BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6114
         (66 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KVO|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
           Hydroxysteroid Dehydrogenase Like 2 (Hsdl2)
 pdb|3KVO|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
           Hydroxysteroid Dehydrogenase Like 2 (Hsdl2)
          Length = 346

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 44/63 (69%)

Query: 3   NTGKLSGLTIFITGASRXXXXXXXXXXXXXXXNIVIAAKTAEPHPKLPGTIYSAAKEVED 62
           NTG+L+G T+FITGASR               NIVIAAKTA+PHPKL GTIY+AA+E+E 
Sbjct: 39  NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEA 98

Query: 63  AGG 65
            GG
Sbjct: 99  VGG 101


>pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
          Homolog) Mycobacterium Thermoresistibile
 pdb|3SC4|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
          Homolog) Mycobacterium Thermoresistibile
          Length = 285

 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query: 7  LSGLTIFITGASRXXXXXXXXXXXXXXXNIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
          L G T+FI+G SR               N+ + AK+AEPHPKLPGTIY+AAKE+E+AGG
Sbjct: 7  LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65


>pdb|3E03|A Chain A, Crystal Structure Of A Putative Dehydrogenase From
          Xanthomonas Campestris
 pdb|3E03|B Chain B, Crystal Structure Of A Putative Dehydrogenase From
          Xanthomonas Campestris
 pdb|3E03|C Chain C, Crystal Structure Of A Putative Dehydrogenase From
          Xanthomonas Campestris
          Length = 274

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 36/59 (61%)

Query: 7  LSGLTIFITGASRXXXXXXXXXXXXXXXNIVIAAKTAEPHPKLPGTIYSAAKEVEDAGG 65
          LSG T+FITGASR               N+ IAAK+A  +PKLPGTI+SAA  V  AGG
Sbjct: 4  LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.132    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,429,975
Number of Sequences: 62578
Number of extensions: 26996
Number of successful extensions: 31
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 3
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)