No 75
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=50.20 E-value=1.8e+02 Score=25.54 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6112 344 AEVEIMTKKAEAWKDYR 360 (374)
Q Consensus 344 AeAe~~~~~aea~~~~~ 360 (374)
|+.+....+..+.....
T Consensus 111 A~~~I~~e~~~a~~el~ 127 (167)
T PRK14475 111 AERKIAQAEAQAAADVK 127 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 76
>PRK13665 hypothetical protein; Provisional
Probab=50.01 E-value=58 Score=31.26 Aligned_cols=28 Identities=32% Similarity=0.328 Sum_probs=19.4
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy6112 331 GEAEAAAIAAK-ARAEVEIMTKKAEAWKD 358 (374)
Q Consensus 331 g~AeA~ai~~~-~~AeAe~~~~~aea~~~ 358 (374)
..|..+-+++| -+|||+.=.++|+||++
T Consensus 264 mkA~v~emrAkvVeAeaeVP~Ama~A~r~ 292 (316)
T PRK13665 264 MKAKVQEMRAKVVEAEAEVPLAMAEALRS 292 (316)
T ss_pred HHHHHHHHHHHhhhhhhhchHHHHHHHHc
Confidence 33444445544 46888999999999875
No 77
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=50.00 E-value=17 Score=26.35 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=25.9
Q ss_pred cCCCceEeecCCCcccCcCCcceEEecCCceEEEcc
Q psy6112 8 VTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYY 43 (374)
Q Consensus 8 ~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP~ 43 (374)
+.+|.+++ +.| ++..+.++.||-.+-|||
T Consensus 12 V~~n~~F~-----v~G--~~~~~~~~~~~~~~~i~~ 40 (57)
T PF12742_consen 12 VDKNDNFI-----VCG--PKKMNFHMWPGQKFEIPY 40 (57)
T ss_pred EcCCCceE-----EEc--cceeEEEEccCceEEEEE
Confidence 56899999 999 899999999999999986
No 78
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=49.61 E-value=1.8e+02 Score=25.49 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 337 AIAAKARAEVEIMTKKAEAWKDYREA 362 (374)
Q Consensus 337 ai~~~~~AeAe~~~~~aea~~~~~~a 362 (374)
+-+.+..|..+.-..+..|.....+.
T Consensus 98 a~r~~~~A~~~Ie~Ek~~Al~elr~e 123 (154)
T PRK06568 98 LEHKKSDAIQLIQNQKSTASKELQDE 123 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555544443
No 79
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=49.31 E-value=1.4e+02 Score=24.18 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q psy6112 315 RLMIEAEAEAEAIRLKGEAEAAAI 338 (374)
Q Consensus 315 ~~~~~AeAeA~~i~~~g~AeA~ai 338 (374)
..+..|..+|..+...+..+++..
T Consensus 43 eii~eA~~eA~~ile~Ak~eie~E 66 (103)
T PRK08404 43 EIIKKAEEEAQKLIEKKKKEGEEE 66 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555544444443333
No 80
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=49.11 E-value=1.9e+02 Score=25.69 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q psy6112 317 MIEAEAEAEAIRLKGEAEA 335 (374)
Q Consensus 317 ~~~AeAeA~~i~~~g~AeA 335 (374)
..+|..+++.+...+..+.
T Consensus 111 l~~A~~ea~~~~~~a~~~i 129 (184)
T CHL00019 111 INQAKEDLERLENYKNETI 129 (184)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333
No 81
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=48.74 E-value=46 Score=32.04 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy6112 330 KGEAEAAAIAAK-ARAEVEIMTKKAEAWKD 358 (374)
Q Consensus 330 ~g~AeA~ai~~~-~~AeAe~~~~~aea~~~ 358 (374)
...|..+.+++| -+|||+.=.++|+||+.
T Consensus 258 Em~A~vqe~rAkvVeAeaevP~A~aeAfr~ 287 (316)
T PF12127_consen 258 EMKAKVQEMRAKVVEAEAEVPLAMAEAFRS 287 (316)
T ss_pred HHHHHHHHHHhHheehhhhchHHHHHHHHc
Confidence 334444555554 46888999999999875
No 82
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=48.57 E-value=1.9e+02 Score=25.45 Aligned_cols=8 Identities=25% Similarity=0.210 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy6112 350 TKKAEAWK 357 (374)
Q Consensus 350 ~~~aea~~ 357 (374)
..+..+.+
T Consensus 123 ~e~~~a~~ 130 (173)
T PRK13460 123 LAKGKALS 130 (173)
T ss_pred HHHHHHHH
Confidence 33333333
No 83
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=46.53 E-value=1.9e+02 Score=24.96 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy6112 313 KKRLMIEAEAEAEAIRLKGEAEAAAIAA 340 (374)
Q Consensus 313 ~~~~~~~AeAeA~~i~~~g~AeA~ai~~ 340 (374)
+.....+|+.+++.+...+.++-+..+.
T Consensus 105 ~~~~~~~A~~ea~~~~~~a~~~i~~ek~ 132 (156)
T CHL00118 105 VENELKQAQKYIDSLLNEATKQLEAQKE 132 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555444444433
No 84
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=46.38 E-value=2.2e+02 Score=25.45 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q psy6112 315 RLMIEAEAEAEAIRLKGEA 333 (374)
Q Consensus 315 ~~~~~AeAeA~~i~~~g~A 333 (374)
..+.+|+++++.+.+..++
T Consensus 116 ~~~~~A~~e~~~~~aea~~ 134 (181)
T PRK13454 116 VAIAKADAEIAAKAAESEK 134 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 85
>PRK09098 type III secretion system protein HrpB; Validated
Probab=41.55 E-value=1.9e+02 Score=27.13 Aligned_cols=28 Identities=39% Similarity=0.432 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy6112 310 QANKKRLMIEAEAEAEAIRLKGEAEAAA 337 (374)
Q Consensus 310 eA~~~~~~~~AeAeA~~i~~~g~AeA~a 337 (374)
..+..+++.+|.++|+.|+.....+++.
T Consensus 49 r~~A~~Il~~A~~~A~~I~~~A~~e~e~ 76 (233)
T PRK09098 49 RARAERIVAEARAQAEAILEAARREADR 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555555555555555554443
No 86
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=41.38 E-value=1.9e+02 Score=23.41 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=16.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 297 PAEAEKYRIEKLAQANKKRLMIEAEAEAEAI 327 (374)
Q Consensus 297 ~AeAe~~~~~~~AeA~~~~~~~~AeAeA~~i 327 (374)
.||.+....-..|..+...++..|..+|+.+
T Consensus 10 ~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~ 40 (103)
T PRK08404 10 KAEKEAEERIEKAKEEAKKIIRKAKEEAKKI 40 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454555555555555555555555544444
No 87
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=40.14 E-value=1.2e+02 Score=23.62 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=34.8
Q ss_pred HHHhhhccccHHHHHH--HHHHHHHHHHHHHHHhhhccCcEEeEEEeee
Q psy6112 118 HQRAIMGSMSVEDIYK--DRKKFSKQVFQVASSDLVNMGITVVSYTLKD 164 (374)
Q Consensus 118 ~lR~vig~~tl~ei~~--~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~ 164 (374)
.+-..++++|.+++.+ ++..+.+++.+.++..|.+-- |.+|-+++
T Consensus 49 ~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~~--V~~V~ft~ 95 (99)
T PF03748_consen 49 AIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKGK--VKDVYFTD 95 (99)
T ss_pred HHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccCc--EEEEEEEE
Confidence 3378889999999985 688999999999998884433 55666655
No 88
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.30 E-value=3e+02 Score=25.13 Aligned_cols=17 Identities=29% Similarity=0.165 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhHHH
Q psy6112 318 IEAEAEAEAIRLKGEAE 334 (374)
Q Consensus 318 ~~AeAeA~~i~~~g~Ae 334 (374)
..++++++.+...++.+
T Consensus 141 ~~a~~ea~~~l~~Ae~~ 157 (204)
T PRK09174 141 AAIEASLEKKLKEAEAR 157 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 89
>PRK09098 type III secretion system protein HrpB; Validated
Probab=39.25 E-value=3.3e+02 Score=25.48 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy6112 316 LMIEAEAEAEAIRLK 330 (374)
Q Consensus 316 ~~~~AeAeA~~i~~~ 330 (374)
+..+|..+++..+..
T Consensus 66 I~~~A~~e~e~~~~~ 80 (233)
T PRK09098 66 ILEAARREADRSARR 80 (233)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 90
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=38.66 E-value=2.8e+02 Score=24.59 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=4.9
Q ss_pred HHHHHHHHhhC
Q psy6112 362 AAVIDMILESL 372 (374)
Q Consensus 362 aa~~~~~~~~l 372 (374)
..+++..|+.|
T Consensus 169 ~~lid~~i~~l 179 (184)
T PRK13455 169 NALIDEAIKEV 179 (184)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 91
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=36.64 E-value=2.5e+02 Score=23.46 Aligned_cols=40 Identities=28% Similarity=0.211 Sum_probs=17.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 322 AEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAA 363 (374)
Q Consensus 322 AeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa 363 (374)
.+.+.+...+..+++.+... |.++....+..+.+.....+
T Consensus 86 ~~~~~~~~~a~~ea~~~~~~--a~~~i~~e~~~a~~~l~~~v 125 (140)
T PRK07353 86 KLAAEALAEAQAEAQASKEK--ARREIEQQKQAALAQLEQQV 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433 34444444444444444433
No 92
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=35.46 E-value=3.2e+02 Score=24.37 Aligned_cols=57 Identities=26% Similarity=0.281 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy6112 299 EAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAA----AIAAKARAEVEIMTKKAEA 355 (374)
Q Consensus 299 eAe~~~~~~~AeA~~~~~~~~AeAeA~~i~~~g~AeA~----ai~~~~~AeAe~~~~~aea 355 (374)
+.-..++..+|+.+..+++.+|..+|+.+......+|+ .+..++..+++..+.++.+
T Consensus 5 ~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s 65 (198)
T PRK03963 5 ELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIA 65 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 93
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=35.19 E-value=3e+02 Score=23.86 Aligned_cols=13 Identities=8% Similarity=0.363 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhCC
Q psy6112 361 EAAVIDMILESLP 373 (374)
Q Consensus 361 ~aa~~~~~~~~lp 373 (374)
+..+++..|+.+|
T Consensus 150 ~~~lid~~i~~~~ 162 (164)
T PRK14471 150 QHKLVEKMLGDVK 162 (164)
T ss_pred HHHHHHHHHHhcC
Confidence 3455555666554
No 94
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=33.66 E-value=3.6e+02 Score=24.33 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6112 312 NKKRLMIEAEAEAEAIRL 329 (374)
Q Consensus 312 ~~~~~~~~AeAeA~~i~~ 329 (374)
++.+++..|+.+|+.+..
T Consensus 42 qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 42 QAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 95
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=33.50 E-value=3.1e+02 Score=23.59 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q psy6112 319 EAEAEAEAIRLKG 331 (374)
Q Consensus 319 ~AeAeA~~i~~~g 331 (374)
+|..+|+.+...+
T Consensus 94 ~A~~ea~~~~~~a 106 (159)
T PRK13461 94 EAHEEADLIIERA 106 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 96
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=32.83 E-value=2.6e+02 Score=22.37 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy6112 354 EAWKDYREAAVIDMILE 370 (374)
Q Consensus 354 ea~~~~~~aa~~~~~~~ 370 (374)
..|.++.+.+ +.+||+
T Consensus 84 ~~~~~~~~~v-v~~ll~ 99 (105)
T PF03179_consen 84 KSASKNKDKV-VDMLLS 99 (105)
T ss_dssp HHHHHHHHHH-HHHHHH
T ss_pred HHHHHhHHHH-HHHHHH
Confidence 3344444443 344443
No 97
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=32.31 E-value=3.5e+02 Score=23.75 Aligned_cols=41 Identities=7% Similarity=0.096 Sum_probs=17.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy6112 324 AEAIRLKGEAEAAAIAAKARAEV--EIMTKKAEAWKDYREAAV 364 (374)
Q Consensus 324 A~~i~~~g~AeA~ai~~~~~AeA--e~~~~~aea~~~~~~aa~ 364 (374)
.+.+...+..+++.+..++...+ |.-+.+.+.-+...+.++
T Consensus 105 ~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~~~~ 147 (167)
T PRK08475 105 TQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLNELF 147 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555554443333 233333344444444433
No 98
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=31.41 E-value=3.5e+02 Score=26.10 Aligned_cols=20 Identities=45% Similarity=0.514 Sum_probs=16.7
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q psy6112 296 RPAEAEKYRIEKLAQANKKR 315 (374)
Q Consensus 296 ~~AeAe~~~~~~~AeA~~~~ 315 (374)
..|||+.|+..++|||.+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~ 257 (280)
T cd03406 238 AKADAEYYTAQKEAEANKLK 257 (280)
T ss_pred hccCHHHHHHHHHHhhchhc
Confidence 47999999999999987554
No 99
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=30.44 E-value=3.5e+02 Score=23.25 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhCC
Q psy6112 356 WKDYREAAVIDMILESLP 373 (374)
Q Consensus 356 ~~~~~~aa~~~~~~~~lp 373 (374)
+..-.+..+++..|+.+|
T Consensus 138 l~~~~~~~li~~~i~~~~ 155 (159)
T PRK09173 138 VDAKAASELFKDALAQVK 155 (159)
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 334444456666666555
No 100
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=29.17 E-value=3.6e+02 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q psy6112 318 IEAEAEAEAIRLKGEAEAAAIAAK 341 (374)
Q Consensus 318 ~~AeAeA~~i~~~g~AeA~ai~~~ 341 (374)
.+|..+++.+...+..+++.....
T Consensus 84 ~~A~~ea~~~~~~A~~~~~~~~~~ 107 (141)
T PRK08476 84 AKAKEEAEKKIEAKKAELESKYEA 107 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454444444444444433
No 101
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=28.93 E-value=2.4e+02 Score=24.16 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=34.1
Q ss_pred HhhhccccHHHHHH--HHHHHHHHHHHHHHHhhhccCcEEeEEEeee
Q psy6112 120 RAIMGSMSVEDIYK--DRKKFSKQVFQVASSDLVNMGITVVSYTLKD 164 (374)
Q Consensus 120 R~vig~~tl~ei~~--~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~ 164 (374)
=..++++|.+|+.+ +++.+.+++.+.++..|.+ | .|.+|-+++
T Consensus 94 i~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~ 138 (142)
T PRK07718 94 IEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITS 138 (142)
T ss_pred HHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEe
Confidence 56678999999986 6999999999999988876 4 455665554
No 102
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=26.84 E-value=4.7e+02 Score=23.55 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy6112 315 RLMIEAEAEAEAIRLKGEAEAAAIAA 340 (374)
Q Consensus 315 ~~~~~AeAeA~~i~~~g~AeA~ai~~ 340 (374)
.++..|..+|+.|...++.+|+.+..
T Consensus 34 ~IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 34 EILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666665555555555
No 103
>PF05282 AAR2: AAR2 protein; InterPro: IPR007946 This family consists of several eukaryotic AAR2-like proteins. The Saccharomyces cerevisiae protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth [].; PDB: 3SBT_B 3SBS_A.
Probab=25.83 E-value=39 Score=33.62 Aligned_cols=21 Identities=29% Similarity=0.771 Sum_probs=12.3
Q ss_pred cccCcCCcceEEecCCceEEEc
Q psy6112 21 LFGPQYNAFKVLIKSGADMVLY 42 (374)
Q Consensus 21 ~~g~~~G~~~~v~~pGl~f~iP 42 (374)
-+|+.|.|++ .+.||+||++-
T Consensus 25 ~~~~~F~GIK-~IPpG~Hfi~~ 45 (362)
T PF05282_consen 25 TVGPNFKGIK-MIPPGVHFIHY 45 (362)
T ss_dssp EE-TT--EEE-EE-TT-EEEEE
T ss_pred EcCCCceEEe-cCCCCceEEEE
Confidence 4566788888 77899999963
No 104
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=25.44 E-value=4.1e+02 Score=22.36 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy6112 263 EQMKIQVIERNQEIQVQEQEIQRRKKELESSV---NRPAEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIA 339 (374)
Q Consensus 263 ~~~~~ev~e~~~~i~~~~~e~~~~e~e~eA~v---~~~AeAe~~~~~~~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~ 339 (374)
.+.+-.+.....+.+-...+......+.+..+ ...|..-.......|+..+.....+|..+++.+...+..+.+...
T Consensus 25 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~ 104 (147)
T TIGR01144 25 ETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEK 104 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhC
Q psy6112 340 AKARAEVE----------IMTKKAEAWKDYREAAVIDMILESL 372 (374)
Q Consensus 340 ~~~~AeAe----------~~~~~aea~~~~~~aa~~~~~~~~l 372 (374)
.+...+.. +-+....-+..-.+..+++.+|+.|
T Consensus 105 ~~a~~~l~~~~~~lA~~~a~kll~~~l~~~~~~~lid~~i~~~ 147 (147)
T TIGR01144 105 EQAREELRKQVADLSVLGAEKIIERNIDKQAQKDLIDKLVAEL 147 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhhC
No 105
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=25.11 E-value=4.7e+02 Score=22.91 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=3.6
Q ss_pred HHHHHHhhC
Q psy6112 364 VIDMILESL 372 (374)
Q Consensus 364 ~~~~~~~~l 372 (374)
+++.+|+.|
T Consensus 163 li~~~i~~l 171 (174)
T PRK07352 163 LIDRSIANL 171 (174)
T ss_pred HHHHHHHhh
Confidence 444444433
No 106
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=24.80 E-value=4.7e+02 Score=22.80 Aligned_cols=9 Identities=33% Similarity=0.660 Sum_probs=3.8
Q ss_pred HHHHHHhhC
Q psy6112 364 VIDMILESL 372 (374)
Q Consensus 364 ~~~~~~~~l 372 (374)
+.++++..|
T Consensus 150 lid~~~~~l 158 (161)
T COG0711 150 LIDAFIAEL 158 (161)
T ss_pred HHHHHHHhh
Confidence 444444433
No 107
>KOG3088|consensus
Probab=23.90 E-value=1.1e+02 Score=29.75 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy6112 267 IQVIERNQEIQVQEQEIQRRKKELE 291 (374)
Q Consensus 267 ~ev~e~~~~i~~~~~e~~~~e~e~e 291 (374)
.|+.+++.|..++++|++|+|.++.
T Consensus 67 ~eL~~rqeEL~Rke~ELdRREr~~a 91 (313)
T KOG3088|consen 67 AELLKKQEELRRKEQELDRRERALA 91 (313)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3455555666667777777776654
No 108
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=22.90 E-value=4.9e+02 Score=22.35 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6112 344 AEVEIMTKKAEAWKDYRE 361 (374)
Q Consensus 344 AeAe~~~~~aea~~~~~~ 361 (374)
|+.+....+..+......
T Consensus 103 a~~~I~~ek~~a~~el~~ 120 (159)
T PRK09173 103 AEQKIAQAETDAINAVRS 120 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 109
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=22.48 E-value=4.8e+02 Score=22.13 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy6112 263 EQMKIQVIERNQEIQVQEQEIQRRKKELESSV---NRPAEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIA 339 (374)
Q Consensus 263 ~~~~~ev~e~~~~i~~~~~e~~~~e~e~eA~v---~~~AeAe~~~~~~~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~ 339 (374)
.+.+-.+.....+......+......+.+..+ ...+..-+-....+|+..+...+..|..+++.+...+..+.+...
T Consensus 34 ~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~ 113 (156)
T PRK05759 34 EERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQER 113 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhC
Q psy6112 340 AKARAEVE----------IMTKKAEAWKDYREAAVIDMILESL 372 (374)
Q Consensus 340 ~~~~AeAe----------~~~~~aea~~~~~~aa~~~~~~~~l 372 (374)
.+...+-. +-+...+......+..+++..|+.|
T Consensus 114 ~~a~~~l~~~~~~lA~~~a~k~l~~~~d~~~~~~~i~~~i~~~ 156 (156)
T PRK05759 114 KRAREELRKQVADLAVAGAEKILGRELDAAAQSDLIDKLIAEL 156 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHhhC
No 110
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=22.24 E-value=4.3e+02 Score=21.48 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 335 AAAIAAKARAEVEIMTKKAEAWKDYREA 362 (374)
Q Consensus 335 A~ai~~~~~AeAe~~~~~aea~~~~~~a 362 (374)
.+.-..+..|..+....+..+.+.+...
T Consensus 91 ~~~~~~~~~a~~~i~~e~~~a~~~l~~~ 118 (132)
T PF00430_consen 91 KEAERIIEQAEAEIEQEKEKAKKELRQE 118 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555555555443
No 111
>PF12997 DUF3881: Domain of unknown function, E. rectale Gene description (DUF3881); InterPro: IPR024541 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=20.78 E-value=57 Score=31.50 Aligned_cols=43 Identities=21% Similarity=0.462 Sum_probs=35.8
Q ss_pred hhhccccHHHHHH----HHHHHHHHHHHHHHHhhhccCcEEeEEEee
Q psy6112 121 AIMGSMSVEDIYK----DRKKFSKQVFQVASSDLVNMGITVVSYTLK 163 (374)
Q Consensus 121 ~vig~~tl~ei~~----~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~ 163 (374)
..|-++|++|+-. +|.-..+.|...++..+-++|++.+-+.|.
T Consensus 180 dAiEsLTleDiD~Ys~vsrRi~~EDvySIVdt~FMP~GiEcD~YSIl 226 (283)
T PF12997_consen 180 DAIESLTLEDIDTYSMVSRRIMKEDVYSIVDTYFMPYGIECDQYSIL 226 (283)
T ss_pred HHHHhccHHHHHHHHHHHHhhhcccceEEEeeccccccccccceeeh
Confidence 5788899997754 566778889999999999999999888664
No 112
>KOG0994|consensus
Probab=20.77 E-value=1.4e+03 Score=26.95 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=10.9
Q ss_pred hhhhccCC---CHHHHHHHHHHHH
Q psy6112 95 HSTKQNHI---SEDEIQNIALVTL 115 (374)
Q Consensus 95 a~~~~l~~---~~~~i~~~v~~~l 115 (374)
...+||.. +++.|+++...+|
T Consensus 1479 ~v~~Flt~~~adp~si~~vA~~vL 1502 (1758)
T KOG0994|consen 1479 QVRDFLTQPDADPDSIEEVAEEVL 1502 (1758)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34445443 4555666655555
No 113
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.34 E-value=2.7e+02 Score=25.21 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=33.5
Q ss_pred HhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeee
Q psy6112 120 RAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKD 164 (374)
Q Consensus 120 R~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~ 164 (374)
...++++|.+|+. ....+..++++.++..|.+-- |.+|-+++
T Consensus 134 i~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~Gk--V~~VYFTe 175 (181)
T PRK06654 134 REYFSQKTGQELK-NESQIKAEIKARINSILRNGE--IKDIAFTQ 175 (181)
T ss_pred HHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCCc--eEEEEEEE
Confidence 7888999999998 889999999999998887532 44555544
No 114
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=20.13 E-value=4e+02 Score=22.34 Aligned_cols=62 Identities=19% Similarity=0.110 Sum_probs=33.7
Q ss_pred EEEEEEEEEeecCchhh-----HHHhhhhccCCCHHHHHHHHHHHHh-----------HHHHhhhccccHHHHHHHHHH
Q psy6112 75 LTGEILTIVNVMDEEGH-----EQKHSTKQNHISEDEIQNIALVTLE-----------GHQRAIMGSMSVEDIYKDRKK 137 (374)
Q Consensus 75 v~vd~~~~~rI~~~~~~-----~~~a~~~~l~~~~~~i~~~v~~~l~-----------g~lR~vig~~tl~ei~~~R~~ 137 (374)
|.+|-.-.+||-||..+ +...|..|+.+ ...+..++..++. ..||.+-..+.|..+..+|..
T Consensus 3 l~fDe~~kiRVldp~~~~~t~~Lk~ec~~F~~k-i~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~ 80 (120)
T PF14931_consen 3 LYFDEENKIRVLDPEKADQTQELKEECKEFVEK-ISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREA 80 (120)
T ss_pred eeecCCCCeeecChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Confidence 56666667788775432 33455556543 3444444444432 356666666666666555554
Done!