RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6113
(406 letters)
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 266 bits (682), Expect = 1e-87
Identities = 124/330 (37%), Positives = 168/330 (50%), Gaps = 77/330 (23%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+ LSG T+FITGASRGI G I + A A++
Sbjct: 1 SLTLSGKTLFITGASRGI-----------GLAIALRA----------------ARD---- 29
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
G ++ + A S P + +
Sbjct: 30 -----------------------------GANVAIA---AKSAVANPKLPGTIHSAAAAV 57
Query: 124 NARGTYLVKA-------SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKY 176
NA G + + ++++AV A VD FGGIDILVNNASAI L T +TP+K++
Sbjct: 58 NAAG---GQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRF 114
Query: 177 DLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMC 236
DLM Q+NARG+++ +Q CLP+L ++ + HIL ++PP +LNP W+ H YT++K GMS+
Sbjct: 115 DLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLV 174
Query: 237 ALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSN 296
LG+A EF +A+NALWPRT I T AI ML G A A R+PEIMADAA+ +L+
Sbjct: 175 TLGLAAEFGPQGVAINALWPRTVIATDAINMLPGVDAAA---CRRPEIMADAAHAVLTRE 231
Query: 297 PPSLTGQFLIDDEVLKAQHI-DLEQYSYVP 325
GQFLIDDEVL I DL Y+ P
Sbjct: 232 AAGFHGQFLIDDEVLAQAGITDLSGYAVDP 261
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 252 bits (647), Expect = 3e-82
Identities = 116/328 (35%), Positives = 155/328 (47%), Gaps = 71/328 (21%)
Query: 3 NTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED 62
+ L G T+FI+G SRGI G I A +
Sbjct: 3 GSMSLRGKTMFISGGSRGI-----------GLAIAKRV----------------AAD--- 32
Query: 63 AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQ 122
G ++ + A S P Y +
Sbjct: 33 ------------------------------GANVALV---AKSAEPHPKLPGTIYTAAKE 59
Query: 123 INARG----TYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDL 178
I G + G + +AV V++FGGIDI VNNASAI+L PLK++DL
Sbjct: 60 IEEAGGQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDL 119
Query: 179 MNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCAL 238
MN I RGTY VSQ C+P++K ++ HIL +SPP+ L P W Y ++KYGM++CAL
Sbjct: 120 MNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWL-RPTPYMMAKYGMTLCAL 178
Query: 239 GMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPP 298
G+AEE + IA N LWPRT + TAA++ L GG A A SRKPE+ ADAAY +L+ P
Sbjct: 179 GIAEELRDAGIASNTLWPRTTVATAAVQNLLGGDE-AMARSRKPEVYADAAYVVLNK-PS 236
Query: 299 SLTGQFLIDDEVLKAQHI-DLEQYSYVP 325
S TG L+ ++VL + DL Y VP
Sbjct: 237 SYTGNTLLCEDVLLESGVTDLSVYDCVP 264
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 247 bits (631), Expect = 3e-79
Identities = 129/248 (52%), Positives = 161/248 (64%), Gaps = 15/248 (6%)
Query: 83 AVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARG----TYLVKASQGLE 138
A+ AA D G +I++ A + Y +I A G +V +
Sbjct: 62 ALKAAKD---GANIVIA---AKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQ 115
Query: 139 IQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYL 198
I +AV A+ KFGGIDILVNNASAISLT+T +TP K+ DLM +N RGTYL S+ C+PYL
Sbjct: 116 ISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYL 175
Query: 199 KKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPRT 258
KKS AHILNISPPLNLNP WFK H AYTI+KYGMSM LGMAEEFK IAVNALWP+T
Sbjct: 176 KKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEFK-GEIAVNALWPKT 234
Query: 259 AIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPSLTGQFLIDDEVLKAQHI-D 317
AI+TAA++ML G ++ RK +I+ADAAY I P S TG F+ID+ +LK + I +
Sbjct: 235 AIHTAAMDMLGG--PGIESQCRKVDIIADAAYSIFQK-PKSFTGNFVIDENILKEEGIEN 291
Query: 318 LEQYSYVP 325
+ Y+ P
Sbjct: 292 FDVYAIKP 299
Score = 204 bits (521), Expect = 8e-63
Identities = 95/131 (72%), Positives = 111/131 (84%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
+ NTG+L+G T+FITGASRGIGKAIALKAAKDGANIVIAAKTA+PHPKL GTIY+AA+E+
Sbjct: 37 LPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEI 96
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
E GG LPCIVD+RDE + +AV A+ KFGGIDILVNNASAISLT+T +TP K+ DLM
Sbjct: 97 EAVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLM 156
Query: 121 NQINARGTYLV 131
+N RGTYL
Sbjct: 157 MNVNTRGTYLA 167
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 137 bits (348), Expect = 3e-38
Identities = 68/316 (21%), Positives = 115/316 (36%), Gaps = 78/316 (24%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
++G +TGASRGIG+ IAL+ K GA + I + + T+ A+E + G
Sbjct: 1 APMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLD-------TLRVVAQEAQSLG 53
Query: 65 GNCLPCIVDIRDEHAVQSAVN-AAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
G C+P + D E V+S ++ G +D+LVNNA + NT
Sbjct: 54 GQCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNA-YAGVQTILNT----------- 101
Query: 124 NARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 183
R + TP +D +N +
Sbjct: 102 --RNKAFWE--------------------------------------TPASMWDDINNVG 121
Query: 184 ARGTYLVSQKCLPYLKKSNHAHILNISPPLNL-NPFWFKNHVAYTISKYGMSMCALGMAE 242
RG Y S + + I+ IS P +L F +V Y + K A A
Sbjct: 122 LRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMF----NVPYGVGKAACDKLAADCAH 177
Query: 243 EFKGDNIAVNALWP---RTAIYTAAI-------EMLTGGSADAKATSRKPEIMADAAYYI 292
E + ++ +LWP +T + + + + A +++ E+
Sbjct: 178 ELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVA- 236
Query: 293 LSSNPPS--LTGQFLI 306
L+++P L+G+ L
Sbjct: 237 LATDPNILSLSGKVLP 252
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 119 bits (302), Expect = 2e-31
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIV---IAAKTAEPHPKLPGTIYSA---A 57
GKL G FITGA+RG G+A A++ A +GA+I+ IA K P P +
Sbjct: 6 AGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETV 65
Query: 58 KEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKY 117
+ VE A + +VD RD ++ V+ V G +DI+V NA + + + +
Sbjct: 66 RLVEAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDF 125
Query: 118 DLMNQINARGTYL-VKA 133
+ IN GT+ V A
Sbjct: 126 RDVMDINVTGTWNTVMA 142
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 118 bits (297), Expect = 1e-30
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSA---- 56
G L G FITGA+RG G++ A++ A +GA+I+ A + S
Sbjct: 7 AGQAGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLD 66
Query: 57 --AKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPL 114
A+ VED G L ++D+RD+ A++ V +++FG +D++V NA +S
Sbjct: 67 ETARLVEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTD 126
Query: 115 KKYDLMNQINARGTYL-VKA 133
+++D + +N GT+ ++A
Sbjct: 127 EQWDTVIGVNLTGTWRTLRA 146
Score = 66.0 bits (162), Expect = 2e-12
Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 4/153 (2%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
++ V +++FG +D++V NA +S +++D + +N GT+ + +P
Sbjct: 91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPA 150
Query: 198 LKKSNH-AHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
+ ++ + I+ +S L + Y+ SK+G++ +A E I VN++ P
Sbjct: 151 MIEAGNGGSIVVVSSSAGLKA--TPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHP 208
Query: 257 RTAIYTAAIEMLTGGSADAKATSRKPEIMADAA 289
++ T IE A+ S
Sbjct: 209 -YSVETPMIEPEAMMEIFARHPSFVHSFPPMPV 240
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 115 bits (291), Expect = 4e-30
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
G L+ + I+G +G +A + A+ GA++V+AA+T E + AK+V D
Sbjct: 6 GGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVER-------LEDVAKQVTDT 58
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAI-SLTDTANTPLKKYDLMNQ 122
G L DI D+ V V+ + +G +D+++NNA + S+ ANT + +
Sbjct: 59 GRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIE 118
Query: 123 INARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLT 166
+ G + IQ A + G + VN S +
Sbjct: 119 LTVFGALRL-------IQGFTPALEESKGAV---VNVNSMVVRH 152
Score = 75.3 bits (186), Expect = 1e-15
Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 22/186 (11%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAI-SLTDTANTPLKKYDLMNQINARGTYLVSQKCLP 196
++ V+ + +G +D+++NNA + S+ ANT + ++ G + Q P
Sbjct: 74 QVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTP 133
Query: 197 YLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
L++S A ++N++ + + + AY ++K + + +A E I VN++ P
Sbjct: 134 ALEESKGA-VVNVNSMVVRHSQA--KYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLP 190
Query: 257 RTAIYTAAIEMLTGGSADAKATSR-----------------KPEIMADAAYYILSSNPPS 299
I+ ++ A TS + +A A ++ S
Sbjct: 191 -GYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFMASDLASG 249
Query: 300 LTGQFL 305
+TGQ L
Sbjct: 250 ITGQAL 255
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 116 bits (292), Expect = 6e-30
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIA--AKTAEPHPKLPGTIYSA---AKE 59
G++ + +TG +RG G++ A+K A++GA+I++ E + T E
Sbjct: 6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLE 65
Query: 60 VEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDL 119
VE G VD+RD AV + AV +FG +D++V NA I A+ P++ +
Sbjct: 66 VEKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANA-GI-CPLGAHLPVQAFAD 123
Query: 120 MNQINARGTYL-VKA 133
++ G V A
Sbjct: 124 AFDVDFVGVINTVHA 138
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 114 bits (289), Expect = 7e-30
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+ + + ITG S G+GK +A + AK+GA +VI +T E + A E+E
Sbjct: 1 SNAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEK-------LEEAKLEIEQF 53
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
G L +D+R+ +Q + +KFG IDIL+NNA+ + + + ++ + I
Sbjct: 54 PGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINI 113
Query: 124 NARGTYLV 131
GT+
Sbjct: 114 VLNGTFYC 121
Score = 71.4 bits (176), Expect = 2e-14
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 14/182 (7%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+IQ + +KFG IDIL+NNA+ + + + ++ + I GT+ SQ Y
Sbjct: 69 DIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKY 128
Query: 198 LKKSNH-AHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGD-NIAVNALW 255
+ +I+N+ + + +K G+ +A E+ I VNA+
Sbjct: 129 WIEKGIKGNIINMVATYAWDAGPG--VIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIA 186
Query: 256 PRTAIYT--AAIEMLTGGSADAKATSR-------KPEIMADAAYYILSSNPPSLTGQFLI 306
P I A ++ + PE +A AYY+ S + G +
Sbjct: 187 P-GPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLAYYLCSDEAAYINGTCMT 245
Query: 307 DD 308
D
Sbjct: 246 MD 247
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 114 bits (288), Expect = 2e-29
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSA------- 56
TG++ G F+TGA+RG G++ A++ A++GA+I+ + T A
Sbjct: 6 TGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLA 65
Query: 57 --AKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNAS-AISLTDTANTP 113
A V+ + VD+RD A+++AV++ V++ G +DI+V NA T
Sbjct: 66 ETADLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTS 125
Query: 114 LKKYDLMNQINARGTYL-VKA 133
+ + M IN G + VKA
Sbjct: 126 EEDWTEMIDINLAGVWKTVKA 146
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 113 bits (285), Expect = 3e-29
Identities = 60/315 (19%), Positives = 104/315 (33%), Gaps = 82/315 (26%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
+L +TG ++ IG A A+ GA ++IA A +++ G
Sbjct: 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEA-------MATKAVEDLRMEGH 62
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 125
+ ++D+ + +VQ+AV + ++ G +DILV A
Sbjct: 63 DVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACA------------------------ 98
Query: 126 RGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 185
GI I + A +TD ++ IN
Sbjct: 99 --------------------------GICI--SEVKAEDMTD------GQWLKQVDINLN 124
Query: 186 GTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFK 245
G + Q + + I+ I L + AY SK G+ +A E+
Sbjct: 125 GMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWA 184
Query: 246 GDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-----------KPEIMADAAYYILS 294
I NA+ P T I T + G + +P+ +A + L+
Sbjct: 185 PHGIRANAVAP-TYIET---TLTRFGMEKPELYDAWIAGTPMGRVGQPDEVASVVQF-LA 239
Query: 295 SNPPS-LTGQFLIDD 308
S+ S +TG + D
Sbjct: 240 SDAASLMTGAIVNVD 254
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 113 bits (286), Expect = 4e-29
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIA--AKTAEPHPKLPGTIYSA---AK 58
GK+ G FITGA+RG G++ A+ A++GA+I+ K + T +
Sbjct: 23 AGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVR 82
Query: 59 EVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNAS-AISLTDTANTPLKKY 117
+VE G + VD+RD A+Q+AV+ V + G +DI++ NA+ A T K +
Sbjct: 83 QVEALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTW 142
Query: 118 DLMNQINARGTYL-VKA 133
M +N G ++ +
Sbjct: 143 RDMIDVNLNGAWITARV 159
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 113 bits (286), Expect = 6e-29
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
M+ G FITG G+GK + + GA VIA++ + + + A+++
Sbjct: 18 MLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD-------VLKATAEQI 70
Query: 61 EDA-GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDL 119
G D+RD VQ+ V+ + G +I++NNA+ ++ T +
Sbjct: 71 SSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKT 130
Query: 120 MNQINARGTYLV 131
+ I GT V
Sbjct: 131 ITDIVLNGTAFV 142
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 112 bits (282), Expect = 1e-28
Identities = 52/308 (16%), Positives = 94/308 (30%), Gaps = 77/308 (25%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
G G +TG G+G+ IA + +G ++VI + + A + G
Sbjct: 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAA------AGEIGGRTG 82
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 124
+ D+ D V + A +F +D+LVN
Sbjct: 83 NIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVN------------------------- 117
Query: 125 ARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 184
NA G N + L + ++++ + N
Sbjct: 118 -------------------NA------GS-----NVPPVPLEEV---TFEQWNGIVAANL 144
Query: 185 RGTYLVSQKCLPYLKKSNHA--HILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAE 242
G +L +Q +K I+N P N YT +K+ ++ A
Sbjct: 145 TGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRP--NSAPYTATKHAITGLTKSTAL 202
Query: 243 EFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-----KPEIMADAAYYILSSNP 297
+ + +IA + T ++ G A E +A+A Y ++S P
Sbjct: 203 DGRMHDIACGQIDI-GNAATDMTARMSTGVLQANGEVAAEPTIPIEHIAEAVVY-MASLP 260
Query: 298 PS--LTGQ 303
S +
Sbjct: 261 LSANVLTM 268
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 111 bits (281), Expect = 1e-28
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIA--AKTAEPHPKLPGTIYSA---AK 58
G L+G FITGA+RG G+A A++ A DGA+I+ P T K
Sbjct: 8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVK 67
Query: 59 EVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA--SAISLTDTANTPLKK 116
VED G + D+RD ++ +A+ A +D+ G +DI+V NA + +S D
Sbjct: 68 LVEDIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDG------ 121
Query: 117 YDLMNQINARGTYL-VKA 133
+ + +N G Y +K
Sbjct: 122 WHDVIDVNLTGVYHTIKV 139
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 112 bits (283), Expect = 2e-28
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSA------AK 58
+L G FITGA+RG G+ A++ A+DGA+I +A P L S +
Sbjct: 42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADI-VAIDLCRQQPNLDYAQGSPEELKETVR 100
Query: 59 EVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYD 118
VE+ G + D+RD ++Q+ V+ A+ +FG IDILV+N + + + +++
Sbjct: 101 LVEEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWS 160
Query: 119 LMNQINARGTYL-VKA 133
+ Q N G + +A
Sbjct: 161 DILQTNLIGAWHACRA 176
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 110 bits (278), Expect = 3e-28
Identities = 66/316 (20%), Positives = 110/316 (34%), Gaps = 88/316 (27%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L G I +TGA+RGIG A A A GA++V+ +T ++ EV D
Sbjct: 12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTE-----------ASLAEVSDQ--- 57
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
I+ Q + A +++ A
Sbjct: 58 -------IKSAGQPQPLIIA-------LNLENATAQ------------------------ 79
Query: 127 GTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAI-SLTDTANTPLKKYDLMNQINAR 185
+ + +FG +D L++NAS I T P + + + +N
Sbjct: 80 -----------QYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVN 128
Query: 186 GTYLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGMAEE 243
T+++++ LP LK+S A I S + W AY +SK+ +A+E
Sbjct: 129 ATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANW----GAYGVSKFATEGLMQTLADE 184
Query: 244 FKG-DNIAVNALWP---RTAIYTAAIEMLTGGSADAKATSRK-PEIMADAAYYILSSNPP 298
+G + N++ P RT M D + PE + Y++ +
Sbjct: 185 LEGVTAVRANSINPGATRT-------GMRAQAYPDENPLNNPAPEDIMPVYLYLMGPDST 237
Query: 299 SLTGQFLIDDEVLKAQ 314
+ GQ L AQ
Sbjct: 238 GINGQ------ALNAQ 247
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 110 bits (278), Expect = 4e-28
Identities = 58/322 (18%), Positives = 108/322 (33%), Gaps = 89/322 (27%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
+ L+ +TG GIG+A A AK+GA +V+A
Sbjct: 19 YFQSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVA--------------------- 57
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISL--TDTANTPLKKYD 118
D+ ++ A ++ G A + + +
Sbjct: 58 ------------DVNED-----AAVRVANEIGS------KAFGVRVDVSSAK-------- 86
Query: 119 LMNQINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDL 178
+ +S V K+G +D+LVNNA + + P + +D
Sbjct: 87 -------------------DAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDR 127
Query: 179 MNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCAL 238
+ +N +G +L S+ +P ++++ I+N + + + AY SK +S
Sbjct: 128 IMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIA--DRTAYVASKGAISSLTR 185
Query: 239 GMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR------------KPEIMA 286
MA + + I VNA+ P I + + + D E +A
Sbjct: 186 AMAMDHAKEGIRVNAVAP-GTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDRMGTAEEIA 244
Query: 287 DAAYYILSSNPPSLTGQ-FLID 307
+A ++ S TG +D
Sbjct: 245 EAMLFLASDRSRFATGSILTVD 266
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 109 bits (274), Expect = 7e-28
Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 11/128 (8%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+S I +TGA G+G+A+ + + G + + + + ++ G
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQR----------LQQQELLLGNA 50
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
+ + D+ V A AAV+ G +++++ A ++ + + N
Sbjct: 51 VIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLV 110
Query: 127 GT-YLVKA 133
T + +
Sbjct: 111 STILVAQQ 118
Score = 88.4 bits (220), Expect = 2e-20
Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 8/169 (4%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
++ A AAV+ G +++++ A ++ + + N T LV+Q+ +
Sbjct: 63 DVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRL 122
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPR 257
+ + + N+ N Y SK+GM + E K + + L+P
Sbjct: 123 IGERG-GVLANVLSSAAQVG--KANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYP- 178
Query: 258 TAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPS-LTGQFL 305
+ I + E + PE A L + +T F+
Sbjct: 179 SGIRS---EFWDNTDHVDPSGFMTPEDAAAYMLDALEARSSCHVTDLFI 224
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 109 bits (276), Expect = 7e-28
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 10/134 (7%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVI---AAKTAEPHPKLPGTIYSAA 57
+ L I I G + +G A A + N+V+ AK ++ KL
Sbjct: 3 LTKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKL-------K 55
Query: 58 KEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKY 117
E+ED G D+ +E V + A +FG +DI +N + T ++
Sbjct: 56 DELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEF 115
Query: 118 DLMNQINARGTYLV 131
D M+ IN + Y
Sbjct: 116 DAMDTINNKVAYFF 129
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 110 bits (276), Expect = 7e-28
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
+ L FITG GIG IA + G + VIA+++ ++ A K
Sbjct: 19 LFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLP---RVLTA---ARKLA 72
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
G CLP +D+R AV +AV+ A+ +FG IDIL+N A+ L + +
Sbjct: 73 GATGRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTV 132
Query: 121 NQINARGTYLV 131
I+ GT+ V
Sbjct: 133 MDIDTSGTFNV 143
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 109 bits (276), Expect = 9e-28
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSA------AK 58
G T ITG +RG+G++ A+ A+ GA+I E + + +A
Sbjct: 6 ADFEGKTALITGGARGMGRSHAVALAEAGADI-AICDRCENSDVVGYPLATADDLAETVA 64
Query: 59 EVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
VE G C+ VD++D A++S V A D GGIDI + NA
Sbjct: 65 LVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNA 107
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 110 bits (277), Expect = 1e-27
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
+ G L G +TG + GIGKAI + + G+N+VIA++ E + A
Sbjct: 10 YLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADEL--QANLP 67
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
+P +IR+E V + V + +D FG I+ LVNN L+ + K + +
Sbjct: 68 PTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAV 127
Query: 121 NQINARGTYLV 131
+ N GT+ +
Sbjct: 128 LETNLTGTFYM 138
Score = 69.2 bits (170), Expect = 2e-13
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 18/208 (8%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
E+ + V + +D FG I+ LVNN L+ + K + + + N GT+ + +
Sbjct: 86 EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSS 145
Query: 198 LKKSNHAHILNIS-PPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
K + I+NI P P V ++ G+ +A E+ I +N + P
Sbjct: 146 WMKEHGGSIVNIIVPTKAGFPL----AVHSGAARAGVYNLTKSLALEWACSGIRINCVAP 201
Query: 257 RTAIYTA-AIEMLTGGSADAKATSRK---------PEIMADAAYYILSSNPPSLTGQFLI 306
IY+ A+E S + PE ++ ++LS +TGQ +
Sbjct: 202 -GVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVD 260
Query: 307 DD--EVLKAQHIDLEQYSYVPNGAAEGS 332
D L ++ + P GA + S
Sbjct: 261 VDGGRSLYTHSYEVPDHDNWPKGAGDLS 288
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 109 bits (274), Expect = 1e-27
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+L G + ITG++RGIG+A A ++GA + IA E A + +
Sbjct: 3 MKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIE----------RARQAAAEI 52
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
G +D+ + ++ +A+ A V+ GG+DILVNNA+ L + Y+ + I
Sbjct: 53 GPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAI 112
Query: 124 NARGTYL 130
N GT
Sbjct: 113 NVAGTLF 119
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 109 bits (274), Expect = 2e-27
Identities = 54/292 (18%), Positives = 99/292 (33%), Gaps = 73/292 (25%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
+ S T+ ITG+S GIG+ A+ A++GAN+ I +++E +L T + + +G
Sbjct: 2 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE---RLEET----RQIILKSG 54
Query: 65 ---GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMN 121
+ D+ E +N+ + +FG ID+LVN
Sbjct: 55 VSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVN---------------------- 92
Query: 122 QINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQ 181
NA T + + Y +
Sbjct: 93 ----------------------NAGAAIPDAF-----------GTTGTDQGIDIYHKTLK 119
Query: 182 INARGTYLVSQKCLPYLKKSNHAHILNISPPLN-LNPFWFKNHVAYTISKYGMSMCALGM 240
+N + +++K P+L S I+N+S + + + Y I+K +
Sbjct: 120 LNLQAVIEMTKKVKPHLVAS-KGEIVNVSSIVAGPQAQP--DFLYYAIAKAALDQYTRST 176
Query: 241 AEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYI 292
A + I VN++ P + T +A+ + MA I
Sbjct: 177 AIDLAKFGIRVNSVSP-GMVET---GFTNAMGMPDQASQKFYNFMASHKECI 224
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 109 bits (274), Expect = 2e-27
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
LSG ITGAS GIGK +AL A+ GA + +AA+ ++ A E+ GG
Sbjct: 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQV-------VADEIAGVGG 81
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 125
LP D+ V+ ++ + GGIDI V NA +S+ + PL+++ + N
Sbjct: 82 KALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNV 141
Query: 126 RGTYLV 131
G +L
Sbjct: 142 TGVFLT 147
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 108 bits (271), Expect = 3e-27
Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 12/131 (9%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
M + +G + +TG RGIG I GA +VI K + +
Sbjct: 1 MATGTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES-----------GGRAL 49
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNAS-AISLTDTANTPLKKYDL 119
E + + D+ E V++ V+ + +FG +D +VNNA T + +
Sbjct: 50 EQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQ 109
Query: 120 MNQINARGTYL 130
+ ++N GTY
Sbjct: 110 LLELNLLGTYT 120
Score = 81.1 bits (201), Expect = 1e-17
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 19/188 (10%)
Query: 134 SQGLEIQSAVNAAVDKFGGIDILVNNAS-AISLTDTANTPLKKYDLMNQINARGTYLVSQ 192
+Q ++++ V+ + +FG +D +VNNA T + + + ++N GTY +++
Sbjct: 64 TQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTK 123
Query: 193 KCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVN 252
LPYL+KS ++NIS + V Y +K ++ +A + + VN
Sbjct: 124 LALPYLRKSQGN-VINISSLVGAIGQA--QAVPYVATKGAVTAMTKALALDESPYGVRVN 180
Query: 253 ALWPRTAIYTAAIEMLTGGSADAKATSR------------KPEIMADAAYYILSSNPPSL 300
+ P I+T E L D +A+ R +P + AA + L+S
Sbjct: 181 CISP-GNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVF-LASEANFC 238
Query: 301 TGQ-FLID 307
TG L+
Sbjct: 239 TGIELLVT 246
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 107 bits (270), Expect = 4e-27
Identities = 73/321 (22%), Positives = 112/321 (34%), Gaps = 87/321 (27%)
Query: 3 NTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED 62
+ L G ITGA G G+ +A + AK GA +VI
Sbjct: 3 GSMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVI------------------------ 38
Query: 63 AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQ 122
VD + G A A++ D
Sbjct: 39 ---------VDRDKA-----GAERVAGEIGD------AALAVA-ADI------------- 64
Query: 123 INARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKYDLMNQ 181
S+ ++ +AV AA+ KFG +DILVNNA + +++D +
Sbjct: 65 -----------SKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVG 113
Query: 182 INARGTYLVSQKCLPYLKK----SNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCA 237
+N RG YL++ K +P+ K+ ILN++ P N Y +K +
Sbjct: 114 VNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRP--NLAWYNATKGWVVSVT 171
Query: 238 LGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSAD---AKATSR-------KPEIMAD 287
+A E I V AL P A T + G ++ K KP+ +A+
Sbjct: 172 KALAIELAPAKIRVVALNP-VAGETPLLTTFMGEDSEEIRKKFRDSIPMGRLLKPDDLAE 230
Query: 288 AAYYILSSNPPSLTGQFLIDD 308
AA ++ S +TG L D
Sbjct: 231 AAAFLCSPQASMITGVALDVD 251
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 107 bits (270), Expect = 5e-27
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
T +L ITGA GIG + A+ GA +V+A A
Sbjct: 6 TAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPET----------DLAGAAASV 55
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA--SAISLTDTANTPLKKYDLMN 121
G + +VD+ +E +V++ ++ +D FG +DI+ NNA S + + +D
Sbjct: 56 GRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTF 115
Query: 122 QINARGTYL 130
+NARGT L
Sbjct: 116 TVNARGTML 124
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 107 bits (270), Expect = 5e-27
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+ K +G +TGA IG A AL+ A++G I + E + A V +
Sbjct: 2 SKKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE-------ALEKAEASVREK 54
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNAS-AISLTDTANTPLKKYDLMNQ 122
G + D+ E AV V++ V FG ID L NNA + + P + +
Sbjct: 55 GVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLT 114
Query: 123 INARGTYLV 131
IN G + V
Sbjct: 115 INVTGAFHV 123
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 107 bits (270), Expect = 6e-27
Identities = 56/318 (17%), Positives = 97/318 (30%), Gaps = 88/318 (27%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
KL+G ITG + G+G+A+ + +GA + + K+AE + GG
Sbjct: 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAE----------RLRELEVAHGG 51
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 125
N + + D+R + A + FG ID L+
Sbjct: 52 NAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIP-------------------------- 85
Query: 126 RGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTD-TANTPLKKYDLMNQINA 184
NA + + L D + +D + +N
Sbjct: 86 ------------------NAGIWDYSTA-----------LADLPEDKIDAAFDDIFHVNV 116
Query: 185 RGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEF 244
+G + CLP L S ++ P YT +K+ + MA E
Sbjct: 117 KGYIHAVKACLPALVSSR-GSVVFTISNAGFYPNG--GGPLYTATKHAVVGLVRQMAFEL 173
Query: 245 KGDNIAVNALWP---RTAIYTAAIEMLTGGSADAKATSR------------KPEIMADAA 289
++ VN + P T + + L+ S + + E A
Sbjct: 174 -APHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAY 232
Query: 290 YYILSSNPPS--LTGQFL 305
+ ++ S TG L
Sbjct: 233 VF-FATRGDSLPATGALL 249
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 108 bits (271), Expect = 6e-27
Identities = 53/292 (18%), Positives = 99/292 (33%), Gaps = 75/292 (25%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
+ SG ++ ITG+S GIG++ A+ AK+GA + I + + +L T +++ AG
Sbjct: 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED---RLEET----KQQILKAG 74
Query: 65 G---NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMN 121
+ D+ + +N + KFG IDILVN
Sbjct: 75 VPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVN---------------------- 112
Query: 122 QINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQ 181
NA + G + P++ Y +
Sbjct: 113 ----------------------NAGANLADGTANT-------------DQPVELYQKTFK 137
Query: 182 INARGTYLVSQKCLPYLKKSNHAHILNISPPLN-LNPFWFKNHVAYTISKYGMSMCALGM 240
+N + ++QK +L K+ I+N+S + + Y +K +
Sbjct: 138 LNFQAVIEMTQKTKEHLIKT-KGEIVNVSSIVAGPQAHS--GYPYYACAKAALDQYTRCT 194
Query: 241 AEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYI 292
A + + VN++ P A+ T + A+ + + I
Sbjct: 195 AIDLIQHGVRVNSVSP-GAVAT---GFMGAMGLPETASDKLYSFIGSRKECI 242
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 107 bits (270), Expect = 7e-27
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
ITGA GIG+A AL A DG + +T + A E+ AG
Sbjct: 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRT-------EVEEVADEIVGAG 76
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAIS--LTDTANTPLKKYDLMNQ 122
G + D+ DE +++AV V KFG +DI+V NA I+ + ++D
Sbjct: 77 GQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANA-GINGVWAPIDDLKPFEWDETIA 135
Query: 123 INARGTYL 130
+N RGT+L
Sbjct: 136 VNLRGTFL 143
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 107 bits (269), Expect = 7e-27
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVI----AAKTAEPHPKLPGTIYSAAKE 59
G+L G +TG+ RGIG A+A+ + GA +V+ + K AE E
Sbjct: 13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAE----------KVVSE 62
Query: 60 VEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDL 119
++ G + + DIR + + AV FG +DI V+N+ +S + +++D
Sbjct: 63 IKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDR 122
Query: 120 MNQINARGTYLV 131
+ +N RG + V
Sbjct: 123 VFSLNTRGQFFV 134
Score = 73.8 bits (182), Expect = 5e-15
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 121 NQINARGT--YLVKA--SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKY 176
++I A G+ +KA Q EI + AV FG +DI V+N+ +S + +++
Sbjct: 61 SEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEF 120
Query: 177 DLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMC 236
D + +N RG + V+++ +L + I+ S + + F H Y+ SK +
Sbjct: 121 DRVFSLNTRGQFFVAREAYRHLTEG--GRIVLTSSNTSKD-FSVPKHSLYSGSKGAVDSF 177
Query: 237 ALGMAEEFKGDNIAVNALWP 256
+++ I VNA+ P
Sbjct: 178 VRIFSKDCGDKKITVNAVAP 197
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 106 bits (267), Expect = 2e-26
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 14/135 (10%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVI----AAKTAEPHPKLPGTIYSA 56
M+ + L+G T F+TG SRGIG AIA + A +GA + + AA+ A+ +
Sbjct: 23 MMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQ----------AV 72
Query: 57 AKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK 116
E+E AGG + D RD A++ A+ V+ GG+DILVN+A T +
Sbjct: 73 VSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVAD 132
Query: 117 YDLMNQINARGTYLV 131
+D + +N R ++
Sbjct: 133 FDEVMAVNFRAPFVA 147
Score = 69.5 bits (171), Expect = 2e-13
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
I+ A+ V+ GG+DILVN+A T + +D + +N R ++ + +
Sbjct: 95 AIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRH 154
Query: 198 LKKSNHAHILNIS---PPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNAL 254
L I+ I L P Y+ SK ++ G+A + I VN +
Sbjct: 155 LGDG--GRIITIGSNLAELVPWP----GISLYSASKAALAGLTKGLARDLGPRGITVNIV 208
Query: 255 WP 256
P
Sbjct: 209 HP 210
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 106 bits (267), Expect = 2e-26
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+L G +TGAS GIG+A AL A++GA +V+ A+ + E+
Sbjct: 3 MSRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNA-------LAELTDEIAGG 55
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAIS--LTDTANTPLKKYDLMN 121
GG D+ DE ++ V AV +FGG+D NNA + + ++ ++ +
Sbjct: 56 GGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNA-GALGAMGEISSLSVEGWRETL 114
Query: 122 QINARGTYL 130
N +L
Sbjct: 115 DTNLTSAFL 123
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 106 bits (266), Expect = 2e-26
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 3 NTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVI----AAKTAEPHPKLPGTIYSAAK 58
+ L G +TGA RGIG+ +A++ + G +++ + ++AE
Sbjct: 23 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAE----------EVVA 72
Query: 59 EVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYD 118
++ G + ++ + AV FG +DI+ +N+ +S + +++D
Sbjct: 73 AIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFD 132
Query: 119 LMNQINARGTYLV 131
+ IN RG + V
Sbjct: 133 RVFTINTRGQFFV 145
Score = 72.3 bits (178), Expect = 2e-14
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 17/184 (9%)
Query: 121 NQINARGT--YLVKA--SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKY 176
I G+ VKA +I AV FG +DI+ +N+ +S + +++
Sbjct: 72 AAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEF 131
Query: 177 DLMNQINARGTYLVSQKCLPYLKKSNHAHILNIS---PPLNLNPFWFKNHVAYTISKYGM 233
D + IN RG + V+++ +L+ ++ + P H Y+ SK +
Sbjct: 132 DRVFTINTRGQFFVAREAYKHLEIG--GRLILMGSITGQAKAVP----KHAVYSGSKGAI 185
Query: 234 SMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYIL 293
A MA + I VN + P I T +M + Y +
Sbjct: 186 ETFARCMAIDMADKKITVNVVAP-GGIKT---DMYHAVCREYIPNGENLSNEEVDEYAAV 241
Query: 294 SSNP 297
+P
Sbjct: 242 QWSP 245
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 105 bits (264), Expect = 2e-26
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 19/133 (14%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
T +L ITG + GIG+AIA + A +GA+I IA P A + +
Sbjct: 2 TQRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP---------EAEAAIRNL 52
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YD 118
G L D+ V++ + FG DILVNNA I P + +
Sbjct: 53 GRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNA-GI----YPLIPFDELTFEQWK 107
Query: 119 LMNQINARGTYLV 131
+IN +L+
Sbjct: 108 KTFEINVDSGFLM 120
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 105 bits (264), Expect = 3e-26
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 2 INTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIA----AKTAEPHPKLPGTIYSAA 57
++ + + TI + GA R IG+A A++ A++GAN+V+ A+ A +A
Sbjct: 1 MSLQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAA----------TAV 50
Query: 58 KEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAIS-LTDTANTPLKK 116
E+E G + L D+ + V++A++AA DKFG I LV+ A + A
Sbjct: 51 AEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAF 110
Query: 117 YDLMNQINARGTYLV 131
+ + +N +L
Sbjct: 111 WHQVLDVNLTSLFLT 125
Score = 66.0 bits (162), Expect = 2e-12
Identities = 45/199 (22%), Positives = 76/199 (38%), Gaps = 21/199 (10%)
Query: 121 NQINARGT--YLVKA--SQGLEIQSAVNAAVDKFGGIDILVNNASAIS-LTDTANTPLKK 175
+I G +KA + E+++A++AA DKFG I LV+ A + A
Sbjct: 51 AEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAF 110
Query: 176 YDLMNQINARGTYLVSQKCLPYLKKSNHAHILNIS--PPLNLNPFWFKNHVAYTISKYGM 233
+ + +N +L ++ LP + K I+ S + +AY SK +
Sbjct: 111 WHQVLDVNLTSLFLTAKTALPKMAKG--GAIVTFSSQAGRDGGGP---GALAYATSKGAV 165
Query: 234 SMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-------KPEIMA 286
G+A+E G I VNA+ P I T + T + E +A
Sbjct: 166 MTFTRGLAKEV-GPKIRVNAVCP-GMISTTFHDTFTKPEVRERVAGATSLKREGSSEDVA 223
Query: 287 DAAYYILSSNPPSLTGQFL 305
++ S + +TG
Sbjct: 224 GLVAFLASDDAAYVTGACY 242
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 105 bits (264), Expect = 3e-26
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+ I ITGAS GIG+ IA + GA I++ A+ + A E+ DAGG
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAI-------ATEIRDAGGT 54
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
L ++D+ D H+V + AAVD +G ID+LVNNA + L+ A + +++ M +N +
Sbjct: 55 ALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIK 114
Query: 127 GT-YLVKA 133
G + + A
Sbjct: 115 GVLWGIGA 122
Score = 68.7 bits (169), Expect = 3e-13
Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 20/167 (11%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+ + AAVD +G ID+LVNNA + L+ A + +++ M +N +G LP
Sbjct: 67 SVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPI 126
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPR 257
++ I+NI L+ Y +K+ + + G+ +E NI V
Sbjct: 127 MEAQRSGQIINIGSIGALSV--VPTAAVYCATKFAVRAISDGLRQE--STNIRV------ 176
Query: 258 TAIYTAAIE-----MLTGGSADAKATSRK-----PEIMADAAYYILS 294
T + +E +T A + + P +A A ++
Sbjct: 177 TCVNPGVVESELAGTITHEETMAAMDTYRAIALQPADIARAVRQVIE 223
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 105 bits (264), Expect = 3e-26
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
M L+G T +TG++RG+G A A A GA +++ A + + +
Sbjct: 1 MTALFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATL-------LAESVDTL 53
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
G + D+ DE A+++A + + +DIL+NNA L+ + +
Sbjct: 54 TRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKV 113
Query: 121 NQINARGTYLV 131
N +LV
Sbjct: 114 IDTNLTSAFLV 124
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 105 bits (264), Expect = 3e-26
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L G ITGA++GIG IA A GA +V++ + E G +
Sbjct: 18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAA------RRALGEQFGTD 71
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
+D+ + A A + FGG+D+LVNNA +T + +D +N R
Sbjct: 72 VHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLR 131
Query: 127 GTYLV 131
L+
Sbjct: 132 APALL 136
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 105 bits (264), Expect = 3e-26
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 6/126 (4%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
TI +TG +RGIG A A GAN+ + ++A + K ++ G
Sbjct: 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVE------VTEKVGKEFGV 64
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 125
D+ + V + G I L+ NA + + + + +N
Sbjct: 65 KTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNV 124
Query: 126 RGTYLV 131
G +
Sbjct: 125 FGVFNT 130
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 104 bits (262), Expect = 4e-26
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L + +TGA GIG+AIA K A + + +V + + +E+ G
Sbjct: 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLED-------RLNQIVQELRGMGKE 57
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNAS-AISLTDTANTPLKKYDLMNQINA 125
L D+ + V+ V + + ID+L NNA +T A + ++ + +N
Sbjct: 58 VLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNL 117
Query: 126 RGTYL 130
+
Sbjct: 118 YSAFY 122
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 104 bits (262), Expect = 4e-26
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+ T+ + GA IG IA K A +G + + E L E+E A
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPL-------VAEIEAA 54
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
GG + +D R+E V + + A D +++ + N A T + + + ++
Sbjct: 55 GGRIVARSLDARNEDEVTAFL-NAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEM 113
Query: 124 NARGTYLV 131
++
Sbjct: 114 ACWAGFVS 121
Score = 79.2 bits (196), Expect = 5e-17
Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 13/191 (6%)
Query: 118 DLMNQINARG----TYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPL 173
L+ +I A G + A E+ + + A D +++ + N A T
Sbjct: 46 PLVAEIEAAGGRIVARSLDARNEDEVTAFL-NAADAHAPLEVTIFNVGANVNFPILETTD 104
Query: 174 KKYDLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGM 233
+ + + ++ ++ ++ + I +L A+ +K+G+
Sbjct: 105 RVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRG--GSGFAAFASAKFGL 162
Query: 234 SMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-----KPEIMADA 288
A MA E NI V L + + TA + A + P +A A
Sbjct: 163 RAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALANPDLLMPPAAVAGA 222
Query: 289 AYYILSSNPPS 299
+ L P S
Sbjct: 223 YWQ-LYQQPKS 232
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 104 bits (261), Expect = 5e-26
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
T +L+G T +TGA++GIGKAIA + A DGA ++++ AE A
Sbjct: 1 TERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAE----------GAKAAAASI 50
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
G DI D +V++ GGIDILVNNA
Sbjct: 51 GKKARAIAADISDPGSVKALFAEIQALTGGIDILVNNA 88
Score = 51.0 bits (123), Expect = 1e-07
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 25/131 (19%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGTYLVSQ 192
+++ GGIDILVNNA +I + + +N GT++V++
Sbjct: 66 SVKALFAEIQALTGGIDILVNNA-SI----VPFVAWDDVDLDHWRKIIDVNLTGTFIVTR 120
Query: 193 KCLPY-LKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----AEEFK 245
+++I+ P N AY +K G+ +G A E
Sbjct: 121 AGTDQMRAAGKAGRVISIASNTFFAGTP----NMAAYVAAKGGV----IGFTRALATELG 172
Query: 246 GDNIAVNALWP 256
NI NA+ P
Sbjct: 173 KYNITANAVTP 183
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 104 bits (262), Expect = 6e-26
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L G +TG SRG+G IA A+ G ++V+A++ E + +A K E G
Sbjct: 19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASE------AAQKLTEKYGVE 72
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
+ D+ + V+ + A +KFG +D +VN A PL ++ + ++N
Sbjct: 73 TMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLF 132
Query: 127 GTYLV 131
GTY V
Sbjct: 133 GTYYV 137
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 104 bits (261), Expect = 6e-26
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
+ +TG+ GIG+A A A++GA +V+A AE + AK++ GG
Sbjct: 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAE-------AAEAVAKQIVADGG 58
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLM 120
+ VD+ D + ++ + + +FGGID LVNNA AI L Y
Sbjct: 59 TAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNA-AIF-GGMKLDFLLTIDPEYYKKF 116
Query: 121 NQINARGTYL 130
+N G
Sbjct: 117 MSVNLDGALW 126
Score = 64.8 bits (159), Expect = 4e-12
Identities = 46/202 (22%), Positives = 71/202 (35%), Gaps = 28/202 (13%)
Query: 122 QINARG----TYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-- 175
QI A G + V S ++ + + +FGGID LVNNA AI L
Sbjct: 52 QIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNA-AIF-GGMKLDFLLTID 109
Query: 176 ---YDLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISK 230
Y +N G ++ + K I+N S + Y ++K
Sbjct: 110 PEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWLYSN-------YYGLAK 162
Query: 231 YGMSMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-------KPE 283
G++ ++ E G NI +NA+ P I T A T P+
Sbjct: 163 VGINGLTQQLSRELGGRNIRINAIAP-GPIDTEANRTTTPKEMVDDIVKGLPLSRMGTPD 221
Query: 284 IMADAAYYILSSNPPSLTGQFL 305
+ ++LS +TGQ
Sbjct: 222 DLVGMCLFLLSDEASWITGQIF 243
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 104 bits (262), Expect = 7e-26
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 3 NTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED 62
N L+G +TGA GIG A+A + A +G +++ A + +A
Sbjct: 23 NHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGD----------AADAAATK 72
Query: 63 AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQ 122
G C VD+ DE + + V+A V FGG+D LV NA + L +T ++ +D +
Sbjct: 73 IGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIA 132
Query: 123 INARGTYL 130
IN RG +L
Sbjct: 133 INLRGAWL 140
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 103 bits (259), Expect = 8e-26
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
ITGASRGIG+AIA A+DG + + A++ + K+ A + +++ G
Sbjct: 4 VAVITGASRGIGEAIARALARDGYALALGARSVDRLEKI------AHELMQEQGVEVFYH 57
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGT-Y 129
+D+ +V+ +++FG +D++V NA +++ M ++N G
Sbjct: 58 HLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWR 117
Query: 130 LVKA 133
+KA
Sbjct: 118 TLKA 121
Score = 75.6 bits (187), Expect = 6e-16
Identities = 22/165 (13%), Positives = 54/165 (32%), Gaps = 24/165 (14%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
++ +++FG +D++V NA +++ M ++N G + + L
Sbjct: 66 SVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDS 125
Query: 198 LKKSNHAHILNIS-----PPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVN 252
LK++ ++ S Y +K+ E ++
Sbjct: 126 LKRTGGLALVTTSDVSARL--------IPYGGGYVSTKWAARALVRTFQIE--NPDVRF- 174
Query: 253 ALWPRTAIYTAAIE---MLTGGSADAKATSRKPEIMADAAYYILS 294
+ A++ + + KP+ +A+A +L
Sbjct: 175 -----FELRPGAVDTYFGGSKPGKPKEKGYLKPDEIAEAVRCLLK 214
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 103 bits (260), Expect = 8e-26
Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 10/127 (7%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
T +L G +TG + G+G + +GA + + + + +
Sbjct: 1 TNRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA----------AGQQLAAEL 50
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
G + D+ E + A + G +++LVNNA + D L+ + + +I
Sbjct: 51 GERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKI 110
Query: 124 NARGTYL 130
N ++
Sbjct: 111 NTESVFI 117
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 104 bits (262), Expect = 8e-26
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 11/129 (8%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
L G +TG+S GIG A+A A+ GA++ I + K A + G
Sbjct: 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEK-------AEHLQKTYGV 83
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTA---NTPLKKYDLMNQ 122
+ +I D +V+ ++ FG ID+ V NA ++ T ++ +
Sbjct: 84 HSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANA-GVTWTQGPEIDVDNYDSWNKIIS 142
Query: 123 INARGTYLV 131
++ G Y
Sbjct: 143 VDLNGVYYC 151
Score = 64.5 bits (158), Expect = 6e-12
Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 21/130 (16%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTA---NTPLKKYDLMNQINARGTYLVSQKC 194
++ ++ FG ID+ V NA ++ T ++ + ++ G Y S
Sbjct: 97 SVEETISQQEKDFGTIDVFVANA-GVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNI 155
Query: 195 LPYLKKSNHAHILNIS--------PPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKG 246
KK+ ++ S P Y +K + A +A E+
Sbjct: 156 GKIFKKNGKGSLIITSSISGKIVNIPQ--------LQAPYNTAKAACTHLAKSLAIEW-A 206
Query: 247 DNIAVNALWP 256
VN + P
Sbjct: 207 PFARVNTISP 216
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 103 bits (260), Expect = 8e-26
Identities = 44/131 (33%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
L G ITGAS GIG+A A A +GA + IAA+ E L E+ A
Sbjct: 2 PSALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRAL-------GDELTAA 54
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
G +D+ D V +AV + V+ GG+DILVNNA + L + + M
Sbjct: 55 GAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDT 114
Query: 124 NARGT-YLVKA 133
N G Y+ +A
Sbjct: 115 NLLGLMYMTRA 125
Score = 62.9 bits (154), Expect = 2e-11
Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 21/169 (12%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+ +AV + V+ GG+DILVNNA + L + + M N G +++ LP+
Sbjct: 70 GVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPH 129
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPR 257
L + + ++ +S +N Y +K+G++ + + +E + V
Sbjct: 130 LLR-SKGTVVQMSSIAGRVN--VRNAAVYQATKFGVNAFSETLRQEVTERGVRV------ 180
Query: 258 TAIYTAAIE-----MLTGGSADAKATSR-------KPEIMADAAYYILS 294
I + +T + R + + +A+A Y ++
Sbjct: 181 VVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIAEAVRYAVT 229
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 103 bits (260), Expect = 9e-26
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
+TGA +GIGKAIAL+ KDG + IA T + A E+ AGG+ +
Sbjct: 4 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA-------TAKAVASEINQAGGHAVAV 56
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYL 130
VD+ D V +AV A GG D++VNNA T + + D + IN +G
Sbjct: 57 KVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIW 116
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 103 bits (260), Expect = 9e-26
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
+ +L G ITGA GIGK IA+ A GA++V++ A+ E+
Sbjct: 3 NSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD-------AANHVVDEI 55
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
+ GG C DI E + + + A+ K G +DILVNNA + P+ +
Sbjct: 56 QQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNA-GGGGPKPFDMPMADFRRA 114
Query: 121 NQINARGTYLV 131
++N + +
Sbjct: 115 YELNVFSFFHL 125
Score = 79.1 bits (196), Expect = 5e-17
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 17/196 (8%)
Query: 122 QINARG----TYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYD 177
+I G + E+ + + A+ K G +DILVNNA + P+ +
Sbjct: 54 EIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNA-GGGGPKPFDMPMADFR 112
Query: 178 LMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCA 237
++N + +SQ P ++K+ IL I+ N N +Y SK S
Sbjct: 113 RAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENK--NINMTSYASSKAAASHLV 170
Query: 238 LGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-------KPEIMADAAY 290
MA + NI VN + P AI T A++ + + K +P+ +A+AA
Sbjct: 171 RNMAFDLGEKNIRVNGIAP-GAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAAL 229
Query: 291 YILSSNPPS-LTGQFL 305
+ L S S ++GQ L
Sbjct: 230 F-LCSPAASWVSGQIL 244
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 104 bits (261), Expect = 9e-26
Identities = 55/318 (17%), Positives = 86/318 (27%), Gaps = 87/318 (27%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
T +L+ ITGA+ GIG A A + +GA + I + + + +
Sbjct: 24 TQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKD----------VLDAAIAEI 73
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
GG + D + + + G ID+L NA S+ ++YD
Sbjct: 74 GGGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDR 133
Query: 124 NARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 183
N +G +Q A+ + V S T T
Sbjct: 134 NVKGVLFT-------VQKALPLLARG-SSV---VLTGSTAGSTGTPA------------- 169
Query: 184 ARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEE 243
Y SK + A +
Sbjct: 170 ---------------------------------------FSVYAASKAALRSFARNWILD 190
Query: 244 FKGDNIAVNALWP---RTAIYTAAIEMLTGGSADAKATSR---------KPEIMADAAYY 291
K I +N L P T + E +A AA +
Sbjct: 191 LKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGRVGRAEEVAAAALF 250
Query: 292 ILSSNPPS-LTGQFLIDD 308
L+S+ S +TG L D
Sbjct: 251 -LASDDSSFVTGAELFVD 267
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 104 bits (261), Expect = 1e-25
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
K +TGA G+G+A+A+ A G + +A + + + + G
Sbjct: 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDA----------LQETAAEIG 73
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKYDLMNQI 123
+ L D+ D +V++ A V+KFG +D+L NNA + + ++ +
Sbjct: 74 DDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDT 133
Query: 124 NARGTYL 130
N G +L
Sbjct: 134 NLTGPFL 140
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 103 bits (260), Expect = 1e-25
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVI----AAKTAEPHPKLPGTIYSAAKE 59
+ L+G TGA RGIG+ IA++ + GA++V+ ++K AE E
Sbjct: 16 SKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAE----------EVVAE 65
Query: 60 VEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDL 119
++ G + DI V + + AV FGG+D +++N+ D + +D
Sbjct: 66 LKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDK 125
Query: 120 MNQINARGTYLV 131
+ +N RG + V
Sbjct: 126 VFNLNTRGQFFV 137
Score = 75.3 bits (186), Expect = 1e-15
Identities = 35/181 (19%), Positives = 73/181 (40%), Gaps = 16/181 (8%)
Query: 118 DLMNQINARGT--YLVKA--SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPL 173
+++ ++ G ++A S+ E+ + + AV FGG+D +++N+ D
Sbjct: 61 EVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQ 120
Query: 174 KKYDLMNQINARGTYLVSQKCLPYLKKSNHAHILNIS---PPLNLNPFWFKNHVAYTISK 230
+ +D + +N RG + V+Q+ L + ++ I+ S + P NH Y SK
Sbjct: 121 ELFDKVFNLNTRGQFFVAQQGLKHCRRG--GRIILTSSIAAVMTGIP----NHALYAGSK 174
Query: 231 YGMSMCALGMAEEFKGDNIAVNALWP---RTAIYTAAIEMLTGGSADAKATSRKPEIMAD 287
+ A + + VN + P +T ++ G + E +A+
Sbjct: 175 AAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLAN 234
Query: 288 A 288
Sbjct: 235 M 235
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 104 bits (261), Expect = 1e-25
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 9/130 (6%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
L G + +TGAS+GIG+ +A AK GA++V+ A++ E L + G
Sbjct: 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE---TL----QKVVSHCLELGA 77
Query: 66 -NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 124
+ + D + V A GG+D+L+ N + + + + ++N
Sbjct: 78 ASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVN 137
Query: 125 ARGT-YLVKA 133
L A
Sbjct: 138 FLSYVVLTVA 147
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 103 bits (259), Expect = 2e-25
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 13/131 (9%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
LS I ITGAS+ +G AL+ + G ++I+ +T ++ E+
Sbjct: 19 FQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH----------ASVTEL 68
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
AG L D E + + ++ + + +V+NAS L +T + M
Sbjct: 69 RQAGAVALYG--DFSCETGIMAFIDLLKTQTSSLRAVVHNAS-EWLAETPGEEADNFTRM 125
Query: 121 NQINARGTYLV 131
++ YL+
Sbjct: 126 FSVHMLAPYLI 136
Score = 91.9 bits (229), Expect = 2e-21
Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 23/196 (11%)
Query: 121 NQINARGTYLVKA--SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDL 178
++ G + S I + ++ + + +V+NAS L +T +
Sbjct: 66 TELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNAS-EWLAETPGEEADNFTR 124
Query: 179 MNQINARGTYLVSQKCLPYLKKSNHAHILNIS--PPLNLNPFWFKNHVAYTISKYGMSMC 236
M ++ YL++ C P L S A I++IS + H+AY +K G+
Sbjct: 125 MFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSS----KHIAYCATKAGLESL 180
Query: 237 ALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-------KPEIMADAA 289
L A F + VN + P + + + A A ++ E++ +
Sbjct: 181 TLSFAARF-APLVKVNGIAP-ALLMF---QPKDDAAYRANALAKSALGIEPGAEVIYQSL 235
Query: 290 YYILSSNPPSLTGQFL 305
Y+L S +TG L
Sbjct: 236 RYLLDS--TYVTGTTL 249
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 102 bits (258), Expect = 2e-25
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 14/130 (10%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED- 62
+ +L G ITG + GIG AIA K ++GA ++I + ++ ++
Sbjct: 1 SNRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD-----------VGEKAAKS 49
Query: 63 --AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
D DE +A FG + LVNNA T ++ +
Sbjct: 50 VGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKL 109
Query: 121 NQINARGTYL 130
+N G +
Sbjct: 110 LAVNLDGVFF 119
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 102 bits (257), Expect = 2e-25
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
LSG T+ ITG +RG+G A +A GA +V+A E A + G
Sbjct: 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE----------EGAATARELGDA 52
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
+D+ E Q V A ++FG +D LVNNA + ++++ + +IN
Sbjct: 53 ARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLT 112
Query: 127 GTYL 130
G ++
Sbjct: 113 GVFI 116
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 103 bits (258), Expect = 2e-25
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
M LSG +TG S+GIG AIA K GA + IA +A V
Sbjct: 4 MAGIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVM----------AAQAVV 53
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
VD+ +V +A+ A+D GG D+L NA ++ + +++D
Sbjct: 54 AGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFN 113
Query: 121 NQINARGTYL 130
+NARG +L
Sbjct: 114 FDVNARGVFL 123
Score = 62.2 bits (152), Expect = 3e-11
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 23/187 (12%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+ +A+ A+D GG D+L NA ++ + +++D +NARG +L +Q +
Sbjct: 72 SVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRH 131
Query: 198 LKKSNHA-HILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNA- 253
SN I+N + P Y+ SK+ + +A E NI VN
Sbjct: 132 FLASNTKGVIVNTASLAAKVGAP----LLAHYSASKFAVFGWTQALAREMAPKNIRVNCV 187
Query: 254 --------LWPRTAIYTAAIEMLTGGSADAKATSR-------KPEIMADAAYYILSSNPP 298
+ R I+ A + +T + A+ S +PE +AD ++ S
Sbjct: 188 CPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFLASDAAR 247
Query: 299 SLTGQFL 305
+TGQ +
Sbjct: 248 FMTGQGI 254
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 102 bits (258), Expect = 2e-25
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
G+LSG TI +TGA+ GIG+A A++GA++V + A+ V
Sbjct: 2 GRLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER----------LLAEAVAALE 51
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+ + D+ D AV++ A+++FG + + + A
Sbjct: 52 AEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFA 88
Score = 53.7 bits (130), Expect = 2e-08
Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 40/193 (20%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGT 187
S +++ A+++FG + + + A + + ++ + ++N G+
Sbjct: 61 VSDPKAVEAVFAEALEEFGRLHGVAHFA-GV----AHSALSWNLPLEAWEKVLRVNLTGS 115
Query: 188 YLVSQKCLPYLKKSNHAHILNISPPLNL-NPFWFKNHVAYTISKYGMSMCALGM----AE 242
+LV++K L++ ++ L Y K G+ +G+ A
Sbjct: 116 FLVARKAGEVLEEGG--SLVLTGSVAGLGAF----GLAHYAAGKLGV----VGLARTLAL 165
Query: 243 EFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR---------KPEIMADAAYYIL 293
E + VN L P I T M G A +PE +A AA + L
Sbjct: 166 ELARKGVRVNVLLP-GLIQT---PMTAGLPPWAWEQEVGASPLGRAGRPEEVAQAALF-L 220
Query: 294 SSNPPS-LTGQFL 305
S + +TGQ L
Sbjct: 221 LSEESAYITGQAL 233
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 102 bits (257), Expect = 3e-25
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
+ L +T ++ GIG AIA + A+DGA++V++++ E + +
Sbjct: 6 VERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQEN-------VDRTVATL 58
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAIS--LTDTANTPLKKYD 118
+ G + + + + V AV+ GG+DILV+NA A++ + + + +D
Sbjct: 59 QGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNA-AVNPFFGNIIDATEEVWD 117
Query: 119 LMNQINARGTYL 130
+ +N + T L
Sbjct: 118 KILHVNVKATVL 129
Score = 76.8 bits (190), Expect = 3e-16
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 16/182 (8%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAIS--LTDTANTPLKKYDLMNQINARGTYLVSQKCL 195
+ + V AV+ GG+DILV+NA A++ + + + +D + +N + T L+++ +
Sbjct: 77 DRERLVAMAVNLHGGVDILVSNA-AVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVV 135
Query: 196 PYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALW 255
P ++K +L +S +P F N Y +SK + +A E NI VN L
Sbjct: 136 PEMEKRGGGSVLIVSSVGAYHP--FPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLA 193
Query: 256 PRTAIYTAAIEMLTGGSADAKATSR--------KPEIMADAAYYILSSNPPS-LTGQFLI 306
P I T ++L A + PE A + L S S +TG+ ++
Sbjct: 194 P-GLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSF-LCSEDASYITGETVV 251
Query: 307 DD 308
Sbjct: 252 VG 253
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 102 bits (257), Expect = 3e-25
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
LSG +TGASRGIG AIA K GA +V+ A+ E + +E+ AG
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAV-------EREIVAAG 77
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
G D+ A+ + + G D+LVNNA
Sbjct: 78 GEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNA 114
Score = 78.8 bits (195), Expect = 7e-17
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 14/174 (8%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK--YDLMNQINARGTYLVSQKCL 195
I + + G D+LVNNA + +K +D + +N + YL+ +
Sbjct: 92 AIAAFATGVLAAHGRCDVLVNNA-GVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFA 150
Query: 196 PYLKKSNHAHILNIS--PPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNA 253
P + + HI+NIS N + AYT SK+G++ AEE + + V+
Sbjct: 151 PAMIAAKRGHIINISSLAGKNPVA----DGAAYTASKWGLNGLMTSAAEELRQHQVRVSL 206
Query: 254 LWPRTAIYTAAIEMLTGGSADAKATSR-KPEIMADAAYYILSSNPPSLTGQFLI 306
+ P ++ T E G SA A +P+ +AD + + S + L+
Sbjct: 207 VAP-GSVRT---EFGVGLSAKKSALGAIEPDDIADVVALLATQADQSFISEVLV 256
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 102 bits (257), Expect = 3e-25
Identities = 59/318 (18%), Positives = 99/318 (31%), Gaps = 90/318 (28%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
+SG ITG+S GIG AIA AK+GA+IV+ A
Sbjct: 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVA------------------------- 38
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAIS--LTDTANTPLKKYDLMNQI 123
R + A + +KFG ++ +
Sbjct: 39 ---------RQVDRLHEAARSLKEKFGV------RVLEVAVDVATPE------------- 70
Query: 124 NARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 183
+ + V + FGG DILVNNA S +K+ ++
Sbjct: 71 --------------GVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELL 116
Query: 184 ARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEE 243
+++ +P ++ I++ + + P W++ Y ++K + M + +A E
Sbjct: 117 VMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYE--PIYNVTKAALMMFSKTLATE 174
Query: 244 FKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR------------------KPEIM 285
DNI VN + P I T PE +
Sbjct: 175 VIKDNIRVNCINP-GLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPEEL 233
Query: 286 ADAAYYILSSNPPSLTGQ 303
A+ ++ S G
Sbjct: 234 ANFFVFLCSERATYSVGS 251
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 102 bits (257), Expect = 3e-25
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L G T +TG++ GIG IA A+ GANIV+ A E+ G
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPA---------PALAEIARHGVK 52
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
+ D+ D +++ A +FGG+DILVNNA + PL+ +D + +N
Sbjct: 53 AVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLS 112
Query: 127 GTYL 130
+
Sbjct: 113 AVFH 116
Score = 72.2 bits (178), Expect = 1e-14
Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 26/188 (13%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+I++ A +FGG+DILVNNA + PL+ +D + +N + ++ LP
Sbjct: 65 QIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPG 124
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGM----AEEFKGDNIAVNA 253
++ N I+NI+ L K AY +K+G+ +G+ E N+ NA
Sbjct: 125 MRARNWGRIINIASVHGLVGSTGK--AAYVAAKHGV----VGLTKVVGLETATSNVTCNA 178
Query: 254 LWP---RTAIYTAAIEMLTGGSADAKATSRK-------------PEIMADAAYYILSSNP 297
+ P T + I+ D PE + + ++ S
Sbjct: 179 ICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSEAG 238
Query: 298 PSLTGQFL 305
+ G
Sbjct: 239 SQVRGAAW 246
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 102 bits (256), Expect = 3e-25
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+ + ITGAS+GIG IA A DG +V+ A++ + + E+ +
Sbjct: 2 SLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQ-------NLEKVHDEIMRS 54
Query: 64 GGNCLPCIV---DIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
+ IV DI D + + K+G +DILVN A A+ + + + P+ + +
Sbjct: 55 NKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAA-AMFMDGSLSEPVDNFRKI 113
Query: 121 NQINARGTYLV 131
+IN Y +
Sbjct: 114 MEINVIAQYGI 124
Score = 78.0 bits (193), Expect = 1e-16
Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 15/185 (8%)
Query: 118 DLMNQINARGTYLVKA-------SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTAN 170
+ ++I ++ + + + + + K+G +DILVN A A+ + + +
Sbjct: 46 KVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAA-AMFMDGSLS 104
Query: 171 TPLKKYDLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISK 230
P+ + + +IN Y + + +K + +I N++ F + Y +K
Sbjct: 105 EPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYG--FADGGIYGSTK 162
Query: 231 YGMSMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-KPEIMADAA 289
+ + A + E I V L P + T +M K +P+ + +
Sbjct: 163 FALLGLAESLYRELAPLGIRVTTLCP-GWVNT---DMAKKAGTPFKDEEMIQPDDLLNTI 218
Query: 290 YYILS 294
+L+
Sbjct: 219 RCLLN 223
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 103 bits (258), Expect = 3e-25
Identities = 48/329 (14%), Positives = 98/329 (29%), Gaps = 94/329 (28%)
Query: 3 NTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED 62
+ ITG +R IG +IA++ + G +V+ + +E AA+ +
Sbjct: 5 SHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSE----------GAAQRLVA 54
Query: 63 A-----GGNCLPCIVDIRDEHAV----QSAVNAAVDKFGGIDILVNNASAISLTDTANTP 113
G+ + C D+ ++ + ++ + FG D+LVNNA
Sbjct: 55 ELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNA------------ 102
Query: 114 LKKYDLMNQINARGTYLVKASQGLEIQSAVNAAVDKFGGI--DILVNNASAISLTDTANT 171
+ + A
Sbjct: 103 --------------------------------------SAYYPTPLLPGDDTNGAADAKP 124
Query: 172 PLKKYDLMNQINARGTYLVSQKCLPYLK-----KSNHAHILNISPPLNLNPFWFKNHVAY 226
+ + NA + + +S + ++N+ + P Y
Sbjct: 125 IDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLP--LPGFCVY 182
Query: 227 TISKYGMSMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSRK----- 281
T++K+ + A E +I VNA+ P + + + R+
Sbjct: 183 TMAKHALGGLTRAAALELAPRHIRVNAVAP------GLSLLPPAMPQETQEEYRRKVPLG 236
Query: 282 -----PEIMADAAYYILSSNPPSLTGQFL 305
+ADA +++S + +TG L
Sbjct: 237 QSEASAAQIADAIAFLVSKDAGYITGTTL 265
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 102 bits (257), Expect = 3e-25
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIA-----AKTAEPHPKLPGTIYSAAKEVEDAGG 65
+TG ++GIG+ I+ K A DG +I +A + A K +E A
Sbjct: 4 VAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAA----------ETIKLIEAADQ 53
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 125
+ +D+ D+ SA++ A +K GG D+LVNNA + + + +N
Sbjct: 54 KAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNV 113
Query: 126 RGTYL 130
+
Sbjct: 114 FSVFF 118
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 102 bits (257), Expect = 3e-25
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L G + ITG+S+GIG A A A+ GA + + + A + + GG+
Sbjct: 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANID------ETIASMRADGGD 58
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMN 121
D+ A Q V+ V KFGGID+L+NNA + PL + YD +
Sbjct: 59 AAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGL----VGRKPLPEIDDTFYDAVM 114
Query: 122 QINARGTYLV 131
N R +
Sbjct: 115 DANIRSVVMT 124
Score = 68.0 bits (167), Expect = 4e-13
Identities = 40/191 (20%), Positives = 66/191 (34%), Gaps = 35/191 (18%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGTYLVSQ 192
Q V+ V KFGGID+L+NNA + PL + YD + N R + ++
Sbjct: 71 ACQQLVDEFVAKFGGIDVLINNAGGL----VGRKPLPEIDDTFYDAVMDANIRSVVMTTK 126
Query: 193 KCLPYLKKSNHAH-----ILNIS--PPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFK 245
LP+L + A +++ Y +K + +
Sbjct: 127 FALPHLAAAAKASGQTSAVISTGSIAGHTGG---GPGAGLYGAAKAFLHNVHKNWVDFHT 183
Query: 246 GDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR---------KPEIMADAAYYILSSN 296
D + N + P + T + D + E MA A + +S+
Sbjct: 184 KDGVRFNIVSP-GTVDT---AFHADKTQDVRDRISNGIPMGRFGTAEEMAPAFLF-FASH 238
Query: 297 PPS--LTGQFL 305
S +TGQ L
Sbjct: 239 LASGYITGQVL 249
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 102 bits (257), Expect = 4e-25
Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVI----AAKTAEPHPKLPGTIYSAAKEVED 62
+ +TGASRGIG AIA + A DG +VI A AE A ++E
Sbjct: 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAE----------EVAGKIEA 74
Query: 63 AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQ 122
AGG L D+ D AV+ A + FGG+D+LVNNA + LT A T +D +
Sbjct: 75 AGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIA 134
Query: 123 INARGTYLV 131
+N +GT+
Sbjct: 135 VNLKGTFNT 143
Score = 69.9 bits (172), Expect = 8e-14
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
++ A + FGG+D+LVNNA + LT A T +D + +N +GT+ ++
Sbjct: 91 AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQR 150
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
L+ I+N+S ++ Y +K G+ +++E +G +I VNA+ P
Sbjct: 151 LRVG--GRIINMSTSQVGLL--HPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAP 205
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 102 bits (256), Expect = 4e-25
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+G+L+G ++G +RG+G + +GA +V E +
Sbjct: 2 SGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE----------EGKAMAAEL 51
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
+D+ ++AV+ AV FGG+ +LVNNA +++ + L ++ + +
Sbjct: 52 ADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDV 111
Query: 124 NARGTYL 130
N G +L
Sbjct: 112 NLTGVFL 118
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 102 bits (256), Expect = 4e-25
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVI----AAKTAEPHPKLPGTIYSA 56
+ + +TG SRGIG A+ AA+ G + + + A+ +
Sbjct: 18 LYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAAD----------AV 67
Query: 57 AKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDT--ANTPL 114
+ ++GG + D+ + + + +A +FG +D LVNNA I +
Sbjct: 68 VAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNA-GIVDYPQRVDEMSV 126
Query: 115 KKYDLMNQINARGTYLV 131
++ + M ++N G+ L
Sbjct: 127 ERIERMLRVNVTGSILC 143
Score = 70.7 bits (174), Expect = 6e-14
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%)
Query: 121 NQINARG--TYLVKA--SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDT--ANTPLK 174
I G + +I + +A +FG +D LVNNA I ++
Sbjct: 69 AAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNA-GIVDYPQRVDEMSVE 127
Query: 175 KYDLMNQINARGTYLVSQKCLPYLKKSNHAH---ILNISPPLNLNPFWFKNHVAYTISKY 231
+ + M ++N G+ L + + + + + I+N+S + +V Y SK
Sbjct: 128 RIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILG-SATQYVDYAASKA 186
Query: 232 GMSMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEM-LTGGSADAKATSRK--------- 281
+ +G+A E + I VNA+ P I T ++ +GG D
Sbjct: 187 AIDTFTIGLAREVAAEGIRVNAVRP-GIIET---DLHASGGLPDRAREMAPSVPMQRAGM 242
Query: 282 PEIMADAAYYILSSNPPSLTGQFL 305
PE +ADA Y+LS + +TG L
Sbjct: 243 PEEVADAILYLLSPSASYVTGSIL 266
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 102 bits (257), Expect = 5e-25
Identities = 43/336 (12%), Positives = 86/336 (25%), Gaps = 97/336 (28%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED--- 62
+ +TGA++ +G++IA +G + + + + A +
Sbjct: 6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA----------AEANALSATLN 55
Query: 63 --AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
+ + D+ + +
Sbjct: 56 ARRPNSAITVQADLSNVATAPVSGADGSAPVTLFT------------------------- 90
Query: 121 NQINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASA---------------ISL 165
V A +G D+LVNNAS+ +
Sbjct: 91 -----------------RCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCV 133
Query: 166 TDTANTPLKKYDLMNQINARGTYLVSQKCLPYL------KKSNHAHILNISPPLNLNPFW 219
D DL NA Y + + + + + I+N+ + P
Sbjct: 134 GDREAMETATADLFG-SNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQP-- 190
Query: 220 FKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATS 279
+ YT++K + A E I VN + P ++
Sbjct: 191 LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGP------GLSVLVDDMPPAVWEGH 244
Query: 280 RK----------PEIMADAAYYILSSNPPSLTGQFL 305
R ++D ++ SS +TG +
Sbjct: 245 RSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCV 280
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 101 bits (255), Expect = 6e-25
Identities = 56/316 (17%), Positives = 89/316 (28%), Gaps = 83/316 (26%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
LS +TG S GIG A + GA + A+ E + E A
Sbjct: 6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGE-----------RLRAAESA--- 51
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
+R + D + D
Sbjct: 52 -------LRQRFPGARLFASVCD----------------VLDAL---------------- 72
Query: 127 GTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARG 186
++++ A G ILVNNA ++ A T + + Q+
Sbjct: 73 -----------QVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFS 121
Query: 187 TYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKG 246
+ LP L+ A I+ ++ L P + VA + ++ G+ MA EF
Sbjct: 122 VIHPVRAFLPQLESRADAAIVCVNSLLASQPEP--HMVATSAARAGVKNLVRSMAFEFAP 179
Query: 247 DNIAVNALWP------RTAIYTAAIEMLTGGSADAKATSR-----------KPEIMADAA 289
+ VN + + A E A A KP A A
Sbjct: 180 KGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAI 239
Query: 290 YYILSSNPPSLTGQFL 305
++ S TG +
Sbjct: 240 LFLASPLSAYTTGSHI 255
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 101 bits (254), Expect = 6e-25
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 15/125 (12%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L+G + +TGA +GIG+ GA +V ++T +
Sbjct: 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA-----------DLDSLVRECPG 53
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
P VD+ D A + A+ G +D+LVNNA+ L + +D ++N R
Sbjct: 54 IEPVCVDLGDWEATE----RALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLR 109
Query: 127 GTYLV 131
V
Sbjct: 110 AVIQV 114
Score = 81.8 bits (203), Expect = 6e-18
Identities = 44/179 (24%), Positives = 66/179 (36%), Gaps = 18/179 (10%)
Query: 142 AVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLKKS 201
A A+ G +D+LVNNA+ L + +D ++N R VSQ L
Sbjct: 66 ATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIAR 125
Query: 202 NHA-HILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPRTAI 260
I+N+S + NH Y +K + M MA E I VNA+ P T +
Sbjct: 126 GVPGAIVNVSSQCSQRAVT--NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNP-TVV 182
Query: 261 YTAAIEMLTGGSADAKATSR-----------KPEIMADAAYYILSSNPPSLTGQFLIDD 308
T M +D + E + +A ++LS TG L +
Sbjct: 183 MT---SMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVE 238
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 101 bits (255), Expect = 7e-25
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
T +TG GIGK +A GA+++I + + + A +E+E G N
Sbjct: 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDK-------LAGAVQELEALGAN 61
Query: 67 ---CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKYDLMNQ 122
DI +E AV+A G + +V+ A + ++ + +
Sbjct: 62 GGAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVD 121
Query: 123 INARGTYLV 131
+N GT V
Sbjct: 122 LNVNGTMYV 130
Score = 77.2 bits (191), Expect = 4e-16
Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 12/180 (6%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLP 196
E AV+A G + +V+ A + ++ + + +N GT V +
Sbjct: 77 ETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAR 136
Query: 197 YLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
+ + + IS N AY ++K + A+E + VN++ P
Sbjct: 137 EMVRGGGGSFVGISSIAASNTHR--WFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRP 194
Query: 257 RTAIYTAAIEMLTGGSADAKATSR--------KPEIMADAAYYILSSNPPSLTGQFLIDD 308
I T + +T + + + + E +A+ A ++LS +TGQ + D
Sbjct: 195 -GLIRTDLVAAITESAELSSDYAMCTPLPRQGEVEDVANMAMFLLSDAASFVTGQVINVD 253
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 101 bits (254), Expect = 7e-25
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
L+ +TGA+ GIG+AIA AK GA++V+ +E + A + AGG
Sbjct: 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEG-------AEAVAAAIRQAGG 61
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 125
+ ++ DE ++ + AA+D+FG I +LVNNA + P+ ++ ++N
Sbjct: 62 KAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNA-GGGGPKPFDMPMSDFEWAFKLNL 120
Query: 126 RGTYLV 131
+ +
Sbjct: 121 FSLFRL 126
Score = 69.1 bits (170), Expect = 2e-13
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
++ + AA+D+FG I +LVNNA + P+ ++ ++N + +SQ P+
Sbjct: 75 HREAVIKAALDQFGKITVLVNNA-GGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPH 133
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPR 257
++K+ ILNIS N +Y SK ++ +A + I VNA+ P
Sbjct: 134 MQKAGGGAILNISSMAGENT--NVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAP- 190
Query: 258 TAIYTAAIEMLTGGSADAKATSR-------KPEIMADAAYYILSSNPPSLTGQFL 305
AI T A+ + + + + +A+AA ++ S ++GQ L
Sbjct: 191 GAIKTDALATVLTPEIERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVL 245
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 100 bits (252), Expect = 9e-25
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
SGL +TGA +GIG+ GA +V +T +
Sbjct: 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS-----------DLVSLAKECPG 53
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
P VD+ D A + A+ G +D+LVNNA+ + + + +D +N R
Sbjct: 54 IEPVCVDLGDWDATE----KALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLR 109
Query: 127 GTYLV 131
+ V
Sbjct: 110 SVFQV 114
Score = 81.4 bits (202), Expect = 6e-18
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 142 AVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY-LKK 200
A A+ G +D+LVNNA+ + + + +D +N R + VSQ + +
Sbjct: 66 ATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINR 125
Query: 201 SNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPRTAI 260
I+N+S + F N + Y+ +K M+M MA E I VN++ P T +
Sbjct: 126 GVPGSIVNVSSMVAHVTFP--NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNP-TVV 182
Query: 261 YTAAIEMLTGGSADAKATSR-----------KPEIMADAAYYILSSNPPSLTGQFLIDD 308
T +M SAD + + + E + ++ ++LS S +G ++ D
Sbjct: 183 LT---DMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVD 238
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 101 bits (255), Expect = 9e-25
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKE---- 59
+G+L +TG GIG+A A+ A++GA++ I AE A++
Sbjct: 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAE---------EEDAQQVKAL 94
Query: 60 VEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+E+ G + D+ DE +S V+ A + GG+DIL A
Sbjct: 95 IEECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVA 136
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 102 bits (256), Expect = 9e-25
Identities = 43/336 (12%), Positives = 86/336 (25%), Gaps = 97/336 (28%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED--- 62
+ +TGA++ +G++IA +G + + + + A +
Sbjct: 43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA----------AEANALSATLN 92
Query: 63 --AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
+ + D+ + +
Sbjct: 93 ARRPNSAITVQADLSNVATAPVSGADGSAPVTLFT------------------------- 127
Query: 121 NQINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASA---------------ISL 165
V A +G D+LVNNAS+ +
Sbjct: 128 -----------------RCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCV 170
Query: 166 TDTANTPLKKYDLMNQINARGTYLVSQKCLPYL------KKSNHAHILNISPPLNLNPFW 219
D DL NA Y + + + + + I+N+ + P
Sbjct: 171 GDREAMETATADLFG-SNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQP-- 227
Query: 220 FKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATS 279
+ YT++K + A E I VN + P ++
Sbjct: 228 LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGP------GLSVLVDDMPPAVWEGH 281
Query: 280 RK----------PEIMADAAYYILSSNPPSLTGQFL 305
R ++D ++ SS +TG +
Sbjct: 282 RSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCV 317
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 101 bits (254), Expect = 1e-24
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED-AG 64
+ T ITG++ GIG AIA AK GANIV+ A + + EV +
Sbjct: 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIR------TVTDEVAGLSS 75
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 124
G L D+ + + D+FGG DILVNNA + + P++++D + +N
Sbjct: 76 GTVLHHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVN 135
Query: 125 ARGTYL 130
++
Sbjct: 136 LSSSFH 141
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 100 bits (251), Expect = 1e-24
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 11 TIFITGASRGIGKAIALKAAKDGAN-------IVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+ ITGA +GIG+AIAL+ A+ + +V++++TA K+ + E
Sbjct: 4 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKI-------SLECRAE 56
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
G DI D V+ V+++G ID LVNNA ++ + +D
Sbjct: 57 GALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNT 116
Query: 124 NARGTYLV 131
N +GT+ +
Sbjct: 117 NLKGTFFL 124
Score = 90.0 bits (224), Expect = 6e-21
Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 10/171 (5%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+++ V+++G ID LVNNA ++ + +D N +GT+ ++Q
Sbjct: 72 DVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFAL 131
Query: 198 LKKSNHAHILNIS--PPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALW 255
+++ + HI I+ + Y +SK+G M + N+ + +
Sbjct: 132 MERQHSGHIFFITSVAATKAFR----HSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQ 187
Query: 256 PRTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPSLTGQFLI 306
P A+YT M + +A PE +A ++ + ++
Sbjct: 188 P-GAVYT---PMWGKVDDEMQALMMMPEDIAAPVVQAYLQPSRTVVEEIIL 234
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 100 bits (251), Expect = 2e-24
Identities = 63/317 (19%), Positives = 112/317 (35%), Gaps = 86/317 (27%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVI----AAKTAEPHPKLPGTIYSAAKE 59
L G +TGASRGIG+AIA + A DGA + I + AE E
Sbjct: 2 NSMLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAE----------ETVYE 51
Query: 60 VEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDL 119
++ GG+ ++ H V++ ++ ++
Sbjct: 52 IQSNGGSAFSIGANLESLHGVEALYSSLDNEL---------------------------- 83
Query: 120 MNQINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 179
DIL+NNA T + +D M
Sbjct: 84 -------------------------QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRM 118
Query: 180 NQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALG 239
+NA+ + + Q+ L L+ + + I+NIS + +AY+++K ++
Sbjct: 119 VSVNAKAPFFIIQQALSRLRDN--SRIINISSAATRIS--LPDFIAYSMTKGAINTMTFT 174
Query: 240 MAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-----------KPEIMADA 288
+A++ I VNA+ P + T +M +D + E +AD
Sbjct: 175 LAKQLGARGITVNAILP-GFVKT---DMNAELLSDPMMKQYATTISAFNRLGEVEDIADT 230
Query: 289 AYYILSSNPPSLTGQFL 305
A ++ S + +TGQ +
Sbjct: 231 AAFLASPDSRWVTGQLI 247
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 100 bits (251), Expect = 2e-24
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L+ I +TGAS GIG+ A+ A+ GA +++ + E KL A + + G
Sbjct: 10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEE---KL----RQVASHINEETGR 62
Query: 67 ---CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAI-SLTDTANTPLKKYDLMNQ 122
+ Q + +D +++NA + + + + + + Q
Sbjct: 63 QPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQ 122
Query: 123 INARGTYL 130
+N T++
Sbjct: 123 VNVNATFM 130
Score = 79.9 bits (198), Expect = 3e-17
Identities = 31/181 (17%), Positives = 67/181 (37%), Gaps = 17/181 (9%)
Query: 131 VKASQGLEIQSAVNAAVDKFGGIDILVNNASAI-SLTDTANTPLKKYDLMNQINARGTYL 189
+ Q + +D +++NA + + + + + + Q+N T++
Sbjct: 71 LLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFM 130
Query: 190 VSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGMAEEFKGD 247
++Q LP L KS+ ++ S + W AY SK+ +A+E+
Sbjct: 131 LTQALLPLLLKSDAGSLVFTSSSVGRQGRANW----GAYAASKFATEGMMQVLADEY-QQ 185
Query: 248 NIAVNALWP---RTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPSLTGQF 304
+ VN + P RTA+ +A + + P + +++ + TG
Sbjct: 186 RLRVNCINPGGTRTAMRASAFP------TEDPQKLKTPADIMPLYLWLMGDDSRRKTGMT 239
Query: 305 L 305
Sbjct: 240 F 240
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 100 bits (251), Expect = 2e-24
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
T + + + ITG G+G+A A++ A +GA + + ++E + ++ V +
Sbjct: 8 TTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE-------GLEASKAAVLET 60
Query: 64 G--GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNAS-AISLTDTANTPLKKYDLM 120
L + D+ DE V++ V A ++FG ID NNA T + ++D +
Sbjct: 61 APDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKV 120
Query: 121 NQINARGTYL 130
IN RG +L
Sbjct: 121 VSINLRGVFL 130
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 100 bits (252), Expect = 2e-24
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
+ + ITG+S GIG+A A+ A++GA + I + AE + +++ AG
Sbjct: 2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE-------RLEETRQQILAAG 54
Query: 65 G---NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK----- 116
N + D+ + ++ + KFG +DILVNNA ++ D+ +
Sbjct: 55 VSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNA-GAAIPDSQSKTGTAQSIES 113
Query: 117 YDLMNQINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNAS 161
YD +N R + + AV G I VN +S
Sbjct: 114 YDATLNLNLRSVIAL-------TKKAVPHLSSTKGEI---VNISS 148
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 100 bits (252), Expect = 2e-24
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+ + +TG RGIG IA A G +I I E+
Sbjct: 24 MTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVA------PVIAELSGL 77
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
G + D+ D + Q+ V+A V +FG ID LVNNA
Sbjct: 78 GARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNA 115
Score = 62.2 bits (152), Expect = 4e-11
Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 31/210 (14%)
Query: 118 DLMNQINARG----TYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPL 173
++ +++ G + Q+ V+A V +FG ID LVNNA +
Sbjct: 69 PVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNA---GIASIVRDDF 125
Query: 174 KK-----YDLMNQINARGTYLVSQKCLPYLKKSNHAH---ILNISPPLNLNPFWFKNHVA 225
+D + +N RGT +Q L + S+ I+NI+ + +
Sbjct: 126 LDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMT--SPERLD 183
Query: 226 YTISKYGMSMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR----- 280
Y +SK G++ + G+A IAV + P I + +M S
Sbjct: 184 YCMSKAGLAAFSQGLALRLAETGIAVFEVRP-GIIRS---DMTAAVSGKYDGLIESGLVP 239
Query: 281 -----KPEIMADAAYYILSSNPPSLTGQFL 305
+PE + + + TG +
Sbjct: 240 MRRWGEPEDIGNIVAGLAGGQFGFATGSVI 269
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 100 bits (251), Expect = 2e-24
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L G T +TG S+GIG AI + A GA + ++ + + + + G N
Sbjct: 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK-------ELDECLEIWREKGLN 71
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGG-IDILVNNASAISLTDTANTPLKKYDLMNQINA 125
+ D+ + F G ++ILVNNA + + + K Y+++ N
Sbjct: 72 VEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNF 131
Query: 126 RGTYLV 131
Y +
Sbjct: 132 EAAYHL 137
Score = 80.3 bits (199), Expect = 2e-17
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 138 EIQSAVNAAVDKFGG-IDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLP 196
E + F G ++ILVNNA + + + K Y+++ N Y +SQ P
Sbjct: 84 ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYP 143
Query: 197 YLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
LK S + +++ +S + + Y+ SK ++ +A E+ DNI VN++ P
Sbjct: 144 LLKASQNGNVIFLSSIAGFSA--LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAP 201
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 99.9 bits (250), Expect = 2e-24
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
L G + ITG+S G+GK++A++ A + A +V+ ++ E S +E++
Sbjct: 2 YKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEAN------SVLEEIKKV 55
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
GG + D+ E V + V +A+ +FG +D+++NNA + + L ++ +
Sbjct: 56 GGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDT 115
Query: 124 NARGTYL 130
N G +L
Sbjct: 116 NLTGAFL 122
Score = 71.4 bits (176), Expect = 2e-14
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 24/202 (11%)
Query: 121 NQINARG--TYLVKA--SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKY 176
+I G VK + ++ + V +A+ +FG +D+++NNA + + L +
Sbjct: 50 EEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDW 109
Query: 177 DLMNQINARGTYLVSQKCLPYLKKSNHA-HILNISPPLNLNPFWFKNHVAYTISKYGMSM 235
+ + N G +L S++ + Y +++ ++N+S P + V Y SK GM +
Sbjct: 110 NKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIP--WPLFVHYAASKGGMKL 167
Query: 236 CALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-----------KPEI 284
+A E+ I VN + P AI T + AD + + +PE
Sbjct: 168 MTETLALEYAPKGIRVNNIGP-GAINT---PINAEKFADPEQRADVESMIPMGYIGEPEE 223
Query: 285 MADAAYYILSSNPPS-LTGQFL 305
+A A + L+S+ S +TG L
Sbjct: 224 IAAVAAW-LASSEASYVTGITL 244
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 99.5 bits (249), Expect = 3e-24
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
G +G + +TG +RGIG+AIA A++GA + + E + E G
Sbjct: 2 GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE-----------GKEVAEAIG 50
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 124
G D+ DE V A G +D+LVNNA+ + L ++ + ++N
Sbjct: 51 GAFFQV--DLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVN 108
Query: 125 ARGTYL 130
Sbjct: 109 LTAPMH 114
Score = 74.8 bits (185), Expect = 2e-15
Identities = 47/184 (25%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
E V A G +D+LVNNA+ + L ++ + ++N +S
Sbjct: 63 ERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAARE 122
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPR 257
++K I+N++ L + AY SK G+ +A + I VNA+ P
Sbjct: 123 MRKVGGGAIVNVASVQGLFAEQ--ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAP- 179
Query: 258 TAIYTAAIEMLTGGSADAKATSR------------KPEIMADAAYYILSSNPPS-LTGQ- 303
AI T A+ S D + T R KPE +A+A + L+S S +TG
Sbjct: 180 GAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLF-LASEKASFITGAI 238
Query: 304 FLID 307
+D
Sbjct: 239 LPVD 242
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 99.5 bits (249), Expect = 3e-24
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 8/126 (6%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L G T +TG SRGIG I + A GA++ ++ + + + G
Sbjct: 7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKE-------LNDCLTQWRSKGFK 59
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGG-IDILVNNASAISLTDTANTPLKKYDLMNQINA 125
+ D+ Q +N + F G ++ILVNNA + + + ++ Y L+ IN
Sbjct: 60 VEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINF 119
Query: 126 RGTYLV 131
Y +
Sbjct: 120 EAAYHL 125
Score = 79.4 bits (197), Expect = 4e-17
Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Query: 138 EIQSAVNAAVDKFGG-IDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLP 196
E Q +N + F G ++ILVNNA + + + ++ Y L+ IN Y +S P
Sbjct: 72 ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHP 131
Query: 197 YLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
+LK S +++ IS Y +K M +A E+ DNI VN + P
Sbjct: 132 FLKASERGNVVFISSVSGALA--VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGP 189
Query: 257 ---RTAIYTAAIEMLTGGSADAKATSR-------KPEIMADAAYYILSSNPPS-LTGQFL 305
T++ I+ K R +P+ +A + L S +TGQ +
Sbjct: 190 GVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAF-LCFPAASYVTGQII 248
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 98.8 bits (247), Expect = 4e-24
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
M + ITGASRGIG+A A G + + A+ + +L + +
Sbjct: 1 MEGMKG----AVLITGASRGIGEATARLLHAKGYRVGLMARDEK---RL--------QAL 45
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
LP D+R+E AV A + FG + LVNNA + L+++ L+
Sbjct: 46 AAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLV 105
Query: 121 NQINARGT-YLVKA 133
N G ++
Sbjct: 106 LDTNLTGAFLGIRH 119
Score = 79.9 bits (198), Expect = 2e-17
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+ AV A + FG + LVNNA + L+++ L+ N G +L + +P
Sbjct: 64 DWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPA 123
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP- 256
L + I+N+ NP FK AY SK+G+ A + + N+ V + P
Sbjct: 124 LLRRGGGTIVNVGSLAGKNP--FKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPG 181
Query: 257 --RTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILS 294
T A PE +A A + L
Sbjct: 182 SVDT-------GFAGNTPGQAWKLK--PEDVAQAVLFALE 212
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 99 bits (250), Expect = 4e-24
Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L G +TGAS GIG AIA AK GA IV E + + AG N
Sbjct: 32 LKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDR-------GMAAYKAAGIN 84
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
+ D+ DE +Q+ V + G IDILVNNA I ++ + I+
Sbjct: 85 AHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLN 144
Query: 127 GTYLV 131
++V
Sbjct: 145 APFIV 149
Score = 69.2 bits (170), Expect = 2e-13
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 20/170 (11%)
Query: 93 GIDILVNNASAISLTDTANTPLKKYDLMNQINARG----TYLVKASQGLEIQSAVNAAVD 148
G I+ N+ + + A G Y+ + IQ+ V
Sbjct: 58 GATIVFNDINQELVDRGMA----------AYKAAGINAHGYVCDVTDEDGIQAMVAQIES 107
Query: 149 KFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLKKSNHAHILN 208
+ G IDILVNNA I ++ + I+ ++VS+ +P + K H I+N
Sbjct: 108 EVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIIN 167
Query: 209 ISPPLNL--NPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
I ++ AY +K G+ M +A E+ NI N + P
Sbjct: 168 ICSMMSELGRE----TVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGP 213
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 99.2 bits (248), Expect = 4e-24
Identities = 67/324 (20%), Positives = 105/324 (32%), Gaps = 93/324 (28%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L G +TG++ GIG IA A GA+IV+
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLN--------------------------- 34
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
D ++ + G DL
Sbjct: 35 ------GFGDAAEIEKVRAGLAAQHGV------KVLYDGA-----------DL------- 64
Query: 127 GTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARG 186
S+G ++ V+ AV + G IDILVNNA + P +K+D + +N
Sbjct: 65 -------SKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSA 117
Query: 187 TYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGM----AE 242
+ + LP++KK I+NI+ L K AY +K+G+ +G A
Sbjct: 118 VFHGTAAALPHMKKQGFGRIINIASAHGLVASANK--SAYVAAKHGV----VGFTKVTAL 171
Query: 243 EFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR------------------KPEI 284
E G I NA+ P + T +E A+ + PE
Sbjct: 172 ETAGQGITANAICPGW-VRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQ 230
Query: 285 MADAAYYILSSNPPSLTGQFLIDD 308
+ A ++ S +TG + D
Sbjct: 231 LGGTAVFLASDAAAQITGTTVSVD 254
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 99.5 bits (249), Expect = 6e-24
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 22/106 (20%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVI--------AAKTAEPHPKLPGTIYS 55
+ KL G + ITG GIG+A+++ AK+GANI I A +T +
Sbjct: 42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQ----------- 90
Query: 56 AAKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
VE G C+ D+ DE + V V + G ++ILVNN
Sbjct: 91 ---YVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNV 133
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 98.3 bits (246), Expect = 8e-24
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 13 FITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPCIV 72
+TGAS G G AIA + G + +AE + A L
Sbjct: 6 IVTGASSGNGLAIATRFLARGDRVAALDLSAETLEET------ARTHWHAYADKVLRVRA 59
Query: 73 DIRDEHAVQSAVNAAVDKFGGIDILVNNA---SAISLTDTANTPLKKYDLMNQINARGTY 129
D+ DE V +A+ A +++FG ID+LVNNA TP++++D + +N RG +
Sbjct: 60 DVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIF 119
Query: 130 L 130
L
Sbjct: 120 L 120
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 98.8 bits (247), Expect = 9e-24
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
M L+G T +TGA GIG+AIA A+ GA+++ +T A E+
Sbjct: 23 MTGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVK--------EVADEI 74
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
D GG+ + D+ D + + +D+LVNNA I+ L ++ +
Sbjct: 75 ADGGGSAEAVVADLADLEGAANVA-EELAATRRVDVLVNNAGIIARAPAEEVSLGRWREV 133
Query: 121 NQINARGTYLV 131
+N +++
Sbjct: 134 LTVNLDAAWVL 144
Score = 70.3 bits (173), Expect = 8e-14
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 142 AVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLKKS 201
V + +D+LVNNA I+ L ++ + +N +++S+ +
Sbjct: 96 NVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAH 155
Query: 202 NHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
I+ I+ L+ +N AY SK+ + +A E+ G + VNAL P
Sbjct: 156 GSGRIVTIASMLSF--QGGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAP 208
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 98.1 bits (245), Expect = 9e-24
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 14/129 (10%)
Query: 9 GLTIFITGASRGIGKAIALKAAKDGANIVI--AAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
G I +TG SRGIGK+I + V+ A++ P K E G
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAP----------LKKLKEKYGDR 51
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDT-ANTPLKKYDLMNQINA 125
+ DI ++ ++ VNAAV G ID LV NA + + + + IN
Sbjct: 52 FFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINF 111
Query: 126 RGT-YLVKA 133
LV
Sbjct: 112 FSIVSLVGI 120
Score = 89.6 bits (223), Expect = 1e-20
Identities = 48/228 (21%), Positives = 80/228 (35%), Gaps = 27/228 (11%)
Query: 106 LTDTANTPLKKYDLMNQINARGTYLV-KASQGLEIQSAVNAAVDKFGGIDILVNNASAIS 164
+ A + L + R Y+V ++ ++ VNAAV G ID LV NA +
Sbjct: 31 VYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLE 90
Query: 165 LTDT-ANTPLKKYDLMNQINARGTYLVSQKCLPYLKKSNHAHILNIS--PPLNLNPFWFK 221
+ + + IN + LP LKK+ + +++ +S W
Sbjct: 91 PVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKT-NGNVVFVSSDACNMYFSSW-- 147
Query: 222 NHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP---RTAIYTAAIEMLTGGSADAKAT 278
AY SK ++ A+ +A E + A+ P T + E + S A+
Sbjct: 148 --GAYGSSKAALNHFAMTLANE--ERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQL 203
Query: 279 SR-----------KPEIMADA-AYYILSSNPPSLTGQFL-IDDEVLKA 313
+ A A L P + GQ+L +D L
Sbjct: 204 KMFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPALAD 251
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 98.9 bits (247), Expect = 1e-23
Identities = 58/325 (17%), Positives = 104/325 (32%), Gaps = 92/325 (28%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA-- 63
+ +TGA++ IG+AIA+K + G +VI + AA + D
Sbjct: 20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSA----------EAAVSLADELN 69
Query: 64 ---GGNCLPCIVDIRDEH----AVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK 116
+ C D+ + + + + +N+ FG D+LVNNASA TPL +
Sbjct: 70 KERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASA-----FYPTPLVQ 124
Query: 117 YDLMNQINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKY 176
D + N + +
Sbjct: 125 GDHEDNSNGKTV--------------------------------------------ETQV 140
Query: 177 DLMNQINARGTYLVSQKCLPYLK------KSNHAHILNISPPLNLNPFWFKNHVAYTISK 230
+ NA +L++ K S++ I+N+ + P Y + K
Sbjct: 141 AELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQP--CMAFSLYNMGK 198
Query: 231 YGMSMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSRK--------- 281
+ + A E I VN + P + + K R+
Sbjct: 199 HALVGLTQSAALELAPYGIRVNGVAP------GVSLLPVAMGEEEKDKWRRKVPLGRREA 252
Query: 282 -PEIMADAAYYILSSNPPSLTGQFL 305
E +ADA +++S + +TG +
Sbjct: 253 SAEQIADAVIFLVSGSAQYITGSII 277
>1pz4_A Sterol carrier protein 2; alpha and beta, lipid binding protein;
HET: PLM; 1.35A {Aedes aegypti} SCOP: d.106.1.1 PDB:
2ksh_A 2ksi_A*
Length = 116
Score = 93.9 bits (233), Expect = 1e-23
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 320 QYSYVPNGAAEGSWHIDLKTGSGSSGRGKPSSTVDATLTMTEKNFIALFEGKLKPTSAFM 379
++ G +W +DLK +ATLTM + A+ G L A
Sbjct: 37 KFRITQGGKVVKNWVMDLKNVKLVESDDAA----EATLTMEDDIMFAIGTGALPAKEAMA 92
Query: 380 TGKLKISGNLQKAMKLEKLMGALK 403
K+++ G ++ LE + +LK
Sbjct: 93 QDKMEVDGQVELIFLLEPFIASLK 116
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 97.6 bits (244), Expect = 1e-23
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
+ +TG GIGK I L + G + + + + N
Sbjct: 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEK-----------RSADFAKERPNLFYF 52
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
D+ D ++ V A++K ID+LVNNA
Sbjct: 53 HGDVADPLTLKKFVEYAMEKLQRIDVLVNNA 83
Score = 57.1 bits (139), Expect = 2e-09
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 26/135 (19%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGT 187
+ L ++ V A++K ID+LVNNA + L +D + + +
Sbjct: 56 VADPLTLKKFVEYAMEKLQRIDVLVNNA-CR----GSKGILSSLLYEEFDYILSVGLKAP 110
Query: 188 YLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----A 241
Y +S+ C L K N I+NI+ P + AY +K G+ + + A
Sbjct: 111 YELSRLCRDELIK-NKGRIINIASTRAFQSEP----DSEAYASAKGGI----VALTHALA 161
Query: 242 EEFKGDNIAVNALWP 256
G ++ VN + P
Sbjct: 162 MSL-GPDVLVNCIAP 175
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 97.6 bits (244), Expect = 1e-23
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
M L G +TGASRGIGKAIA A+ GA ++ A + A
Sbjct: 1 MSQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSES----------GAQAIS 50
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+ G N +++ + ++++ + A D+FGG+DILVNNA
Sbjct: 51 DYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNA 91
Score = 41.3 bits (98), Expect = 2e-04
Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 26/136 (19%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNAS------AISLTDTANTPLKKYDLMNQINARG 186
+ I++ + A D+FGG+DILVNNA + + + +++ + + N
Sbjct: 64 VTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKE------EEWSDIMETNLTS 117
Query: 187 TYLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM---- 240
+ +S+ L + K I+N+ + N Y +K G+ +G
Sbjct: 118 IFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNA----GQANYAAAKAGV----IGFTKSM 169
Query: 241 AEEFKGDNIAVNALWP 256
A E + VN + P
Sbjct: 170 AREVASRGVTVNTVAP 185
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 98.0 bits (245), Expect = 1e-23
Identities = 59/296 (19%), Positives = 96/296 (32%), Gaps = 72/296 (24%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L+G +TG SRGIG+ IA + GA + I A+ AE A + A G+
Sbjct: 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEA-------CADTATRLS-AYGD 78
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
C D+ E + A + +DILVNNA + P+ ++ + Q+N
Sbjct: 79 CQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVT 138
Query: 127 GTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARG 186
+ Q L +A+ + + +N S +
Sbjct: 139 SVFSC--IQQLLPLLRRSASAENPARV---INIGSVAGI---------------SAMGEQ 178
Query: 187 TYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKG 246
Y AY SK + + +A+E G
Sbjct: 179 AY------------------------------------AYGPSKAALHQLSRMLAKELVG 202
Query: 247 DNIAVNALWP---RTAIYTAAIEMLTGGSADAKATSRK----PEIMADAAYYILSS 295
++I VN + P + + AD+ + PE MA A L+
Sbjct: 203 EHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGRWGRPEEMAALAIS-LAG 257
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 98.6 bits (246), Expect = 2e-23
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 7/123 (5%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
G +TG + GIG A A + A+ GA +V++ + A + G
Sbjct: 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQP-------ALEQAVNGLRGQG 79
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 124
+ + D+R + + A GG+D++ +NA + A + + I+
Sbjct: 80 FDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDID 139
Query: 125 ARG 127
G
Sbjct: 140 LWG 142
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 97.2 bits (243), Expect = 2e-23
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIA----AKTAEPHPKLPGTIYSAAKEVED 62
+TG+SRG+GKA A++ A++G NIVI K A A+E+E
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAAL----------ETAEEIEK 51
Query: 63 AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQ 122
G L ++ ++ + FG +D+ VNNA++ L +D
Sbjct: 52 LGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMN 111
Query: 123 INARGTYLV 131
INA+
Sbjct: 112 INAKALLFC 120
Score = 73.7 bits (182), Expect = 5e-15
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 17/201 (8%)
Query: 121 NQINARG--TYLVKA--SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKY 176
+I G +VKA Q +I+ + FG +D+ VNNA++ L +
Sbjct: 47 EEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHW 106
Query: 177 DLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMC 236
D INA+ +Q+ ++K+ HI++IS ++ +N+ +SK +
Sbjct: 107 DWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRY--LENYTTVGVSKAALEAL 164
Query: 237 ALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSRK---------PEIMAD 287
+A E I VNA+ AI T A++ D +R+ + M D
Sbjct: 165 TRYLAVELSPKQIIVNAVSG-GAIDTDALKHF-PNREDLLEDARQNTPAGRMVEIKDMVD 222
Query: 288 AAYYILSSNPPSLTGQFLIDD 308
+++SS + GQ +I D
Sbjct: 223 TVEFLVSSKADMIRGQTIIVD 243
>2qzt_A Sterol carrier protein 2-like 2; mosquito, fatty acid, palmitic
acid, cholesterol, lipid transport; HET: PLM; 1.70A
{Aedes aegypti} PDB: 3bdq_A*
Length = 111
Score = 93.0 bits (231), Expect = 2e-23
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 324 VPNGAAEGSWHIDLKTGSGSSGRGKPSSTVDATLTMTEKNFIALFEGKLKPTSAFMTGKL 383
+ + W +DLK G D T+T+ ++ +A+ L A GK+
Sbjct: 39 IKTASGVEQWIVDLKQLKVDQGVFAS---PDVTVTVGLEDMLAISGKTLTVGDALKQGKI 95
Query: 384 KISGNLQKAMKLEKLM 399
++SG+ A KL +++
Sbjct: 96 ELSGDADLAAKLAEVI 111
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 97.3 bits (243), Expect = 3e-23
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
+TGA+ GIG IA + K+G + + A+ E KE+ +AG
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTT-------LKELREAG 70
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
D+R +++ V A V+++G +D+LVNNA
Sbjct: 71 VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNA 107
Score = 46.5 bits (111), Expect = 5e-06
Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 32/196 (16%)
Query: 134 SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQK 193
EI++ V A V+++G +D+LVNNA TA + + + + N G + V+++
Sbjct: 81 RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQ 140
Query: 194 CLPYLK--KSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----AEEFK 245
L + I+NI+ + Y+ SK+G+ +G E
Sbjct: 141 VLKAGGMLERGTGRIVNIASTGGKQGVV----HAAPYSASKHGV----VGFTKALGLELA 192
Query: 246 GDNIAVNALWP---RT----AIYTAAIEMLTGGSADAKATSR---------KPEIMADAA 289
I VNA+ P T ++ ++ + +A +P +A+
Sbjct: 193 RTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMV 252
Query: 290 YYILSSNPPSLTGQFL 305
Y++ ++T Q L
Sbjct: 253 AYLIGPGAAAVTAQAL 268
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 97.3 bits (243), Expect = 3e-23
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
+TGA RGIG+ IA AK ++++ ++T + + E++ G
Sbjct: 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSV-------VDEIKSFGY 93
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
D+ + + +N + + +DILVNNA
Sbjct: 94 ESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNA 129
Score = 43.3 bits (103), Expect = 8e-05
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 28/154 (18%)
Query: 118 DLMNQINARG----TYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPL 173
++++I + G Y S+ EI +N + + +DILVNNA I T +
Sbjct: 83 SVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNA-GI----TRDNLF 137
Query: 174 KK-----YDLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAY 226
+ ++ + + N + ++Q + + + I+NIS + L N Y
Sbjct: 138 LRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNV----GQANY 193
Query: 227 TISKYGMSMCALGM----AEEFKGDNIAVNALWP 256
+ SK G+ +G A+E NI VNA+ P
Sbjct: 194 SSSKAGV----IGFTKSLAKELASRNITVNAIAP 223
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 97.7 bits (244), Expect = 3e-23
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
LS ++ +TG ++GIG+ IA A+ GAN+ +AA++ + A+ E G
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSV------TAELGELGAG 91
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
N + +D+ D + A VD FG +D++ NA
Sbjct: 92 NVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANA 127
Score = 58.8 bits (143), Expect = 7e-10
Identities = 44/195 (22%), Positives = 64/195 (32%), Gaps = 40/195 (20%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGT 187
S A VD FG +D++ NA I L + +N +GT
Sbjct: 100 VSDPGSCADAARTVVDAFGALDVVCANA-GI----FPEARLDTMTPEQLSEVLDVNVKGT 154
Query: 188 YLVSQKCLPYLKKSNHAHILNISP---PLNLNPFWFKNHVAYTISKYGMSMCALGM---- 240
Q CL L S ++ S P+ P W Y SK LG
Sbjct: 155 VYTVQACLAPLTASGRGRVILTSSITGPVTGYPGW----SHYGASKAAQ----LGFMRTA 206
Query: 241 AEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR---------KPEIMADAAYY 291
A E + VNA+ P I T E L + + P + A +
Sbjct: 207 AIELAPRGVTVNAILP-GNILT---EGLVDMGEEYISGMARSIPMGMLGSPVDIGHLAAF 262
Query: 292 ILSSNPPS-LTGQFL 305
L+++ +TGQ +
Sbjct: 263 -LATDEAGYITGQAI 276
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 96.4 bits (241), Expect = 4e-23
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
+L G T +TG+SRG+GKAIA K GANIV+ A + A+E + AG
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLD------ATAEEFKAAGI 55
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
N + D+++ V++ V A+D FG IDILVNNA
Sbjct: 56 NVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNA 91
Score = 42.8 bits (102), Expect = 8e-05
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 24/135 (17%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGT 187
++++ V A+D FG IDILVNNA I T +T + K +D + N +
Sbjct: 64 VKNPEDVENMVKTAMDAFGRIDILVNNA-GI----TRDTLMLKMSEKDWDDVLNTNLKSA 118
Query: 188 YLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----A 241
YL ++ + K I+NI+ + N Y SK G+ +G A
Sbjct: 119 YLCTKAVSKIMLKQKSGKIINITSIAGIIGNA----GQANYAASKAGL----IGFTKSIA 170
Query: 242 EEFKGDNIAVNALWP 256
+EF I NA+ P
Sbjct: 171 KEFAAKGIYCNAVAP 185
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 96.4 bits (241), Expect = 4e-23
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 10/126 (7%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
+L G +TGA GIG I A GA +++ + A E
Sbjct: 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAA---------LDRAAQELGAA 58
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 125
+ D+ D A+ +A A + + ILVN+A L D T + + +N
Sbjct: 59 VAARIVADVTDAEAMTAAA-AEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNV 117
Query: 126 RGTYLV 131
G +
Sbjct: 118 DGMFWA 123
Score = 73.3 bits (181), Expect = 5e-15
Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 30/230 (13%)
Query: 93 GIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVKA--SQGLEIQSAVNAAVDKF 150
G +++ + A +L A ++ A + A + + +A A +
Sbjct: 35 GARLILIDREAAALDRAAQ----------ELGAAVAARIVADVTDAEAMTAAA-AEAEAV 83
Query: 151 GGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLKKSNHAHILNIS 210
+ ILVN+A L D T + + +N G + S+ + I+N+
Sbjct: 84 APVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLG 143
Query: 211 PPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTG 270
+ +Y SK + +A E+ G + VNAL P + T EM
Sbjct: 144 SMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAP-GYVAT---EMTLK 199
Query: 271 GSADAKATSR-----------KPEIMADAAYYILSSNPPS-LTGQFLIDD 308
+ +P +A AA + L+S S +TG L D
Sbjct: 200 MRERPELFETWLDMTPMGRCGEPSEIAAAALF-LASPAASYVTGAILAVD 248
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 96.4 bits (241), Expect = 4e-23
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
G+L G I +T A++GIG+A AL A++GA ++ +E+E
Sbjct: 2 GRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES-----------KLQELEKYP 50
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 124
G ++D+ + + ++ +D+L N A + + K +D +N
Sbjct: 51 G-IQTRVLDVTKKKQID----QFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLN 105
Query: 125 ARGTYLV 131
R YL+
Sbjct: 106 VRSMYLM 112
Score = 81.0 bits (201), Expect = 1e-17
Identities = 33/184 (17%), Positives = 67/184 (36%), Gaps = 21/184 (11%)
Query: 140 QSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLK 199
+ ++ ++ +D+L N A + + K +D +N R YL+ + LP +
Sbjct: 62 KKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKML 121
Query: 200 KSNHAHILNIS---PPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
+I+N+S + N Y+ +K + +A +F I N + P
Sbjct: 122 AQKSGNIINMSSVASSVKGVV----NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCP 177
Query: 257 RTAIYTAAIEMLTGGSADAKATSR------------KPEIMADAAYYILSSNPPSLTGQ- 303
T + T +++ + + E +A Y+ S +TG
Sbjct: 178 GT-VDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNP 236
Query: 304 FLID 307
+ID
Sbjct: 237 VIID 240
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 96.5 bits (241), Expect = 4e-23
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
L G ++ +TG ++GIG+ IA A+ GAN+ +A ++ A +
Sbjct: 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDAC------VADLDQLGS 59
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
G + D+ D + AV++FGGID++ NA
Sbjct: 60 GKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANA 96
Score = 62.6 bits (153), Expect = 3e-11
Identities = 46/194 (23%), Positives = 71/194 (36%), Gaps = 38/194 (19%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGT 187
S + + AV++FGGID++ NA + + PL + + +N GT
Sbjct: 69 VSDRAQCDALAGRAVEEFGGIDVVCANA-GV----FPDAPLATMTPEQLNGIFAVNVNGT 123
Query: 188 YLVSQKCLPYLKKSNHAHILNISP---PLNLNPFWFKNHVAYTISKYGMSMCALGM---- 240
+ Q CL L S ++ S P+ P W Y +K LG
Sbjct: 124 FYAVQACLDALIASGSGRVVLTSSITGPITGYPGW----SHYGATKAAQ----LGFMRTA 175
Query: 241 AEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR---------KPEIMADAAYY 291
A E I VNA+ P I T E L + A+ PE + A +
Sbjct: 176 AIELAPHKITVNAIMPG-NIMT---EGLLENGEEYIASMARSIPAGALGTPEDIGHLAAF 231
Query: 292 ILSSNPPSLTGQFL 305
+ + +TGQ +
Sbjct: 232 LATKEAGYITGQAI 245
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 96.5 bits (241), Expect = 5e-23
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
+ + +TG S GIG A+ + GA +V + + + V D
Sbjct: 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEK-----------SDVNVSDH- 57
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 124
D+ +E V+ AV K+G IDILVNNA + TP + + + +N
Sbjct: 58 ---FKI--DVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVN 112
Query: 125 ARGTYL 130
G+YL
Sbjct: 113 VNGSYL 118
Score = 78.7 bits (195), Expect = 1e-16
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 20/187 (10%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
E++ AV K+G IDILVNNA + TP + + + +N G+YL+++ +P
Sbjct: 67 EVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPV 126
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP- 256
+ H I+NI+ + N AY SK+ + +A ++ I NA+ P
Sbjct: 127 MLAIGHGSIINIASVQSYAATK--NAAAYVTSKHALLGLTRSVAIDY-APKIRCNAVCPG 183
Query: 257 --RTAIYTAAIEMLTGGSADAKATSR-------------KPEIMADAAYYILSSNPPSLT 301
T + A +M G +A +PE +A+ ++ S +T
Sbjct: 184 TIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLASDRSSFIT 243
Query: 302 GQ-FLID 307
G +D
Sbjct: 244 GACLTVD 250
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 96.5 bits (241), Expect = 5e-23
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
IT ++G+GK + K G ++ + + + + + +D
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDT------TAMETMKETYKDVEE 57
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
D+ + + V A+ FG ID L+NNA
Sbjct: 58 RLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNA 93
Score = 52.9 bits (128), Expect = 4e-08
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 26/138 (18%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKY-----DLMNQINARG 186
++ ++ V A+ FG ID L+NNA + L Y + M Q N
Sbjct: 66 VTKKEDLHKIVEEAMSHFGKIDFLINNAGPYV----FERKKLVDYEEDEWNEMIQGNLTA 121
Query: 187 TYLVSQKCLPYLKKSNHAHILNISPP----LNLNPFWFKNHVAYTISKYGMSMCALGM-- 240
+ + + +P ++K N I+N A+ +K G+ + +
Sbjct: 122 VFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWI----YRSAFAAAKVGL----VSLTK 173
Query: 241 --AEEFKGDNIAVNALWP 256
A E I N + P
Sbjct: 174 TVAYEEAEYGITANMVCP 191
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 96.2 bits (240), Expect = 7e-23
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
T F+TG S GIG A+A A G + A+ A+ + +A + AG +
Sbjct: 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKN-------VSAAVDGLRAAGHD 74
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
D+ V +AV AAV++FG I ILVN+A
Sbjct: 75 VDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSA 109
Score = 51.5 bits (124), Expect = 2e-07
Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 32/196 (16%)
Query: 134 SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQK 193
+ E+ +AV AAV++FG I ILVN+A +TA+ + + N G + V+++
Sbjct: 83 TSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTRE 142
Query: 194 CLPYLK--KSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----AEEFK 245
L ++ I+NI+ + YT SK+G+ +G E
Sbjct: 143 VLRAGGMREAGWGRIVNIASTGGKQGVMY----AAPYTASKHGV----VGFTKSVGFELA 194
Query: 246 GDNIAVNALWP------RTAIYTAAIEMLTGGSAD---AKATSR-------KPEIMADAA 289
I VNA+ P G + + ++ PE +A
Sbjct: 195 KTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLV 254
Query: 290 YYILSSNPPSLTGQFL 305
Y+++ S+T Q L
Sbjct: 255 GYLVTDAAASITAQAL 270
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 95.6 bits (239), Expect = 7e-23
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
KL G +TG++RGIG+AIA K A G+ ++I + E + A + G
Sbjct: 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAV------AEEIANKYGV 57
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+++ E ++ A + GIDILVNNA
Sbjct: 58 KAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNA 93
Score = 42.1 bits (100), Expect = 2e-04
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 26/136 (19%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNAS------AISLTDTANTPLKKYDLMNQINARG 186
I A + GIDILVNNA + ++ ++ + ++N G
Sbjct: 66 LLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSL------LDWEEVLKVNLTG 119
Query: 187 TYLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM---- 240
T+LV+Q L + K I+NIS + N V Y+ +K G+ +G
Sbjct: 120 TFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNV----GQVNYSTTKAGL----IGFTKSL 171
Query: 241 AEEFKGDNIAVNALWP 256
A+E N+ VNA+ P
Sbjct: 172 AKELAPRNVLVNAVAP 187
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 95.2 bits (238), Expect = 8e-23
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L G +TGASRGIG+AIA+ AK GAN+V+ E E++ G +
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKAN------EVVDEIKKLGSD 55
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+ D+ + V + V VD FG +DILVNNA
Sbjct: 56 AIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNA 90
Score = 42.5 bits (101), Expect = 1e-04
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 24/135 (17%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGT 187
+ ++ + V VD FG +DILVNNA + T + L + +D + N +G
Sbjct: 63 VANAEDVTNMVKQTVDVFGQVDILVNNA-GV----TKDNLLMRMKEEEWDTVINTNLKGV 117
Query: 188 YLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----A 241
+L ++ ++ + H I+NI+ + + NP Y +K G+ +G+ A
Sbjct: 118 FLCTKAVSRFMMRQRHGRIVNIASVVGVTGNP----GQANYVAAKAGV----IGLTKTSA 169
Query: 242 EEFKGDNIAVNALWP 256
+E NI VNA+ P
Sbjct: 170 KELASRNITVNAIAP 184
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 95.7 bits (239), Expect = 8e-23
Identities = 50/316 (15%), Positives = 87/316 (27%), Gaps = 87/316 (27%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
G G + G + G+G A + + GA ++
Sbjct: 4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVL--------------------------- 36
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 124
+ + + ++FG A+ ++
Sbjct: 37 ------LTGRNES-----NIARIREEFGP------RVHAL----RSD------------- 62
Query: 125 ARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 184
+ EI AA G ID+L NA L YD +N
Sbjct: 63 --------IADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNT 114
Query: 185 RGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEF 244
+G + Q+ P +++ I+ S + Y+ SK + A +A E
Sbjct: 115 KGAFFTVQRLTPLIREG--GSIVFTSSVADEGGHP--GMSVYSASKAALVSFASVLAAEL 170
Query: 245 KGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR------------KPEIMADAAYYI 292
I VN++ P I T + A+ + +A A +
Sbjct: 171 LPRGIRVNSVSP-GFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLF- 228
Query: 293 LSSNPPSLTGQFLIDD 308
L+ TG L D
Sbjct: 229 LAFEATFTTGAKLAVD 244
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 96.1 bits (240), Expect = 8e-23
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L +TGASRGIG+AIAL+ A+ GA ++ A T + + AG
Sbjct: 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGI-------GAAFKQAGLE 78
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
++++ D AV + V + + +FG +++LVNNA
Sbjct: 79 GRGAVLNVNDATAVDALVESTLKEFGALNVLVNNA 113
Score = 41.8 bits (99), Expect = 2e-04
Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 28/154 (18%)
Query: 118 DLMNQINARG----TYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPL 173
+ G ++ + + + V + + +FG +++LVNNA I T +
Sbjct: 67 GIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNA-GI----TQDQLA 121
Query: 174 KK-----YDLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAY 226
+ +D + N + + +S+ L + K+ I+NI+ + NP V Y
Sbjct: 122 MRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNP----GQVNY 177
Query: 227 TISKYGMSMCALGM----AEEFKGDNIAVNALWP 256
+K G+ GM A E I VN + P
Sbjct: 178 AAAKAGV----AGMTRALAREIGSRGITVNCVAP 207
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 95.8 bits (239), Expect = 9e-23
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
++G + ITGA GIG+ A + AK + +V+ + A + + G
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH-------GLEETAAKCKGLGAK 81
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
+VD + + S+ + G + ILVNNA + +D T + + ++N
Sbjct: 82 VHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVL 141
Query: 127 GT-YLVKA 133
+ KA
Sbjct: 142 AHFWTTKA 149
Score = 67.7 bits (166), Expect = 6e-13
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 8/129 (6%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+I S+ + G + ILVNNA + +D T + + ++N + ++ LP
Sbjct: 94 DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPA 153
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKG---DNIAVNAL 254
+ K+NH HI+ ++ +AY SK+ + +E + L
Sbjct: 154 MTKNNHGHIVTVASAAGHVS--VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCL 211
Query: 255 WP---RTAI 260
P T
Sbjct: 212 CPNFVNTGF 220
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 95.7 bits (239), Expect = 1e-22
Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
L + +TGAS GIG+AIA + +G+ ++ + +
Sbjct: 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIH------------------DPGE 45
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 124
D+ + V+++++ ++G I +LVNNA S + + ++ + +N
Sbjct: 46 AKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVN 105
Query: 125 ARGTYL 130
G Y
Sbjct: 106 LFGYYY 111
Score = 76.1 bits (188), Expect = 6e-16
Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+++++++ ++G I +LVNNA S + + ++ + +N G Y S+ +PY
Sbjct: 60 QVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPY 119
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP- 256
+ +S I+NIS N AY SK+ + +A ++ + NA+ P
Sbjct: 120 MIRSRDPSIVNISSVQASIITK--NASAYVTSKHAVIGLTKSIALDY-APLLRCNAVCPA 176
Query: 257 --RTAIYTAAIEMLTGGSADAKATSR-------------KPEIMADAAYYILSSNPPSLT 301
T + A E+ G KP+ +A A ++ S +T
Sbjct: 177 TIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASREASFIT 236
Query: 302 GQ-FLID 307
G +D
Sbjct: 237 GTCLYVD 243
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 94.9 bits (237), Expect = 1e-22
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
L+ +TGASRGIG +A A GA +V A + K +++ G
Sbjct: 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKF-------ENSMKEKGF 54
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+++I D ++Q+ + IDILVNNA
Sbjct: 55 KARGLVLNISDIESIQNFFAEIKAENLAIDILVNNA 90
Score = 41.7 bits (99), Expect = 2e-04
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 118 DLMNQINARG----TYLVKASQGLEIQSAVNAAVDKFGGIDILVNNAS------AISLTD 167
N + +G ++ S IQ+ + IDILVNNA + +++
Sbjct: 44 KFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSE 103
Query: 168 TANTPLKKYDLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVA 225
++ + N + +S++C+ + K I++I + NP
Sbjct: 104 ------DEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNP----GQTN 153
Query: 226 YTISKYGMSMCALGM----AEEFKGDNIAVNALWP 256
Y +K G+ +G A E NI VN + P
Sbjct: 154 YCAAKAGV----IGFSKSLAYEVASRNITVNVVAP 184
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 95.3 bits (238), Expect = 1e-22
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
M L+G +TGA+ GIG+AIA GA + + + +
Sbjct: 22 MFK---LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTRED----------KLKEIA 68
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
D G + ++ D +++ A + GIDILVNNA
Sbjct: 69 ADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNA 109
Score = 42.1 bits (100), Expect = 1e-04
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 26/136 (19%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNAS------AISLTDTANTPLKKYDLMNQINARG 186
S I+ A + GIDILVNNA + + D + +D + +N
Sbjct: 82 LSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQD------QDWDDVLAVNLTA 135
Query: 187 TYLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM---- 240
++++ + + + + I+NI+ + + NP Y +K G+ +G
Sbjct: 136 ASTLTRELIHSMMRRRYGRIINITSIVGVVGNP----GQTNYCAAKAGL----IGFSKAL 187
Query: 241 AEEFKGDNIAVNALWP 256
A+E NI VN + P
Sbjct: 188 AQEIASRNITVNCIAP 203
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 95.3 bits (238), Expect = 1e-22
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
L+ +TGASRGIG+AIAL+ A GA + + ++ G + AGG
Sbjct: 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSA------GAADEVVAAIAAAGG 78
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
D+ E V++ A ++++G +D+LVNNA
Sbjct: 79 EAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNA 114
Score = 45.2 bits (108), Expect = 1e-05
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 39/193 (20%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGT 187
SQ E+++ A ++++G +D+LVNNA I T +T L + + + +N G
Sbjct: 87 VSQESEVEALFAAVIERWGRLDVLVNNA-GI----TRDTLLLRMKRDDWQSVLDLNLGGV 141
Query: 188 YLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----A 241
+L S+ + K I+NI+ + NP Y+ +K G+ +G+ A
Sbjct: 142 FLCSRAAAKIMLKQRSGRIINIASVVGEMGNP----GQANYSAAKAGV----IGLTKTVA 193
Query: 242 EEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-------KPEIMADAAYYILS 294
+E I VNA+ P I T +M T A K + +A + L+
Sbjct: 194 KELASRGITVNAVAP-GFIAT---DM-TSELAAEKLLEVIPLGRYGEAAEVAGVVRF-LA 247
Query: 295 SNPPS--LTGQFL 305
++P + +TGQ +
Sbjct: 248 ADPAAAYITGQVI 260
>1ikt_A Estradiol 17 beta-dehydrogenase 4; ALFA-beta fold, protein-triton
X-100 complex, hydrophobic tunnel; HET: OXN; 1.75A {Homo
sapiens} SCOP: d.106.1.1
Length = 120
Score = 91.2 bits (226), Expect = 1e-22
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 320 QYSYVPNGAAEGSWHIDLKTGSGSSGRGKPSSTVDATLTMTEKNFIALFEGKLKPTSAFM 379
++ G W IDLK+GSG +G D T+ +++++F+ + GKL P AF
Sbjct: 35 EWHITKGGNIGAKWTIDLKSGSGKVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQKAFF 94
Query: 380 TGKLKISGNLQKAMKLEKLMGALKSKL 406
+G+LK GN+ + KL+ ++ +KL
Sbjct: 95 SGRLKARGNIMLSQKLQMILKDY-AKL 120
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 94.6 bits (236), Expect = 2e-22
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+ ITGAS GIG+AIA + +++G +++ A+ E +L K +
Sbjct: 11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVE---RL--------KAL--N 57
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
N L VD+ D++ +A+ A +G D +VNNA + L ++ M +
Sbjct: 58 LPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDV 117
Query: 124 NARGT-YLVKA 133
N G ++A
Sbjct: 118 NVLGLLNGMQA 128
Score = 66.1 bits (162), Expect = 2e-12
Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 21/170 (12%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+A+ A +G D +VNNA + L ++ M +N G Q L
Sbjct: 73 TFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAP 132
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPR 257
+K N I+NIS F +H AY +K+ + + + EE N+ V
Sbjct: 133 MKARNCGTIINISSIAGKKT--FPDHAAYCGTKFAVHAISENVREEVAASNVRV------ 184
Query: 258 TAIYTAAIE-----MLTGGSADAKATSRK--------PEIMADAAYYILS 294
I +A++ T + + + +A A +
Sbjct: 185 MTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLAADDVARAVLFAYQ 234
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 94.1 bits (235), Expect = 2e-22
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+ +TGASRGIG++IAL+ A++G N+ + ++ + + +E++ G +
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAE------AVVEEIKAKGVD 55
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
++ D V++ + V +FG +D+LVNNA
Sbjct: 56 SFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNA 90
Score = 42.5 bits (101), Expect = 1e-04
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGT 187
+ E+++ + V +FG +D+LVNNA I T + L + +D + N +G
Sbjct: 63 VADADEVKAMIKEVVSQFGSLDVLVNNA-GI----TRDNLLMRMKEQEWDDVIDTNLKGV 117
Query: 188 YLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----A 241
+ QK P + + I+N+S + NP Y +K G+ +G+ A
Sbjct: 118 FNCIQKATPQMLRQRSGAIINLSSVVGAVGNP----GQANYVATKAGV----IGLTKSAA 169
Query: 242 EEFKGDNIAVNALWP 256
E I VNA+ P
Sbjct: 170 RELASRGITVNAVAP 184
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 94.9 bits (237), Expect = 2e-22
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 10/130 (7%)
Query: 3 NTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED 62
+T +L ITG + GIG+ A + GA +VIA + K+ +
Sbjct: 10 STNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKV-------CNNIG- 61
Query: 63 AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA--SAISLTDTANTPLKKYDLM 120
+ D+ + V++ V+ + K G +DI+ N + + + + +
Sbjct: 62 SPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRV 121
Query: 121 NQINARGTYL 130
IN G +L
Sbjct: 122 MDINVYGAFL 131
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 94.6 bits (236), Expect = 3e-22
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
G T+FITGA+ G G+A A + A+ G ++V+ + E L A E+ A
Sbjct: 17 GSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQAL-------AGELS-AK 68
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKYDLMNQI 123
LP +D+RD A+ +AV+ ++F + L+NNA A+ + L +D M
Sbjct: 69 TRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDT 128
Query: 124 NARGT-YLVKA 133
N +G Y +
Sbjct: 129 NIKGLLYSTRL 139
Score = 58.4 bits (142), Expect = 7e-10
Identities = 33/170 (19%), Positives = 65/170 (38%), Gaps = 21/170 (12%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLP 196
+ +AV+ ++F + L+NNA A+ + L +D M N +G ++ LP
Sbjct: 83 AMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLP 142
Query: 197 YLKKSNH-AHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALW 255
L A I+N+ P + Y +K + +L + + +G + V
Sbjct: 143 RLIAHGAGASIVNLGSVAGKWP--YPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRV---- 196
Query: 256 PRTAIYTAAIE-----MLTGGSADAKATSRK------PEIMADAAYYILS 294
T + E + GG + PE +A+ ++I++
Sbjct: 197 --TNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMN 244
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 94.1 bits (235), Expect = 3e-22
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 8/126 (6%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L T+ +TG ++GIG AI + A GA I A+ + + + G
Sbjct: 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYE-------LNECLSKWQKKGFQ 64
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGG-IDILVNNASAISLTDTANTPLKKYDLMNQINA 125
+ D + + FGG +DIL+NN AI T + + + N
Sbjct: 65 VTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNL 124
Query: 126 RGTYLV 131
Y +
Sbjct: 125 ESAYHL 130
Score = 72.1 bits (178), Expect = 2e-14
Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 27/184 (14%)
Query: 138 EIQSAVNAAVDKFGG-IDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLP 196
E + + FGG +DIL+NN AI T + + + N Y +SQ P
Sbjct: 77 EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHP 136
Query: 197 YLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
LK S +I+ +S + Y+ +K ++ A +A E+ D I NA+ P
Sbjct: 137 LLKASGCGNIIFMSSIAGV--VSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAP 194
Query: 257 RTAIYTAAIEMLTGGSADAKATSRKP--------EIMA-------DAAYYILSSNPPSLT 301
I T E + SRKP E+ + AA YI T
Sbjct: 195 -AVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYI--------T 245
Query: 302 GQFL 305
GQ +
Sbjct: 246 GQTI 249
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 93.8 bits (234), Expect = 4e-22
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 13/127 (10%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
++G +TGA++GIG+A A GA + + E + AA +
Sbjct: 2 AHMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQC-----KAALHEQFE 56
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
L D+ D+ ++ VD FG +DILVNNA + K ++ QI
Sbjct: 57 PQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNA-GV-------NNEKNWEKTLQI 108
Query: 124 NARGTYL 130
N
Sbjct: 109 NLVSVIS 115
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 93.4 bits (233), Expect = 5e-22
Identities = 50/307 (16%), Positives = 91/307 (29%), Gaps = 81/307 (26%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
I ITG++ GIG A+ A+ G ++ + ++ GG
Sbjct: 3 VIAITGSASGIGAALKELLARAGHTVIGIDRGQAD----------IEADLSTPGG----- 47
Query: 71 IVDIRDEHAVQSAVNAAVDKFGG-IDILVNNASAISLTDTANTPLKKYDLMNQINARGTY 129
++AV A +D+ GG +D LV A
Sbjct: 48 ---------RETAVAAVLDRCGGVLDGLVCCA---------------------------- 70
Query: 130 LVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK--YDLMNQINARGT 187
G+ + VN +L D L + + +
Sbjct: 71 -------------GVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAA 117
Query: 188 YLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGD 247
LP ++ H+AY SKY ++ A ++ G
Sbjct: 118 TQPGAAELPMVEAMLAGDEARAIELAEQQGQ---THLAYAGSKYAVTCLARRNVVDWAGR 174
Query: 248 NIAVNALWPRTAIYTAAIEMLTGGSADAKATSR---------KPEIMADAAYYILSSNPP 298
+ +N + P A+ T ++ ++T R +P +A+A ++L
Sbjct: 175 GVRLNVVAP-GAVETPLLQASKADPRYGESTRRFVAPLGRGSEPREVAEAIAFLLGPQAS 233
Query: 299 SLTGQFL 305
+ G L
Sbjct: 234 FIHGSVL 240
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 93.4 bits (233), Expect = 5e-22
Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 16/131 (12%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
+ + + ITGAS+GIG + +V +++ +
Sbjct: 20 FQSMMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIK---------------- 63
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
A + DI V +++FG ID LVNNA + YD
Sbjct: 64 PSADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHN 123
Query: 121 NQINARGTYLV 131
+N G + +
Sbjct: 124 LGVNVAGFFHI 134
Score = 67.6 bits (166), Expect = 6e-13
Identities = 30/119 (25%), Positives = 51/119 (42%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
V +++FG ID LVNNA + YD +N G + ++Q+
Sbjct: 82 TADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAE 141
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
+ K HI++I+ L P +++K G++ +A EF + VNA+ P
Sbjct: 142 MLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSP 200
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 94.4 bits (235), Expect = 6e-22
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTA-EPHPKLPGTIYSAAKE 59
M+ + K I ITGAS G G+ A A G V A + + + + + A
Sbjct: 1 MVMSKK----IILITGASSGFGRLTAEALAGAGHR-VYA--SMRDIVGRNASNVEAIAGF 53
Query: 60 VEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
D + +D++ + +V A++ + + G ID+L++NA
Sbjct: 54 ARDNDVDLRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNA 95
Score = 58.6 bits (142), Expect = 9e-10
Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 10/150 (6%)
Query: 139 IQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYL 198
+ A++ + + G ID+L++NA + +++ + IN T V++ LP++
Sbjct: 74 VDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHM 133
Query: 199 KKSNHAHILNISP---PLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALW 255
++ H ++ IS P+ Y +K M A+ A E I + +
Sbjct: 134 RRQKHGLLIWISSSSSAGGTPPYL----APYFAAKAAMDAIAVQYARELSRWGIETSIIV 189
Query: 256 P---RTAIYTAAIEMLTGGSADAKATSRKP 282
P + A + A P
Sbjct: 190 PGAFTSGTNHFAHSGVPDDHARQAEYEAGP 219
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 93.5 bits (233), Expect = 6e-22
Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 18/166 (10%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
M+ + G + ++G + G+G+A + DG +VIA AE
Sbjct: 22 MVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAE----------KGKALA 71
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA-----SAISLTDTANTPLK 115
++ G ++ E +V +A+ AA +V + I D + +
Sbjct: 72 DELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMG 131
Query: 116 KYDLMNQINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNAS 161
+ + GTY V L S A + G LV AS
Sbjct: 132 GFTKTIDLYLNGTYNVAR---LVAASIAAAEPRENGERGALVLTAS 174
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 93.0 bits (232), Expect = 7e-22
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
+L + ITGA+ GIG+A AK+GA +V P + E G
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP----------LREAAEAVGA 51
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+ + D+ D +V+ A+ G +D +V+ A
Sbjct: 52 HPVVM--DVADPASVERGFAEALAHLGRLDGVVHYA 85
Score = 49.0 bits (118), Expect = 7e-07
Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 106 LTDTANTPLKKYDLMNQINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISL 165
D PL++ + A ++ + ++ A+ G +D +V+ A I
Sbjct: 34 ACDIEEGPLRE--AAEAVGAHP-VVMDVADPASVERGFAEALAHLGRLDGVVHYA-GI-- 87
Query: 166 TDTANTPLKK-----YDLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNL-NPFW 219
T + K ++L+ ++N G++LV++ +++ N I+ + + L N
Sbjct: 88 --TRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGNL-- 143
Query: 220 FKNHVAYTISKYGMSMCALGM----AEEFKGDNIAVNALWP 256
Y S G+ +G+ A E I VN L P
Sbjct: 144 --GQANYAASMAGV----VGLTRTLALELGRWGIRVNTLAP 178
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 93.4 bits (233), Expect = 7e-22
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Query: 6 KLSGLTIFITGAS--RGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
L G + +TGAS +G+G A A+ GA + I + + KE+E
Sbjct: 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAE------ENVKELEKT 70
Query: 64 GG-NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQ 122
G + + + V V FG ID + NA A + + + ++ ++ + Q
Sbjct: 71 YGIKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQ 130
Query: 123 INARGTYLV 131
++ GT+
Sbjct: 131 VDLNGTFHC 139
>1c44_A Protein (sterol carrier protein 2); non specific lipid transfer
protein, fatty acid binding, fatty acyl COA binding,
lipid binding protein; 1.80A {Oryctolagus cuniculus}
SCOP: d.106.1.1 PDB: 1qnd_A 2c0l_B
Length = 123
Score = 89.3 bits (221), Expect = 7e-22
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 325 PNGAAEGSWHIDLKTGSGSSGRGKPSSTVDATLTMTEKNFIALFEGKLKPTSAFMTGKLK 384
G E +W +D+K G GS D T+TM + + +AL GK+ P SAF GKLK
Sbjct: 42 GPGGKEATWVVDVKNGKGSVLPNSDKKA-DCTITMADSDLLALMTGKMNPQSAFFQGKLK 100
Query: 385 ISGNLQKAMKLEKLMG-ALKSKL 406
I+GN+ AMKL+ L K+KL
Sbjct: 101 ITGNMGLAMKLQNLQLQPGKAKL 123
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 93.5 bits (233), Expect = 8e-22
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 9/125 (7%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG- 64
+ +TGAS GIG A+A + G +V A+T I A E + AG
Sbjct: 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG-------NIEELAAECKSAGY 81
Query: 65 -GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 123
G +P D+ +E + S +A + G+DI +NNA + + M +
Sbjct: 82 PGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNV 141
Query: 124 NARGT 128
N
Sbjct: 142 NVLAL 146
Score = 62.7 bits (153), Expect = 3e-11
Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 21/172 (12%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+I S +A + G+DI +NNA + + M +N + +++
Sbjct: 97 DILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQS 156
Query: 198 LKKSN--HAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEF--KGDNIAVNA 253
+K+ N HI+NI+ Y+ +KY ++ G+ +E +I
Sbjct: 157 MKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRA-- 214
Query: 254 LWPRTAIYTAAIE-----MLTGGSADAKATSR------KPEIMADAAYYILS 294
T I +E L + A + KPE +A+A Y+LS
Sbjct: 215 ----TCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLS 262
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 92.6 bits (231), Expect = 1e-21
Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 18/131 (13%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
+ G +TGA+ GIG A+ GA + +A +
Sbjct: 20 FQSMQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVA---------------- 63
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 120
L D+R+ A G +DI+VNNA IS T + L
Sbjct: 64 --GIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLS 121
Query: 121 NQINARGTYLV 131
+N + +
Sbjct: 122 LGVNVEAPFRI 132
Score = 81.8 bits (203), Expect = 8e-18
Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 14/184 (7%)
Query: 134 SQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQK 193
+ A G +DI+VNNA IS T + L +N + + +
Sbjct: 76 REAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRA 135
Query: 194 CLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNA 253
+P + + I+N++ L P H Y ++K ++ M + I +NA
Sbjct: 136 AIPLMAAAGGGAIVNVASCWGLRPGP--GHALYCLTKAALASLTQCMGMDHAPQGIRINA 193
Query: 254 LWP---RTAIYTAAIEMLTGGSADAKATSR---------KPEIMADAAYYILSSNPPSLT 301
+ P T + A A +PE +AD ++ S L
Sbjct: 194 VCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVVLFLASDAARYLC 253
Query: 302 GQFL 305
G +
Sbjct: 254 GSLV 257
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 91.8 bits (229), Expect = 1e-21
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
+ +TGASRGIGKAIAL K G +++ + + +K++E GG +
Sbjct: 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAE------EVSKQIEAYGGQAITF 56
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
D+ E V++ + A+D +G ID++VNNA
Sbjct: 57 GGDVSKEADVEAMMKTAIDAWGTIDVVVNNA 87
Score = 44.8 bits (107), Expect = 2e-05
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 24/135 (17%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGT 187
S+ ++++ + A+D +G ID++VNNA I T +T L + +D + +N G
Sbjct: 60 VSKEADVEAMMKTAIDAWGTIDVVVNNA-GI----TRDTLLIRMKKSQWDEVIDLNLTGV 114
Query: 188 YLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----A 241
+L +Q + K I+NI+ + L N Y +K G+ +G A
Sbjct: 115 FLCTQAATKIMMKKRKGRIINIASVVGLIGNI----GQANYAAAKAGV----IGFSKTAA 166
Query: 242 EEFKGDNIAVNALWP 256
E NI VN + P
Sbjct: 167 REGASRNINVNVVCP 181
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 92.2 bits (230), Expect = 1e-21
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 5 GKLSGLTIFITGAS-RGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
G L G + +T A+ GIG A +A +GA++VI+ + + +
Sbjct: 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGET------RDQLADLG 71
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
G + D+ AV + + V+K G +D+LVNNA
Sbjct: 72 LGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNA 109
Score = 60.6 bits (148), Expect = 1e-10
Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 25/183 (13%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+ + + V+K G +D+LVNNA T + +++D + + ++ L Y
Sbjct: 87 AVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRY 146
Query: 198 LKKSNHA-HILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----AEEFKGDNIA 250
+ +H I+N + L + Y +K G+ + + A E +
Sbjct: 147 FRGVDHGGVIVNNASVLGWRAQH----SQSHYAAAKAGV----MALTRCSAIEAVEFGVR 198
Query: 251 VNALWPRTAIYTAAIEMLTGGSADAKATSR-------KPEIMADAAYYILSSNPPS-LTG 302
+NA+ P + +E + + S +P +A + L+S+ S +TG
Sbjct: 199 INAVSP-SIARHKFLEKTSSSELLDRLASDEAFGRAAEPWEVAATIAF-LASDYSSYMTG 256
Query: 303 QFL 305
+ +
Sbjct: 257 EVV 259
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 92.2 bits (230), Expect = 1e-21
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+L +TGA GIG+A++++ A +GA + + + +
Sbjct: 2 QNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPP 61
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGI-DILVNNA 101
GN D+ + A + + F ++V+ A
Sbjct: 62 RGNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCA 100
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 93.2 bits (232), Expect = 2e-21
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED--AG 64
+G T F+TG + G+G + + G + IA + +I A +E +G
Sbjct: 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQD-------SIDKALATLEAEGSG 58
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 124
+ +D+ + A + +FG + IL NNA + +D + +N
Sbjct: 59 PEVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVN 118
Query: 125 ARG 127
G
Sbjct: 119 LHG 121
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 91.6 bits (228), Expect = 3e-21
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
+ GL ITG + G+G A A + GA+ V+ + + G
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS----------GGEAQAKKLGN 58
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA------SAISLTDTANTPLKKYDL 119
NC+ D+ E VQ+A+ A KFG +D+ VN A +L L+ +
Sbjct: 59 NCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQR 118
Query: 120 MNQINARGTYLV 131
+ +N GT+ V
Sbjct: 119 VLDVNLMGTFNV 130
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 91.1 bits (227), Expect = 3e-21
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 10 LTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLP 69
+ + +TGA+ G G+ I + + G ++ + E +L + ++ G N
Sbjct: 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQE---RL-------QELKDELGDNLYI 50
Query: 70 CIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKYDLMNQINARGT 128
+D+R+ A++ + + ++ IDILVNNA A+ + ++ ++ M N +G
Sbjct: 51 AQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGL 110
Query: 129 -YLVKA 133
Y+ +A
Sbjct: 111 VYMTRA 116
Score = 62.6 bits (153), Expect = 2e-11
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLP 196
I+ + + ++ IDILVNNA A+ + ++ ++ M N +G +++ LP
Sbjct: 60 AIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLP 119
Query: 197 YLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAV 251
+ + NH HI+NI P + Y +K + +L + + G + V
Sbjct: 120 GMVERNHGHIINIGSTAGSWP--YAGGNVYGATKAFVRQFSLNLRTDLHGTAVRV 172
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 90.7 bits (226), Expect = 4e-21
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 18/124 (14%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+ +TG S+GIGKA+ ++ + VI + + N
Sbjct: 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQ----------------SFSAEN 45
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
D+ + + + ++ K D + NA + + ++ + +N
Sbjct: 46 LKFIKADLTKQQDITNVLDII--KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVW 103
Query: 127 GTYL 130
+
Sbjct: 104 SSIY 107
Score = 74.1 bits (183), Expect = 3e-15
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 25/188 (13%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+I + ++ K D + NA + + ++ + +N + +
Sbjct: 58 DITNVLDII--KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENN 115
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP- 256
LK A I+ N AYT+SK ++ +A + I VN + P
Sbjct: 116 LKVG--ASIVFNGSDQCFIAKP--NSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPG 171
Query: 257 --RTAIYTAAIEMLTGGSADAKATSR-------------KPEIMADAAYYILSSNPPS-L 300
T +Y I+ + ++ +P+ +A+ + L S+ +
Sbjct: 172 TVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIF-LLSDKSKFM 230
Query: 301 TGQ-FLID 307
TG ID
Sbjct: 231 TGGLIPID 238
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 90.5 bits (225), Expect = 6e-21
Identities = 55/321 (17%), Positives = 100/321 (31%), Gaps = 87/321 (27%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAK---DGANIVIAAKTAEPHPKLPGTIYSAAKEVE 61
L +TGASRG G+A+A + A+ G+ ++++A++ +L + + +
Sbjct: 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGA-----Q 56
Query: 62 DAGGNCLPCIVDIRDEHAVQSAVNAAVDKFG----GIDILVNNASAISLTDTANTPLKKY 117
+ D+ E VQ ++A + +L+NNA+ +L D + L
Sbjct: 57 QPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAA--TLGDVSKGFLNVN 114
Query: 118 DLMNQINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYD 177
DL + VN +N S + LT
Sbjct: 115 DL---------------------AEVNNYWA--------LNLTSMLCLT----------- 134
Query: 178 LMNQINARGTYLVSQKCLPYLKKSN--HAHILNISPPLNLNPFWFKNHVAYTISKYGMSM 235
L + S ++NIS L P +K Y K M
Sbjct: 135 --------------SGTLNAFQDSPGLSKTVVNISSLCALQP--YKGWGLYCAGKAARDM 178
Query: 236 CALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-----------KPEI 284
+A E ++ V + P + ++ S D + S+
Sbjct: 179 LYQVLAAE--EPSVRVLSYAP-GPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGT 235
Query: 285 MADAAYYILSSNPPSLTGQFL 305
A +L +G +
Sbjct: 236 SAQKLLGLLQK-DTFQSGAHV 255
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 90.0 bits (224), Expect = 7e-21
Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 20/132 (15%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
++ G I + G S +G + N +
Sbjct: 14 LVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISID-------------------F 54
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKYDL 119
+ + E ++S + K +D V A +++ LK
Sbjct: 55 RENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKG 114
Query: 120 MNQINARGTYLV 131
M +N +
Sbjct: 115 MIDMNLYSAFAS 126
Score = 85.0 bits (211), Expect = 4e-19
Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 12/182 (6%)
Query: 118 DLMNQINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKY 176
D NA ++ +K S EI+S + K +D V A +++ LK
Sbjct: 53 DFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSV 112
Query: 177 DLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMC 236
M +N + + L + + LN +AY +K
Sbjct: 113 KGMIDMNLYSAFASAHIGAKLLNQG--GLFVLTGASAALNRTS--GMIAYGATKAATHHI 168
Query: 237 ALGMAEEFKG--DNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-KPEIMADAAYYIL 293
+A E G + P + T +DA +A+ +
Sbjct: 169 IKDLASENGGLPAGSTSLGILP-VTLDT---PTNRKYMSDANFDDWTPLSEVAEKLFEWS 224
Query: 294 SS 295
++
Sbjct: 225 TN 226
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 89.9 bits (224), Expect = 8e-21
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 14 ITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPCIVD 73
+T G AL+ ++ G + ++ + E+E
Sbjct: 6 VTNVKHFGGMGSALRLSEAGHTVACHDESFK-----------QKDELEAFAETYPQL--K 52
Query: 74 IRDEHAVQSAVNAAVDKFGGIDILVNNA 101
E + A +G +D+LV+N
Sbjct: 53 PMSEQEPAELIEAVTSAYGQVDVLVSND 80
Score = 61.8 bits (151), Expect = 5e-11
Identities = 33/196 (16%), Positives = 64/196 (32%), Gaps = 26/196 (13%)
Query: 129 YLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQIN 183
+K E + A +G +D+LV+N P+ K Y +
Sbjct: 49 PQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAP----EFQPIDKYAVEDYRGAVEAL 104
Query: 184 ARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEE 243
+ + +KK HI+ I+ P +K YT ++ G A +++E
Sbjct: 105 QIRPFALVNAVASQMKKRKSGHIIFITSATPFGP--WKELSTYTSARAGACTLANALSKE 162
Query: 244 FKGDNIAVNALWP---RTAIYTAAIEMLTGGSADAKATSR-----------KPEIMADAA 289
NI V A+ P + + + + + + + +
Sbjct: 163 LGEYNIPVFAIGPNYLHSED-SPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELV 221
Query: 290 YYILSSNPPSLTGQFL 305
++ S + LTGQ
Sbjct: 222 AFLASGSCDYLTGQVF 237
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 90.0 bits (224), Expect = 9e-21
Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
+L +TGAS G+G A+ A++GA ++ + + + G
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPP----------AGEEPAAELGA 53
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA----SAISLTDTANTPLKKYDLMN 121
D+ +E +A+ A +FG + LVN A L + L +
Sbjct: 54 AVRFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTV 113
Query: 122 QINARGTYLV 131
+N GT+ +
Sbjct: 114 AVNLIGTFNM 123
Score = 45.7 bits (109), Expect = 9e-06
Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 32/188 (17%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNA----SAISLTDTANTPLKKYDLMNQINARGTYLVSQK 193
+ +A+ A +FG + LVN A L + L + +N GT+ + +
Sbjct: 67 DATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRL 126
Query: 194 CLPYLKKSNHAH------ILNISPPLNLNPFWFKN--HVAYTISKYGMSMCALGMAEEFK 245
+ + I+N + + AY SK G++ L A E
Sbjct: 127 AAEVMSQGEPDADGERGVIVNTASIAAFDG----QIGQAAYAASKGGVAALTLPAARELA 182
Query: 246 GDNIAVNALWPRTAIYTAAIEMLTGGSADAKAT--------SR--KPEIMADAAYYILSS 295
I V + P T M+ G D + R + E A +I +
Sbjct: 183 RFGIRVVTIAP-GIFDT---PMMAGMPQDVQDALAASVPFPPRLGRAEEYAALVKHICEN 238
Query: 296 NPPSLTGQ 303
L G+
Sbjct: 239 --TMLNGE 244
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 90.4 bits (225), Expect = 9e-21
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
M + K +TGAS G G+AIA A G ++ A+ E + V
Sbjct: 1 MSESAK----VWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTE----------ALDDLV 46
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+D+ D + + ++G +D+LVNNA
Sbjct: 47 AAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVLVNNA 87
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 89.9 bits (224), Expect = 9e-21
Identities = 47/305 (15%), Positives = 98/305 (32%), Gaps = 75/305 (24%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
+L G T +TG++ GIGKAIA +GAN++I
Sbjct: 7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLING------------------------- 41
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 125
R E V + ++ + A L
Sbjct: 42 ---------RREENVNETIKEIRAQYPDAILQPVVAD---LGTEQ--------------- 74
Query: 126 RGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 185
++K+ +DIL+NN + + P + + + ++N
Sbjct: 75 ----------------GCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIM 118
Query: 186 GTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFK 245
+++ L + + ++ I+ + P Y+ +K + +AE
Sbjct: 119 SGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEM--AHYSATKTMQLSLSRSLAELTT 176
Query: 246 GDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPSLTGQFL 305
G N+ VN + P + T +E + + + E ++ + P S+ + +
Sbjct: 177 GTNVTVNTIMP-GSTLTEGVETMLNSLYPNEQLTI-EEAEKR---FMKENRPTSIIQRLI 231
Query: 306 IDDEV 310
+E+
Sbjct: 232 RPEEI 236
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 89.5 bits (223), Expect = 1e-20
Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 20/123 (16%)
Query: 14 ITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPCIVD 73
+T A G A +DG +V + E E+ G
Sbjct: 6 VTHARHFAGPAAVEALTQDGYTVVCHDASFA------DAAERQRFESENPGT-------I 52
Query: 74 IRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGT 128
E + V+A + ID +V+N I PL+ M + +
Sbjct: 53 ALAEQKPERLVDATLQHGEAIDTIVSND-YIP-RPMNRLPLEGTSEADIRQMFEALSIFP 110
Query: 129 YLV 131
L+
Sbjct: 111 ILL 113
Score = 75.6 bits (187), Expect = 7e-16
Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 24/200 (12%)
Query: 122 QINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----Y 176
+ G A + + V+A + ID +V+N I PL+
Sbjct: 45 ESENPG---TIALAEQKPERLVDATLQHGEAIDTIVSND-YIP-RPMNRLPLEGTSEADI 99
Query: 177 DLMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMC 236
M + + L+ Q + L+ + A ++ I+ + P + Y ++
Sbjct: 100 RQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKP--LAYNPLYGPARAATVAL 157
Query: 237 ALGMAEEFKGDNIAVNALWP---RTAIYTAAIEMLTGGSADAKATSR-------KPEIMA 286
A+ D I + A+ P Y + + +P+ M
Sbjct: 158 VESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGRLGRPDEMG 217
Query: 287 DAAYYILSSNPPS-LTGQFL 305
+ L+S + + GQF
Sbjct: 218 ALITF-LASRRAAPIVGQFF 236
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 89.5 bits (223), Expect = 1e-20
Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 17/126 (13%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
SG +++TGA +GIG A AL + GA + +
Sbjct: 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT-----------------QEQY 46
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 125
++D+ D V + + +D LVN A + + T + + +N
Sbjct: 47 PFATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNV 106
Query: 126 RGTYLV 131
G + +
Sbjct: 107 GGAFNL 112
Score = 60.6 bits (148), Expect = 1e-10
Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 6/151 (3%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
++ + + +D LVN A + + T + + +N G + + Q+ +
Sbjct: 60 QVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQ 119
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPR 257
++ I+ ++ P AY SK + AL + E G + N + P
Sbjct: 120 FRRQRGGAIVTVASDAAHTPRI--GMSAYGASKAALKSLALSVGLELAGSGVRCNVVSP- 176
Query: 258 TAIYTAAIEMLTGGSADAKATSRKPEIMADA 288
+ T +M A ++ +
Sbjct: 177 GSTDT---DMQRTLWVSDDAEEQRIRGFGEQ 204
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 89.5 bits (223), Expect = 2e-20
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+ F+TG G+G AI+ + G + ++ H + DAG +
Sbjct: 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVS------TWLMHERDAGRD 76
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
VD+ D + + + FG +D+L+NNA
Sbjct: 77 FKAYAVDVADFESCERCAEKVLADFGKVDVLINNA 111
Score = 41.4 bits (98), Expect = 3e-04
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGTYLVSQ 192
+ + FG +D+L+NNA I T + K +D + + + + V++
Sbjct: 89 SCERCAEKVLADFGKVDVLINNA-GI----TRDATFMKMTKGDWDAVMRTDLDAMFNVTK 143
Query: 193 KCLPYLKKSNHAHILNIS 210
+ + + + I+NI
Sbjct: 144 QFIAGMVERRFGRIVNIG 161
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 89.1 bits (222), Expect = 2e-20
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+S ++TG GIG +I + KDG +V P ++ + G +
Sbjct: 11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRV------KWLEDQKALGFD 64
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
++ D + + A + + G ID+LVNNA
Sbjct: 65 FYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNA 99
Score = 41.7 bits (99), Expect = 2e-04
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YDLMNQINARGTYLVSQ 192
+ A + + G ID+LVNNA I T + +K + + N + V++
Sbjct: 77 STKQAFDKVKAEVGEIDVLVNNA-GI----TRDVVFRKMTREDWQAVIDTNLTSLFNVTK 131
Query: 193 KCLPYLKKSNHAHILNIS 210
+ + + + I+NIS
Sbjct: 132 QVIDGMVERGWGRIINIS 149
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 88.7 bits (221), Expect = 2e-20
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
ITGASRGIG+AIAL+ A+DG + I + A+E G +
Sbjct: 3 KALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAE------EVAEEARRRGSPLVAV 56
Query: 71 I-VDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+ ++ + A + V+ A + GG+D LVNNA
Sbjct: 57 LGANLLEAEAATALVHQAAEVLGGLDTLVNNA 88
Score = 43.2 bits (103), Expect = 6e-05
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 24/145 (16%)
Query: 123 INARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKK-----YD 177
+ + V+ A + GG+D LVNNA I T +T L + ++
Sbjct: 51 SPLVAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNA-GI----TRDTLLVRMKDEDWE 105
Query: 178 LMNQINARGTYLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSM 235
+ + N + +++ + + K+ I+NI+ + + NP Y SK G+
Sbjct: 106 AVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNP----GQANYVASKAGL-- 159
Query: 236 CALGM----AEEFKGDNIAVNALWP 256
+G A+E+ I VNA+ P
Sbjct: 160 --IGFTRAVAKEYAQRGITVNAVAP 182
>3cnu_A Predicted coding region AF_1534; structural GE MCSG, PSI-2, protein
structure initiative, midwest center F structural
genomics; 1.90A {Archaeoglobus fulgidus dsm 4304} PDB:
3bn8_A*
Length = 116
Score = 85.0 bits (210), Expect = 2e-20
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 330 EGSWHIDLKT-GSGSSGRGKPSSTVDATLTMTEKNFIALFEGKLKPTSAFMTGKLKISGN 388
++++ K+ G+ G SS T+ ++A+ +G+ P S FM GK +I GN
Sbjct: 38 GEEFYVEYKSDGTCEFKEGVHSSP-TFTVVAPPDFWLAVLKGQEDPVSGFMMGKYRIEGN 96
Query: 389 LQKAMKLEKLMGALKSKL 406
+ +A +L ++ + K
Sbjct: 97 IMEAQRLAGVIKKFQGKF 114
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 88.5 bits (220), Expect = 5e-20
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 14/135 (10%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDG---ANIVIAAKTAEPHPKLPGTIYSAAKEVED 62
+L+ T+ ITGAS GIGKA AL+ + +++AA+ E +L K ++
Sbjct: 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEEL-------KKTIDQ 82
Query: 63 A--GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKYDL 119
+DI ++ + +F IDILVNNA A+ +
Sbjct: 83 EFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQD 142
Query: 120 MNQINARGT-YLVKA 133
+ N + +A
Sbjct: 143 VFDTNVTALINITQA 157
Score = 65.4 bits (160), Expect = 4e-12
Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 20/169 (11%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNA-SAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLP 196
+I+ + +F IDILVNNA A+ + + N ++Q LP
Sbjct: 101 KIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLP 160
Query: 197 YLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
+ N I+N+ + + Y SK+ + + +E I V
Sbjct: 161 IFQAKNSGDIVNLGSIAGRDA--YPTGSIYCASKFAVGAFTDSLRKELINTKIRV----- 213
Query: 257 RTAIYTAAIE------MLTGGSADAKATSR-----KPEIMADAAYYILS 294
I +E G AK + + +AD Y S
Sbjct: 214 -ILIAPGLVETEFSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATS 261
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 89.0 bits (221), Expect = 6e-20
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSA---AKEVE 61
G + G + +TGA GIG+A AL A +GA +V+ +A E+
Sbjct: 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT 82
Query: 62 DAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDT--ANTPLKKYDL 119
AGG + ++ D + AV+ FGG+D+LVNNA I + D ANT +++D
Sbjct: 83 AAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNA-GI-VRDRMIANTSEEEFDA 140
Query: 120 MNQINARGTYLV 131
+ ++ +G +
Sbjct: 141 VIAVHLKGHFAT 152
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 87.3 bits (217), Expect = 7e-20
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
L+ + A GIG + + K + E L A + +
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL------AELKAINPKV 55
Query: 66 NCLPCIVDIRDEHA-VQSAVNAAVDKFGGIDILVNNA 101
N D+ A + + D+ +DIL+N A
Sbjct: 56 NITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGA 92
Score = 72.3 bits (178), Expect = 1e-14
Identities = 29/181 (16%), Positives = 49/181 (27%), Gaps = 23/181 (12%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
E + + D+ +DIL+N A + + IN G + L +
Sbjct: 70 ESKKLLKKIFDQLKTVDILINGAGILDDHQ--------IERTIAINFTGLVNTTTAILDF 121
Query: 198 LKKSNHAH---ILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNAL 254
K I NI N Y+ SK + +A+ + ++
Sbjct: 122 WDKRKGGPGGIIANICSVTGFNAIHQV--PVYSASKAAVVSFTNSLAKLAPITGVTAYSI 179
Query: 255 WP---RTAIYTAAIEMLTGGSADAKATSR----KPEIMADAAYYILSSNPPSLTGQFLID 307
P RT + L A+ E + +N G
Sbjct: 180 NPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEANK---NGAIWKL 236
Query: 308 D 308
D
Sbjct: 237 D 237
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 86.8 bits (216), Expect = 9e-20
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV 60
MI+ L+G T ITGAS GIG AIA K G+ ++I+ E
Sbjct: 9 MID---LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEE----------KLKSLG 55
Query: 61 EDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
N + ++ ++ + + K +DILV NA
Sbjct: 56 NALKDNYTIEVCNLANK----EECSNLISKTSNLDILVCNA 92
Score = 39.4 bits (93), Expect = 0.001
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 26/128 (20%)
Query: 141 SAVNAAVDKFGGIDILVNNAS------AISLTDTANTPLKKYDLMNQINARGTYLVSQKC 194
+ + K +DILV NA AI + D + +D + IN + ++++++
Sbjct: 73 EECSNLISKTSNLDILVCNAGITSDTLAIRMKD------QDFDKVIDINLKANFILNREA 126
Query: 195 LPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----AEEFKGDN 248
+ + + + I+NIS + + NP Y SK G+ +GM + E
Sbjct: 127 IKKMIQKRYGRIINISSIVGIAGNP----GQANYCASKAGL----IGMTKSLSYEVATRG 178
Query: 249 IAVNALWP 256
I VNA+ P
Sbjct: 179 ITVNAVAP 186
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 87.3 bits (216), Expect = 2e-19
Identities = 57/351 (16%), Positives = 108/351 (30%), Gaps = 97/351 (27%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+TG ++GIG I + + +G +V+ + + A ++++++
Sbjct: 10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVT-------KGHEAVEKLKNSNHE 62
Query: 67 CLPCIV-DIRDEHA-VQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQIN 124
+ D+ D A + S + FG +DILVNNA ++ K +++ I
Sbjct: 63 NVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAG-VAGFSVDADRFKA--MISDIG 119
Query: 125 ARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINA 184
LVK + E Q ++ + + +IN
Sbjct: 120 EDSEELVKIYEKPEAQELMSETYELA--------------------------EECLKINY 153
Query: 185 RGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPF-------------------------- 218
G V++ +P L+ S+ I+N+S +
Sbjct: 154 NGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVN 213
Query: 219 ---------------WFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP---RTAI 260
W AYT SK ++ +A + VN + P +T
Sbjct: 214 MLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTRVLANKIPK--FQVNCVCPGLVKTE- 270
Query: 261 YTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPSLTGQFLIDDEVL 311
+ G + E A+ I +G F E+
Sbjct: 271 -------MNYGIG-----NYTAEEGAEHVVRIALFPDDGPSGFFYDCSELS 309
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 85.7 bits (213), Expect = 2e-19
Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 15/128 (11%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L +TGA+ G+G I ++D + + E + + G
Sbjct: 3 LKKKIAVVTGATGGMGIEIVKDLSRDHI-VYALGRNPE-----------HLAALAEIEG- 49
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
P DI E + V + +D LV+ A+ T + ++ +N
Sbjct: 50 VEPIESDIVKEVLEEGGV-DKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVI 108
Query: 127 GT-YLVKA 133
L +
Sbjct: 109 VPAELSRQ 116
Score = 69.9 bits (172), Expect = 7e-14
Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 13/162 (8%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+ V + +D LV+ A+ T + ++ +N +S++ LP
Sbjct: 62 LEEGGV-DKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPA 120
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPR 257
L+ + ++ I+ P + Y SK+ + A +E + I V+ + P
Sbjct: 121 LRAA-SGCVIYINSGAGNGP--HPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSP- 176
Query: 258 TAIYTAAIEMLTGGSADAKATSR-----KPEIMADAAYYILS 294
T ML G R +P+ +A+A +++
Sbjct: 177 GPTNT---PMLQGLMDSQGTNFRPEIYIEPKEIANAIRFVID 215
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 84.9 bits (211), Expect = 2e-19
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 18/122 (14%)
Query: 10 LTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLP 69
+ + ITGA+ G+G A A G +++++ + A A+ + G LP
Sbjct: 1 MRVLITGATGGLGGAFARALK--GHDLLLSGRRAGA----------LAELAREVGARALP 48
Query: 70 CIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTY 129
D+ DE + A +++ G +D+LV+ + M +
Sbjct: 49 A--DLADELEAK----ALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAA 102
Query: 130 LV 131
V
Sbjct: 103 FV 104
Score = 70.7 bits (174), Expect = 2e-14
Identities = 20/159 (12%), Positives = 39/159 (24%), Gaps = 17/159 (10%)
Query: 142 AVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLKKS 201
A +++ G +D+LV+ + M + V L + +
Sbjct: 56 EAKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFV----LKHARFQ 111
Query: 202 NHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP---RT 258
A + AY +K + +E + + + + T
Sbjct: 112 KGARAVFFGAYPRYVQ--VPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVAT 169
Query: 259 AIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNP 297
L + PE A L P
Sbjct: 170 G--------LWAPLGGPPKGALSPEEAARKVLEGLFREP 200
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 85.5 bits (212), Expect = 2e-19
Identities = 10/129 (7%), Positives = 31/129 (24%), Gaps = 16/129 (12%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
+ + G +G + E +
Sbjct: 2 AASGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE---------------EAS 46
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDT-ANTPLKKYDLMNQ 122
+ ++ +A + +D ++ A + + + + K DLM +
Sbjct: 47 ASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWK 106
Query: 123 INARGTYLV 131
+ + +
Sbjct: 107 QSIWTSTIS 115
Score = 76.6 bits (189), Expect = 4e-16
Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 142 AVNAAVDKFGGIDILVNNASAISLTDT-ANTPLKKYDLMNQINARGTYLVSQKCLPYLKK 200
A + +D ++ A + + + + K DLM + + + + S +LK+
Sbjct: 66 AEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE 125
Query: 201 SNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKG--DNIAVNALWPRT 258
+ L+ + Y ++K + +A + G A A+ P
Sbjct: 126 G--GLLTLAGAKAALDG--TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLP-V 180
Query: 259 AIYTAAIEMLTGGSADAKATSR-KPEIMADAAYYILSSNPPSLTGQFL 305
+ T M +A +S E + + + ++ N +G +
Sbjct: 181 TLDT---PMNRKSMPEADFSSWTPLEFLVETFHDWITGNKRPNSGSLI 225
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 85.7 bits (213), Expect = 3e-19
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED--AG 64
+ G +T S G+G A AL+ A++GA +++ ++ E + +AA + +G
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNRE-------KLEAAASRIASLVSG 57
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
DIR+ + GG DILV +
Sbjct: 58 AQVDIVAGDIREPGDIDRLF-EKARDLGGADILVYST 93
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 87.3 bits (217), Expect = 6e-19
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
L G +TGA+RGIG IA A+DGA +V + G + + GG
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAID--------VDGAAEDLKRVADKVGGT 262
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGG-IDILVNNA 101
L D+ + AV + GG +DILVNNA
Sbjct: 263 ALTL--DVTADDAVDKITAHVTEHHGGKVDILVNNA 296
Score = 38.8 bits (91), Expect = 0.003
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 106 LTDTANTPLKKYDLMNQINARGTYLVKASQGLEIQSAVNAAVDKFGG-IDILVNNASAIS 164
D + +++ + + + + GG +DILVNNA
Sbjct: 242 AIDVDGAAEDLKRVADKVGGTA-LTLDVTADDAVDKITAHVTEHHGGKVDILVNNA---G 297
Query: 165 LT-DT--ANTPLKKYDLMNQINARGTYLVSQKCLPYLKKSNHAHILNIS 210
+T D AN K++D + +N +++ + ++ +S
Sbjct: 298 ITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLS 346
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 87.5 bits (217), Expect = 8e-19
Identities = 68/302 (22%), Positives = 106/302 (35%), Gaps = 71/302 (23%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
G +TGA G+G+ AL A+ GA +V V D GG
Sbjct: 17 YDGRVAVVTGAGAGLGREYALLFAERGAKVV----------------------VNDLGGT 54
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
R V + A GG + A S+ D
Sbjct: 55 HSGDGASQRAADIVVDEIRKA----GGEAV----ADYNSVIDG----------------- 89
Query: 127 GTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARG 186
+ A+ FG +DILVNNA + T + ++L+N ++ +G
Sbjct: 90 -------------AKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKG 136
Query: 187 TYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNH--VAYTISKYGMSMCALGMAEEF 244
++ +Q PY+KK N+ I+ S + + N V YT +K G+ A +A E
Sbjct: 137 SFKCTQAAFPYMKKQNYGRIIMTSSNSGI----YGNFGQVNYTAAKMGLIGLANTVAIEG 192
Query: 245 KGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPSLTGQF 304
+N+ N + P TAA M G D KP+++A Y+ +
Sbjct: 193 ARNNVLCNVIVP-----TAASRMTEGILPDILFNELKPKLIAPVVAYLCHESCEDNGSYI 247
Query: 305 LI 306
Sbjct: 248 ES 249
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 84.7 bits (210), Expect = 9e-19
Identities = 61/318 (19%), Positives = 116/318 (36%), Gaps = 60/318 (18%)
Query: 8 SGLTIFITGASRGIGKAIALK-AAKDGANIVIAA---KTAEPHPKLPGTIYSAAKEVEDA 63
+TG ++GIG AI ++V+ A + +A ++++
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQ----------AAVQQLQAE 52
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLK-KYDLMNQ 122
G + +DI D ++++ + ++GG+D+LVNNA I+ TP + ++ +
Sbjct: 53 GLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNA-GIAFKVADPTPFHIQAEVTMK 111
Query: 123 INARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQI 182
N GT V + +VN +S +S+ + +
Sbjct: 112 TNFFGTRDV-----------CTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 160
Query: 183 NARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAE 242
++++ L L P AY ++K G+++ + A
Sbjct: 161 T------ITEEELVGLMNKFVEDTKKGVHQKEGWPSS-----AYGVTKIGVTVLSRIHAR 209
Query: 243 EF----KGDNIAVNALWP---RTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYY--IL 293
+ KGD I +NA P RT + G A ++ PE A+ Y +L
Sbjct: 210 KLSEQRKGDKILLNACCPGWVRTD--------MAGPKA-----TKSPEEGAETPVYLALL 256
Query: 294 SSNPPSLTGQFLIDDEVL 311
+ GQF+ + V
Sbjct: 257 PPDAEGPHGQFVSEKRVE 274
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 83.7 bits (208), Expect = 1e-18
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 14 ITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPCIVD 73
+TG SRGIG+AIA G + IA++ E + + G LP ++
Sbjct: 7 VTGGSRGIGRAIAEALVARGYRVAIASRNPE-------------EAAQSLGAVPLPTDLE 53
Query: 74 IRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLV 131
D + V A++ GG+ +LV+ A+ +++ + ++ +L+
Sbjct: 54 KDD---PKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLL 108
Score = 72.9 bits (180), Expect = 6e-15
Identities = 23/119 (19%), Positives = 50/119 (42%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPY 197
+ + V A++ GG+ +LV+ A+ +++ + ++ +L++Q P+
Sbjct: 56 DPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPH 115
Query: 198 LKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP 256
+ ++ +L I AYT +K + +A+E+ I VN L P
Sbjct: 116 MAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCP 174
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 84.7 bits (210), Expect = 1e-18
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVI--AAKTAEPHPKLPGTIYSAAK 58
M + + G + +TGA G+G+A AL A+ GA +V+ + K +
Sbjct: 1 MASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVE 60
Query: 59 EVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYD 118
E+ GG + + + V A+D FG ID++VNNA + + + +D
Sbjct: 61 EIRRRGGKAVANYDSVEA---GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWD 117
Query: 119 LMNQINARGTYLV 131
++ +++ RG++ V
Sbjct: 118 IIQRVHLRGSFQV 130
Score = 70.5 bits (173), Expect = 1e-13
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 140 QSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLK 199
+ V A+D FG ID++VNNA + + + +D++ +++ RG++ V++ ++K
Sbjct: 80 EKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMK 139
Query: 200 KSNHAHILNISPPLNLNPFWFKNH--VAYTISKYGMSMCALGMAEEFKGDNIAVNALWPR 257
K N+ I+ + + + N Y+ +K G+ A + E + +NI N + P
Sbjct: 140 KQNYGRIIMTASASGI----YGNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAP- 194
Query: 258 TAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPSLTGQFL 305
A M + + KPE +A + L G
Sbjct: 195 ----NAGSRMTETVMPEDLVEALKPEYVAPLVLW-LCHESCEENGGLF 237
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 83.4 bits (207), Expect = 2e-18
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 4 TGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDA 63
++ +TG +RGIG AIA + A DG + + +
Sbjct: 10 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAV----------------THRGSGAPK 53
Query: 64 GGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
G + D+ D AV A A + G +++LV+NA
Sbjct: 54 GLFGVEV--DVTDSDAVDRAFTAVEEHQGPVEVLVSNA 89
Score = 41.8 bits (99), Expect = 2e-04
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 26/136 (19%)
Query: 133 ASQGLEIQSAVNAAVDKFGGIDILVNNAS------AISLTDTANTPLKKYDLMNQINARG 186
+ + A A + G +++LV+NA + +T+ +K++ + N G
Sbjct: 62 VTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTE------EKFEKVINANLTG 115
Query: 187 TYLVSQKCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM---- 240
+ V+Q+ ++++ ++ I L N Y SK G+ +GM
Sbjct: 116 AFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIG----NQANYAASKAGV----IGMARSI 167
Query: 241 AEEFKGDNIAVNALWP 256
A E N+ N + P
Sbjct: 168 ARELSKANVTANVVAP 183
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 83.0 bits (206), Expect = 2e-18
Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 19/160 (11%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
++ +TG + G+G A + GA +V+ E V D G
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE-------------DVVADLGD 52
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA----SAISLTDTANTPLKKYDLMN 121
D+ DE AV SA+ + G + I+VN A + L+ L + +
Sbjct: 53 RARFAAADVTDEAAVASAL-DLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIV 111
Query: 122 QINARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNAS 161
IN G++ V E + +++N AS
Sbjct: 112 DINLVGSFNV-LRLAAERIAKTEPVGPNAEERGVIINTAS 150
Score = 39.9 bits (94), Expect = 7e-04
Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 51/198 (25%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNA----SAISLTDTANTPLKKYDLMNQINARGTYLVSQK 193
+ SA+ + G + I+VN A + L+ L + + IN G++ V +
Sbjct: 66 AVASAL-DLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRL 124
Query: 194 CLPYLKKSNHAH--------ILNISPPLNLNPFWFKNHVA----------YTISKYGMSM 235
+ K+ I+N + VA Y+ SK G+
Sbjct: 125 AAERIAKTEPVGPNAEERGVIINTAS------------VAAFDGQIGQAAYSASKGGVVG 172
Query: 236 CALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKAT--------SR--KPEIM 285
L +A + I V + P T +L +A+A+ SR P+
Sbjct: 173 MTLPIARDLASHRIRVMTIAPGL-FDT---PLLASLPEEARASLGKQVPHPSRLGNPDEY 228
Query: 286 ADAAYYILSSNPPSLTGQ 303
A +I+ + P L G+
Sbjct: 229 GALAVHIIEN--PMLNGE 244
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 82.2 bits (204), Expect = 4e-18
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 18/95 (18%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
++ +TG +RGIG AIA A G + I + G
Sbjct: 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAI----------------TYRSGEPPEGFL 62
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+ C DI D V+ A + G +++L+ NA
Sbjct: 63 AVKC--DITDTEQVEQAYKEIEETHGPVEVLIANA 95
Score = 41.4 bits (98), Expect = 2e-04
Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 24/130 (18%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPL-----KKYDLMNQINARGTYLVSQ 192
+++ A + G +++L+ NA + T + L + + + + N GT+ V +
Sbjct: 73 QVEQAYKEIEETHGPVEVLIANA-GV----TKDQLLMRMSEEDFTSVVETNLTGTFRVVK 127
Query: 193 KCLPYLKKSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGM----AEEFKG 246
+ + ++ ++ IS + L + Y SK G+ +G A E
Sbjct: 128 RANRAMLRAKKGRVVLISSVVGLLGSA----GQANYAASKAGL----VGFARSLARELGS 179
Query: 247 DNIAVNALWP 256
NI N + P
Sbjct: 180 RNITFNVVAP 189
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 80.8 bits (200), Expect = 1e-17
Identities = 15/126 (11%), Positives = 40/126 (31%), Gaps = 16/126 (12%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+S + + G +G AI K+G ++ +A +
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND---------------QADSNI 45
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNAS-AISLTDTANTPLKKYDLMNQINA 125
+ + ++ A+ + +D + A + ++ +K DLM + +
Sbjct: 46 LVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSV 105
Query: 126 RGTYLV 131
+ +
Sbjct: 106 WSSAIA 111
Score = 73.5 bits (181), Expect = 4e-15
Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 10/157 (6%)
Query: 142 AVNAAVDKFGGIDILVNNAS-AISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLKK 200
A+ + +D + A + ++ +K DLM + + + + ++ +LK
Sbjct: 62 EQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP 121
Query: 201 SNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKG--DNIAVNALWPRT 258
+ + P + + Y ++K + +A + G DN AV + P
Sbjct: 122 G--GLLQLTGAAAAMGP--TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMP-V 176
Query: 259 AIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSS 295
+ T + + T +++ +
Sbjct: 177 TLDTPMNRKWMPNADHSSWT--PLSFISEHLLKWTTE 211
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 82.8 bits (205), Expect = 3e-17
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEV----ED 62
+ ITGA G+GK +L+ AK GA +V+ + + G AA V
Sbjct: 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQ--GGNSKAADVVVDEIVK 63
Query: 63 AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQ 122
GG + ++ D V AV FG + +++NNA + K Y L+
Sbjct: 64 NGGVAVADYNNVLD---GDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVID 120
Query: 123 INARGTYLV 131
++ G + V
Sbjct: 121 VHLNGAFAV 129
Score = 76.3 bits (188), Expect = 4e-15
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 1 MINTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIA-AKTAEPHPKLPGTIYSAAKE 59
T L + ITGA G+GK A AK GA +V+ K A E
Sbjct: 314 GAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDAT----------KTVDE 363
Query: 60 VEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDL 119
++ AGG P D+ + ++ + +DK+G IDILVNNA + A +++D
Sbjct: 364 IKAAGGEAWPDQHDVAKD--SEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDS 421
Query: 120 MNQINARGTYLV 131
+ Q++ GT+ +
Sbjct: 422 VQQVHLIGTFNL 433
Score = 73.2 bits (180), Expect = 4e-14
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 140 QSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLK 199
++ + +DK+G IDILVNNA + A +++D + Q++ GT+ +S+ PY
Sbjct: 383 EAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFV 442
Query: 200 KSNHAHILNISPPLNL--NPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPR 257
+ I+NI+ + N Y+ SK G+ + MA E +NI VN + P
Sbjct: 443 EKQFGRIINITSTSGIYGNF----GQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAP- 497
Query: 258 TAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPSLTGQFL 305
A M + + +A Y L ++ +TG+
Sbjct: 498 ----HAETAMTLSIMREQDKNLYHADQVAPLLVY-LGTDDVPVTGETF 540
Score = 71.3 bits (175), Expect = 2e-13
Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 140 QSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLK 199
V AV FG + +++NNA + K Y L+ ++ G + V++ PY +
Sbjct: 79 DKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQ 138
Query: 200 KSNHAHILNISPPLNLNPFWFKNH--VAYTISKYGMSMCALGMAEEFKGDNIAVNALWPR 257
K + I+N S P L + N Y +K + A +A+E NI NA+ P
Sbjct: 139 KQKYGRIVNTSSPAGL----YGNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAP- 193
Query: 258 TAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPSLTGQFL 305
A M PE +A Y LSS LTGQF
Sbjct: 194 ----LARSRMTESIMPPPMLEKLGPEKVAPLVLY-LSSAENELTGQFF 236
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 79.1 bits (196), Expect = 4e-17
Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 25/152 (16%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
I ITGAS G+G +A +G + ++ KL + + + G
Sbjct: 3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSES---KL----STVTNCLSNNVG-YRAR 54
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARG-TY 129
D+ V+ +V++A + ++ + + N
Sbjct: 55 --DLASHQEVEQLFEQL---DSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAIN 109
Query: 130 LVKASQGLEIQSAVNAAVDKFGGIDILVNNAS 161
+++ V D+ + V S
Sbjct: 110 VLRE--------LVKRYKDQPVNV---VMIMS 130
Score = 63.7 bits (156), Expect = 8e-12
Identities = 20/161 (12%), Positives = 51/161 (31%), Gaps = 13/161 (8%)
Query: 141 SAVNAAVDKFGG-IDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLK 199
V ++ +V++A + ++ + + N V ++ + K
Sbjct: 60 QEVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYK 119
Query: 200 KSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWP--- 256
+++ I P Y K+ + + E KG + + A++P
Sbjct: 120 DQP-VNVVMIMSTAAQQP--KAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGM 176
Query: 257 RTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNP 297
T + + G + ++ E A + L++
Sbjct: 177 ATEFWETS------GKSLDTSSFMSAEDAALMIHGALANIG 211
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 76.9 bits (190), Expect = 3e-16
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 24/125 (19%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
+ +TG + G+G+A AL G +V+ ++ G + +
Sbjct: 4 SALVTGGASGLGRAAALALKARGYRVVVL-------------------DLRREGEDLIYV 44
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNA----SAISLTDTANTPLKKYDLMNQINAR 126
D+ E V+ AV A + + +V+ A + L L+ + + ++N
Sbjct: 45 EGDVTREEDVRRAVARAQE-EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLL 103
Query: 127 GTYLV 131
GT+ V
Sbjct: 104 GTFNV 108
Score = 40.7 bits (96), Expect = 4e-04
Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 33/188 (17%)
Query: 138 EIQSAVNAAVDKFGGIDILVNNA----SAISLTDTANTPLKKYDLMNQINARGTYLVSQK 193
+++ AV A + + +V+ A + L L+ + + ++N GT+ V +
Sbjct: 53 DVRRAVARAQE-EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRL 111
Query: 194 CLPYLKKSNHAH------ILNISPPLNLNPFWFKN--HVAYTISKYGMSMCALGMAEEFK 245
++++ I+N + AY SK G+ L A E
Sbjct: 112 AAWAMRENPPDAEGQRGVIVNTASVAAFEG----QIGQAAYAASKGGVVALTLPAARELA 167
Query: 246 GDNIAVNALWPRTAIYTAAIEMLTGGSADAKAT--------SR--KPEIMADAAYYILSS 295
G I V + P T +L G AKA+ R +PE A +IL +
Sbjct: 168 GWGIRVVTVAPGL-FDT---PLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILEN 223
Query: 296 NPPSLTGQ 303
P L G+
Sbjct: 224 --PMLNGE 229
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 76.6 bits (189), Expect = 3e-16
Identities = 53/306 (17%), Positives = 100/306 (32%), Gaps = 80/306 (26%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
++ +TGA+RGIG + + KD I A + A E++ + +
Sbjct: 5 SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV---------EKATELKSIKDSRVHV 55
Query: 71 I-VDIRDEHAVQSAVNAAVDKFG--GIDILVNNASAISLTDTANTPLKKYDLMN--QINA 125
+ + + + ++ + V+ + G G+ +L+NNA + L+ NT + + +N
Sbjct: 56 LPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNA-GVLLSYGTNTEPNRAVIAEQLDVNT 114
Query: 126 RGTYLV-KASQGLEIQSAVNAAVDKFGGIDILVNNASAI--SLTDTANTPLKKYDLMNQI 182
L+ + L +A + D+ V S+ S+TD
Sbjct: 115 TSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD--------------- 159
Query: 183 NARGTYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAE 242
N + +AY +SK ++M +A
Sbjct: 160 -------------------------------NTSGSAQFPVLAYRMSKAAINMFGRTLAV 188
Query: 243 EFKGDNIAVNAL---WPRTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPS 299
+ K DN+ V W +T L G +A E + S
Sbjct: 189 DLKDDNVLVVNFCPGWVQTN--------LGGKNAA-----LTVEQSTAELISSFNKLDNS 235
Query: 300 LTGQFL 305
G+F
Sbjct: 236 HNGRFF 241
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 76.2 bits (188), Expect = 5e-16
Identities = 40/294 (13%), Positives = 78/294 (26%), Gaps = 75/294 (25%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
I I+G + GIG A G IV + DA
Sbjct: 3 IIVISGCATGIGAATRKVLEAAGHQIVGID-------------------IRDAEVIA--- 40
Query: 71 IVDIRDEHAVQSAVNAAVDK-FGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTY 129
D+ + A+ + K G+D LV A T + +N G
Sbjct: 41 --DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVL-------GNVVSVNYFGAT 91
Query: 130 LVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYL 189
+ + ++ A V +S +
Sbjct: 92 ELMDAFLPALKKGHQPAA---------VVISSV-----------------------ASAH 119
Query: 190 VSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNI 249
++ P + ++AY SK +++ A + +
Sbjct: 120 LAFDKNPLALALEAGEEAKARAIVEHAGE-QGGNLAYAGSKNALTVAVRKRAAAWGEAGV 178
Query: 250 AVNALWPRTAIYTAAIEMLTGGSADAKATSR---------KPEIMADAAYYILS 294
+N + P A T ++ ++ ++ +P MA +++S
Sbjct: 179 RLNTIAP-GATETPLLQAGLQDPRYGESIAKFVPPMGRRAEPSEMASVIAFLMS 231
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 75.1 bits (185), Expect = 1e-15
Identities = 53/319 (16%), Positives = 97/319 (30%), Gaps = 107/319 (33%)
Query: 11 TIFITGASRGIGKAIA---LKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNC 67
+I ITG +RG+G + L + ++ + E +L +++ N
Sbjct: 23 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL--------EDLAKNHSNI 74
Query: 68 LPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARG 127
+D+R+ A + V
Sbjct: 75 HILEIDLRNF----DAYDKLVADI------------------------------------ 94
Query: 128 TYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMN--QINAR 185
V K G+++L NNA I+ T ++ +L++ Q N
Sbjct: 95 -----------------EGVTKDQGLNVLFNNA-GIAPKSARITAVRSQELLDTLQTNTV 136
Query: 186 GTYLVSQKCLPYLKKS-----------NHAHILNISPPL-----NLNPFWFKNHVAYTIS 229
++++ CLP LKK+ A I+N+S L N + + AY S
Sbjct: 137 VPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMY----AYRTS 192
Query: 230 KYGMSMCALGMAEEFKGDNIAVNAL---WPRTAIYTAAIEMLTGGSADAKATSRKPEIMA 286
K ++ ++ + I +L W +T + G SA
Sbjct: 193 KSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD--------MGGSSAP-----LDVPTST 239
Query: 287 DAAYYILSSNPPSLTGQFL 305
+S G F+
Sbjct: 240 GQIVQTISKLGEKQNGGFV 258
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 74.9 bits (185), Expect = 2e-15
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 22/95 (23%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+ + + ASRGIG+A+A +++GA + I A+ E ++ +G
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE--------------LLKRSGHR 62
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+ C D+R ++ +K +DILV NA
Sbjct: 63 YVVC--DLRK------DLDLLFEKVKEVDILVLNA 89
Score = 53.7 bits (130), Expect = 2e-08
Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 31/205 (15%)
Query: 123 INARGTYLVKASQG----LEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDL 178
I AR L+K S +++ ++ +K +DILV NA + +
Sbjct: 48 ICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKE 107
Query: 179 MNQINARGTYLVSQKCLPYLKKSNHAHILNIS--------PPLNLNPFWFKNHVAYTISK 230
+ + LP +K+ I+ I+ L ++
Sbjct: 108 AIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYT----------SNSAR 157
Query: 231 YGMSMCALGMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR-------KPE 283
++ ++ E I VN + P T ++ L + S+ KPE
Sbjct: 158 MALTGFLKTLSFEVAPYGITVNCVAP-GWTETERVKELLSEEKKKQVESQIPMRRMAKPE 216
Query: 284 IMADAAYYILSSNPPSLTGQ-FLID 307
+A ++ S LTGQ ++D
Sbjct: 217 EIASVVAFLCSEKASYLTGQTIVVD 241
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 73.1 bits (180), Expect = 3e-15
Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 29/124 (23%)
Query: 8 SGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNC 67
+ + I + GAS +G A+ + K A ++ A + +
Sbjct: 2 NAMKILLIGASGTLGSAVKERLEK-KAEVITAGRHSGDVT-------------------- 40
Query: 68 LPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARG 127
VDI + +++ ++ G +D +V+ + + + +K + G
Sbjct: 41 ----VDITNIDSIK----KMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGG 92
Query: 128 TYLV 131
+
Sbjct: 93 QINL 96
Score = 72.3 bits (178), Expect = 5e-15
Identities = 19/162 (11%), Positives = 50/162 (30%), Gaps = 12/162 (7%)
Query: 142 AVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYLVSQKCLPYLKKS 201
++ ++ G +D +V+ + + + +K + G + + L
Sbjct: 48 SIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND- 106
Query: 202 NHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKGDNIAVNALWPRTAIY 261
+ + +P + ++ ++ A A E I +N + P +
Sbjct: 107 -KGSFTLTTGIMMEDP--IVQGASAAMANGAVTAFAKSAAIEM-PRGIRINTVSP-NVLE 161
Query: 262 TAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPSLTGQ 303
+ ++ + P A A S + TG+
Sbjct: 162 ESWDKL------EPFFEGFLPVPAAKVARAFEKSVFGAQTGE 197
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 75.1 bits (185), Expect = 3e-15
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 11 TIFITGASRGIGKAIALKAAKDGAN--IVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCL 68
+ ITG S GIG +A++ A D + V A T K G ++ AA+ + G+
Sbjct: 4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYA--TLR-DLKTQGRLWEAARALACPPGSLE 60
Query: 69 PCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+D+RD +V +A + G +D+LV NA
Sbjct: 61 TLQLDVRDSKSVAAARERVTE--GRVDVLVCNA 91
Score = 46.6 bits (111), Expect = 7e-06
Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 27/174 (15%)
Query: 139 IQSAVNAAVDKFGGIDILVNNA-----SAISLTDTANTPLKKYDLMNQ--INARGTYLVS 191
+ +A + G +D+LV NA + + + +N GT +
Sbjct: 72 VAAARERVTE--GRVDVLVCNAGLGLLGPLEALGED-------AVASVLDVNVVGTVRML 122
Query: 192 QKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKY---GMSMCALGMAEEFKGDN 248
Q LP +K+ +L L F + Y SK+ G+ +A
Sbjct: 123 QAFLPDMKRRGSGRVLVTGSVGGLMGLPFND--VYCASKFALEGLCES---LAVLLLPFG 177
Query: 249 IAVNALWP---RTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPPS 299
+ ++ + TA + + A +
Sbjct: 178 VHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQ 231
>3bkr_A Sterol carrier protein-2 like-3; mosquito, fatty acid, palmitic
acid, cholesterol, lipid binding protein; HET: PLM;
1.40A {Aedes aegypti} PDB: 3bks_A*
Length = 126
Score = 69.7 bits (170), Expect = 7e-15
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 326 NGAAEGSWHIDLKTGSGSSGR-------GKPSSTVDATLTMTEKNFIALFEGKLKPTSAF 378
G S +D S P+ +DA++T+ + +F + + +
Sbjct: 43 EGKVVRSVVLDFNDLKISEIELAVTSTADYPAERIDASITIDDNDFYLVATKETSFAALI 102
Query: 379 MTGKLKISGNLQKAMKLEKL 398
GK+ I+GN Q + L++
Sbjct: 103 EQGKVDITGNKQAFLTLDEK 122
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 61.9 bits (151), Expect = 6e-11
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+ T+ ITGA+ G+G A + A+ GA +++A + G
Sbjct: 14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTR----------KGEAAARTMAGQ 63
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNA 101
+D++D S+V D G D+L+NNA
Sbjct: 64 VEVRELDLQD----LSSVRRFADGVSGADVLINNA 94
Score = 31.4 bits (72), Expect = 0.50
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 143 VNAAVDKFGGIDILVNNA 160
V D G D+L+NNA
Sbjct: 77 VRRFADGVSGADVLINNA 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 3e-09
Identities = 61/369 (16%), Positives = 111/369 (30%), Gaps = 129/369 (34%)
Query: 57 AKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKF-GGIDILVNNASAISLTDTANTPL- 114
+ VE + + + + + + + G DI +A A L +T L
Sbjct: 69 SSLVEPSKVG--------QFDQVLNLCLTEFENCYLEGNDI---HALAAKLLQENDTTLV 117
Query: 115 KKYDLM-NQINARGTYLVKASQGLEIQSAVNAAVDK--------FGG------------- 152
K +L+ N I AR + K + SA+ AV + FGG
Sbjct: 118 KTKELIKNYITARI--MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 153 --------IDILVNNASAI--SLTDTANTPLKKY----DLMNQINARGT-----YL---- 189
+ L+ ++ L T K + +++ + YL
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 190 VSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMC------ALGMA-- 241
+S P + AH + + L P ++++ G + A+ +A
Sbjct: 236 IS---CPLIGVIQLAHYVVTAKLLGFTPGELRSYLK------GATGHSQGLVTAVAIAET 286
Query: 242 ---EEFKGDNIAVNAL----W---------PRTAIYTAAIE------------ML--TGG 271
E F A+ + P T++ + +E ML +
Sbjct: 287 DSWESF--FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 272 SAD------AKATSRKPEIMADAAY---------YILSSNPPSLTGQFLIDDEVLKAQHI 316
+ + K S P ++S P SL G + KA
Sbjct: 345 TQEQVQDYVNKTNSHLPA--GKQVEISLVNGAKNLVVSGPPQSLYG-LNLTLRKAKAPS- 400
Query: 317 DLEQYSYVP 325
L+Q S +P
Sbjct: 401 GLDQ-SRIP 408
Score = 55.4 bits (133), Expect = 2e-08
Identities = 73/352 (20%), Positives = 116/352 (32%), Gaps = 110/352 (31%)
Query: 2 INTGKLSGLT------IF--ITGASRGIGKAIALKAAKDGAN--------------IVIA 39
+ T KL G T TG S+G+ A+A+ + I +
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 40 AKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC----IVDIRDEHAVQSAV---NAAVDKFG 92
A P+ LP +I + E +P I ++ E VQ V N+ +
Sbjct: 310 CYEAYPNTSLPPSILEDSLE----NNEGVPSPMLSISNLTQEQ-VQDYVNKTNSHLPAGK 364
Query: 93 GIDI-LVNNASAISLTDTANTPLKKYDLMNQINARGTYLVKASQGLEIQSAVNAAVDKFG 151
++I LVN A + ++ P Y L + R KA GL+ QS + F
Sbjct: 365 QVEISLVNGAKNLVVS---GPPQSLYGLNLTL--RK---AKAPSGLD-QSRI-----PFS 410
Query: 152 GIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYL-VSQKCLPYLKKSNHAHILNIS 210
+K N+ +L V+ P+ H+H+L +
Sbjct: 411 E---------------------RKLKFSNR------FLPVA---SPF-----HSHLLVPA 435
Query: 211 PPLNLNPFWFKNHVAYTISK-----Y----GMSMCAL-GMAEEFKGDNIAVNAL-WPRTA 259
L KN+V++ Y G + L G E D I + W T
Sbjct: 436 SDLINKDLV-KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 260 IYTA--AIEMLTGGSAD-AKATSRKPE------IMADAAYYILSSNPPSLTG 302
+ A ++ GG++ T R + I+A L NP G
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT----LDINPDDDYG 542
Score = 43.9 bits (103), Expect = 9e-05
Identities = 37/248 (14%), Positives = 67/248 (27%), Gaps = 75/248 (30%)
Query: 10 LTIFITGA-SRGIGK---AIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
LTI G + I + A+ + DG + E + + + K + A
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDG-KLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 66 NCLPCIVDIRDEHAVQSAVNAAVDKFGGIDI--------------LVNNASAISLTDTAN 111
P + ++ A + G I L + A +S+
Sbjct: 1731 FTQPALT------LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV- 1783
Query: 112 TPLKKYDLMNQINARGTYLVKASQGLEIQS------AVN--AAVDKFG--GIDILVNNAS 161
++ + RG + A E+ A+N F + +V
Sbjct: 1784 ------EV---VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 162 AIS--LTDTANTPLKKYDLMNQINARG-TYLVS---------QKCLPYLKKSNHAHI--- 206
+ L + N Y N Y+ + L ++K I
Sbjct: 1835 KRTGWLVEIVN-----Y------NVENQQYVAAGDLRALDTVTNVLNFIKLQK---IDII 1880
Query: 207 -LNISPPL 213
L S L
Sbjct: 1881 ELQKSLSL 1888
Score = 38.5 bits (89), Expect = 0.004
Identities = 34/162 (20%), Positives = 51/162 (31%), Gaps = 49/162 (30%)
Query: 239 GMAEEFKGDNIAVNALWPRTAIYTAAIEMLTGGSADAKATSRKPEIMADAAYYILSSNPP 298
GM + + A +W R AD + D I+ +NP
Sbjct: 1630 GMGMDLYKTSKAAQDVWNR---------------ADNHFKDTYGFSILD----IVINNPV 1670
Query: 299 SLTGQFLIDDEVLKAQHIDLEQY-SYVPNGAAEGSWH-------IDLKTGSGSSGRGKPS 350
+LT F K + I E Y + + +G I+ + + + R
Sbjct: 1671 NLTIHF----GGEKGKRIR-ENYSAMIFETIVDGKLKTEKIFKEINEHS-TSYTFRS-EK 1723
Query: 351 STVDAT------LTMTEKNFIALFE-----GKLKPTSAFMTG 381
+ AT LT+ E A FE G L P A G
Sbjct: 1724 GLLSATQFTQPALTLME---KAAFEDLKSKG-LIPADATFAG 1761
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 53.7 bits (129), Expect = 3e-08
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 15/97 (15%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+ G + + +G A A +GA +V+ + + AA V
Sbjct: 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQA-------AADSVNKRFKV 169
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASA 103
+ + D+ + AV A + +
Sbjct: 170 NV-TAAETADDASRAEAVKGA-------HFVFTAGAI 198
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A
{Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB:
2cfz_A* 2cg2_A 2cg3_A*
Length = 658
Score = 50.8 bits (120), Expect = 5e-07
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 332 SWHIDLKTGSGSSGRGKPSSTVDATLTMTEKNFIALFEGKLKPTSAFMTGKLKISGNLQK 391
++ ++LK ++ RG S T+++ + L ++ GKLK SGN
Sbjct: 573 NYLLELKNSHLNNLRGVQSEDAGQTVSIDRADLNRLLLKEVSAVRLVFEGKLKSSGN--- 629
Query: 392 AMKLEKLMGAL 402
+ L +L G L
Sbjct: 630 PLLLGQLFGML 640
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase
fold; 2.70A {Pseudomonas SP}
Length = 668
Score = 49.3 bits (116), Expect = 1e-06
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 332 SWHIDLKTGSGSSGRGKPSSTVDATLTMTEKNFIALFEGKLKPTSAFMTGKLKISGNLQK 391
+ L+ G + G + D T+ +T+ + KL +A G +K+ G+
Sbjct: 582 DIALTLRNGVLTQRVGSLNPKADVTVKLTKPTLDQIAARKLDLPTAIKQGTVKLDGD--- 638
Query: 392 AMKLEKLMGAL 402
KL + G L
Sbjct: 639 GKKLGEFFGLL 649
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 42.8 bits (100), Expect = 1e-04
Identities = 47/320 (14%), Positives = 91/320 (28%), Gaps = 38/320 (11%)
Query: 14 ITGASRGIGKAIALKAA-KDGANIVIAAKTAEPHPKLPGTI-----YSAAKEVEDAGGNC 67
+ GAS G G A + AA GA+ + GT + K + AG
Sbjct: 66 VIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYS 125
Query: 68 LPCIVDIRDEHAVQSAVNAAVDKFGG-IDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
D + A + + GG +D++V + ++ + +K+ L
Sbjct: 126 KSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTY 185
Query: 127 GTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARG 186
+ ++ IQ+++ A + I V L A L+ ++
Sbjct: 186 TATAIDTNKDTIIQASIEPASAQEIEDTITVMGGQDWELWIDA---LEGAGVL------- 235
Query: 187 TYLVSQKCLPYLKKSNHAHILNISPPLNLNPFWFKNHVAYTISKYGMSMCALGMAEEFKG 246
++ A + S + H A +K + A +
Sbjct: 236 --------------ADGARSVAFSYIGTEITWPIYWHGALGKAKVDLDRTAQRLNARLAK 281
Query: 247 DNIAVNALWPRTAIYTAAIEMLTGGSADAKATSR------KPEIMADAAYYILSSNPPSL 300
N + ++ T A + + E + +
Sbjct: 282 HGGGANVAVLK-SVVTQASAAIPVMPLYISMVYKIMKEKGLHEGTIEQLDRLFRERLYRQ 340
Query: 301 TGQFLIDDEVLKAQHIDLEQ 320
GQ DE + + D E
Sbjct: 341 DGQPAEVDEQNRLRLDDWEL 360
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 40.8 bits (95), Expect = 5e-04
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 6/117 (5%)
Query: 9 GLTIFITGASRGIGKAIALKAA-KDGANIVIAAKTAEPHPKLPGTIYSAA-----KEVED 62
+ + GAS G G A + AA GA+ + PGT K
Sbjct: 47 PKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQ 106
Query: 63 AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDL 119
G D + Q ++A G +D ++ + ++ T + L
Sbjct: 107 KGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSAL 163
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 37.2 bits (87), Expect = 0.006
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 4 TGKLSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI--AAKTAEPHPKLPGTIYSAAKE 59
L G I + G A+ R I IA + GA ++ A + E ++ A
Sbjct: 2 NFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKS------VHELAGT 55
Query: 60 VEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILV 98
++ LPC D+ ++ +++ + ++ G I +
Sbjct: 56 LDRNDSIILPC--DVTNDAEIETCFASIKEQVGVIHGIA 92
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 35.8 bits (83), Expect = 0.016
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 38/140 (27%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
+ +TGA+ +G+ + + A + +A + ++ AG N
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADLSP----------------LDPAGPNEECV 48
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYL 130
D+ D +AV + V G D +V+ IS+ L Q N G Y
Sbjct: 49 QCDLADANAVNAMVA-------GCDGIVHLG-GISVEKPFEQIL-------QGNIIGLYN 93
Query: 131 VKASQGLEIQSAVNAAVDKF 150
+ ++A +
Sbjct: 94 L-------YEAARAHGQPRI 106
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 35.7 bits (83), Expect = 0.017
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 20/102 (19%)
Query: 5 GKLSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI------AAKTAEPHPKLPGTIYSA 56
L T I G A+ R I +A + GA +V + K E
Sbjct: 28 VNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEK----------L 77
Query: 57 AKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILV 98
+++ + D++ + V + G ID +
Sbjct: 78 LEQLNQPEAHLYQI--DVQSDEEVINGFEQIGKDVGNIDGVY 117
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 34.6 bits (80), Expect = 0.032
Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 43/177 (24%)
Query: 3 NTGKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVED 62
G+ + + GA+ + + + + G V + E P+L A ++
Sbjct: 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER---GASDIVV 71
Query: 63 AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQ 122
A ++ + + A ID +V A + T T
Sbjct: 72 A---------NLEE------DFSHAFA---SIDAVVFAAGSGPHTGADKT--------IL 105
Query: 123 INARGTYLVKASQGLEIQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLM 179
I+ G IQ A + +F I+V S++ D P+ +
Sbjct: 106 IDLWGAIKT-------IQEAEKRGIKRF----IMV---SSVGTVDPDQGPMNMRHYL 148
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 34.2 bits (79), Expect = 0.069
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 22/106 (20%)
Query: 1 MINTGKLSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI------AAKTAEPHPKLPGT 52
M + G I G A+ + + IA GA + + K +P
Sbjct: 22 MRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDP------- 74
Query: 53 IYSAAKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILV 98
A+ + +PC D+ D +V + +++G +D +V
Sbjct: 75 ---LAESLGVK--LTVPC--DVSDAESVDNMFKVLAEEWGSLDFVV 113
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 33.7 bits (77), Expect = 0.085
Identities = 31/142 (21%), Positives = 42/142 (29%), Gaps = 21/142 (14%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
T+ +TGAS G+ + K + V + E GG
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA------------QGKEKIGGEADVF 53
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGTYL 130
I DI D ++ A F GID LV SA+ P K
Sbjct: 54 IGDITDADSINPA-------FQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPE 106
Query: 131 VKASQGLE--IQSAVNAAVDKF 150
G + I +A A V
Sbjct: 107 QVDWIGQKNQIDAAKVAGVKHI 128
>2cx7_A Sterol carrier protein 2; sterol transfer, SCP-2, RSGI, structural
genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB:
1wfr_A
Length = 130
Score = 32.5 bits (73), Expect = 0.091
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 330 EGSWHIDLKTGSGSSGRGKPSSTV-DATLTMTEKNFIALFEGKLKPTSAFMTGKLKIS-G 387
+ +DL G+ + D + + + EG+L+P SA M G L++ G
Sbjct: 48 GVAVVLDLWHGACRGAKAVEGEAEADFVIEADLATWQEVLEGRLEPLSALMRGLLELKKG 107
Query: 388 NLQKAMKL 395
+
Sbjct: 108 TIAALAPY 115
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 33.7 bits (77), Expect = 0.11
Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 18/111 (16%)
Query: 10 LTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG--GNC 67
+ IT A R + A+ P + +
Sbjct: 5 PHLLITSAGRRAKLVEYFVKEFKTGRVST----ADCSPLASALYMADQHYIVPKIDEVEY 60
Query: 68 LPCIVDIRDEHAVQ----------SAVNAAVDKFG--GIDILVNNASAISL 106
+ ++ + + V + A ++F G+ ++V+ +A L
Sbjct: 61 IDHLLTLCQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACEL 111
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.11
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 6/33 (18%)
Query: 361 EKNFIALFEGKLK---PTSAFMTGKLKISGNLQ 390
EK + + LK SA L I ++
Sbjct: 18 EKQALKKLQASLKLYADDSA---PALAIKATME 47
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 32.8 bits (75), Expect = 0.17
Identities = 32/119 (26%), Positives = 39/119 (32%), Gaps = 27/119 (22%)
Query: 7 LSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI--------------AAKTAEPHPKLP 50
L G FI G A G G A+A A GA I++ + LP
Sbjct: 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLP 65
Query: 51 GTIYSAAKEVE--DAGGNC---LPCIVDIR------DEHAVQSAVNAAVDKFGGIDILV 98
K+V DA + +P V VQ A FG IDILV
Sbjct: 66 DGSLMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILV 124
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 32.6 bits (75), Expect = 0.18
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 22/106 (20%)
Query: 1 MINTGKLSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI------AAKTAEPHPKLPGT 52
+G L G I G A+ R I IA A + GA + K EP
Sbjct: 23 TAQSGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEP------- 75
Query: 53 IYSAAKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILV 98
A+E+ C D+ D ++ + K+G +D LV
Sbjct: 76 ---LAEELGAF--VAGHC--DVADAASIDAVFETLEKKWGKLDFLV 114
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 32.8 bits (75), Expect = 0.21
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 11 TIFITGASRGIGKAIALK-AAKDGA-NIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCL 68
T+ +TG + +G +A + G N+V+ ++ + ++ G
Sbjct: 532 TVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELV----AQLTAYGAEVS 587
Query: 69 PCIVDIRDEHAVQSAVNAA 87
D+ D + + +
Sbjct: 588 LQACDVADRETLAKVLASI 606
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty
acid biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 32.5 bits (75), Expect = 0.21
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 4 TGKLSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI--AAKTAEPHPKLPGTIYSAAKE 59
T LSG + G + R +G AIA K + GA + + A+ P A+
Sbjct: 3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE------AEKLAEA 56
Query: 60 VEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILV 98
+ A D+ + + + + FGG+D LV
Sbjct: 57 LGGAL--LFRA--DVTQDEELDALFAGVKEAFGGLDYLV 91
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 32.2 bits (74), Expect = 0.22
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 21/101 (20%)
Query: 5 GKLSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI-----AAKTAEPHPKLPGTIYSAA 57
G L+G I ITG S + I IA ++GA + E
Sbjct: 22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEK----------LC 71
Query: 58 KEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILV 98
E A LPC D+ + ++ + G+D +V
Sbjct: 72 AEFNPA--AVLPC--DVISDQEIKDLFVELGKVWDGLDAIV 108
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 32.2 bits (74), Expect = 0.26
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 22/102 (21%)
Query: 5 GKLSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI------AAKTAEPHPKLPGTIYSA 56
G L G I G A+ + I IA GA + K P
Sbjct: 2 GFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP----------I 51
Query: 57 AKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILV 98
A+E+ D+ E +S N+ G +D +V
Sbjct: 52 AQELNSP--YVYEL--DVSKEEHFKSLYNSVKKDLGSLDFIV 89
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A*
1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A*
1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 31.8 bits (73), Expect = 0.34
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 22/102 (21%)
Query: 5 GKLSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI------AAKTAEPHPKLPGTIYSA 56
G LSG I +TG AS I IA ++GA + E
Sbjct: 5 GFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE----------F 54
Query: 57 AKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILV 98
A ++ L C D+ ++ ++ + + D V
Sbjct: 55 AAQLGSD--IVLQC--DVAEDASIDTMFAELGKVWPKFDGFV 92
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A
{Burkholderia pseudomallei 1710B}
Length = 271
Score = 31.4 bits (72), Expect = 0.38
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 22/104 (21%)
Query: 3 NTGKLSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI------AAKTAEPHPKLPGTIY 54
+ G L G I +TG S R I IA ++GA +
Sbjct: 8 HMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITE--------- 58
Query: 55 SAAKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILV 98
A E PC D+ D+ + + + + +D LV
Sbjct: 59 -FAAEFGSE--LVFPC--DVADDAQIDALFASLKTHWDSLDGLV 97
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 31.5 bits (72), Expect = 0.40
Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 46/144 (31%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVI----AAKTAEPHPKLPGTIYSAAKEVEDAGGN 66
+ +TGA+ G+G AI + + AE H ++ V
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEI----------VA----- 48
Query: 67 CLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINAR 126
D+ D AV V D +++ +S+ N L Q N
Sbjct: 49 -----CDLADAQAVHDLVK-------DCDGIIHLG-GVSVERPWNDIL-------QANII 88
Query: 127 GTYLVKASQGLEIQSAVNAAVDKF 150
G Y + ++A N +
Sbjct: 89 GAYNL-------YEAARNLGKPRI 105
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 31.4 bits (72), Expect = 0.45
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 22/102 (21%)
Query: 5 GKLSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI------AAKTAEPHPKLPGTIYSA 56
G L G ITG A+ R I IA ++GA + K
Sbjct: 17 GLLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVRE----------I 66
Query: 57 AKEVEDAGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILV 98
AK + C D+ + +++ + +G +DI+V
Sbjct: 67 AKGFGSD--LVVKC--DVSLDEDIKNLKKFLEENWGSLDIIV 104
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 31.0 bits (71), Expect = 0.64
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 7 LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAE 44
+ +I + GA G +A+ K+GA + + +T E
Sbjct: 127 VKEKSILVLGAG-GASRAVIYALVKEGAKVFLWNRTKE 163
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 30.7 bits (70), Expect = 0.65
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 12 IFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPG 51
IFI G++ +GK++ + I A+ E P+
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNN 42
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 30.3 bits (68), Expect = 0.81
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 12 IFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPCI 71
I I GA+ G I +A G + + A + I K++ D +
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFD------LTL 56
Query: 72 VDIRDEHAVQSAVNAAVD 89
D+ D++ V A + D
Sbjct: 57 SDLSDQNVVVDAYGISPD 74
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 30.2 bits (67), Expect = 0.98
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 10 LTIFITGASRGIGKAIALKAAKDGANIVI-------AAKTAEPHPKLPGTIYSAAKEVED 62
+ + + G + +GK +AL+ A G IV+ A A + ++ G + ED
Sbjct: 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNED 60
Query: 63 AGGNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVN 99
A C V + ++
Sbjct: 61 AAEAC-DIAVLTIPWEHAIDTARDLKNILREKIVVSP 96
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 30.5 bits (69), Expect = 1.2
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 24/95 (25%)
Query: 5 GKLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAG 64
L+ T+ + GA G GKA+A A + GA +VIA +T E A + E G
Sbjct: 360 SPLASKTVVVIGAG-GAGKALAYGAKEKGAKVVIANRTYE----------RALELAEAIG 408
Query: 65 GNCLPCIVDIRDEHAVQSAVNAAVDKFGGIDILVN 99
G L + D+ + H +L N
Sbjct: 409 GKALS-LTDLDNYHPEDG------------MVLAN 430
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 30.3 bits (68), Expect = 1.2
Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 27/118 (22%)
Query: 8 SGLTIFITG-AS-RGIGKAIALKAAKDGANIVI------AAKTAEPHPKLPGTIYSAAKE 59
+ FI G G G IA + +K I+ + + +
Sbjct: 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDK 60
Query: 60 VEDAGGN-CLPCIV------------------DIRDEHAVQSAVNAAVDKFGGIDILV 98
+ LP ++ + ++ N K+G I++LV
Sbjct: 61 DKKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLV 118
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 30.3 bits (67), Expect = 1.2
Identities = 13/89 (14%), Positives = 35/89 (39%), Gaps = 19/89 (21%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
++ + G+ + + G + +A +T E +AK++ + P
Sbjct: 5 SVLMLGSGF-VTRPTLDVLTDSGIKVTVACRTLE-----------SAKKLSAGVQHSTPI 52
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVN 99
+D+ D+ A+ + V D++++
Sbjct: 53 SLDVNDDAALDAEVA-------KHDLVIS 74
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 30.1 bits (68), Expect = 1.3
Identities = 28/119 (23%), Positives = 39/119 (32%), Gaps = 27/119 (22%)
Query: 7 LSGLTIFITG-AS-RGIGKAIALKAAKDGANIVI--------------AAKTAEPHPKLP 50
L G T F+ G A G G AIA A GA + + + + KLP
Sbjct: 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLP 66
Query: 51 GTIYSAAKEVE--DAGGNC---LPCIV------DIRDEHAVQSAVNAAVDKFGGIDILV 98
V DA + +P + D + ++ G IDILV
Sbjct: 67 DGSLIEFAGVYPLDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILV 125
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 29.4 bits (66), Expect = 1.7
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 19/102 (18%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
+ I GA I + + + A AK + N
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLF------------ARQPAKIHKPYPTNSQII 72
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANT 112
+ D+ + A++ A G DI+ N + L AN+
Sbjct: 73 MGDVLNHAALKQA-------MQGQDIVYANLTGEDLDIQANS 107
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 29.2 bits (65), Expect = 2.0
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 12 IFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPG 51
I + GA+ G AI +A + G ++ + + G
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG 42
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 29.2 bits (66), Expect = 2.1
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 11 TIFITGASRGIGKAIA--LKAAKDGANIVIAAKTAEPHPKLPG 51
+I +TGA+ +G + L + I+ + E L
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD 44
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 28.8 bits (65), Expect = 2.3
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 20/93 (21%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
I I GA+ G +A + G + + + + P + G
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE------GPRPAHVVVG----- 53
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNASA 103
D+ V V G D ++
Sbjct: 54 --DVLQAADVDKTVA-------GQDAVIVLLGT 77
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 29.1 bits (65), Expect = 2.4
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 15/118 (12%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
+ I G + IGK I + G + + P + G +
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHPTYVLFR---PEVVSNIDKVQMLLYFKQLGAKLIE- 61
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTANTPLKKYDLMNQINARGT 128
+ D + A +D+++ SA++ ++ L++ L+ I G
Sbjct: 62 -ASLDDHQRLVDA-------LKQVDVVI---SALAGGVLSHHILEQLKLVEAIKEAGN 108
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 28.8 bits (64), Expect = 3.1
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 1 MINTGK-LSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHP 47
+ +T + G + + G R +G ++A K A GA + + A+ ++
Sbjct: 146 IQHTDFTIHGANVAVLGLGR-VGMSVARKFAALGAKVKVGARESDLLA 192
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 28.7 bits (64), Expect = 3.8
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
I I G + IG+ I + A+ N A P T + G L
Sbjct: 4 KILILGPTGAIGRHI-VWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLE- 61
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTAN 111
DI D + A +DI++ A + + D
Sbjct: 62 -GDINDHETLVKA-------IKQVDIVICAAGRLLIEDQVK 94
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 27.9 bits (62), Expect = 6.6
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAAKTAEPHPKLPGTIYSAAKEVEDAGGNCLPC 70
I + GA+ IG+ +A + G + E + + +G N +
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLL--VRESTASSNSEKAQLLESFKASGANIVH- 62
Query: 71 IVDIRDEHAVQSAVNAAVDKFGGIDILVNNASAISLTDTAN 111
I D ++ A +D++++ ++ + N
Sbjct: 63 -GSIDDHASLVEA-------VKNVDVVISTVGSLQIESQVN 95
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 27.5 bits (62), Expect = 6.7
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 6 KLSGLTIFITGASRGIGKAIALKAAKDGANIVIAAKTAE 44
+ + I GA G KA+A + K G + + +++
Sbjct: 115 QKNYQNALILGAG-GSAKALACELKKQGLQVSVLNRSSR 152
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 27.2 bits (61), Expect = 8.9
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 11 TIFITGASRGIGKAIALKAAKDGANIVIAA 40
I +TGA+ +G I +A + +
Sbjct: 2 NIMLTGATGHLGTHITNQAIANHIDHFHIG 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.370
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,056,922
Number of extensions: 374708
Number of successful extensions: 1494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1049
Number of HSP's successfully gapped: 446
Length of query: 406
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 310
Effective length of database: 4,021,377
Effective search space: 1246626870
Effective search space used: 1246626870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (25.9 bits)