RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6118
(660 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 2e-08
Identities = 67/579 (11%), Positives = 144/579 (24%), Gaps = 193/579 (33%)
Query: 65 NVLKEAAERSSVVLDGVKAF-----VFKEAGSERDVSEFEQD------SQYSEPVDSTPI 113
L E +V++DGV S + + + + P ++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLE 200
Query: 114 PQVQTSTPITATTTATQEQSKPINYTSIIDSESLERIKQIPFMKGVDPKTNLEKSKLGYK 173
+ I N+TS D S + K + + +
Sbjct: 201 MLQKLLYQIDP------------NWTSRSDHSS-------------NIKLRIHSIQAELR 235
Query: 174 KAMELTKKKDAFAVVDEDVARAPGAPKPIPKAKNKPQLNPVAKQRKVPSSRLGRMVSFGS 233
+ ++ ++ V+ +V +++ +
Sbjct: 236 RLLKSKPYENCLLVLL-NVQ----------------------------NAKAWNAFNLSC 266
Query: 234 LAAGLGVGTIAEVTRRTLGFGDSSLSVGTTLDSAFINPANAERIVNTLCKVRGAALKIGQ 293
+ L + TT + +A
Sbjct: 267 ---------------KIL--------L-TTRFKQVTDFLSAATT---------------- 286
Query: 294 ILSIQDSNVISPELQKAFERVRQSADFMPQWQVEKVLVTELGPDWKSKLSSLDLK--PFA 351
+++ + + ++ L L L P
Sbjct: 287 ------THISLDHHSMTLTP-DEVKSLLLKY---------LDCR-PQDLPREVLTTNPRR 329
Query: 352 AASIGQVHAGLLKDGT---EVAMKIQYPGVAKGIESDIDNL-IGVMKIWNVFPE-GMFLD 406
+ I + ++DG + + + IES ++ L + +F +F
Sbjct: 330 LSIIAE----SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPP 383
Query: 407 NLVEVAKKELG--W-EVDYKREAECTRKF--KELVEPYP---YYFVPTVIDELSTGQILT 458
+ + L W +V K LVE P +P++ EL
Sbjct: 384 S-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 459 TEL----IEGVPVDQCVDLDYESRK------------HICKLVME---LCLRELFQ-FRY 498
L ++ + + D D H+ + R +F FR+
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 499 MQ-----TDPNWSNFFYNKDTKQLILLDFGATRAYSKEFMDQYIQVIKAGADGDKDKVLT 553
++ W+ +T L + Y YI D D
Sbjct: 503 LEQKIRHDSTAWNASGSILNT----LQQL---KFYKP-----YIC------DNDPKYERL 544
Query: 554 ISRKMGFLTGYESKIMEEAHVNTVMIL-----SEVFSEK 587
++ + FL E ++ + + + I +F E
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 56.8 bits (136), Expect = 2e-08
Identities = 73/572 (12%), Positives = 148/572 (25%), Gaps = 195/572 (34%)
Query: 140 SIIDSESLERIKQIPFMKGVDPKTN--------LEKSKLGYKKAMELTKKKD----AFAV 187
SI+ E ++ I D + L K + +K +E + + +
Sbjct: 44 SILSKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 188 VDEDVARAPGAPKPIPKAKNKPQLNPVAKQRKVPSSRLGRMVSFGSLAAGL--------- 238
E + I + N V + V R+ + L L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQALLELRPAKNV 153
Query: 239 ---GVGTIAEVTRRTLGFGDSSLSVGTTLDSAFINPANAERI--VN-TLCKVRGAALKIG 292
GV G G + + S + +I +N C L++
Sbjct: 154 LIDGVL----------GSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 293 QILSIQDSNVISPELQKAFERVRQSADFMPQWQVEKVLVTELGPDWKSKLSSLDLKPFAA 352
Q L Q I P +D ++ +L L KP+
Sbjct: 203 QKLLYQ----IDPNWT-------SRSDHSSNIKLR----IHSIQAELRRL--LKSKPYEN 245
Query: 353 ASIGQVHAGLLKDGTEVAMKIQYPGVAKGIESDIDNLIGVMKIWNVFPEGMFLDNLVEVA 412
LL + ++ N K WN F
Sbjct: 246 C--------LL------------------VLLNVQNA----KAWNAF------------- 262
Query: 413 KKELGWEVDYKREAEC-----TRKFKELVE--PYPYYFVPTVIDELSTGQILTTELIEGV 465
+ C TR FK++ + ++ T LT + ++ +
Sbjct: 263 --------NLS----CKILLTTR-FKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSL 306
Query: 466 PVDQCVDLDYES-RKHICK---LVMELCLRELFQFRYMQTDPN-WSNF-FYNKDTKQLIL 519
+ + +D + + + + + + + W N+ N D I+
Sbjct: 307 -LLKYLDCRPQDLPREVLTTNPRRLSIIAESI------RDGLATWDNWKHVNCDKLTTII 359
Query: 520 ------LDFGATRAYSKEFM----DQYIQVIKAGADGDKDKVLTISRKMGFLTGYESKIM 569
L+ R +I +L++ + K
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHI----------PTILLSL------IWFDVIKSD 403
Query: 570 EEAHVNTVMILSEVFSEKIGEFDFGGQDTTKRITELVPTILNH----RLCPPPEEIYSLH 625
++++++ + E +++T I L E Y+LH
Sbjct: 404 VM------VVVNKLHKYSLVEKQ--PKESTISI---------PSIYLELKVKLENEYALH 446
Query: 626 RKLSGVFLLCSKLKVKMACYPMLKDVYDNYKF 657
R + + + ++ D Y +
Sbjct: 447 RSI----VDHYNIPKTFDSDDLIPPYLDQYFY 474
Score = 44.8 bits (105), Expect = 9e-05
Identities = 33/232 (14%), Positives = 61/232 (26%), Gaps = 79/232 (34%)
Query: 19 VANAGIKHQTLEIQQKWTNSSFKSLASNLDQSLKSTSTTPCAL-LNANVLKEAA------ 71
+ N LE+ QK L +D + S S + L + ++
Sbjct: 189 LKNCNSPETVLEMLQK--------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 72 ---ERSSVVLDGV------KAFVFK----------------EAGSERDVSE------FEQ 100
E +VL V AF A + +S
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 101 D------SQY-SEPVDSTPIPQVQTSTPITATTTATQEQSKP--INYTSIIDSESLERIK 151
D +Y P +V T+ P + A + + ++ + L I
Sbjct: 301 DEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 152 QIPFMKGVDPKTNLEKSKLGYKKAMELTKKKDAFAVVDEDVARAPGAPKPIP 203
+ + ++P E K+ + + +V IP
Sbjct: 360 ES-SLNVLEPA---EYRKM-FDR----------LSVFPPSA--------HIP 388
Score = 32.5 bits (73), Expect = 0.49
Identities = 31/226 (13%), Positives = 60/226 (26%), Gaps = 62/226 (27%)
Query: 4 TYVSDLKGVLKGLQLVANAGIKHQTLEIQQKWTNSSFKSLASNLDQSLKSTSTTPCAL-L 62
T L L + + K+ + + L + L T P L +
Sbjct: 286 TTHISLDHHSMTLT-------PDEVKSLLLKYLDCRPQDLPR---EVLT---TNPRRLSI 332
Query: 63 NANVLKEAAERSSVVLDGVKAFVFKEAGSERDVS-----EFEQDSQYSE----PVDSTPI 113
A +++ D K + + + S E + P S I
Sbjct: 333 IAESIRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHI 387
Query: 114 P---------QVQTSTPITATT-----TATQEQSKPINYT----------SIIDSESLER 149
P V S + + ++Q K + + + +L R
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 150 --IKQIPFMKGVDPKTNLEK-------SKLGYK-KAMELTKKKDAF 185
+ K D + S +G+ K +E ++ F
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 3e-05
Identities = 103/629 (16%), Positives = 193/629 (30%), Gaps = 206/629 (32%)
Query: 51 LKSTSTTPCALLNANVLKEAAERSSVV--LDGVKAFVFKEAGSERDVSEFEQDSQYSEPV 108
+ + ST P L + ++ E +V A +E +F + EP
Sbjct: 1 MDAYSTRPLTLSHGSL-----EHVLLVPTASFFIASQLQE--------QFNKI--LPEPT 45
Query: 109 DSTPIPQVQTSTP-ITAT----TTATQEQSKPINYTSIIDSESLERIKQIPFMKGVD--- 160
+ T+ + ++ E SK + ++ + L + +++G D
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL-NLCLTEFEN-CYLEGNDIHA 103
Query: 161 --------PKTNLEKSKL---GYKKAMELTKKKDAFAVVDEDVARAPGAPKPIPKAKNKP 209
T L K+K Y A + K+ P K N
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKR-------------------PFDKKSN-S 143
Query: 210 QLNPVAKQRKVPSSRLGRMVSFGSLAAGLGVGTI----AEVTRRTLGFGDSSLSVGTTLD 265
L + +L + FG G G E+ R L + + VG +
Sbjct: 144 ALFRAVGEGNA---QL--VAIFG------GQGNTDDYFEEL--RDL-YQTYHVLVGDLIK 189
Query: 266 SAFINPANAERIVNTLCKVRGAALKIGQILSIQD---------SNVIS-PELQKAFERVR 315
+ + R KV L I + L S IS P + V
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG-----VI 244
Query: 316 QSADFMPQWQVEKVLVTELGPDWKSKLSSLDLKPFAAASIGQVHAGLLKDGTEVAMKIQY 375
Q A ++ V LG + +L+ + + G GL+ A+ I
Sbjct: 245 QLAHYV-------VTAKLLG------FTPGELRSYLKGATGHS-QGLV-----TAVAIA- 284
Query: 376 PGVAKGIESDIDNLIGVMKIWNVFPEGMFLDNLVEVAKKELGWEVDYKREAECTRKFKEL 435
ES ++ + + +F +G C
Sbjct: 285 --ETDSWESFFVSVRKAITV-------LFF----------IGVR--------CY------ 311
Query: 436 VEPYPYYFVP--TVIDELSTGQILTTELIEGVP-----VDQCVDLDYESRKHICKLVMEL 488
E YP +P + D L EGVP + +L +++ + V +
Sbjct: 312 -EAYPNTSLPPSILEDSLENN--------EGVPSPMLSI---SNL---TQEQVQDYVNKT 356
Query: 489 CLRELFQFRYMQTDPNWSNFFYNKDTKQLILLDFGATRA-YSKEFMDQYIQVIKAGADGD 547
L + ++ S N K L++ G ++ Y ++ ++ KA + D
Sbjct: 357 N-SHLPAGKQVEI----SLV--NGA-KNLVVS--GPPQSLYG---LNLTLRKAKAPSGLD 403
Query: 548 KDKVLTISRK----MGFL---TGYESKIMEEAHVNTVMILSEVFSEKIGEFD-------- 592
+ ++ RK FL + + S ++ A + +I ++ + F+
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPA---SDLINKDLVKNNV-SFNAKDIQIPV 459
Query: 593 ---FGGQD---TTKRITE-LVPTILNHRL 614
F G D + I+E +V I+ +
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 36.6 bits (84), Expect = 0.033
Identities = 33/240 (13%), Positives = 64/240 (26%), Gaps = 77/240 (32%)
Query: 444 VPTVIDELSTGQILTTELIEGVP-VDQCVDLDYE--SRKHICKLVMELCLRELFQFRYMQ 500
VPT L + + +P + D E + EL + L +
Sbjct: 22 VPT--ASFFIASQLQEQFNKILPEPTEGFAADDEPTT-------PAELVGKFL-GYVSSL 71
Query: 501 TDPNWSNFFYNKDTKQLILLDFGATRAYSKEFMDQY-----IQVIKAGADGDKDKVLTIS 555
+P+ Q++ L EF + Y I + A + D T+
Sbjct: 72 VEPS-----KVGQFDQVLNLCL-------TEFENCYLEGNDIHALAAKLLQENDT--TLV 117
Query: 556 RKMGFLTGY---------------ESKIMEEAHVNTVMILSEVFSEKIGEFDFGGQ-DTT 599
+ + Y S + ++ + FGGQ +T
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA----QLVAI------FGGQGNTD 167
Query: 600 KRITELVPTILNHRLCPPPEEIYSLHRKLSGVFL------LCSKLKVKMACYPMLKDVYD 653
EL ++Y + L G + L ++ + + +
Sbjct: 168 DYFEEL-------------RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Score = 29.6 bits (66), Expect = 3.9
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 55/157 (35%)
Query: 18 LVANAGIKHQTLEIQQKWTNSSFKSLASNLDQSLKSTSTTPCALLNA--NVLKEAAERSS 75
L + A + + S +SL ++ ++ A R
Sbjct: 1770 LASLADV----M---------SIESLVE---------------VVFYRGMTMQVAVPRDE 1801
Query: 76 V---------VLDGVKAFVFKEAGSERDVSEFEQDSQYS-EPV-DSTPIPQVQTSTPITA 124
+ + G A F + + V + + + E V + Q + A
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY-----VAA 1856
Query: 125 -TTTATQEQSKPINYTSI--ID------SESLERIKQ 152
A + +N+ + ID S SLE ++
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.21
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 33 QKWTNSSFKSLASNLDQSLK--STSTTPCAL-LNANV 66
+K + K L + SLK + + P AL + A +
Sbjct: 18 EK---QALKKLQA----SLKLYADDSAP-ALAIKATM 46
Score = 28.0 bits (61), Expect = 7.2
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 24/51 (47%)
Query: 339 KSKLSSLD--LKPFAAASIGQVHAGLLKDGTEVAMKIQYPGVAKGIESDID 387
K L L LK +A S A P +A I++ ++
Sbjct: 19 KQALKKLQASLKLYADDS-----A---------------PALA--IKATME 47
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC,
heterodimer, chaperone; 1.90A {Homo sapiens}
Length = 58
Score = 28.6 bits (64), Expect = 0.89
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 591 FDFGGQDTTKRITELVPTILNH 612
F G TK++TE++P+ILN
Sbjct: 36 FTITGHAETKQLTEMLPSILNQ 57
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo
sapiens}
Length = 66
Score = 28.2 bits (63), Expect = 1.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 591 FDFGGQDTTKRITELVPTILNHRLCPPPEEIYSL 624
F G TK++TE++P+ILN + + SL
Sbjct: 36 FTITGHAETKQLTEMLPSILNQ---LGADSLTSL 66
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 30.1 bits (67), Expect = 1.4
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 123 TATTTATQEQSKPINYTSIIDSESLERIKQIPFMKGVDPKTNLEKSKLGYKKAMELTKKK 182
AT A +++ + + I SLE I + + K +KA+ K+K
Sbjct: 65 KATDIAQKKKKRNVTVARAIVGISLEEINRRKNLD-------ASHKKAEAEKAVRELKQK 117
Query: 183 DAFAVVDEDVARAPGAPKPIPKAKNKPQLNPVAKQRKV 220
A + + R K + + K
Sbjct: 118 KANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKG 155
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 29.3 bits (65), Expect = 2.2
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 124 ATTTATQEQSKPINYTSIIDSESLERIKQIPFMKGVDPKTNLEKSKLGYKKAMELTKKKD 183
A + K + I SL+ IK+ +K E K ++ ++ K+K
Sbjct: 64 TEEVAKKRSRKTVKAQRPITGASLDLIKERRSLK-------PEVRKANREEKLKANKEKK 116
Query: 184 AFAVVDEDVARAPGAPKPIPKAKNKPQLNPVAKQRKVPSSR 224
+A A K + A Q+ +SR
Sbjct: 117 KAEKAARKAEKAKSAGTQSSKFSKQQAKG--AFQKVAATSR 155
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex,
layered beta- sheets, transferas; HET: SEP TPO; 3.20A
{Solanum pimpinellifolium} PDB: 3hgk_A*
Length = 321
Score = 29.5 bits (67), Expect = 3.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 356 GQVHAGLLKDGTEVAMK 372
G+V+ G+L+DG +VA+K
Sbjct: 53 GKVYKGVLRDGAKVALK 69
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein
kinase, transferase; HET: SEP TPO ANP; 2.20A
{Arabidopsis thaliana} PDB: 3tl8_A*
Length = 326
Score = 29.5 bits (67), Expect = 4.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 356 GQVHAGLLKDGTEVAMK 372
G+V+ G L DGT VA+K
Sbjct: 44 GKVYKGRLADGTLVAVK 60
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 27.7 bits (61), Expect = 8.0
Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 7/102 (6%)
Query: 123 TATTTATQEQSKPINYTSIIDSESLERIKQIPFMKGVDPKTNLEKSKLGYKKAMELTKKK 182
+ + + + + I SL I K E K ++A+ K+
Sbjct: 63 QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQK-------PEVRKAQREQAIRAAKEA 115
Query: 183 DAFAVVDEDVARAPGAPKPIPKAKNKPQLNPVAKQRKVPSSR 224
+ A A K K +V R
Sbjct: 116 KKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio
parahaemolyticus RIMD 2210633, STR genomics, PSI-2,
protein structure initiative; 1.48A {Vibrio
parahaemolyticus}
Length = 165
Score = 27.7 bits (61), Expect = 9.0
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 406 DNLVEVAKKELGWEVDYKREAECTRKFKELVEPYPYYFVP 445
N+ ++ DY + + KE+V Y
Sbjct: 19 QNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIAS 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.379
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,803,960
Number of extensions: 605521
Number of successful extensions: 1298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1293
Number of HSP's successfully gapped: 23
Length of query: 660
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 560
Effective length of database: 3,909,693
Effective search space: 2189428080
Effective search space used: 2189428080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.4 bits)