Query psy6112
Match_columns 374
No_of_seqs 231 out of 1763
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:55:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1win_A Flotillin 2; BAND 7 dom 99.9 1.4E-26 4.8E-31 199.7 11.0 139 43-185 3-142 (143)
2 3bk6_A PH stomatin; archaea, t 99.9 4.2E-22 1.4E-26 179.0 17.1 151 43-206 2-153 (188)
3 4fvg_A Stomatin; mixed alpha-b 99.9 1.8E-21 6.3E-26 165.6 12.6 130 39-181 3-133 (133)
4 2rpb_A Hypothetical membrane p 99.6 6.3E-16 2.1E-20 127.2 8.9 109 48-169 3-112 (113)
5 2zuo_A MVP, major vault protei 98.6 0.00034 1.2E-08 73.7 36.3 156 7-180 461-659 (861)
6 2zuo_A MVP, major vault protei 90.0 22 0.00077 37.8 20.1 27 150-176 633-659 (861)
7 3v6i_A V-type ATP synthase sub 76.2 9.9 0.00034 32.8 8.3 31 298-328 11-41 (187)
8 2kk7_A V-type ATP synthase sub 75.4 6.9 0.00024 26.8 5.6 33 316-348 15-47 (52)
9 3v6i_A V-type ATP synthase sub 70.8 24 0.00083 30.2 9.5 41 306-346 8-48 (187)
10 3v6i_B V-type ATP synthase, su 69.2 39 0.0013 26.4 12.9 13 361-373 93-105 (105)
11 2kk7_A V-type ATP synthase sub 61.8 17 0.00058 24.8 5.2 31 308-338 18-48 (52)
12 3bk6_A PH stomatin; archaea, t 54.8 19 0.00066 30.8 5.7 14 360-373 159-172 (188)
13 2k6i_A Uncharacterized protein 33.5 52 0.0018 22.8 3.9 7 322-328 37-43 (56)
14 2k6i_A Uncharacterized protein 30.7 53 0.0018 22.8 3.6 27 320-346 24-50 (56)
15 3sbt_B A1 cistron-splicing fac 25.9 29 0.00098 33.4 2.1 19 23-42 27-46 (363)
No 1
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.94 E-value=1.4e-26 Score=199.69 Aligned_cols=139 Identities=32% Similarity=0.457 Sum_probs=125.1
Q ss_pred ccceeEEeccCccccccee-eecCCCCccccceEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHh
Q psy6112 43 YFQVAAEVAAPLSQTKRVT-MVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRA 121 (374)
Q Consensus 43 ~i~~v~~v~~r~~~~~~~~-~~~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~ 121 (374)
||+++.++|+|++++|.++ .+.|.+++ +|.||++++|||.++|..+++++++|+|.+...+.+++.+++.++||+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v----~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~ 78 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGV----ALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRS 78 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSC----EEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCC----EEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 6799999999999888765 33333332 688899999999977777788899999988899999999999999999
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhhhhhhhhH
Q psy6112 122 IMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKR 185 (374)
Q Consensus 122 vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~~Ae~~r 185 (374)
++|+|||++++++|+.|+..|++.++.++.+|||+|.+|+|++|+||++|+++|++++.|+..+
T Consensus 79 viG~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae~~~ 142 (143)
T 1win_A 79 ILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS 142 (143)
T ss_dssp HHHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCCCC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999998753
No 2
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.88 E-value=4.2e-22 Score=179.04 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=126.8
Q ss_pred ccceeEEeccCccccccee-eecCCCCccccceEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHh
Q psy6112 43 YFQVAAEVAAPLSQTKRVT-MVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRA 121 (374)
Q Consensus 43 ~i~~v~~v~~r~~~~~~~~-~~~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~ 121 (374)
||+++.++|+|.++++..+ ...|.+++ +|.||++++|+|.||..++ +... + ....+..++.+.||+
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~----~V~v~~~v~yrI~dp~~~~-~~v~-----~---~~~~i~~~~~~~lR~ 68 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNV----PVRVNAVVYFRVVDPVKAV-TQVK-----N---YIMATSQISQTTLRS 68 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSC----EEEEEEEEEEEESCHHHHH-HSSS-----C---HHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCC----EEEEEEEEEEEECCHHHHH-HHhc-----C---HHHHHHHHHHHHHHH
Confidence 6789999999998887654 33343432 6899999999999866553 2222 2 233455666777899
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy6112 122 IMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIK 201 (374)
Q Consensus 122 vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~~Ae~~r~A~i~~Aea~rea~i~ 201 (374)
++|+||+++++++|+.|+..|.+.++..+.+|||.|++|+|++|++|+++.++|+.++.|+++++|.+.+|+|++++...
T Consensus 69 vig~~~l~ell~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~ 148 (188)
T 3bk6_A 69 VIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEK 148 (188)
T ss_dssp HHHTSCHHHHHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHH
Q psy6112 202 EAMAE 206 (374)
Q Consensus 202 ~Aea~ 206 (374)
.+++.
T Consensus 149 ~a~a~ 153 (188)
T 3bk6_A 149 LREAA 153 (188)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77663
No 3
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.86 E-value=1.8e-21 Score=165.56 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=87.4
Q ss_pred EEEcccceeEEeccCccccccee-eecCCCCccccceEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhH
Q psy6112 39 MVLYYFQVAAEVAAPLSQTKRVT-MVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEG 117 (374)
Q Consensus 39 f~iP~i~~v~~v~~r~~~~~~~~-~~~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g 117 (374)
|+.|||+++.++|+|++++|..+ ...|.++ ..|.||++++|+|.|+.++++ . ++. ....+...+.+
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~----~~v~Vd~~v~yrI~Dp~~~~~-~----v~~----~~~~l~~~~~~ 69 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDS----VTISVDGVVYYRVQNATLAVA-N----ITN----ADSATRLLAQT 69 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTC----CEEEEEEEEEEEESCHHHHHH-S----SSC----HHHHHHHHHHH
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCC----CEEEEEEEEEEEEeehHHhHh-h----hhh----HHHHHHHHHHH
Confidence 78899999999999999888755 2333333 268999999999999776543 1 122 33344445556
Q ss_pred HHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhhhhh
Q psy6112 118 HQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTA 181 (374)
Q Consensus 118 ~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~~A 181 (374)
.||+++|++|+++++++|+.++..+++.++..+++||++|.+|+|++|++|+++.++|+++|.|
T Consensus 70 ~lR~vig~~~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 70 TLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp HHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred HHHHHhccccHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 6699999999999999999999999999999999999999999999999999999999888765
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.63 E-value=6.3e-16 Score=127.18 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=87.9
Q ss_pred EEeccCccccccee-eecCCCCccccceEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccc
Q psy6112 48 AEVAAPLSQTKRVT-MVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSM 126 (374)
Q Consensus 48 ~~v~~r~~~~~~~~-~~~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~ 126 (374)
.++|+|.++++..+ ...+.++ .+|.|+++++|||.|+..++. ++ ......+...+.++||+++|++
T Consensus 3 ~~vd~r~~~~~~~~~~v~T~D~----~~v~v~~~v~~rI~dp~~~~~----~v-----~~~~~~l~~~~~~~lR~vig~~ 69 (113)
T 2rpb_A 3 DHVDLREHVIDVPPQEVICKDN----VVVTVDAVVYYQVIDPVKAVY----NV-----SDFLMAIVKLAQTNLRAIIGEM 69 (113)
T ss_dssp SCCCCCCEEEECCCEEEECTTS----CEEEECEEEEEEESCTTTCTT----TT-----THHHHHHHHHHHHHHHHHHTSC
T ss_pred eEEeeeEEEEecCcceeEeCCC----CEEEEEEEEEEEECCHHHHHH----hc-----CCHHHHHHHHHHHHHHHHHhcC
Confidence 35788887776543 2233333 268889999999998765532 11 2355668888888999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCch
Q psy6112 127 SVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDE 169 (374)
Q Consensus 127 tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~ 169 (374)
|+++++++|+.|+..|.+.+++.+.+|||+|.+|+|++|++|+
T Consensus 70 ~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~ 112 (113)
T 2rpb_A 70 ELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPPK 112 (113)
T ss_dssp CTTHHHHCHHHHHHHHHHHHHHHHGGGTEECCCEEECCCBCCC
T ss_pred cHHHHHhCHHHHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCC
Confidence 9999999999999999999999999999999999999999995
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.61 E-value=0.00034 Score=73.75 Aligned_cols=156 Identities=11% Similarity=0.092 Sum_probs=88.3
Q ss_pred ecCCCceEeecCCCcccCcCCcceEEecCCceEEEcccceeEE--ecc----Cc---cc----------ccceeeecCCC
Q psy6112 7 AVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAE--VAA----PL---SQ----------TKRVTMVSSGS 67 (374)
Q Consensus 7 k~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP~i~~v~~--v~~----r~---~~----------~~~~~~~~s~~ 67 (374)
+|+.|.+.- +++-+-|+.|++++|-+.|.=|- ..... +|. +. .+ +|...+.|+|.
T Consensus 461 rvphnaaVq-----vyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~Dh 534 (861)
T 2zuo_A 461 RVPHNAAVQ-----VYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADH 534 (861)
T ss_dssp ECCTTEEEE-----EECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTC
T ss_pred EcCCCeEEE-----EEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCc
Confidence 478888887 88866789999999998555443 22222 220 00 00 12222334443
Q ss_pred CccccceEEEEEEEEEee--cCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHH
Q psy6112 68 GELGAAKLTGEILTIVNV--MDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQV 145 (374)
Q Consensus 68 ~~it~~~v~vd~~~~~rI--~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~ 145 (374)
. .+.+.....|.. .|+.+ -..+..-|.. ++ +---+...+.+.+|..+++.|+++.+.+-..+ |+..
T Consensus 535 A-----rL~L~LsYnW~F~~~d~~~-~~~~~k~Fsv--~D-FvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~i---ir~a 602 (861)
T 2zuo_A 535 A-----RLQLQLAYNWHFELKNRND-PAEAAKLFSV--PD-FVGDACKAIASRVRGAVASVTFDDFHKNSARI---IRMA 602 (861)
T ss_dssp C-----EEEEEEEEEEEECCTTTTC-HHHHHGGGSS--SS-HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH---HHHH
T ss_pred e-----EEEEEEEEEEEEeccCCCC-hhhhhhhccC--Cc-hHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHH---HHHh
Confidence 3 344444445544 33321 1222333322 22 22333455567779999999999998764433 2222
Q ss_pred HH---------------------HhhhccCcEEeEEEeeeccCch-hHHHHHhhhhh
Q psy6112 146 AS---------------------SDLVNMGITVVSYTLKDIRDDE-GYLKSLGMART 180 (374)
Q Consensus 146 v~---------------------~~l~~~Gl~i~~v~I~~I~~~~-~~~~a~~~~~~ 180 (374)
+- -.+...|+-|.+|.|+++.+-+ ...++|.+...
T Consensus 603 VFg~~~~~~~~~~~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~LqkSVq 659 (861)
T 2zuo_A 603 VFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQ 659 (861)
T ss_dssp SSCCC-------------CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred hcCCCcccccccccccccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHHHHHH
Confidence 21 1257889999999999999854 56666644433
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=89.97 E-value=22 Score=37.78 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=14.7
Q ss_pred hhccCcEEeEEEeeeccCchhHHHHHh
Q psy6112 150 LVNMGITVVSYTLKDIRDDEGYLKSLG 176 (374)
Q Consensus 150 l~~~Gl~i~~v~I~~I~~~~~~~~a~~ 176 (374)
|-=..+.|.+++..|...-+...+|+.
T Consensus 633 lvitsVDvqsvEpvDqrtrd~LqkSVq 659 (861)
T 2zuo_A 633 LVVSSVDVQSVEPVDQRTRDALQRSVQ 659 (861)
T ss_dssp EEEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEeeeeecccCHHHHHHHHHHHH
Confidence 334445666666666655555555553
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=76.21 E-value=9.9 Score=32.77 Aligned_cols=31 Identities=32% Similarity=0.291 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6112 298 AEAEKYRIEKLAQANKKRLMIEAEAEAEAIR 328 (374)
Q Consensus 298 AeAe~~~~~~~AeA~~~~~~~~AeAeA~~i~ 328 (374)
|+++..++..+|+.+...++.+|+++|+.+.
T Consensus 11 A~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~ 41 (187)
T 3v6i_A 11 VEAEIQALLQEAEAKAEAVKREAEEKAKALL 41 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444333
No 8
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=75.37 E-value=6.9 Score=26.80 Aligned_cols=33 Identities=42% Similarity=0.463 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy6112 316 LMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEI 348 (374)
Q Consensus 316 ~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeAe~ 348 (374)
+..+|+.+|+.|...++++|+.|...+..+|+.
T Consensus 15 I~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 15 ILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677777777777776666666554
No 9
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=70.81 E-value=24 Score=30.22 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy6112 306 EKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEV 346 (374)
Q Consensus 306 ~~~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai~~~~~AeA 346 (374)
+.+|+++..+++.+|+++|+.|...++++|+.+......++
T Consensus 8 ~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~ 48 (187)
T 3v6i_A 8 SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERAL 48 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777777788887777777777765544443
No 10
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=69.17 E-value=39 Score=26.38 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhCC
Q psy6112 361 EAAVIDMILESLP 373 (374)
Q Consensus 361 ~aa~~~~~~~~lp 373 (374)
+-|+...|=++||
T Consensus 93 ~~Av~~vLkeVLP 105 (105)
T 3v6i_B 93 DEAVALVLKEVLP 105 (105)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhhCC
Confidence 3455556667777
No 11
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=61.78 E-value=17 Score=24.77 Aligned_cols=31 Identities=35% Similarity=0.342 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy6112 308 LAQANKKRLMIEAEAEAEAIRLKGEAEAAAI 338 (374)
Q Consensus 308 ~AeA~~~~~~~~AeAeA~~i~~~g~AeA~ai 338 (374)
+|+.+..+++.+|+++|+.|...+..+|+.+
T Consensus 18 eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~ 48 (52)
T 2kk7_A 18 DAKAEANKIISEAEAEKAKILEKAKEEAEKR 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666777777777766666543
No 12
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=54.84 E-value=19 Score=30.76 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhCC
Q psy6112 360 REAAVIDMILESLP 373 (374)
Q Consensus 360 ~~aa~~~~~~~~lp 373 (374)
++.++...+|+.|.
T Consensus 159 ~~~~l~lr~le~~~ 172 (188)
T 3bk6_A 159 HPMALQLRTLQTIS 172 (188)
T ss_dssp CTTHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHH
Confidence 34556666766654
No 13
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=33.52 E-value=52 Score=22.84 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy6112 322 AEAEAIR 328 (374)
Q Consensus 322 AeA~~i~ 328 (374)
.+|..|.
T Consensus 37 ~ea~~ii 43 (56)
T 2k6i_A 37 NRAEQIK 43 (56)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 14
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=30.70 E-value=53 Score=22.81 Aligned_cols=27 Identities=30% Similarity=0.199 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy6112 320 AEAEAEAIRLKGEAEAAAIAAKARAEV 346 (374)
Q Consensus 320 AeAeA~~i~~~g~AeA~ai~~~~~AeA 346 (374)
||.+|..+-..++-++..+...+..+|
T Consensus 24 AE~~A~~iVeeA~~ea~~ii~eAreeA 50 (56)
T 2k6i_A 24 AEEQAVKEIEEAKNRAEQIKAEAIEEA 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333
No 15
>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A
Probab=25.92 E-value=29 Score=33.45 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=16.1
Q ss_pred cCcCCcceEEecCC-ceEEEc
Q psy6112 23 GPQYNAFKVLIKSG-ADMVLY 42 (374)
Q Consensus 23 g~~~G~~~~v~~pG-l~f~iP 42 (374)
|++|.|++ -+.|| +||++-
T Consensus 27 g~~F~GIK-~IPpG~~Hfih~ 46 (363)
T 3sbt_B 27 NQPFHGIK-DIPIGHVHVIHF 46 (363)
T ss_dssp TCCCCEEE-EECTTSCEEEEE
T ss_pred CCCCccee-cCCCCCCEEEEE
Confidence 77899988 77799 999973
Done!