RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6118
(660 letters)
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 141
Score = 29.2 bits (65), Expect = 0.89
Identities = 11/64 (17%), Positives = 24/64 (37%)
Query: 492 ELFQFRYMQTDPNWSNFFYNKDTKQLILLDFGATRAYSKEFMDQYIQVIKAGADGDKDKV 551
+ Q W D++ + G R + EF+ + ++ + G + KV
Sbjct: 65 AMIQVLMAGHRSGWKCMVICGDSEDQCVSPCGVCRQFINEFVVKDFPIVMLNSTGSRSKV 124
Query: 552 LTIS 555
+T+
Sbjct: 125 MTMG 128
>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal
domain {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 191
Score = 29.4 bits (65), Expect = 1.1
Identities = 22/191 (11%), Positives = 58/191 (30%), Gaps = 38/191 (19%)
Query: 356 GQVHAGLLKDGTEVAMKIQYPGVAKGIESDIDNLIGVMKIWNVFPEGMFLDNLVEVAKKE 415
V + E +K G + +K + + F
Sbjct: 14 SAVFNCYSEKFGECVVKFHKVGHTSFKK---------VKEKRDYGDLHFSV--------- 55
Query: 416 LGWEVDYKREAECTRKFKELVEPYPYYFVPTVIDELSTGQILTTELIEGVPVDQCVDLDY 475
+ E +K + L P Y + + L+E + + +
Sbjct: 56 -LAIRSARNEFRALQKLQGLAVPKVYAWEGNAV------------LMELIDAKELYRVRV 102
Query: 476 ESRKHICKLVMELCLRELFQFRYMQTDPNWSNFFYNKDTKQLILLDFGATRAY----SKE 531
E+ + +++E + + + + D + N +++ +I DF + +E
Sbjct: 103 ENPDEVLDMILE-EVAKFYHRGIVHGDLSQYNVLVSEEGIWII--DFPQSVEVGEEGWRE 159
Query: 532 FMDQYIQVIKA 542
+++ ++ I
Sbjct: 160 ILERDVRNIIT 170
>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase
{Pseudomonas nautica [TaxId: 2743]}
Length = 166
Score = 27.9 bits (61), Expect = 2.7
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 189 DEDVARAPGAPKPIPKAKNKPQLNPVAKQRKVPSSRLGRMVSF-GSLAAGLGVGTIAEVT 247
D + RA +PIPK N + + KV LG+M F L+ I+ T
Sbjct: 1 DNLMERANSMFEPIPKYPPVIDGNELTQA-KV---ELGKMEFFEPRLS---SSHLISCNT 53
Query: 248 RRTLGFGDSSLSVGTTLDSAFINPANAERIVNT 280
+G G + P N+ + N
Sbjct: 54 CHNVGLGGDDELPTSIGHGWQKGPRNSPTVFNA 86
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 28.5 bits (63), Expect = 2.9
Identities = 18/128 (14%), Positives = 46/128 (35%), Gaps = 14/128 (10%)
Query: 409 VEVAKKELGWEVDYKREAECTRKFKE--LVEPYPYYFVPTVIDELSTGQILTTELIEGVP 466
+ K + +V K+E + ++ + + + ++ E I G+
Sbjct: 35 AKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEEL-------VMIFEFISGLD 87
Query: 467 VDQCVDLDYE--SRKHICKLVMELC--LRELFQFRYMQTDPNWSNFFY-NKDTKQLILLD 521
+ + ++ + + I V ++C L+ L D N Y + + + +++
Sbjct: 88 IFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIE 147
Query: 522 FGATRAYS 529
FG R
Sbjct: 148 FGQARQLK 155
>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 272
Score = 28.1 bits (62), Expect = 3.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 354 SIGQVHAGLLKDGTEVAMKI 373
G+V G T+VA+K
Sbjct: 25 QFGEVWMGYYNGHTKVAVKS 44
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo
sapiens) [TaxId: 9606]}
Length = 263
Score = 27.7 bits (61), Expect = 3.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 356 GQVHAGLLKDGTEVAMKI 373
G VH G + +VA+K
Sbjct: 19 GLVHLGYWLNKDKVAIKT 36
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 270
Score = 27.6 bits (61), Expect = 4.0
Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 11/147 (7%)
Query: 402 GMFLDNLVEVAKKELGWEVDYKREAECTRK----FKELVEPY--PYYFVPTVIDELSTGQ 455
G+ + VEVA EL K E + ++ K L P +Y +
Sbjct: 28 GLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI 87
Query: 456 ILTTELIEGVPVDQCVD----LDYESRKHICKLVMELCLR-ELFQFRYMQTDPNWSNFFY 510
+L TEL+ + + + + + C+ +++ + D N F
Sbjct: 88 VLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFI 147
Query: 511 NKDTKQLILLDFGATRAYSKEFMDQYI 537
T + + D G F I
Sbjct: 148 TGPTGSVKIGDLGLATLKRASFAKAVI 174
>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 258
Score = 27.3 bits (60), Expect = 5.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 356 GQVHAGLLKDGTEVAMKI 373
G V G + +VA+K+
Sbjct: 18 GVVKYGKWRGQYDVAIKM 35
>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 27.4 bits (60), Expect = 6.0
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 356 GQVHAGLLKDGTEVAMKI 373
G+V G T VA+K
Sbjct: 31 GEVWMGTWNGTTRVAIKT 48
>d2giaa1 d.18.1.4 (A:56-221) Guide RNA binding protein gBP25
{Trypanosoma brucei [TaxId: 5691]}
Length = 166
Score = 26.6 bits (58), Expect = 7.4
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 5 YVSDLKGVLKGLQLVANAGIKHQTLEIQQKWTNSSFK-SLASNLDQSLKSTSTTP 58
Y + VL+G + + +E+ ++TN++F + A+ +LK TST P
Sbjct: 75 YTARFLAVLEG---------RSEKVEVHSRYTNATFTPNPAAPYTFTLKCTSTRP 120
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase,
C-terminal domain {Agrobacterium tumefaciens [TaxId:
358]}
Length = 266
Score = 26.8 bits (59), Expect = 8.0
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 512 KDTKQLILLDFGATRAYSKEFMDQYIQVIKA----GADG 546
++ L + DFG R +S + ++ +K G
Sbjct: 24 RELPGLRISDFGTRRRHSFLWQRWCVEALKEGIGPAFTG 62
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 26.8 bits (58), Expect = 9.5
Identities = 19/98 (19%), Positives = 40/98 (40%)
Query: 18 LVANAGIKHQTLEIQQKWTNSSFKSLASNLDQSLKSTSTTPCALLNANVLKEAAERSSVV 77
L +AG H L + + N + L + + LL + + E + ++
Sbjct: 41 LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMI 100
Query: 78 LDGVKAFVFKEAGSERDVSEFEQDSQYSEPVDSTPIPQ 115
L G + ++ + +ER V+ F + ++ VD + Q
Sbjct: 101 LCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQ 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.379
Gapped
Lambda K H
0.267 0.0532 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,344,981
Number of extensions: 110769
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 13
Length of query: 660
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 569
Effective length of database: 1,158,166
Effective search space: 658996454
Effective search space used: 658996454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)