RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6112
         (374 letters)



>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 143

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 37/79 (46%), Positives = 59/79 (74%)

Query: 103 SEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTL 162
           +  +I+N+ L TLEGH R+I+G+++VE IY+DR +F+K V +VA+ D+  MGI ++S+T+
Sbjct: 60  NVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 119

Query: 163 KDIRDDEGYLKSLGMARTA 181
           KD+ D   YL SLG  +T+
Sbjct: 120 KDVYDKVDYLSSLGKTQTS 138


>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 124

 Score = 28.5 bits (63), Expect = 0.65
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 262 EEQMKI-QVIERNQEIQVQEQEIQRRKKE 289
           EE+  I +VI R ++++  EQE   R  +
Sbjct: 6   EEKEIINRVIARAEKMETMEQERIGRLVD 34


>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus
           [TaxId: 12455]}
          Length = 343

 Score = 26.5 bits (58), Expect = 5.5
 Identities = 10/33 (30%), Positives = 22/33 (66%)

Query: 269 VIERNQEIQVQEQEIQRRKKELESSVNRPAEAE 301
           VI  + +I+   ++I++R K + +++NRP+  E
Sbjct: 121 VIGSSSKIKAGAEQIKKRFKTMMAALNRPSHGE 153


>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 326

 Score = 25.9 bits (56), Expect = 8.3
 Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 305 IEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEV-EIM 349
           IE L    ++        E + +  +G  +A  +A++   ++ + M
Sbjct: 277 IETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQAM 322


>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
           {Burkholderia glumae [TaxId: 337]}
          Length = 280

 Score = 25.8 bits (56), Expect = 8.8
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 4/145 (2%)

Query: 192 AEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFEL 251
              +        ++ E+K A         A+   D   ++A   A+ +     A+L    
Sbjct: 139 DLERIRIANDTTLSPEQKAARL---AALDAQLTPDERAQQAALHAQQDAVTKIADLQKAG 195

Query: 252 QAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEKLAQA 311
                 +    + +  +   R  ++Q  ++  Q R +   +  +R A       ++ A+ 
Sbjct: 196 ATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARI 255

Query: 312 NKKRLMIEAEAEAEAIRLKGEAEAA 336
            + R      A  EAIR       A
Sbjct: 256 AQLRQQ-TFTAPGEAIRAASLDRGA 279


>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
           (Solanum tuberosum) [TaxId: 4113]}
          Length = 364

 Score = 25.7 bits (55), Expect = 9.7
 Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 258 QRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIE 306
            R++           ++E+   ++ +   K++         E E+ + E
Sbjct: 317 SRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRK-GDDEELEEIQDE 364


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.126    0.326 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,274,697
Number of extensions: 59810
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 48
Length of query: 374
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,213,086
Effective search space: 348155682
Effective search space used: 348155682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)