RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6112
(374 letters)
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, cell adhesion; NMR
{Mus musculus} SCOP: d.43.2.1
Length = 143
Score = 84.9 bits (210), Expect = 4e-20
Identities = 40/102 (39%), Positives = 65/102 (63%)
Query: 83 VNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQV 142
V +M E+ + + +I+N+ L TLEGH R+I+G+++VE IY+DR +F+K V
Sbjct: 40 VKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLV 99
Query: 143 FQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVK 184
+VA+ D+ MGI ++S+T+KD+ D YL SLG +T+
Sbjct: 100 REVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPS 141
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 57.1 bits (137), Expect = 5e-09
Identities = 36/262 (13%), Positives = 83/262 (31%), Gaps = 32/262 (12%)
Query: 120 RAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMAR 179
R + S++ +D +K+ + + V + + + +G L +
Sbjct: 580 RGAVASVTFDDFHKNSARIIRMA--------------VFGFEMSEDTGPDGTLLPKARDQ 625
Query: 180 TAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVE 239
+ + + Q + + + + + + A+ E
Sbjct: 626 AVFPQNGLVVSSVDVQSVEPVDQRTRDALQ---------RSVQLAIEITTNSQEAAAKHE 676
Query: 240 TKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAE 299
+R E E L+ K + + E+ + +++E E + + + E
Sbjct: 677 AQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIE 736
Query: 300 AEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAI-------AAKARAEVEIMTKK 352
E A+ + L IE EAE E ++ E E +KA+ + KK
Sbjct: 737 GE--GSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKK 794
Query: 353 AEAWKDYREAAVIDMILESLPK 374
+ + I + + P+
Sbjct: 795 FKEMTEALGPGTIRDLAVAGPE 816
Score = 47.1 bits (111), Expect = 7e-06
Identities = 41/240 (17%), Positives = 82/240 (34%), Gaps = 22/240 (9%)
Query: 137 KFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQK 196
F V + ++D + + + ++++ ++ + + DA A +
Sbjct: 521 DFFTDVITIETADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVR 580
Query: 197 DARIKEAMAEEEKMAARFV----------NDTEIAKAQRDFEIKKATYDAE------VET 240
A + K +AR + DT +A + V+
Sbjct: 581 GAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDV 640
Query: 241 KRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEA 300
+ E A + ++ E E + + Q E + R + + +EA
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITT-NSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699
Query: 301 EKYRIEKLAQ-----ANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEA 355
EK R E L A + +AEAE+ A + E E + + AK +A+ + +AE
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAEL 759
Score = 39.8 bits (92), Expect = 0.001
Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 3/129 (2%)
Query: 177 MARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDA 236
+ A G A+A+ ++R + A E E + + + + E+++
Sbjct: 707 LELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVR 766
Query: 237 EVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNR 296
E+E A A+L E+ A+ ++ ++ K +++ E++ + +
Sbjct: 767 EMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPG---TIRDLAVAGPEMQVKLLQ 823
Query: 297 PAEAEKYRI 305
+ I
Sbjct: 824 SLGLKSTLI 832
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 6e-08
Identities = 41/294 (13%), Positives = 73/294 (24%), Gaps = 140/294 (47%)
Query: 6 DAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVA---AEVAAPLSQTKRVTM 62
+ + + + E+ L Q Q A E A
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQ-FT----------------QPALTLMEKA----------- 1742
Query: 63 VSSGSGELGAAKLTGEILTIVNVMDEEGHEQK------HS----TKQNHISEDEIQNIAL 112
+ +G HS AL
Sbjct: 1743 -------------------AFEDLKSKGLIPADATFAGHSLGEYA-------------AL 1770
Query: 113 VTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYL 172
++ MS+E + VV Y R
Sbjct: 1771 A-------SLADVMSIES-----------------------LVEVVFY-----R------ 1789
Query: 173 KSLGMARTAEVKRDARIGEAE----AQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDF- 227
GM V RD +G + A R+ + ++E A ++V + + K
Sbjct: 1790 ---GMTMQVAVPRDE-LGRSNYGMIAINPGRVAASFSQE---ALQYVVE-RVGKRTGWLV 1841
Query: 228 EIKKATYDAEVE------TKRAEAELAFELQAAKTKQRIK----EEQMKIQVIE 271
EI Y+ E + RA + L K + +I ++ + ++ +E
Sbjct: 1842 EI--VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ-KIDIIELQKSLSLEEVE 1892
Score = 35.0 bits (80), Expect = 0.042
Identities = 60/409 (14%), Positives = 111/409 (27%), Gaps = 143/409 (34%)
Query: 2 GSFMDAVTPNLC----WSQEEEPLFGPQYNAFKVLIKSGADMV--LYYFQVAAEVAAP-- 53
G + L + + E +F N + L Y ++ ++ P
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL--ENPSNTPDKDYL-LSIPISCPLI 241
Query: 54 -LSQTKR--VTMVSSGS--GELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQ 108
+ Q VT G GEL + L G T GH Q
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGEL-RSYLKG--AT--------GHSQ--------------- 275
Query: 109 NIALVTLEGHQRAIMGSMSVEDIYKDRKK-----F-----SKQVFQVASSDLVNMGITVV 158
LVT AI + S E + +K F + + S +++
Sbjct: 276 --GLVT----AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP-----SIL 324
Query: 159 SYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEA---MAEEEKMAARFV 215
+L++ +EG + S M + + Q + + + +++ V
Sbjct: 325 EDSLEN---NEG-VPSP-MLS---IS-----NLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 216 NDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQE 275
N ++ V + ++ L K K +Q +I
Sbjct: 372 N------GAKNL----------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-------- 407
Query: 276 IQVQEQEIQRRKKELESSVNR--PAEA---EKYRIEKLAQANKKRLMIEAEAEAEAIRLK 330
RK + NR P + L A+ I + +
Sbjct: 408 ------PFSERKLKF---SNRFLPVASPFHSHL----LVPASDL---INKDLVKNNVSFN 451
Query: 331 GEAEAAAIAAKARAEVEIMTKKAEAWKDYRE------AAVIDMILESLP 373
+ +++I D R ++D I+ LP
Sbjct: 452 AK------------DIQIPVYDTFDGSDLRVLSGSISERIVDCII-RLP 487
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 8e-07
Identities = 39/338 (11%), Positives = 111/338 (32%), Gaps = 73/338 (21%)
Query: 86 MDEEGHEQKHSTKQ--NHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYK--DRKKFSKQ 141
MD E E ++ K + + + N ++ ++I+ ++ I D + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 142 VFQVASSDLVNMGITVVSYTLKDI-RDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARI 200
+F L++ +V ++++ R + +L S I + Q
Sbjct: 67 LFWT----LLSKQEEMVQKFVEEVLRINYKFLMS-------------PIKTEQRQPSMMT 109
Query: 201 KEAMAEEEKMAARFVNDTE------IAKAQRDFEIKKATYDAEVET-----------KRA 243
+ + + +++ ND + +++ Q ++++A + K
Sbjct: 110 RMYIEQRDRLY----NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 244 EAELAFE-LQAAKTKQR---------IKEEQMKIQVIERNQEIQVQEQEIQRRKKELESS 293
+A + + K + + +K V+E Q++ Q + + S+
Sbjct: 166 ---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 294 VNRPAEAEKYRIEKL--AQANKKRLMI------EAEAEAEAIRLK------GEAEAAAIA 339
+ + + + +L ++ + L++ A + K + ++
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 340 AKARAEVEIMTKKAEAWKDYRE---AAVIDMILESLPK 374
A + + D + +D + LP+
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Score = 48.7 bits (115), Expect = 3e-06
Identities = 59/429 (13%), Positives = 109/429 (25%), Gaps = 145/429 (33%)
Query: 4 FMDAVTPNL-CWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVTM 62
F DA N C ++ P +L K D ++ +S T R+
Sbjct: 25 FEDAFVDNFDCKDVQDMPK--------SILSKEEIDHII-------MSKDAVSGTLRLFW 69
Query: 63 VSSGSGELGAAKLTGEIL--------------TIVNVMDEEGHEQKHSTKQN-------- 100
E K E+L M + ++ N
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 101 HIS-EDEIQNI--AL--------VTLEGHQRAIMG----SMSVEDIYKDRK---KFSKQV 142
++S + AL V ++G + + D+ K K ++
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDG-----VLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 143 FQVASSDLVNMGITVVSYTLKDIRDDEGYLKSL-------GMARTAEVKRDARIGEAEAQ 195
F + LK+ E L+ L T+ + I
Sbjct: 185 FWL---------------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 196 KDARIKEAMAEEEKMAA----RFVNDTEIAKAQRDFEIK-K---ATYDAEVETKRAEAEL 247
A ++ + + V + + A F + K T +V
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTTRFKQV--------- 277
Query: 248 AFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEK 307
L AA T + + ++ + + + R ++L P E
Sbjct: 278 TDFLSAATTTHISLDHHSM--TLTPDEVKSLLLKYLDCRPQDL------PREVLT--TNP 327
Query: 308 LAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDY---REAAV 364
+ +I AE+IR + WK + +
Sbjct: 328 RRLS-----II-----AESIR-------------------DGLATWDNWKHVNCDKLTTI 358
Query: 365 IDMILESLP 373
I+ L L
Sbjct: 359 IESSLNVLE 367
Score = 42.9 bits (100), Expect = 1e-04
Identities = 39/336 (11%), Positives = 99/336 (29%), Gaps = 94/336 (27%)
Query: 54 LSQTKRVTMVSSGSGELGAAK--LTGEIL---TIVNVMDEE------GHEQKHST----K 98
L K V + G LG+ K + ++ + MD + + T
Sbjct: 147 LRPAKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 99 QN---HISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGI 155
Q I + + + S++ + R+ + ++ + LV
Sbjct: 203 QKLLYQIDPNWTSR-----SDHSSNIKLRIHSIQA--ELRRLLKSKPYE--NCLLV---- 249
Query: 156 TVVSYTLKDIRDDEGYLKSLGM-ARTAEVKRDARIGE---AEAQKDARIKE---AMAEEE 208
L ++++ + + + + R ++ + A + + +E
Sbjct: 250 ------LLNVQNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 209 KMA--ARFVNDTE-----------------IAKAQRDFEIKKATYD--AEVETKRAEA-- 245
+ ++++ IA++ RD AT+D V +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG---LATWDNWKHVNCDKLTTII 359
Query: 246 ELAFE-LQAAKTKQR-----IKEEQMKI--QVIER------NQEIQVQEQEIQRRKKELE 291
E + L+ A+ ++ + I ++ ++ V ++ +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----- 414
Query: 292 SSVNRPAEAEKYRIEKLAQANKKRLMIEAEAEAEAI 327
S V + + I + K +L E +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 45.5 bits (108), Expect = 2e-05
Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 1/184 (0%)
Query: 188 RIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDF-EIKKATYDAEVETKRAEAE 246
+ R K M E + A+ + KA + +R A+
Sbjct: 844 ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK 903
Query: 247 LAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIE 306
+ + + + +++ I + + ++Q + E + K L +N E
Sbjct: 904 RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963
Query: 307 KLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVID 366
KL ++ M E EA+ R+ E A K + + K E W D +
Sbjct: 964 KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023
Query: 367 MILE 370
++ E
Sbjct: 1024 LVSE 1027
Score = 38.2 bits (89), Expect = 0.004
Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 7/142 (4%)
Query: 191 EAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFE 250
+ + E EK+ + + ++ + + E+ R E
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH---- 1001
Query: 251 LQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEKLAQ 310
Q K+ I+E K + E Q + +++ K E E R + K E + +
Sbjct: 1002 -QTQTEKKTIEEWADKYKH-ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK 1059
Query: 311 ANKKRLMIEAEAEAEAIRLKGE 332
+ + E + RL+ +
Sbjct: 1060 KLVEETK-QLELDLNDERLRYQ 1080
Score = 37.8 bits (88), Expect = 0.005
Identities = 29/213 (13%), Positives = 61/213 (28%), Gaps = 29/213 (13%)
Query: 163 KDIRDDEGYLKSLGMARTAEVKRDARIGEAEA---QKDARIKEAMAEEEKMAARFVNDTE 219
+ +RD L++L K + E ++ QK R A +
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLK------A 889
Query: 220 IAKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTK---------QRI--KEEQMKIQ 268
I Q + A E++ + EA + ++I + ++ K
Sbjct: 890 IVYLQCCYRRMMA--KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947
Query: 269 VIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEKLAQANKKRLMIEAEAEAEAIR 328
+ + N E ++ + ++E E N+ + E A+
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVE-------RLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000
Query: 329 LKGEAEAAAIAAKARAEVEIMTKKAEAWKDYRE 361
+ + E I A + K+
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNT 1033
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 43.3 bits (102), Expect = 1e-04
Identities = 27/187 (14%), Positives = 73/187 (39%), Gaps = 1/187 (0%)
Query: 182 EVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 241
E++ + ++ + + + E E+ + + + + + E + E+ +
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917
Query: 242 RAEAELAFELQAAKTKQRIK-EEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEA 300
A + E + + RI+ EE+ Q+ +++Q Q +++ + +E E++ +
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977
Query: 301 EKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYR 360
+ K+ + L++E + K E + AE E K K+
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Query: 361 EAAVIDM 367
E+ + ++
Sbjct: 1038 ESMISEL 1044
Score = 39.0 bits (91), Expect = 0.003
Identities = 30/160 (18%), Positives = 60/160 (37%)
Query: 188 RIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAEL 247
++ E EA + E + + K+ + + ++ + V
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 248 AFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEK 307
E TK + K E M ++ R ++ + QE+++ K++LE + E +
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
Query: 308 LAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVE 347
+A+ + E E +A RL+ E A K E+E
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122
Score = 35.6 bits (82), Expect = 0.028
Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 178 ARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQ-------RDFEIK 230
+ +E++ + E Q+ +IK + E + + + A+ ++ E++
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098
Query: 231 KATYDAEVETKRAEAELA----FELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRR 286
A E ET + L E + ++ ++ E+ E+ + + +E++
Sbjct: 1099 AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK--QKRDLSEELEAL 1156
Query: 287 KKELESSVNRPAEAEKYRIEKLAQANKK 314
K ELE +++ A ++ R + K
Sbjct: 1157 KTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 34.8 bits (80), Expect = 0.045
Identities = 29/157 (18%), Positives = 64/157 (40%), Gaps = 12/157 (7%)
Query: 181 AEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVET 240
+ K ++ I E E + + +++ E EK+ + ++ Q E++ + + +
Sbjct: 1033 LKNKHESMISELE-VRLKKEEKSRQELEKIKRKLEGESSDLHEQIA-ELQAQIAELKAQL 1090
Query: 241 KRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEA 300
+ E EL R+++E + + +I+ E I +++LES +A
Sbjct: 1091 AKKEEELQ------AALARLEDETSQKNNALK--KIRELESHISDLQEDLESEKAARNKA 1142
Query: 301 EKYR--IEKLAQANKKRLMIEAEAEAEAIRLKGEAEA 335
EK + + + +A K L + A L+G
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
Score = 34.4 bits (79), Expect = 0.059
Identities = 29/214 (13%), Positives = 77/214 (35%), Gaps = 15/214 (7%)
Query: 163 KDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARF-------- 214
+ + ++E + L + + + ++ + + + + E + + R
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 215 -----VNDTEIAKAQRDFEIKKATYDAEVETK-RAEAELAF-ELQAAKTKQRIKEEQMKI 267
+ K + + I + + E K R E E +L+ + + +++
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081
Query: 268 QVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEKLAQANKKRLMIEAEAEAEAI 327
Q+ E ++ +E+E+Q LE ++ A K E + + + +E+E A
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141
Query: 328 RLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYRE 361
K + + + + E+E ++ R
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 41.0 bits (97), Expect = 2e-04
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 107 IQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIR 166
I+ TL R+++G ++++ +R K + Q+ ++ GI V + +KD+
Sbjct: 58 TSQISQTTL----RSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVE 113
Query: 167 DDEGYLKSLGMARTAEVKRDAR--IGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQ 224
G K+ MAR AE +R+ R I AEA++ A AE+ + AA +++ +A
Sbjct: 114 LPAGMQKA--MARQAEAERERRARITLAEAERQA------AEKLREAAEIISEHPMALQL 165
Query: 225 R 225
R
Sbjct: 166 R 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.003
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 10/34 (29%)
Query: 279 QEQEIQRRKKELESSV------NRPAEAEKYRIE 306
++Q + K+L++S+ + PA A K +E
Sbjct: 18 EKQAL----KKLQASLKLYADDSAPALAIKATME 47
Score = 35.3 bits (80), Expect = 0.013
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 10/40 (25%)
Query: 306 EKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAE 345
EK QA KK ++A +++L + A A+A KA E
Sbjct: 18 EK--QALKK---LQA-----SLKLYADDSAPALAIKATME 47
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 34.6 bits (80), Expect = 0.049
Identities = 13/142 (9%), Positives = 34/142 (23%), Gaps = 4/142 (2%)
Query: 221 AKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQE 280
+ + ++ T L+ A+ + + + +Q
Sbjct: 825 LQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYN 884
Query: 281 QEIQRRKKELESSVNRPAEAEKYRIEKLAQANKKRLMIEA----EAEAEAIRLKGEAEAA 336
+ +++ + + E QA K L E ++ A
Sbjct: 885 RILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ 944
Query: 337 AIAAKARAEVEIMTKKAEAWKD 358
E+ +K +
Sbjct: 945 LTELNYNGVPELTERKDTFFAQ 966
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 34.5 bits (78), Expect = 0.049
Identities = 18/140 (12%), Positives = 53/140 (37%)
Query: 182 EVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 241
+ +D + E + E + + + + D + Q E +K V+ +
Sbjct: 438 QKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAE 497
Query: 242 RAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAE 301
A+A + + +++ E++ + Q + E + + KE E ++ + +
Sbjct: 498 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 557
Query: 302 KYRIEKLAQANKKRLMIEAE 321
+ +++ Q + + E +
Sbjct: 558 EQLLKEGFQKESRIMKNEIQ 577
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated
protein, nascent chain, cell division, isomerase; 2.7A
{Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1
PDB: 2vrh_A 1w2b_5
Length = 432
Score = 34.6 bits (80), Expect = 0.053
Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 198 ARIKEAMAEEEKMAARFVNDTEIAKA---QRDFEIKKATYDAEVETKRAEAELAFELQAA 254
A +++ M E K A R ++ + D ++ A D+E++ R +A F
Sbjct: 268 AEVRKNMERELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEK 327
Query: 255 KTKQRIKEEQMKI------------QVIERNQEIQVQEQEIQRRKKELESSVNRPAEA-E 301
+ + +E + +VI N E++ E+ ++ +E+ S+ P E E
Sbjct: 328 QALELPRELFEEQAKRRVVVGLLLGEVIRTN-ELKADEERVKGLIEEMASAYEDPKEVIE 386
Query: 302 KYRIEKLAQANKKRLMIE 319
Y K N + + +E
Sbjct: 387 FYSKNKELMDNMRNVALE 404
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase,
chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1
d.241.2.1 d.26.1.1 PDB: 1l1p_A
Length = 392
Score = 32.2 bits (74), Expect = 0.23
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 198 ARIKEAMAEEEKMAARFVNDTEIAKA---QRDFEIKKATYDAEVETKRAEAELAFELQAA 254
A +++ M E K A + + + + + ++ A D E+ R +A F
Sbjct: 271 AEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVLRQQAAQRFGGNVE 330
Query: 255 KTKQRIKE---EQMKIQV--------IERNQEIQVQEQEIQRRKKELESSVNRPAEAEKY 303
Q +E EQ K +V + R E++ E++++ E+ ++ P+E Y
Sbjct: 331 AAAQLPRELFEEQAKRRVVVGLLLGEVIRTHELKADEEKVKALITEMATAYEDPSEVVSY 390
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.25
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 27/97 (27%)
Query: 186 DARIGEAEAQK------DARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVE 239
D E E+ + R++E A + M + KA++D E E
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEW-----REKAKKDLE--------EWN 124
Query: 240 TKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEI 276
+++E +++ K RI ++ + + +I
Sbjct: 125 QRQSE-----QVEKNKINNRIADKAF---YQQPDADI 153
Score = 31.7 bits (71), Expect = 0.28
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 254 AKTKQRIKE-EQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEKLAQAN 312
A+ + +E E ++ E+ + +Q + + ++E + E R + + N
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 313 KKRLMIEAEA-----EAEAI 327
K I +A +A+ I
Sbjct: 135 KINNRIADKAFYQQPDADII 154
Score = 27.8 bits (61), Expect = 4.6
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 319 EAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKD 358
E E+IR E + + A + W++
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAAS----KVMEQEWRE 114
Score = 27.8 bits (61), Expect = 5.0
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 16/64 (25%)
Query: 298 AEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWK 357
E E I K + +KRL E +A + + KA+ ++E E +
Sbjct: 82 QEPES--IRKWREEQRKRL---QELDAAS-----KVMEQEWREKAKKDLE------EWNQ 125
Query: 358 DYRE 361
E
Sbjct: 126 RQSE 129
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane
protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Length = 133
Score = 29.4 bits (67), Expect = 0.87
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 107 IQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIR 166
+ +A TL R +G+ ++ I DR++ + + + GI V +KD++
Sbjct: 63 TRLLAQTTL----RNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVK 118
Query: 167 DDEGYLKSLGMARTAE 182
++ MA AE
Sbjct: 119 LPVQLQRA--MAAEAE 132
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 30.1 bits (67), Expect = 0.92
Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 1/147 (0%)
Query: 225 RDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQ 284
K + + E A +LQ +K +Q +++ KI I++ E+E++
Sbjct: 35 DKALNDKEAKNKAILNLEEEKL-ALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELR 93
Query: 285 RRKKELESSVNRPAEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARA 344
E + + R +A + + +K E + K E ++
Sbjct: 94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVK 153
Query: 345 EVEIMTKKAEAWKDYREAAVIDMILES 371
++ + K+ I
Sbjct: 154 NIKETQQIIFKKKEDLVEKTEPKIYSF 180
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus
horikoshii}
Length = 113
Score = 28.7 bits (65), Expect = 1.0
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 107 IQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIR 166
I +A L RAI+G M +++ R + ++ + G+ + ++ I
Sbjct: 54 IVKLAQTNL----RAIIGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRID 109
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet,
PSI, protein structure initiative; NMR {Archaeoglobus
fulgidus} SCOP: g.41.8.4
Length = 66
Score = 27.8 bits (62), Expect = 1.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 71 GAAKLTGEILTIVNVMDEEGHEQKH 95
G + EI+ V+ ++ E H H
Sbjct: 42 GKGNIKAEIIEYVDQIELEHHHHHH 66
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 30.4 bits (69), Expect = 1.2
Identities = 7/112 (6%), Positives = 23/112 (20%), Gaps = 4/112 (3%)
Query: 184 KRDARIGEAEAQKDARIKEAMAEEEKMAARFV----NDTEIAKAQRDFEIKKATYDAEVE 239
K + + + + + + + + Q + ++
Sbjct: 897 KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL 956
Query: 240 TKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELE 291
EL +Q + + Q+I+
Sbjct: 957 NYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 30.1 bits (68), Expect = 1.4
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 13/135 (9%)
Query: 162 LKDIRDDEGYLKSLGMARTAEVKRDARIGEAEA--QKDARIKEAMAEEEKMAARFVNDT- 218
L R D+G + R + KR G + + D+ + + + N
Sbjct: 5 LDLFRVDKG--GDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLK-NLCS 61
Query: 219 -EIAKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQ 277
I + K + E L+F+ A +K Q+K + ++ I
Sbjct: 62 KTIGEK------MKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAIL 115
Query: 278 VQEQEIQRRKKELES 292
+ E + + E
Sbjct: 116 KCDAERIKLEAERFE 130
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 97
Score = 28.3 bits (63), Expect = 1.5
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 101 HISEDEIQNIALVTLEGHQRAIMGS 125
+S +Q +T E H R ++ +
Sbjct: 55 SLSHTCLQEAG-ITEERHIRKLLSA 78
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 29.7 bits (66), Expect = 1.8
Identities = 29/199 (14%), Positives = 70/199 (35%), Gaps = 18/199 (9%)
Query: 131 IYKDRKKFSKQVFQVASSDLVNMGITVVS--YTLKDIRDDEGYLKSLGMARTAEVKRDAR 188
++ + K+ +F ++ ++N + + T K R Y S+ + + ++K
Sbjct: 379 LFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFR---TYNASITLQQ--QLKELTA 433
Query: 189 IGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAELA 248
E K A + A N + + + K A+
Sbjct: 434 PDENIPAKILSYNRAN----RAVAILCNHQRAPPKTFEKSMMNLQTKID-AKKEQLADAR 488
Query: 249 FELQAAKTKQRIKEEQMKIQVIERNQEI------QVQEQEIQRRKKELESSVNRPAEAEK 302
+L++AK ++ ++ +V+E ++ Q+ + E+Q +E +
Sbjct: 489 RDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLN 548
Query: 303 YRIEKLAQANKKRLMIEAE 321
Y ++ A K+ + E
Sbjct: 549 YLDPRITVAWCKKWGVPIE 567
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.3 bits (65), Expect = 2.0
Identities = 27/185 (14%), Positives = 66/185 (35%), Gaps = 31/185 (16%)
Query: 141 QVFQVASSDLVNMGITVVSYTLKDIRDD------EGY----LKSLGMARTAEVKRDARIG 190
QV A D V + ++ ++D+R+ E Y L+ +G T + +
Sbjct: 262 QVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQ 321
Query: 191 EAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFE 250
E K + ++E+ E+++ E + E E
Sbjct: 322 ETYEAKRNEFLGELQKKEE------------------EMRQMFVQRVKEKEAELKEAEKE 363
Query: 251 LQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEKLAQ 310
L + + + K ++ ++ + + + ++RK E ++ ++A + K
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKR-- 421
Query: 311 ANKKR 315
+K++
Sbjct: 422 -DKEK 425
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 28.4 bits (62), Expect = 2.0
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 261 KEEQMKI-QVIERNQEIQVQEQEIQRRKKELESSVNRPA 298
EE+ I +VI R ++++ EQE R + ++ +
Sbjct: 12 DEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNV 50
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter
jejuni}
Length = 252
Score = 29.0 bits (65), Expect = 2.1
Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 4/136 (2%)
Query: 215 VNDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQ 274
VN I+ + A + K L Q + + K Q +E++
Sbjct: 6 VNGKSISDT--EVSEFFAPMLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDP 63
Query: 275 EIQVQEQEIQRR--KKELESSVNRPAEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGE 332
+ + + + + + +++ NK + + A +A+ I + E
Sbjct: 64 LYTKELDRAKDAILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATE 123
Query: 333 AEAAAIAAKARAEVEI 348
EA I + +
Sbjct: 124 KEAKDIINELKGLKGK 139
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase,
transferase, sulfate metabolism, nucleotide 2 kinase;
2.95A {Thiobacillus denitrificans}
Length = 552
Score = 29.5 bits (66), Expect = 2.2
Identities = 4/40 (10%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 102 ISEDEIQNIAL---VTLEGHQRAIMGSMSVEDIYKDRKKF 138
+ + + + L + ++ +++ D++KD +++
Sbjct: 88 SRDRALADRRPGERLALRDGEGYMLAILTLSDVWKDGERW 127
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 28.7 bits (64), Expect = 3.2
Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 204 MAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEE 263
MA E++AA + E +T + + KR + + + AA ++ KE
Sbjct: 1 MAGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKES 60
Query: 264 QMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEK-----LAQANKKRLMI 318
+ + R E E + + E A +K + +K Q + + I
Sbjct: 61 GASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPI 120
Query: 319 EA--------EAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVI 365
+ + + AA + + + E W D+REAA
Sbjct: 121 CDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEA 175
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA
damage, DNA recombinat repair, nucleotide-binding; HET:
DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Length = 400
Score = 28.5 bits (63), Expect = 3.3
Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 14/130 (10%)
Query: 238 VETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRP 297
V+ + E +EQ + Q ++ ++L+ +
Sbjct: 34 VDGNGNGSSEDIEATNGSGDGGGLQEQAEAQGEMEDEAYDEAALGSFVPIEKLQVNGITM 93
Query: 298 AEAEKYR------IEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTK 351
A+ +K R E +A A +K L+ EA+A + +A V +
Sbjct: 94 ADVKKLRESGLHTAEAVAYAPRKDLLEIKG--------ISEAKADKLLNEAARLVPMGFV 145
Query: 352 KAEAWKDYRE 361
A + R
Sbjct: 146 TAADFHMRRS 155
>2hew_F Tumor necrosis factor ligand superfamily member 4; trimer, TNFSF,
cytokine; HET: NAG; 1.45A {Mus musculus} SCOP: b.22.1.1
PDB: 2hey_F
Length = 152
Score = 27.9 bits (61), Expect = 3.4
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 2 GSFMDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVT 61
GSF V +L + ++ P+ P N + ++ + + + +V V AP + + +
Sbjct: 62 GSFFQEVKIDLHFREDHNPISIPMLNDGRRIVFTVVASLAFKDKVYLTVNAPDTLCEHLQ 121
Query: 62 MVSSGSGELGAAKLT 76
+ GEL +LT
Sbjct: 122 I---NDGELIVVQLT 133
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP;
2.31A {Aquifex aeolicus}
Length = 546
Score = 28.8 bits (64), Expect = 3.9
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 108 QNIALVTLEGHQRAIMGSMSVEDIYK-DRKKFSKQVF 143
+ I L + + M VE++YK + + +K V
Sbjct: 75 EWIVLRDPKN---VPLAIMRVEEVYKWNLEYEAKNVL 108
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.0 bits (62), Expect = 5.4
Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 14/172 (8%)
Query: 178 ARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAE 237
A+ E++ + R + + +IKE +E + F+N A+ + + +
Sbjct: 97 AKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVT 156
Query: 238 VETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRP 297
K E +LQ + +++E ER V +E + + L++++
Sbjct: 157 SYNKILTEE---DLQMRRLATALQKEIG-----ERTHAETVMVKEYRDKIDALKNAI--- 205
Query: 298 AEAEKYRIEKLAQANKKRLMIE-AEAEAEAIRLKGEAEAAAIAAKARAEVEI 348
E E+ +++ A + + EA +E + L G A A+A RA
Sbjct: 206 -EVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVAT-GRAIEGA 255
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 27.1 bits (61), Expect = 5.4
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 238 VETKRAEAELAF-----ELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQ---RRKKE 289
R EAE + ELQ + K ++ E N+ IQ EI ++
Sbjct: 2 ANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCAN 61
Query: 290 LESSVNRPAEAEKYRIEKLAQANKKRLMIEAE 321
L++++ A+AE+ L A K +E
Sbjct: 62 LQNAI---ADAEQRGELALKDARNKLAELEEA 90
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 27.2 bits (59), Expect = 6.7
Identities = 7/28 (25%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 262 EEQMKI-QVIERNQEIQVQEQEIQRRKK 288
EE + V++R+ +++ +E+E + K
Sbjct: 20 EEAEHVWAVVQRDFDLRRREEERLQGLK 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 7.7
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 176 GMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYD 235
G+ E+K E + + +++A++ E + + VN A Y
Sbjct: 730 GLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNS----------ADAAYA 779
Query: 236 AEVETKRAEAELAF-ELQAAKTKQRIKEEQMKIQV 269
RA +L F EL+ K ++I +++ +
Sbjct: 780 QVEIQPRANIQLDFPELKPYKQVKQIAPAELEGLL 814
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 27.2 bits (60), Expect = 8.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 305 IEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVE 347
+ + +A + L+ EAEA+AEA++ + E +A A+ +E
Sbjct: 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALE 49
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Length = 997
Score = 27.5 bits (61), Expect = 9.9
Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 20/191 (10%)
Query: 191 EAEAQKDARIKEAMAEEEKMAARF-------VNDTEIAKAQRDF---EIKKATYDAEVET 240
E E + + A ++E +A T +R + + +V
Sbjct: 491 EWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLN 550
Query: 241 KRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEA 300
+ A A + A R K + + R +I++ LE E
Sbjct: 551 AKHHAREAEIVAQAG---RSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEW 607
Query: 301 EKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYR 360
+ + K+++ E EA A+ + + E +
Sbjct: 608 K-------VELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGG 660
Query: 361 EAAVIDMILES 371
+ ES
Sbjct: 661 LFIIGTERHES 671
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.126 0.326
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,630,408
Number of extensions: 366794
Number of successful extensions: 1137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 988
Number of HSP's successfully gapped: 189
Length of query: 374
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 279
Effective length of database: 4,049,298
Effective search space: 1129754142
Effective search space used: 1129754142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.0 bits)