BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6121
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1XQX8|NR3AA_DANRE Neurexin-3a OS=Danio rerio GN=nrxn3a PE=2 SV=1
Length = 1697
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
+TLS W +G +DY+N+A+KDG V++ + L G + + P +F+DN W
Sbjct: 283 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNSW 342
Query: 57 HHLSIHRRIQEGTGCG 72
H + + R +++ +G G
Sbjct: 343 HDVKVTRNLRQHSGIG 358
>sp|A1XQY1|NR3BA_DANRE Neurexin-3b OS=Danio rerio GN=nrxn3b PE=2 SV=1
Length = 1686
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
+TLS W +G +DY+N+A+KDG V++ + L G + + P +F+DN W
Sbjct: 279 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 338
Query: 57 HHLSIHRRIQEGTGCG 72
H + + R +++ +G G
Sbjct: 339 HDIKVTRNLRQHSGIG 354
>sp|D0PRN3|NRX3A_CHICK Neurexin-3 OS=Gallus gallus PE=1 SV=1
Length = 1693
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
+TLS W +G +DY+N+A+KDG V++ + L G + + P +F+DN W
Sbjct: 287 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 346
Query: 57 HHLSIHRRIQEGTGCG 72
H + + R +++ +G G
Sbjct: 347 HDVKVTRNLRQHSGIG 362
>sp|A1XQX2|NR1BA_DANRE Neurexin-1b OS=Danio rerio GN=nrxn1b PE=2 SV=1
Length = 1470
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 37/56 (66%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
+DY+N+A+K+G V++ + L G + + P +F+DN+WH + + R +++ +G G
Sbjct: 296 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVG 351
>sp|Q9Y4C0|NRX3A_HUMAN Neurexin-3 OS=Homo sapiens GN=NRXN3 PE=1 SV=4
Length = 1643
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
+TLS W +G +DY+N+A+KDG V++ + L G + + P +F+DN W
Sbjct: 283 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 342
Query: 57 HHLSIHRRIQEGT 69
H + + R +++ T
Sbjct: 343 HDVKVTRNLRQVT 355
>sp|Q07310|NRX3A_RAT Neurexin-3 OS=Rattus norvegicus GN=Nrxn3 PE=1 SV=1
Length = 1578
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
+TLS W +G +DY+N+A+KDG V++ + L G + + P +F+DN W
Sbjct: 287 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 346
Query: 57 HHLSIHRRIQEGT 69
H + + R +++ T
Sbjct: 347 HDVKVTRNLRQVT 359
>sp|Q6P9K9|NRX3A_MOUSE Neurexin-3 OS=Mus musculus GN=Nrxn3 PE=1 SV=2
Length = 1571
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
+TLS W +G +DY+N+A+KDG V++ + L G + + P +F+DN W
Sbjct: 283 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 342
Query: 57 HHLSIHRRIQEGT 69
H + + R +++ T
Sbjct: 343 HDVKVTRNLRQVT 355
>sp|A1XQX0|NR1AA_DANRE Neurexin-1a OS=Danio rerio GN=nrxn1a PE=2 SV=1
Length = 1491
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ +G G
Sbjct: 308 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQHSGIG 363
>sp|Q9ULB1|NRX1A_HUMAN Neurexin-1 OS=Homo sapiens GN=NRXN1 PE=2 SV=1
Length = 1477
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ +G G
Sbjct: 328 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQHSGIG 383
>sp|Q28146|NRX1A_BOVIN Neurexin-1 OS=Bos taurus GN=NRXN1 PE=1 SV=1
Length = 1530
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ +G G
Sbjct: 344 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQTSGIG 399
>sp|Q9CS84|NRX1A_MOUSE Neurexin-1 OS=Mus musculus GN=Nrxn1 PE=1 SV=3
Length = 1514
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ +G G
Sbjct: 328 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQHSGIG 383
>sp|Q9DDD0|NRX1A_CHICK Neurexin-1 (Fragment) OS=Gallus gallus GN=NRXN1 PE=2 SV=1
Length = 1363
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ +G G
Sbjct: 177 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQHSGIG 232
>sp|Q63372|NRX1A_RAT Neurexin-1 OS=Rattus norvegicus GN=Nrxn1 PE=1 SV=3
Length = 1530
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ +G G
Sbjct: 344 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQHSGIG 399
>sp|Q63374|NRX2A_RAT Neurexin-2 OS=Rattus norvegicus GN=Nrxn2 PE=1 SV=3
Length = 1715
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
+DY+N+++K G V + + L G + + P +F+DN WH + + R +++ G G
Sbjct: 334 ADYVNLSLKSGAVWLVINLGSGAFEALVEPVNGKFNDNAWHDVRVTRNLRQHAGIG 389
>sp|Q9P2S2|NRX2A_HUMAN Neurexin-2 OS=Homo sapiens GN=NRXN2 PE=2 SV=1
Length = 1712
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
+DY+N+++K G V + + L G + + P +F+DN WH + + R +++ G G
Sbjct: 334 ADYVNLSLKSGAVWLVINLGSGAFEALVEPVNGKFNDNAWHDVRVTRNLRQHAGIG 389
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEE-EDEKLEEEEMEEQKEEKK---------EKVEEE 112
+ I++ T K EK E VE+ EDEK+ EE E++K +K + E+E
Sbjct: 4169 KAIEKNTEDEKAVEKNTEDEKAVEQNTEDEKVVEENTEDEKAVEKNTEDEKAVEKNTEDE 4228
Query: 113 EVKEERREGGRG 124
+V EE+ E +G
Sbjct: 4229 KVVEEKIEDEKG 4240
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEE-EDEKLEEEEMEEQKEEKK----EKVEEEEVKEE 117
+ +++ T K E+ E VEE EDEK E+ E++K +K EKV EE++++E
Sbjct: 4179 KAVEKNTEDEKAVEQNTEDEKVVEENTEDEKAVEKNTEDEKAVEKNTEDEKVVEEKIEDE 4238
Query: 118 RRE 120
+ E
Sbjct: 4239 KGE 4241
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEE-EDEKLEEEEMEEQKE--EKKEKVEEEEVKEERR 119
+ +++ T K EK E VEE+ EDEK EE++ EE+ E+ EKV+ ++ K +
Sbjct: 4209 KAVEKNTEDEKAVEKNTEDEKVVEEKIEDEKGEEQKAEEENVGIEEVEKVQIDDYKVSEK 4268
Query: 120 EG 121
+G
Sbjct: 4269 KG 4270
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,704,990
Number of Sequences: 539616
Number of extensions: 2919750
Number of successful extensions: 170093
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3915
Number of HSP's successfully gapped in prelim test: 1338
Number of HSP's that attempted gapping in prelim test: 57066
Number of HSP's gapped (non-prelim): 63860
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)