BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6118
(660 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 490 LRELFQFRYMQTDPNWSNFFYNKDTKQLILLDFG 523
L+ + QF + D SNF YN+ K+ L+DFG
Sbjct: 130 LKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFG 163
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 27 QTLEIQQKWTNSSFKSLAS-NLDQSLKSTSTTPCALLNANVLKEAAERSSVVLDGVKAFV 85
Q L ++W K+LA+ NLD S A L+A V + A ER +L G+ AFV
Sbjct: 110 QLLATDERW----LKALAARNLD-----VSKVRVAPLSAGVFEYAEERGRRILRGL-AFV 159
Query: 86 FKEAGSERDVSEFEQDSQYSEPVDS 110
+F +DS ++ PVD
Sbjct: 160 ----------QDFPEDSAWAHPVDG 174
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 27 QTLEIQQKWTNSSFKSLAS-NLDQSLKSTSTTPCALLNANVLKEAAERSSVVLDGVKAFV 85
Q L ++W K+LA+ NLD S A L+A V + A ER +L G+ AFV
Sbjct: 110 QLLATDERW----LKALAARNLD-----VSKVRVAPLSAGVFEYAEERGRRILRGL-AFV 159
Query: 86 FKEAGSERDVSEFEQDSQYSEPVDS 110
+F +DS ++ PVD
Sbjct: 160 ----------QDFPEDSAWAHPVDG 174
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 27 QTLEIQQKWTNSSFKSLAS-NLDQSLKSTSTTPCALLNANVLKEAAERSSVVLDGVKAFV 85
Q L ++W K+LA+ NLD S A L+A V + A ER +L G+ AFV
Sbjct: 110 QLLATDERW----LKALAARNLD-----VSKVRVAPLSAGVFEYAEERGRRILRGL-AFV 159
Query: 86 FKEAGSERDVSEFEQDSQYSEPVDS 110
+F +DS ++ PVD
Sbjct: 160 ----------QDFPEDSAWAHPVDG 174
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 27 QTLEIQQKWTNSSFKSLAS-NLDQSLKSTSTTPCALLNANVLKEAAERSSVVLDGVKAFV 85
Q L ++W K+LA+ NLD S A L+A V + A ER +L G+ AFV
Sbjct: 110 QLLATDERW----LKALAARNLD-----VSKVRVAPLSAGVFEYAEERGRRILRGL-AFV 159
Query: 86 FKEAGSERDVSEFEQDSQYSEPVDS 110
+F +DS ++ PVD
Sbjct: 160 ----------QDFPEDSAWAHPVDG 174
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 27 QTLEIQQKWTNSSFKSLAS-NLDQSLKSTSTTPCALLNANVLKEAAERSSVVLDGVKAFV 85
Q L ++W K+LA+ NLD S A L+A V + A ER +L G+ AFV
Sbjct: 110 QLLATDERW----LKALAARNLD-----VSKVRVAPLSAGVFEYAEERGRRILRGL-AFV 159
Query: 86 FKEAGSERDVSEFEQDSQYSEPVDS 110
+F +DS ++ PVD
Sbjct: 160 ----------QDFPEDSAWAHPVDG 174
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 27 QTLEIQQKWTNSSFKSLAS-NLDQSLKSTSTTPCALLNANVLKEAAERSSVVLDGVKAFV 85
Q L ++W K+LA+ NLD S A L+A V + A ER +L G+ AFV
Sbjct: 110 QLLATDERW----LKALAARNLD-----VSKVRVAPLSAGVFEYAEERGRRILRGL-AFV 159
Query: 86 FKEAGSERDVSEFEQDSQYSEPVDS 110
+F +DS ++ PVD
Sbjct: 160 ----------QDFPEDSAWAHPVDG 174
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 27 QTLEIQQKWTNSSFKSLAS-NLDQSLKSTSTTPCALLNANVLKEAAERSSVVLDGVKAFV 85
Q L ++W K+LA+ NLD S A L+A V + A ER +L G+ AFV
Sbjct: 110 QLLATDERW----LKALAARNLD-----VSKVRVAPLSAGVFEYAEERGRRILRGL-AFV 159
Query: 86 FKEAGSERDVSEFEQDSQYSEPVDS 110
+F +DS ++ PVD
Sbjct: 160 ----------QDFPEDSAWAHPVDG 174
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 27 QTLEIQQKWTNSSFKSLAS-NLDQSLKSTSTTPCALLNANVLKEAAERSSVVLDGVKAFV 85
Q L ++W K+LA+ NLD S A L+A V + A ER +L G+ AFV
Sbjct: 108 QLLATDERW----LKALAARNLD-----VSKVRVAPLSAGVFEYAEERGRRILRGL-AFV 157
Query: 86 FKEAGSERDVSEFEQDSQYSEPVDS 110
+F +DS ++ PVD
Sbjct: 158 ----------QDFPEDSAWAHPVDG 172
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 456 ILTTELIEGVPV-DQCVDLDYESRKHICKLVM-ELC--LRELFQFRYMQTDPNWSNFF-Y 510
+L E ++G + D+ +D Y + L M ++C +R + Q + D N
Sbjct: 162 VLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCV 221
Query: 511 NKDTKQLILLDFGATRAY 528
N+D KQ+ ++DFG R Y
Sbjct: 222 NRDAKQIKIIDFGLARRY 239
>pdb|3TSP|A Chain A, Crystal Structure Of E. Coli Hypf
pdb|3TSU|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Pnp And
Carbamoyl Phosphate
pdb|3TTC|A Chain A, Crystal Structure Of E. Coli Hypf With Adp And Carbamoyl
Phosphate
pdb|3TTF|A Chain A, Crystal Structure Of E. Coli Hypf With Amp And Carbamoyl
Phosphate
Length = 657
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 43/100 (43%)
Query: 244 AEVTRRTLGFGDSSLSVGTTLDSAFINPANAERIVNTLCKVRGAALKIGQILSIQDSNVI 303
E+ RR+ G+ +L++ + + NT C VRG + + Q L + I
Sbjct: 279 GEMLRRSRGYVPDALALPPGFKNVPPVLCLGADLKNTFCLVRGEQVVLSQHLGDLSDDGI 338
Query: 304 SPELQKAFERVRQSADFMPQWQVEKVLVTELGPDWKSKLS 343
+ ++A ++ +F PQ+ V + W S+++
Sbjct: 339 QTQWREALRLMQNIYNFTPQYVVHDAHPGYVSCQWASEMN 378
>pdb|3TSQ|A Chain A, Crystal Structure Of E. Coli Hypf With Atp And Carbamoyl
Phosphate
pdb|3TTD|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Cpp And
Carbamoyl Phosphate
Length = 658
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 43/100 (43%)
Query: 244 AEVTRRTLGFGDSSLSVGTTLDSAFINPANAERIVNTLCKVRGAALKIGQILSIQDSNVI 303
E+ RR+ G+ +L++ + + NT C VRG + + Q L + I
Sbjct: 279 GEMLRRSRGYVPDALALPPGFKNVPPVLCLGADLKNTFCLVRGEQVVLSQHLGDLSDDGI 338
Query: 304 SPELQKAFERVRQSADFMPQWQVEKVLVTELGPDWKSKLS 343
+ ++A ++ +F PQ+ V + W S+++
Sbjct: 339 QTQWREALRLMQNIYNFTPQYVVHDAHPGYVSCQWASEMN 378
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 546 GDKDKVLT------ISRKM--GFLTGYESKIMEEAHVNTVMILSEVFSEKIGEFDFGGQD 597
G KD ++T + KM GF+ YES +ME+ H +++ ++ + EF GG
Sbjct: 77 GIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKL---NMDEFAMGGST 133
Query: 598 TTKRITELVPTILNHRLCP 616
T + V +H+ P
Sbjct: 134 ETSYFKKTV-NPFDHKAVP 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,931,286
Number of Sequences: 62578
Number of extensions: 712699
Number of successful extensions: 1778
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 21
length of query: 660
length of database: 14,973,337
effective HSP length: 105
effective length of query: 555
effective length of database: 8,402,647
effective search space: 4663469085
effective search space used: 4663469085
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)