BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6121
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|B Chain B, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|C Chain C, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|D Chain D, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
Length = 184
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 16 GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ T
Sbjct: 51 SADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 104
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 16 GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ T
Sbjct: 52 SADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 105
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 18 DYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
D+ + + DG + L L MG + I+ + + +D +W+H+ R + GT
Sbjct: 256 DFFAIEMLDG--HLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGT 305
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ T
Sbjct: 278 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 330
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 18 DYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
D+ + + DG + L L MG + I+ + + +D +W+H+ R + GT
Sbjct: 481 DFFAIEMLDG--HLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGT 530
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 10 LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHR 63
L + DG+D++ V + G + L G + N+ +DNQWH++ I R
Sbjct: 885 LYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNK-PLNDNQWHNVMISR 937
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ T
Sbjct: 278 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 330
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 15 DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRR 64
D +D L + + G V + + L G ++ N +DN+WH + + RR
Sbjct: 704 DSADTLRLELDAGRVKLTVNLGKGPETLFAGYN---LNDNEWHTVRVVRR 750
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 18 DYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
D+ + + DG + L L MG + I+ + + +D +W+H+ R + GT
Sbjct: 481 DFFAIEMLDG--HLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGT 530
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 10 LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHR 63
L + DG+D++ V + G + L G + N+ +DNQWH++ I R
Sbjct: 876 LYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNK-PLNDNQWHNVMISR 928
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4
pdb|3V64|B Chain B, Crystal Structure Of Agrin And Lrp4
pdb|3V65|A Chain A, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|C Chain C, Crystal Structure Of Agrin And Lrp4 Complex
Length = 191
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
W+G ++ +DY+ +AI DG + L +G + +R + ++ + N+W + HR +EG
Sbjct: 54 WIGKAAERADYMALAIVDGH--LQLSYDLGSQPVVLR-STVKVNTNRWLRIRAHREHREG 110
Query: 69 T 69
+
Sbjct: 111 S 111
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ7|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 204
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
W G G + SDY+ +AI DG V + L G + +R + + + N W H+ +R +EG
Sbjct: 67 WSGKGLERSDYIALAIVDGFVQMMYDL--GSKPVVLR-STVPINTNHWTHIKAYRVQREG 123
Query: 69 T 69
+
Sbjct: 124 S 124
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In
Its Ca2+ Bound State
Length = 195
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
W G G + SDY+ +AI DG V + L G + +R + + + N W H+ +R +EG
Sbjct: 58 WSGKGLERSDYIALAIVDGFVQMMYDL--GSKPVVLR-STVPINTNHWTHIKAYRVQREG 114
Query: 69 T 69
+
Sbjct: 115 S 115
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|C Chain C, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|D Chain D, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 201
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
W G G + SDY+ +AI DG V + L G + +R + + + N W H+ +R +EG
Sbjct: 64 WSGKGLERSDYIALAIVDGFVQMMYDL--GSKPVVLR-STVPINTNHWTHIKAYRVQREG 120
Query: 69 T 69
+
Sbjct: 121 S 121
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
+D+ V +++G + L G I P ++ +D QWH + I R QEG
Sbjct: 83 ADFATVQLRNGFPYFSYDLGSGDTSTMI-PTKI--NDGQWHKIKIVRVKQEG 131
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan
pdb|3SH5|A Chain A, Calcium-Bound Laminin G Like Domain 3 From Human Perlecan
Length = 195
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/60 (20%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 10 LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
+G+ G D++++ ++DG + +L G+ + + +D +WH ++ R + G+
Sbjct: 54 VGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLV---SEDPINDGEWHRVTALREGRRGS 110
>pdb|2R16|A Chain A, Crystal Structure Of Bovine Neurexin 1 Alpha LnsLG
DOMAIN 4 (With No Splice Insert)
Length = 182
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 15 DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRR 64
D +D L + + G V + + L G ++ N +DN+WH + + RR
Sbjct: 51 DSADTLRLELDAGRVKLTVNLGKGPETLFAGYN---LNDNEWHTVRVVRR 97
>pdb|1VZY|A Chain A, Crystal Structure Of The Bacillus Subtilis Hsp33
pdb|1VZY|B Chain B, Crystal Structure Of The Bacillus Subtilis Hsp33
Length = 291
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 3 TLSTDCWLGDGSDGSDYLNVAIKDG---GVAINLKLAMGKLDMYIRPNRLRFDDNQWHHL 59
T++ LG G D L V I+ G G + A G++ Y+ ++ FD N L
Sbjct: 45 TMTASLMLGAMLKGDDKLTVKIEGGGPIGAIVADANAKGEVRAYVSNPQVHFDLNAAGKL 104
Query: 60 SIHRRI 65
+ R +
Sbjct: 105 DVRRAV 110
>pdb|1KDK|A Chain A, The Structure Of The N-Terminal Lg Domain Of Shbg In
Crystals Soaked With Edta
pdb|1KDM|A Chain A, The Crystal Structure Of The Human Sex Hormone-Binding
Globulin (Tetragonal Crystal Form)
Length = 177
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 11 GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSI 61
GD + D+ + ++DG I L +L + P R DD +WH + +
Sbjct: 47 GDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP---RLDDGRWHQVEV 94
>pdb|1D2S|A Chain A, Crystal Structure Of The N-Terminal Laminin G-Like
Domain Of Shbg In Complex With Dihydrotestosterone
Length = 170
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 11 GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSI 61
GD + D+ + ++DG I L +L + P R DD +WH + +
Sbjct: 46 GDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP---RLDDGRWHQVEV 93
>pdb|1LHN|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With 5alpha-Androstane-3beta,17alpha-Diol
pdb|1LHO|A Chain A, Crystal Structure Of The N-terminal Lg-domain Of Shbg In
Complex With 5alpha-androstane-3beta,17beta-diol
pdb|1LHU|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With Estradiol
pdb|1LHV|A Chain A, Crystal Structure Of The N-terminal Lg-domain Of Shbg In
Complex With Norgestrel
pdb|1LHW|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With 2-Methoxyestradiol
Length = 189
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 11 GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSI 61
GD + D+ + ++DG I L +L + P R DD +WH + +
Sbjct: 58 GDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP---RLDDGRWHQVEV 105
>pdb|1F5F|A Chain A, Crystal Structure Of The N-Terminal G-Domain Of Shbg In
Complex With Zinc
Length = 205
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSI 61
+ GD + D+ + ++DG I L +L + P R DD +WH + +
Sbjct: 56 FYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP---RLDDGRWHQVEV 105
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 10 LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHR 63
L + DG+D++ V + G + L G + N+ +DNQWH++ I R
Sbjct: 44 LYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNK-PLNDNQWHNVMISR 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.143 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,882,540
Number of Sequences: 62578
Number of extensions: 87203
Number of successful extensions: 159
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 26
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)