Query psy6121
Match_columns 126
No_of_seqs 103 out of 484
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:11:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h0b_A Neurexin-1-alpha; B-san 99.7 4.2E-17 1.4E-21 120.9 11.4 77 2-78 32-113 (184)
2 3bod_A Neurexin-1-alpha; neure 99.7 4.1E-16 1.4E-20 116.0 11.7 75 2-78 33-115 (178)
3 2r16_A Neurexin-1-alpha; beta- 99.7 4.3E-16 1.5E-20 116.3 10.9 74 2-78 31-111 (182)
4 1pz7_A Agrin; structural prote 99.7 4.2E-16 1.4E-20 117.8 10.8 74 2-78 52-133 (204)
5 1d2s_A SHBG, sex hormone-bindi 99.7 2.7E-16 9.1E-21 116.7 9.3 75 2-79 30-111 (170)
6 3v64_A Low-density lipoprotein 99.6 1.1E-15 3.8E-20 114.8 10.8 73 2-77 39-119 (191)
7 2r1b_A Neurexin-1-beta, neurex 99.6 1.2E-15 4.2E-20 117.7 11.2 75 2-78 39-121 (220)
8 1f5f_A SHBG, sex hormone-bindi 99.6 7.7E-16 2.6E-20 116.6 9.8 75 2-79 42-123 (205)
9 3sh4_A LG3 peptide; actin disa 99.6 1.9E-15 6.4E-20 113.9 11.1 74 2-78 34-119 (195)
10 2r1d_A Neurexin-1-beta, neurex 99.6 3.7E-15 1.3E-19 116.0 11.1 73 2-76 67-147 (226)
11 3pve_A Agrin, AGRN protein; mR 99.6 3.9E-15 1.3E-19 111.5 10.7 73 2-77 38-119 (189)
12 1dyk_A Laminin alpha 2 chain; 99.6 1.5E-14 5.1E-19 118.2 10.8 74 2-78 61-141 (394)
13 2jd4_A Laminin subunit alpha-1 99.6 2.3E-14 8E-19 116.1 10.8 75 2-79 47-128 (383)
14 1h30_A GAS6, growth-arrest-spe 99.5 4.3E-14 1.5E-18 116.8 9.8 74 2-78 65-145 (422)
15 2jd4_A Laminin subunit alpha-1 99.5 1.1E-13 3.6E-18 112.2 11.3 77 2-78 224-307 (383)
16 3asi_A Neurexin-1-alpha; beta- 99.5 9E-14 3.1E-18 114.1 10.9 76 2-78 30-112 (410)
17 2wjs_A Laminin subunit alpha-2 99.5 1.2E-13 4.1E-18 118.5 10.8 75 2-78 35-116 (608)
18 1dyk_A Laminin alpha 2 chain; 99.5 5E-13 1.7E-17 109.2 11.4 77 2-78 236-319 (394)
19 3qcw_A Neurexin-1-alpha; synap 99.4 3E-13 1E-17 125.2 11.0 75 2-76 258-337 (1245)
20 2wjs_A Laminin subunit alpha-2 99.4 1.1E-12 3.8E-17 112.5 10.4 72 2-76 229-307 (608)
21 3asi_A Neurexin-1-alpha; beta- 99.4 3E-12 1E-16 105.1 10.4 75 2-78 253-335 (410)
22 3qcw_A Neurexin-1-alpha; synap 99.3 8.3E-12 2.8E-16 115.6 10.3 74 2-76 862-942 (1245)
23 1h30_A GAS6, growth-arrest-spe 99.0 2.2E-10 7.4E-15 94.6 6.2 71 2-78 253-340 (422)
24 2erf_A Thrombospondin-1; TSP-1 97.6 0.00055 1.9E-08 52.2 10.1 63 17-81 90-154 (209)
25 1za4_A Thrombospondin 1; TSP-1 97.5 0.00092 3.2E-08 52.5 10.1 62 17-80 100-163 (251)
26 2uur_A Collagen alpha-1(IX) ch 97.4 0.001 3.6E-08 52.1 9.7 66 16-81 115-182 (245)
27 2v73_A CBM40, putative EXO-alp 96.5 0.014 4.9E-07 44.9 8.6 75 2-77 44-129 (191)
28 4b1m_A Levanase; hydrolase, CB 94.4 0.42 1.4E-05 35.2 9.8 68 8-77 84-154 (185)
29 3flp_A SAP-like pentraxin; phy 93.3 0.32 1.1E-05 36.7 7.4 30 49-78 92-123 (217)
30 3kqr_A Serum amyloid P-compone 92.6 0.61 2.1E-05 35.0 8.0 30 49-78 84-115 (204)
31 2gy5_A Angiopoietin-1 receptor 92.5 0.012 4.1E-07 49.3 -1.6 37 7-43 367-405 (423)
32 3pvn_A C-reactive protein; pen 90.6 0.63 2.2E-05 34.8 6.3 30 49-78 86-117 (206)
33 4dqa_A Uncharacterized protein 88.7 0.59 2E-05 38.0 5.1 32 48-79 215-248 (355)
34 2sli_A Intramolecular trans-si 87.9 2.3 7.7E-05 37.6 8.7 60 18-79 67-135 (679)
35 2jkb_A Sialidase B; intramolec 86.7 4.5 0.00016 35.7 9.9 61 17-79 88-157 (686)
36 3zr5_A Galactocerebrosidase; h 82.3 4.2 0.00015 36.0 7.7 56 19-77 565-621 (656)
37 4azz_A Levanase; hydrolase; 1. 80.9 0.37 1.3E-05 34.4 0.0 30 48-77 104-133 (172)
38 1a8d_A Tetanus neurotoxin; clo 65.5 30 0.001 29.7 8.4 60 20-79 128-192 (452)
39 3gbw_A E3 ubiquitin-protein li 51.7 63 0.0021 23.8 7.2 32 48-80 96-127 (164)
40 3v0a_B NTNH; botulinum neuroto 45.1 76 0.0026 30.1 8.0 53 21-77 933-988 (1196)
41 2zzj_A Glucuronan lyase A; bet 40.5 48 0.0016 26.0 5.3 45 19-63 109-158 (238)
42 3bb6_A Uncharacterized protein 39.9 72 0.0024 22.7 5.7 48 17-64 38-90 (127)
43 3dl3_A Tellurite resistance pr 36.4 1.1E+02 0.0037 21.4 6.5 45 16-60 36-85 (119)
44 3tee_A Flagella basal BODY P-r 33.4 66 0.0023 24.3 5.0 38 10-47 164-201 (219)
45 1oq1_A Protein YESU; structura 29.3 2E+02 0.0068 22.3 7.9 27 50-76 154-180 (223)
46 3no8_A BTB/POZ domain-containi 26.9 1.9E+02 0.0067 21.4 7.3 33 48-81 99-131 (176)
47 2xok_H ATP synthase; hydrolase 24.3 1.3E+02 0.0046 21.7 5.1 66 10-77 42-114 (160)
48 3fdr_A Tudor and KH domain-con 24.1 30 0.001 22.2 1.3 13 52-64 40-52 (94)
49 3f95_A Beta-glucosidase; beta- 23.2 83 0.0028 23.6 3.8 36 27-62 100-137 (193)
50 3lag_A Uncharacterized protein 21.9 35 0.0012 22.0 1.3 44 16-60 36-80 (98)
51 1w0p_A Sialidase; hydrolase, n 21.0 1.9E+02 0.0066 25.9 6.3 63 11-78 111-178 (781)
No 1
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=99.72 E-value=4.2e-17 Score=120.95 Aligned_cols=77 Identities=26% Similarity=0.501 Sum_probs=67.2
Q ss_pred eEEeeece-----eeecCCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccc
Q psy6121 2 LTLSTDCW-----LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEE 76 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~ 76 (126)
|+|.|+|. |||.++..|||+|+|.+|+|.+.+++|+|+....+.++...+|||+||+|.+.|+.+.++|+||+..
T Consensus 32 isl~frT~~~~GlLl~~g~~~d~l~l~L~~G~l~~~~~~G~g~~~~~~~~~~~~l~Dg~WH~V~v~r~~~~~~L~VD~~~ 111 (184)
T 2h0b_A 32 ITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGIL 111 (184)
T ss_dssp EEEEEEESCSCEEEEEECCTTEEEEEEEETTEEEEEEEESSCEEEEEECCSSSCSSSSSCEEEEEEEETTEEEEEETTTE
T ss_pred EEEEEEeCCCCEEEEEeCCCCCEEEEEEECCEEEEEEECCCCeEEEEEecCCcccCCCCeEEEEEEEeCCEEEEEEcCce
Confidence 68888875 9998888899999999999999999999986544445567899999999999999999999999876
Q ss_pred cc
Q psy6121 77 KK 78 (126)
Q Consensus 77 ~~ 78 (126)
..
T Consensus 112 ~~ 113 (184)
T 2h0b_A 112 TT 113 (184)
T ss_dssp EE
T ss_pred ee
Confidence 44
No 2
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=99.68 E-value=4.1e-16 Score=116.05 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=64.6
Q ss_pred eEEeeece-----eeec---CCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121 2 LTLSTDCW-----LGDG---SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK 73 (126)
Q Consensus 2 IS~sfrtl-----LLya---G~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd 73 (126)
|+|.|+|. |||. +...|||+|+|.+|+|.+.+++|+++..+. ++...+|||+||+|.+.|+.+.++|+||
T Consensus 33 isl~FrT~~~~GlLl~~~~~~~~~dfi~l~L~~G~l~~~~~~G~~~~~~~--~~~~~vnDg~WH~V~v~r~~~~~~L~VD 110 (178)
T 3bod_A 33 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIE--ESNAIINDGKYHVVRFTRSGGNATLQVD 110 (178)
T ss_dssp EEEEEECCCSSEEEEEEEESSSSCCEEEEEEETTEEEEEEESSSCCEEEE--CCSSCCCSSSCEEEEEEEETTEEEEEET
T ss_pred EEEEEEECCCCEEEEEEcCCCCCCCEEEEEEECCEEEEEEECCCCceEEe--cCCcCccCCCeEEEEEEEeCCEEEEEEe
Confidence 68889875 8883 457899999999999999999999886543 4457899999999999999999999999
Q ss_pred ccccc
Q psy6121 74 EEEKK 78 (126)
Q Consensus 74 ~~~~~ 78 (126)
+....
T Consensus 111 ~~~~~ 115 (178)
T 3bod_A 111 SWPVI 115 (178)
T ss_dssp TSCCE
T ss_pred CCcee
Confidence 97643
No 3
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}
Probab=99.67 E-value=4.3e-16 Score=116.33 Aligned_cols=74 Identities=19% Similarity=0.362 Sum_probs=64.4
Q ss_pred eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121 2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~ 74 (126)
|+|.|+|. |||.+. ..|||+|+|.+|+|.+.|++|+++..+. +...+|||+||+|.+.|+.+.++|+||+
T Consensus 31 isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~~~~~~G~~~~~~~---~~~~lnDg~WH~V~v~r~~~~~~L~VD~ 107 (182)
T 2r16_A 31 VSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLF---AGYNLNDNEWHTVRVVRRGKSLKLTVDD 107 (182)
T ss_dssp EEEEEECSCSSEEEEEEECSSSCCEEEEEEETTEEEEEEESSSCCEEEE---ECSSCCSSSCEEEEEEEETTEEEEEETT
T ss_pred EEEEEEECCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEECCCCceEEE---cCcccCCCCeEEEEEEEECCEEEEEECC
Confidence 78889975 888864 6799999999999999999999886543 2468999999999999999999999999
Q ss_pred cccc
Q psy6121 75 EEKK 78 (126)
Q Consensus 75 ~~~~ 78 (126)
....
T Consensus 108 ~~~~ 111 (182)
T 2r16_A 108 QQAM 111 (182)
T ss_dssp CCEE
T ss_pred ceeE
Confidence 7653
No 4
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=99.67 E-value=4.2e-16 Score=117.84 Aligned_cols=74 Identities=24% Similarity=0.299 Sum_probs=63.9
Q ss_pred eEEeeece-----eeecCC---CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121 2 LTLSTDCW-----LGDGSD---GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK 73 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~---~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd 73 (126)
|+|.|+|. |||.++ ..|||+|+|.+|+|.+.|++|+++..+. +..++|||+||+|.+.|+.+.++|+||
T Consensus 52 is~~frT~~~~GlLl~~g~~~~~~dfl~l~L~~G~l~~~~~~G~g~~~v~---s~~~lnDg~WH~V~v~r~~~~~~L~VD 128 (204)
T 1pz7_A 52 FELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLR---STVPINTNHWTHIKAYRVQREGSLQVG 128 (204)
T ss_dssp EEEEEEECCSSEEEEEESCCSTTCCEEEEEEETTEEEEEEESSSCCEEEE---EEEECCSSSCEEEEEEEETTEEEEEET
T ss_pred EEEEEEcCCCCeEEEEeCCCCCCCCeEEEEEECCEEEEEEECCCCeEEEE---CCcccCCCCeEEEEEEEeCCEEEEEEC
Confidence 67888874 889875 5799999999999999999999886543 246899999999999999999999999
Q ss_pred ccccc
Q psy6121 74 EEEKK 78 (126)
Q Consensus 74 ~~~~~ 78 (126)
+....
T Consensus 129 ~~~~~ 133 (204)
T 1pz7_A 129 NEAPI 133 (204)
T ss_dssp TSCCE
T ss_pred CcceE
Confidence 87543
No 5
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=99.66 E-value=2.7e-16 Score=116.70 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=64.6
Q ss_pred eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121 2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~ 74 (126)
|+|.|+|. |||++. ..||++|+|.+|+|.+.+++|++++.+ .+...+|||+||+|.+.|+.+.++|+||+
T Consensus 30 is~~FrT~~~~GlLly~~~~~~~df~~l~L~~G~l~~~~~~g~~~~~~---~s~~~vnDG~WH~V~v~~~~~~~~L~VD~ 106 (170)
T 1d2s_A 30 SSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTV---GAGPRLDDGRWHQVEVKMEGDSVLLEVDG 106 (170)
T ss_dssp EEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEESSSCEEEE---ECSCCCCSSSCEEEEEEEETTEEEEEETT
T ss_pred EEEEEEeCCCCEEEEEecCCCCCCEEEEEEeCCEEEEEEECCCceEEE---eCCCccCCCCCEEEEEEEeCCEEEEEECC
Confidence 68889875 888865 479999999999999999999987544 23578999999999999999999999999
Q ss_pred cccch
Q psy6121 75 EEKKK 79 (126)
Q Consensus 75 ~~~~~ 79 (126)
.....
T Consensus 107 ~~~~~ 111 (170)
T 1d2s_A 107 EEVLR 111 (170)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 87644
No 6
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A
Probab=99.64 E-value=1.1e-15 Score=114.82 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=63.7
Q ss_pred eEEeeece-----eeecCC---CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121 2 LTLSTDCW-----LGDGSD---GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK 73 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~---~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd 73 (126)
|+|.|+|. |||.++ ..|||+|+|.+|+|.+.|++|+++..+.. ..++|||+||+|.+.|+.+.++|+||
T Consensus 39 isl~frT~~~~GlLl~~~~~~~~~d~l~l~L~~G~l~~~~~~G~~~~~l~s---~~~v~Dg~WH~V~v~r~~~~~~L~VD 115 (191)
T 3v64_A 39 FELSLRTEATQGLVLWIGKAAERADYMALAIVDGHLQLSYDLGSQPVVLRS---TVKVNTNRWLRIRAHREHREGSLQVG 115 (191)
T ss_dssp EEEEEECSCSSEEEEEESCCSTTCCEEEEEEETTEEEEEEESSSCCEEEEE---EEECTTSSCEEEEEEEETTEEEEEET
T ss_pred EEEEEEeCCCCeEEEEeCCCCCCCcEEEEEEECCEEEEEEECCCccEEEec---CccccCCCCEEEEEEEeCCEEEEEEC
Confidence 78888875 888865 57999999999999999999998865432 46899999999999999999999999
Q ss_pred cccc
Q psy6121 74 EEEK 77 (126)
Q Consensus 74 ~~~~ 77 (126)
+...
T Consensus 116 ~~~~ 119 (191)
T 3v64_A 116 NEAP 119 (191)
T ss_dssp TSCC
T ss_pred Ceee
Confidence 9754
No 7
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=99.64 E-value=1.2e-15 Score=117.75 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=63.8
Q ss_pred eEEeeece-----eeec--C-CCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121 2 LTLSTDCW-----LGDG--S-DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK 73 (126)
Q Consensus 2 IS~sfrtl-----LLya--G-~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd 73 (126)
|+|.|+|. |||. . ...|||+|+|.+|+|.+.|++|+++..+. .+...+|||+||+|.+.|+.+.++|+||
T Consensus 39 isl~FrT~~~~GlLly~~~~~~~~dfi~LeL~~G~l~~~~~~G~~~~~~~--~~~~~vnDG~WH~V~v~r~~~~~~L~VD 116 (220)
T 2r1b_A 39 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIE--ESNAIINDGKYHVVRFTRSGGNATLQVD 116 (220)
T ss_dssp EEEEEECCCSSEEEEEEEESTTCCCEEEEEEETTEEEEEEESSSSCEEEE--CTTCCCCSSSCEEEEEEEETTEEEEEET
T ss_pred EEEEEEeCCCCEEEEEecCCCCCCCeEEEEEECCEEEEEEECCCCceEEE--eCceEecCCceEEEEEEEeCCEEEEEEC
Confidence 78899875 8884 3 36799999999999999999999886543 3346799999999999999999999999
Q ss_pred ccccc
Q psy6121 74 EEEKK 78 (126)
Q Consensus 74 ~~~~~ 78 (126)
+....
T Consensus 117 ~~~~~ 121 (220)
T 2r1b_A 117 SWPVI 121 (220)
T ss_dssp TSCCE
T ss_pred Cccee
Confidence 98543
No 8
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=99.64 E-value=7.7e-16 Score=116.63 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=64.8
Q ss_pred eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121 2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~ 74 (126)
|+|.|+|. |||++. ..|||+|+|.+|+|.+.+++|++++.+ .+...+|||+||+|.+.|+.+.++|+||+
T Consensus 42 is~~frT~~~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~g~~~~~~---~s~~~vnDG~WH~V~v~r~~~~~~L~VD~ 118 (205)
T 1f5f_A 42 SSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTV---GAGPRLDDGRWHQVEVKMEGDSVLLEVDG 118 (205)
T ss_dssp EEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEESSSCEEEE---ECSCCCCSSSCEEEEEEEETTEEEEEETT
T ss_pred EEEEEEeCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEECCCceEEE---ecCCccCCCCCEEEEEEEeCCEEEEEECC
Confidence 78889875 888865 469999999999999999999987544 23578999999999999999999999999
Q ss_pred cccch
Q psy6121 75 EEKKK 79 (126)
Q Consensus 75 ~~~~~ 79 (126)
.....
T Consensus 119 ~~~~~ 123 (205)
T 1f5f_A 119 EEVLR 123 (205)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 87654
No 9
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=99.63 E-value=1.9e-15 Score=113.91 Aligned_cols=74 Identities=20% Similarity=0.368 Sum_probs=63.5
Q ss_pred eEEeeece-----eeecC-------CCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEE
Q psy6121 2 LTLSTDCW-----LGDGS-------DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69 (126)
Q Consensus 2 IS~sfrtl-----LLyaG-------~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~s 69 (126)
|+|.|+|. |||.+ ...|||+|+|.+|+|.+.|++|++++.+. +..++|||+||+|.+.|+.+.++
T Consensus 34 is~~frT~~~~GlLl~~~~~~~~~~~~~d~l~l~L~~G~l~~~~~~G~g~~~~~---s~~~l~Dg~WH~V~v~r~~~~~~ 110 (195)
T 3sh4_A 34 IELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLV---SEDPINDGEWHRVTALREGRRGS 110 (195)
T ss_dssp EEEEEEECCSSEEEEEECCCTTCTTSTTCEEEEEEETTEEEEEEECSSCEEEEE---EEEECCSSSCEEEEEEEETTEEE
T ss_pred EEEEEEeCCCCcEEEEecccccCCCCCCcEEEEEEeCCEEEEEEECCCCcEEEE---cCceeCCCCeEEEEEEEeCCEEE
Confidence 78889875 88875 25799999999999999999999886543 24689999999999999999999
Q ss_pred EEecccccc
Q psy6121 70 GCGKEEEKK 78 (126)
Q Consensus 70 L~vd~~~~~ 78 (126)
|+||+....
T Consensus 111 L~VD~~~~~ 119 (195)
T 3sh4_A 111 IQVDGEELV 119 (195)
T ss_dssp EEETTCCCE
T ss_pred EEECCeeee
Confidence 999997643
No 10
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=99.61 E-value=3.7e-15 Score=115.96 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=63.3
Q ss_pred eEEeeece-----eeecC---CCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121 2 LTLSTDCW-----LGDGS---DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK 73 (126)
Q Consensus 2 IS~sfrtl-----LLyaG---~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd 73 (126)
|+|.|+|. |||.+ ...|||+|+|.+|+|.+.|++|+++..+. .+...+|||+||+|.+.|+.+.++|+||
T Consensus 67 isl~FrT~~~~GlLl~~~~~~~~~dfi~L~L~~G~l~~~~~~G~~~~~~~--~~~~~vnDG~WH~V~v~r~~~~~~L~VD 144 (226)
T 2r1d_A 67 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIE--ESNAIINDGKYHVVRFTRSGGNATLQVD 144 (226)
T ss_dssp EEEEEECCCSSEEEEEEEECTTCCCEEEEEEETTEEEEEEESSSCEEEEE--CCSSCCCSSSCEEEEEEEETTEEEEEET
T ss_pred EEEEEEeCCCCEEEEEecCCCCCCCEEEEEEECCEEEEEEECCCCcEEEE--eCCeEecCCCCEEEEEEEeCCEEEEEEc
Confidence 68899875 88853 36799999999999999999999887553 3346899999999999999999999999
Q ss_pred ccc
Q psy6121 74 EEE 76 (126)
Q Consensus 74 ~~~ 76 (126)
+..
T Consensus 145 ~~~ 147 (226)
T 2r1d_A 145 SWP 147 (226)
T ss_dssp TSC
T ss_pred Ccc
Confidence 975
No 11
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=99.61 E-value=3.9e-15 Score=111.49 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=63.3
Q ss_pred eEEeeece-----eeecCC----CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEe
Q psy6121 2 LTLSTDCW-----LGDGSD----GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~----~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~v 72 (126)
|+|.|+|. |||+++ ..|||+|+|.+|++.+.+++|+++..+. +..++|||+||+|.+.|+.+.++|+|
T Consensus 38 isl~frT~~~~GlLl~~~~~~~~~~d~l~l~L~~G~l~~~~~~G~g~~~l~---s~~~l~Dg~WH~V~v~r~~~~~~L~V 114 (189)
T 3pve_A 38 LEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAIIR---SKEPIALGTWVRVFLERNGRKGALQV 114 (189)
T ss_dssp EEEEEEESSSCEEEEEEESCC-CCSCEEEEEEETTEEEEEEESSSCEEEEE---CSSCCCTTSEEEEEEEEETTEEEEEE
T ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCeEEEEEECCEEEEEEecCCCCEEEE---cCcccCCCCEEEEEEEEeCCEEEEEE
Confidence 67888874 888864 4799999999999999999999876443 35789999999999999999999999
Q ss_pred ccccc
Q psy6121 73 KEEEK 77 (126)
Q Consensus 73 d~~~~ 77 (126)
|+...
T Consensus 115 D~~~~ 119 (189)
T 3pve_A 115 GDGPR 119 (189)
T ss_dssp TTSCC
T ss_pred CCcee
Confidence 99764
No 12
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=99.56 E-value=1.5e-14 Score=118.23 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=64.4
Q ss_pred eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121 2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~ 74 (126)
|+|.|+|. |||+++ ..|||+|+|.+|+|.+.|++|+++..+. +...+|||+||+|.+.|+.+.++|+||+
T Consensus 61 is~~frT~~~~GlLly~~~~~~~dfi~l~L~~G~l~~~~~~g~g~~~~~---~~~~~~Dg~WH~V~v~r~~~~~~L~VD~ 137 (394)
T 1dyk_A 61 IELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDTSTM---IPTKINDGQWHKIKIVRVKQEGILYVDD 137 (394)
T ss_dssp EEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEESSSCEEEEE---CCSCCCSSSCEEEEEEEETTEEEEEETT
T ss_pred EEEEEEeCCCCeEEEEcCCCCCCceEEEEEECCEEEEEEECCCCceEEE---cccccCCCCEEEEEEEEeCCEEEEEEcC
Confidence 68888875 899865 5799999999999999999999987553 2468999999999999999999999998
Q ss_pred cccc
Q psy6121 75 EEKK 78 (126)
Q Consensus 75 ~~~~ 78 (126)
....
T Consensus 138 ~~~~ 141 (394)
T 1dyk_A 138 ASSQ 141 (394)
T ss_dssp EEEE
T ss_pred cccc
Confidence 7654
No 13
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=99.55 E-value=2.3e-14 Score=116.06 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=64.6
Q ss_pred eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121 2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~ 74 (126)
|+|.|+|. |||.++ ..|||+|+|.+|+|.+.+++|+++..+. +...+|||+||+|.+.|+.+.++|+||+
T Consensus 47 is~~frT~~~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~g~~~~~~~---~~~~~~Dg~WH~V~v~r~~~~~~L~VD~ 123 (383)
T 2jd4_A 47 VQLSIRTFASSGLIYYVAHQNQMDYATLQLQEGRLHFMFDLGKGRTKVS---HPALLSDGKWHTVKTEYIKRKAFMTVDG 123 (383)
T ss_dssp EEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEECSSCEEEEE---CCCCCTTSSCEEEEEEEETTEEEEEETT
T ss_pred EEEEEEcCCCCeEEEEeCCCCCCcEEEEEEECCEEEEEEECCCCeEEEe---CcceecCCCcEEEEEEEeCCEEEEEEcC
Confidence 67888875 888864 4799999999999999999999887543 2468999999999999999999999999
Q ss_pred cccch
Q psy6121 75 EEKKK 79 (126)
Q Consensus 75 ~~~~~ 79 (126)
.....
T Consensus 124 ~~~~~ 128 (383)
T 2jd4_A 124 QESPS 128 (383)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 76543
No 14
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=99.52 E-value=4.3e-14 Score=116.84 Aligned_cols=74 Identities=9% Similarity=0.120 Sum_probs=63.6
Q ss_pred eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121 2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~ 74 (126)
|+|.|+|. |||++. ..|||+|+|.+|+|.+.|++|+++..+ .+...+|||+||+|.+.|+.+.++|+||+
T Consensus 65 is~~FrT~~~~GlLly~~~~~~~df~~l~L~~G~l~~~~~~g~~~~~~---~~~~~~nDg~WH~V~v~r~~~~~~L~VD~ 141 (422)
T 1h30_A 65 AEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVT---SSGPVINHGMWQTISVEELARNLVIKVNR 141 (422)
T ss_dssp EEEEEEECCSSEEEEEEESCTTSEEEEEEEETTEEEEEEEETTEEEEE---EEEEECCSSCCEEEEEEECSSEEEEEETT
T ss_pred EEEEEEeCCCCeEEEEECCCCCCcEEEEEEECCEEEEEEECCCCcEEE---ecCceecCCCCEEEEEEEcCCEEEEEECC
Confidence 78899875 889865 479999999999999999999987533 23468999999999999999999999999
Q ss_pred cccc
Q psy6121 75 EEKK 78 (126)
Q Consensus 75 ~~~~ 78 (126)
....
T Consensus 142 ~~~~ 145 (422)
T 1h30_A 142 DAVM 145 (422)
T ss_dssp EEEE
T ss_pred eeeE
Confidence 7644
No 15
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=99.51 E-value=1.1e-13 Score=112.19 Aligned_cols=77 Identities=21% Similarity=0.275 Sum_probs=64.9
Q ss_pred eEEeeece-----eeecCC-CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCC-CcccCCCCceEEEEEEeceeEEEEecc
Q psy6121 2 LTLSTDCW-----LGDGSD-GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPN-RLRFDDNQWHHLSIHRRIQEGTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~-~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s-~~~lnDgqWH~V~v~R~~r~~sL~vd~ 74 (126)
|+|.|+|. |||.++ ..|||+|+|.+|+|.+.+++|++++.+...+. ...+|||+||+|.+.|+.+.++|.||+
T Consensus 224 isl~frT~~~~GlLl~~~~~~~d~l~l~L~~G~l~~~~~~g~g~~~~~~~~~~~~~l~DG~WH~V~l~~~~~~~~L~VD~ 303 (383)
T 2jd4_A 224 ITLEFRTTSKNGVLLGISSAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDG 303 (383)
T ss_dssp EEEEEEESCSCEEEEEEECSSSCEEEEEEETTEEEEEEESSSCEEEEEECCSSTTGGGSSSCEEEEEEEETTEEEEEETT
T ss_pred EEEEEEeCCCCEEEEEecCCCCcEEEEEEECCEEEEEEECCCCcEEEEEecCCCccccCCCcEEEEEEEcCCEEEEEECC
Confidence 68889875 888754 67999999999999999999998776554332 357999999999999999999999999
Q ss_pred cccc
Q psy6121 75 EEKK 78 (126)
Q Consensus 75 ~~~~ 78 (126)
....
T Consensus 304 ~~~~ 307 (383)
T 2jd4_A 304 NSVR 307 (383)
T ss_dssp EEEE
T ss_pred eecc
Confidence 7643
No 16
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=99.51 E-value=9e-14 Score=114.14 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=63.3
Q ss_pred eEEeeece-----eeecC-CCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEecee-EEEEecc
Q psy6121 2 LTLSTDCW-----LGDGS-DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE-GTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLyaG-~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~-~sL~vd~ 74 (126)
|+|.|+|. |||.+ +..|||+|+|.+|+|.+.|++|+|+..+.. .+..++|||+||+|.+.|+.+. ++|.||+
T Consensus 30 is~~frT~~~~GlLly~~~~~~dfi~l~L~~G~l~~~~~~G~g~~~~~~-~s~~~vnDg~WH~V~v~r~~~~~~~l~VD~ 108 (410)
T 3asi_A 30 LFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKG-SSNKPLNDNQWHNVMISRDTSNLHTVKIDT 108 (410)
T ss_dssp EEEEEECSCSCEEEEEEEBSTTCEEEEEEETTEEEEEEESSSCEEEEEC-CCSSCSCSSSCEEEEEEECTTCEEEEEETT
T ss_pred EEEEEEeCCCCeEEEEeCCCCCCEEEEEEECCEEEEEEECCCCcEEEEe-ccCcEeCCCCeEEEEEEEcCCceEEEEECC
Confidence 67888874 88864 468999999999999999999999865542 3457899999999999999876 8999998
Q ss_pred cccc
Q psy6121 75 EEKK 78 (126)
Q Consensus 75 ~~~~ 78 (126)
....
T Consensus 109 ~~~~ 112 (410)
T 3asi_A 109 KITT 112 (410)
T ss_dssp EEEE
T ss_pred Eece
Confidence 7543
No 17
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=118.49 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=65.3
Q ss_pred eEEeeece-----eeecCCC--CCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121 2 LTLSTDCW-----LGDGSDG--SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~~--~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~ 74 (126)
|+|.|+|. |||.++. .|||+|+|.+|+|.+.|++|+|+..+.. +...+|||+||+|.+.|+.+.++|+||+
T Consensus 35 isl~FrT~~~~glLly~~~~~~~dfl~l~L~~G~l~~~~~~G~g~~~l~~--~~~~~~dg~WH~V~v~r~~~~~~l~Vd~ 112 (608)
T 2wjs_A 35 IVVHVKTAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDVGSGVGRVEY--PDLTIDDSYWYRIEASRTGRNGSISVRA 112 (608)
T ss_dssp EEEEEEESCSCEEEEEEECSSCSCEEEEEEETTEEEEEEESSSCEEEEEC--CSCCCTTSCCEEEEEEEETTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEeCCCCCCcEEEEEEECCEEEEEEECCCCceEEee--CCccccCCceEEEEEEEeCCEEEEEEec
Confidence 78889874 9998764 8999999999999999999999875542 3468999999999999999999999998
Q ss_pred cccc
Q psy6121 75 EEKK 78 (126)
Q Consensus 75 ~~~~ 78 (126)
....
T Consensus 113 ~~~~ 116 (608)
T 2wjs_A 113 LDGP 116 (608)
T ss_dssp SSST
T ss_pred ccCc
Confidence 7643
No 18
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=99.45 E-value=5e-13 Score=109.18 Aligned_cols=77 Identities=10% Similarity=0.108 Sum_probs=64.3
Q ss_pred eEEeeece-----eeec-CCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcC-CCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121 2 LTLSTDCW-----LGDG-SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRP-NRLRFDDNQWHHLSIHRRIQEGTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLya-G~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~-s~~~lnDgqWH~V~v~R~~r~~sL~vd~ 74 (126)
|+|.|+|. |||. +...||++|+|.+|+|.+.+++|++...+.+.+ +...+|||+||+|.+.|+.+.++|.||+
T Consensus 236 is~~frT~~~~GlLl~~~~~~~~~l~l~L~~G~l~~~~~~g~~~~~~~~~~~~~~~l~DG~WH~V~v~~~~~~~~L~VD~ 315 (394)
T 1dyk_A 236 VEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDG 315 (394)
T ss_dssp EEEEEEESCSCEEEEEEECSSSCEEEEEEETTEEEEEEESSSCCEEEEECCCSTTSTTSSSCEEEEEEEETTEEEEEETT
T ss_pred EEEEEEeCCCCEEEEEecCCCCCEEEEEEECCEEEEEEECCCCcEEEEEecCCCccccCCceEEEEEEEeCCEEEEEECC
Confidence 67888875 8887 446799999999999999999998876554432 2467999999999999999999999999
Q ss_pred cccc
Q psy6121 75 EEKK 78 (126)
Q Consensus 75 ~~~~ 78 (126)
....
T Consensus 316 ~~~~ 319 (394)
T 1dyk_A 316 NQVD 319 (394)
T ss_dssp EEEE
T ss_pred cccc
Confidence 7543
No 19
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=99.45 E-value=3e-13 Score=125.23 Aligned_cols=75 Identities=27% Similarity=0.513 Sum_probs=67.1
Q ss_pred eEEeeece-----eeecCCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccc
Q psy6121 2 LTLSTDCW-----LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEE 76 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~ 76 (126)
|+|.|+|. |||+|+..|||+|+|++|+|.+.+++|+|++...+.++...+|||+||+|.+.|..+.++|+||+..
T Consensus 258 i~l~FrT~~~~GlLl~~g~~~d~l~L~L~~G~l~l~~~lG~g~~~~~~~~~~~~l~Dg~WH~V~v~r~~~~~~l~VD~~~ 337 (1245)
T 3qcw_A 258 ITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGIL 337 (1245)
T ss_dssp EEEEEECSCSCEEEEEECSSSEEEEEEEETTEEEEEEEESSCCEEEEECCCSSCSSSSSCEEEEEEEETTEEEEEESSSC
T ss_pred EEEEEEeCCCCceEEEecCCCCEEEEEEECCEEEEEEEcCCCeEEEEEccCCcccCCCCEEEEEEEEeCCEEEEEECCcc
Confidence 78899974 9999889999999999999999999999987655555567899999999999999999999999864
No 20
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}
Probab=99.40 E-value=1.1e-12 Score=112.48 Aligned_cols=72 Identities=15% Similarity=0.301 Sum_probs=61.9
Q ss_pred eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121 2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~ 74 (126)
|+|.|+|. |||++. ..|||+|+|.+|+|.+.+++|+++..+. +...+|||+||+|.+.|+.+.++|+||+
T Consensus 229 isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~~~~~~g~~~~~l~---s~~~~nDg~WH~V~v~r~~~~~~L~VD~ 305 (608)
T 2wjs_A 229 VMFKFRTFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTSVV---SNQNHNDGKWKAFTLSRIQKQANISIVD 305 (608)
T ss_dssp EEEEEEESCSEEEEEEEECTTSSSEEEEEEETTEEEEEEECSSCEEEEE---EEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEeCCCCeEEEEecCCCCCceEEEEEECCEEEEEEECCCCcEEEE---cCccccCCceEEEEEEEecceEEEEEec
Confidence 68888875 888854 5799999999999999999999886443 2468999999999999999999999998
Q ss_pred cc
Q psy6121 75 EE 76 (126)
Q Consensus 75 ~~ 76 (126)
..
T Consensus 306 ~~ 307 (608)
T 2wjs_A 306 ID 307 (608)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 21
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=99.36 E-value=3e-12 Score=105.08 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=62.2
Q ss_pred eEEeeece-----eeecCC---CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121 2 LTLSTDCW-----LGDGSD---GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK 73 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~---~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd 73 (126)
|+|.|+|. |||.+. ..|||+|+|.+|+|.+.+++|++++.+. .+...+|||+||+|.+.|..+.++|.||
T Consensus 253 i~l~frT~~~~GlLl~~~~~~~~~~~l~l~L~~G~l~~~~~~g~~~~~~~--~~~~~l~DG~wH~V~v~r~~~~~~L~VD 330 (410)
T 3asi_A 253 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIE--ESNAIINDGKYHVVRFTRSGGNATLQVD 330 (410)
T ss_dssp EEEEEECCCSEEEEEEEEECTTCCCEEEEEEETTEEEEEEESSSSCEEEE--CCSCCCCSSSCEEEEEEEETTEEEEEET
T ss_pred EEEEEEeCCCCEEEEEEecCCCCCceEEEEEeCCEEEEEEECCCCceEEe--cCccCcCCCCeEEEEEEEECCEEEEEEC
Confidence 57788764 888643 3699999999999999999999876443 3346899999999999999999999999
Q ss_pred ccccc
Q psy6121 74 EEEKK 78 (126)
Q Consensus 74 ~~~~~ 78 (126)
+....
T Consensus 331 ~~~~~ 335 (410)
T 3asi_A 331 SWPVI 335 (410)
T ss_dssp TSCCE
T ss_pred Cccee
Confidence 97543
No 22
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=99.30 E-value=8.3e-12 Score=115.63 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=62.5
Q ss_pred eEEeeece-----eeec-CCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEecee-EEEEecc
Q psy6121 2 LTLSTDCW-----LGDG-SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE-GTGCGKE 74 (126)
Q Consensus 2 IS~sfrtl-----LLya-G~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~-~sL~vd~ 74 (126)
|+|.|+|. |||. +...|||+|+|.+|+|.+.|++|+|+..+.+ .+..++|||+||+|.+.|+.+. .+|+||+
T Consensus 862 is~~frT~~~~GlLly~~~~~~dfi~l~L~~G~l~~~~~~G~g~~~~~~-~s~~~vnDg~WH~V~~~~~~~~~~~L~VD~ 940 (1245)
T 3qcw_A 862 LFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKG-SSNKPLNDNQWHNVMISRDTSNLHTVKIDT 940 (1245)
T ss_dssp EEEEEECSCSCEEEEEEEESTTCEEEEEEETTEEEEEEESSSCCEEEEC-CCSSCSCSSSCEEEEEEECTTCEEEEEETT
T ss_pred EEEEEEeCCCCEEEEEeCCCCCCEEEEEEeCCEEEEEEECCCCcEEEEe-cCcccccCCCeEEEEEEEeCCeeEEEEECC
Confidence 78888875 7876 4568999999999999999999999875543 3457899999999999999865 7899999
Q ss_pred cc
Q psy6121 75 EE 76 (126)
Q Consensus 75 ~~ 76 (126)
..
T Consensus 941 ~~ 942 (1245)
T 3qcw_A 941 KI 942 (1245)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 23
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=99.04 E-value=2.2e-10 Score=94.61 Aligned_cols=71 Identities=15% Similarity=0.002 Sum_probs=54.7
Q ss_pred eEEeeece-----eeecCC-C--CCeEEEEEeCCEE-------EEEEEcCCceEEEEEcCCCcccCCCCceEE--EEEEe
Q psy6121 2 LTLSTDCW-----LGDGSD-G--SDYLNVAIKDGGV-------AINLKLAMGKLDMYIRPNRLRFDDNQWHHL--SIHRR 64 (126)
Q Consensus 2 IS~sfrtl-----LLyaG~-~--~DFIaLeL~~G~L-------~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V--~v~R~ 64 (126)
|+|.|+|. |||.++ . .|||+|+|.+|++ .+.++.|+++. ..+ ...+|||+||+| .+.|+
T Consensus 253 is~~fRT~~~~GlLl~~~~~~~~~d~l~l~L~~G~le~~~~~~~l~~~~~~g~~-~~~---~~~l~DG~WH~V~~~l~~~ 328 (422)
T 1h30_A 253 VVAHIRPAADTGVLFALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVEHTAL-ALM---EIKVCDGQEHVVTVSLRDG 328 (422)
T ss_dssp EEEEEEESSSCEEEEEEEEGGGTEEEEEEEEESCC-----CCCEEEEEETTEEE-EEE---ECCTTSSCCEEEEEEEETT
T ss_pred EEEEEecCCCCEEEEEecCCCcCCCcEEEEEEcCccccccccceEEEEeCCeeE-EEe---eecccCCCEeEeEEEEEEe
Confidence 67888875 888753 2 6999999999998 68888888763 222 368999999999 88887
Q ss_pred ceeEEEEecccccc
Q psy6121 65 IQEGTGCGKEEEKK 78 (126)
Q Consensus 65 ~r~~sL~vd~~~~~ 78 (126)
.+. |.||.....
T Consensus 329 ~~~--L~vD~~~~~ 340 (422)
T 1h30_A 329 EAT--LEVDGTRGQ 340 (422)
T ss_dssp EEE--EEETTEECE
T ss_pred ccE--EEEeCCccc
Confidence 766 888886543
No 24
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A
Probab=97.60 E-value=0.00055 Score=52.17 Aligned_cols=63 Identities=8% Similarity=0.130 Sum_probs=47.7
Q ss_pred CCeEEEEEeCC--EEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccccchhc
Q psy6121 17 SDYLNVAIKDG--GVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRR 81 (126)
Q Consensus 17 ~DFIaLeL~~G--~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~~ 81 (126)
.-++.|.+... .+.+.|+..+....... . ..++.|++||+|.+.-.+..++|.||-.....+.
T Consensus 90 ~~ql~l~l~g~~~~l~~~y~~~g~~~~~~f-~-~v~l~dg~WH~l~l~V~~~~v~L~vDC~~~~~~~ 154 (209)
T 2erf_A 90 GQVFSVVSNGKAGTLDLSLTVQGKQHVVSV-E-EALLATGQWKSITLFVQEDRAQLYIDCEKMENAE 154 (209)
T ss_dssp CEEEEEEEETTTTEEEEEEEETTEEEEEEE-S-SCCCCSSSEEEEEEEEETTEEEEEETTTEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEEcCCCCEEEEEE-e-ccccCCCcEEEEEEEEECCEEEEEEcCeEeEeEE
Confidence 67899998654 68888865443433332 2 3579999999999999999999999998765443
No 25
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A
Probab=97.48 E-value=0.00092 Score=52.54 Aligned_cols=62 Identities=10% Similarity=0.171 Sum_probs=45.8
Q ss_pred CCeEEEEEeC--CEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccccchh
Q psy6121 17 SDYLNVAIKD--GGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKR 80 (126)
Q Consensus 17 ~DFIaLeL~~--G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~ 80 (126)
.-++.|.+.. ..|.|.|...++...... . ..++.|++||+|.+.-.+..++|.||-.....+
T Consensus 100 ~~ql~l~~~G~~~~l~~~Y~~~g~~~~~~f-~-~~~L~Dg~WH~lalsV~~~~VtLyvDC~~~~~~ 163 (251)
T 1za4_A 100 GQVFSVVSNGKAGTLDLSLTVQGKQHVVSV-E-EALLATGQWKSITLFVQEDRAQLYIDCEKMENA 163 (251)
T ss_dssp CEEEEEEEETTTTEEEEEEEETTEEEEEEE-S-SCCCCSSSCEEEEEEEETTEEEEEETTSCCEEE
T ss_pred EEEEEEEECCCCcEEEEEEEcCCCeeeEEE-e-cccccCCCEEEEEEEEECCEEEEEECCccccee
Confidence 4577777644 368888876544432333 2 357999999999999999999999999876544
No 26
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}
Probab=97.41 E-value=0.001 Score=52.13 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=46.4
Q ss_pred CCCeEEEEEeCC--EEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccccchhc
Q psy6121 16 GSDYLNVAIKDG--GVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRR 81 (126)
Q Consensus 16 ~~DFIaLeL~~G--~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~~ 81 (126)
+..++.|.|..+ .+.+.+.-..|...........++.||+||+|.+.-.+..++|.||=.....+.
T Consensus 115 ~~~qlgv~l~g~~~~l~~~y~~~~g~~q~v~F~~~~~L~Dg~WHklalsV~~~~VtLyvDC~~~~~~~ 182 (245)
T 2uur_A 115 GKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLP 182 (245)
T ss_dssp SCEEEEEEEEGGGTEEEEEEEBTTSCEEEEEECCCGGGCSSSCEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEecCCCCCeeEEEecCCccccCCCEEEEEEEEECCEEEEEEecCcccccc
Confidence 456888888754 477776544443333333321259999999999999999999999988765443
No 27
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}
Probab=96.49 E-value=0.014 Score=44.89 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=50.6
Q ss_pred eEEeeece------eeecCC---CCCeEEEEEeCCEEEEEEEcCCceEE-EEEcCCCcccCCCCceEEEEEEec-eeEEE
Q psy6121 2 LTLSTDCW------LGDGSD---GSDYLNVAIKDGGVAINLKLAMGKLD-MYIRPNRLRFDDNQWHHLSIHRRI-QEGTG 70 (126)
Q Consensus 2 IS~sfrtl------LLyaG~---~~DFIaLeL~~G~L~l~~nlGsG~~~-~~i~~s~~~lnDgqWH~V~v~R~~-r~~sL 70 (126)
|.+.|++- ||-.++ ...|+.|.|.+|.+.+.+.--++... ....+.....+| +||+|.+.-+. ...+|
T Consensus 44 I~v~fks~~~~~q~LfSIsN~k~~n~yf~lyi~~g~lg~e~R~~~~~~~~~~~~~a~v~~~~-~wntvaf~~d~~~~~~l 122 (191)
T 2v73_A 44 IVTRFNMNDTSIQSLIGLSDGNKANNYFSLYVSGGKVGYELRRQEGNGDFNVHHSADVTFNR-GINTLALKIEKGIGAKI 122 (191)
T ss_dssp EEEEEEECCCSCEEEEEEECTTCSSCEEEEEECSSEEEEEEEECTTSSCEEEEEEEECCCCS-SCEEEEEEEETTTEEEE
T ss_pred EEEEEecCCCcceEEEEccCCCCccceEEEEEeCCEEEEEEecCCCceeeeeecccceecCC-ceEEEEEEEcCCccEEE
Confidence 55666542 665544 45799999999998888886333321 112233344444 99999998875 58999
Q ss_pred Eeccccc
Q psy6121 71 CGKEEEK 77 (126)
Q Consensus 71 ~vd~~~~ 77 (126)
-+|++.-
T Consensus 123 y~NG~~V 129 (191)
T 2v73_A 123 FLNGSLV 129 (191)
T ss_dssp EETTEEE
T ss_pred EECCEEE
Confidence 9998754
No 28
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=94.41 E-value=0.42 Score=35.18 Aligned_cols=68 Identities=9% Similarity=-0.139 Sum_probs=45.0
Q ss_pred ceeeec-CCCCCeEEEEEeC--CEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEeccccc
Q psy6121 8 CWLGDG-SDGSDYLNVAIKD--GGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEK 77 (126)
Q Consensus 8 tlLLya-G~~~DFIaLeL~~--G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~ 77 (126)
|++|.+ .+...+-.+.|.. +.+.+.-..++....+.. ....+..++||+++|...+..+++.||+..-
T Consensus 84 Gi~fR~~~d~~~gY~~~i~~~~~~~~l~k~~~g~~~~L~~--~~~~~~~g~w~~l~I~~~G~~i~~~vnG~~v 154 (185)
T 4b1m_A 84 ALMFRSDKDAKNGYLANVDAKHDLVKFFKFENGAASVIAE--YKTPIDVNKKYHLKTEAEGDRFKIYLDDRLV 154 (185)
T ss_dssp EEEEEECTTSSSEEEEEEETTTTEEEEEEEETTEEEEEEE--EECCCCSSCCEEEEEEEETTEEEEEETTEEE
T ss_pred EEEEEEcCCCCCcEEEEEECCCCEEEEEEEeCCcEEEeee--ccccCCCCCeEEEEEEEECCEEEEEECCEEE
Confidence 346666 4455777777765 455443323332221211 1247889999999999999999999999753
No 29
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A
Probab=93.26 E-value=0.32 Score=36.67 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=25.7
Q ss_pred cccCCCCceEEEEEEece--eEEEEecccccc
Q psy6121 49 LRFDDNQWHHLSIHRRIQ--EGTGCGKEEEKK 78 (126)
Q Consensus 49 ~~lnDgqWH~V~v~R~~r--~~sL~vd~~~~~ 78 (126)
..++|++||+|.++.+.. ..+|-||+....
T Consensus 92 ~~~~~g~W~Hv~~t~d~~~G~~~lYvdG~~~~ 123 (217)
T 3flp_A 92 IEIELGQWYHVCHVWSGVDGRMAVYANGSPCG 123 (217)
T ss_dssp EECCTTSCEEEEEEEETTTTEEEEEETTEEEE
T ss_pred cccCCCCEEEEEEEEECCCCEEEEEECCEEec
Confidence 469999999999999874 678999998764
No 30
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A*
Probab=92.55 E-value=0.61 Score=34.98 Aligned_cols=30 Identities=3% Similarity=-0.274 Sum_probs=25.3
Q ss_pred cccCCCCceEEEEEEece--eEEEEecccccc
Q psy6121 49 LRFDDNQWHHLSIHRRIQ--EGTGCGKEEEKK 78 (126)
Q Consensus 49 ~~lnDgqWH~V~v~R~~r--~~sL~vd~~~~~ 78 (126)
.+++|++||+|.++.+.. ...|-||+....
T Consensus 84 ~~~~~g~W~Hv~~twd~~~G~~~lyvdG~~~~ 115 (204)
T 3kqr_A 84 VIEKFPAPVHICVSWESSSGIAEFWINGTPLV 115 (204)
T ss_dssp CCCCSSCCEEEEEEEETTTCEEEEEETTEECC
T ss_pred cccCCCceEEEEEEEECCCCeEEEEECCEEee
Confidence 468999999999999865 678999998654
No 31
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=92.55 E-value=0.012 Score=49.29 Aligned_cols=37 Identities=16% Similarity=-0.024 Sum_probs=30.9
Q ss_pred eceeeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEE
Q psy6121 7 DCWLGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMY 43 (126)
Q Consensus 7 rtlLLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~ 43 (126)
.|+++|.++ ..|||+|+|.+|++.+.|++|+.+..+.
T Consensus 367 ~G~cl~~~~~~~~d~ial~l~~G~v~~syd~G~~~~~v~ 405 (423)
T 2gy5_A 367 DGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVN 405 (423)
T ss_dssp TSCEECCSEEEECSSCEEEECCEEEECGGGCEEEEEEEE
T ss_pred CeEEEeCCCcCcccceeeeEEeeeEEEeecCCCcceEEE
Confidence 456888765 6799999999999999999998876554
No 32
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A
Probab=90.60 E-value=0.63 Score=34.81 Aligned_cols=30 Identities=3% Similarity=-0.270 Sum_probs=25.4
Q ss_pred cccCCCCceEEEEEEece--eEEEEecccccc
Q psy6121 49 LRFDDNQWHHLSIHRRIQ--EGTGCGKEEEKK 78 (126)
Q Consensus 49 ~~lnDgqWH~V~v~R~~r--~~sL~vd~~~~~ 78 (126)
.+++|++||+|.++.+.. .++|-||+....
T Consensus 86 ~~~~~g~W~Hv~~twd~~~G~~~lyvdG~~~~ 117 (206)
T 3pvn_A 86 VPEVTVAPVHICTSWESASGIVEFWVDGKPRV 117 (206)
T ss_dssp CSSCCSSCEEEEEEEETTTCEEEEEETTEECC
T ss_pred ccCCCCceEEEEEEEECCCCeEEEEECCEEcc
Confidence 468999999999999864 678999998654
No 33
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus}
Probab=88.69 E-value=0.59 Score=37.99 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=27.9
Q ss_pred CcccCCCCceEEEEEEe--ceeEEEEecccccch
Q psy6121 48 RLRFDDNQWHHLSIHRR--IQEGTGCGKEEEKKK 79 (126)
Q Consensus 48 ~~~lnDgqWH~V~v~R~--~r~~sL~vd~~~~~~ 79 (126)
..++.+|+||+|.+..+ ...++|-||+..-..
T Consensus 215 ~~~l~~g~W~HvA~t~d~~~~~~~lYvNG~~~~~ 248 (355)
T 4dqa_A 215 TKPLLTNRWYHVALTYDQPTGKTGIYVNGEKWAG 248 (355)
T ss_dssp SSCCCSSCEEEEEEEEETTTTEEEEEETTEEEEE
T ss_pred CCcccCCCEEEEEEEEECCCCEEEEEECCEEEEE
Confidence 35799999999999999 889999999976544
No 34
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A*
Probab=87.95 E-value=2.3 Score=37.60 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=39.6
Q ss_pred CeEEEEEeC-CEEEEEEEcCCceEEEEE-cCCCcccC---CC--CceEEEEEEe--ceeEEEEecccccch
Q psy6121 18 DYLNVAIKD-GGVAINLKLAMGKLDMYI-RPNRLRFD---DN--QWHHLSIHRR--IQEGTGCGKEEEKKK 79 (126)
Q Consensus 18 DFIaLeL~~-G~L~l~~nlGsG~~~~~i-~~s~~~ln---Dg--qWH~V~v~R~--~r~~sL~vd~~~~~~ 79 (126)
.||.|.|.+ |.+.+.+.-.++.+...+ .+. .|. .+ +||+|.+.-+ ...++|-||+..-..
T Consensus 67 ~~~~~~i~~~g~~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~va~~~~~~~~~~~lyvnG~~v~~ 135 (679)
T 2sli_A 67 RHFHIYITNSGGIGIELRNTDGVFNYTLDRPA--SVRALYKGERVFNTVALKADAANKQCRLFANGELLAT 135 (679)
T ss_dssp EEEEEEEETTSCEEEEEEECTTTCEEEEEESS--CCCSEETTEECCEEEEEEEETTTTEEEEEETTEEEEE
T ss_pred cceEEEEcCCCeEEEEEecCCCCeeeeccccc--ccccccCCCceeEEEEEEEECCCCeEEEEECCEEeEe
Confidence 699999985 677777554433221111 222 232 24 7999999998 689999999976543
No 35
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*
Probab=86.72 E-value=4.5 Score=35.70 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=41.2
Q ss_pred CCeEEEEEe-CCEEEEEEEcCCceEE-EEEcCCCcccC---CC--CceEEEEEEe--ceeEEEEecccccch
Q psy6121 17 SDYLNVAIK-DGGVAINLKLAMGKLD-MYIRPNRLRFD---DN--QWHHLSIHRR--IQEGTGCGKEEEKKK 79 (126)
Q Consensus 17 ~DFIaLeL~-~G~L~l~~nlGsG~~~-~~i~~s~~~ln---Dg--qWH~V~v~R~--~r~~sL~vd~~~~~~ 79 (126)
..|+.|.|. +|.+.+.+.-.++... ....|. .+. .+ .||+|.+..+ ...++|-||+..-..
T Consensus 88 ~~~~~~~i~~~g~~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~va~~~d~~~~~~~lyvnG~~v~~ 157 (686)
T 2jkb_A 88 NNYFSIFMRDSGEIGVEIRDAQKGINYLFSRPA--SLWGKHKGQAVENTLVFVSDSKDKTYTMYVNGIEVFS 157 (686)
T ss_dssp TCEEEEEEETTSCEEEEEEETTTTEEEEEEESS--CCCCEETTEECCEEEEEEEETTTTEEEEEETTEEEEE
T ss_pred CcceEEEEcCCCeEEEEEecCCCCeeeeccccc--cccccccCCcceeEEEEEEECCCCeEEEEECCEEEEe
Confidence 368999997 7777777765544321 112222 233 34 8999999998 679999999976543
No 36
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*
Probab=82.30 E-value=4.2 Score=35.98 Aligned_cols=56 Identities=11% Similarity=-0.024 Sum_probs=41.0
Q ss_pred eEEEEEe-CCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEeccccc
Q psy6121 19 YLNVAIK-DGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEK 77 (126)
Q Consensus 19 FIaLeL~-~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~ 77 (126)
++.+.|. +|.+.+.-++++-.+... ....+..+.||++.|.-.+..++..||+..-
T Consensus 565 gy~~~i~~~G~~~l~~~~~~~~vLa~---g~~~~~~~~w~~L~l~~~G~~i~~~ldG~~v 621 (656)
T 3zr5_A 565 GVFFWIFANGSYRVTADLGGWITYAS---GHADVTAKRWYTLTLGIKGYFAFGMLNGTIL 621 (656)
T ss_dssp EEEEEEETTTEEEEEEETTCCSEEEE---EECSCCTTCEEEEEEEEETTEEEEEETTEEE
T ss_pred eEEEEEEcCCEEEEEEecCCeEEEEE---EEecCCCCceEEEEEEEECCEEEEEECCEEE
Confidence 4444444 888888877765332222 2347999999999999999999999999544
No 37
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}
Probab=80.85 E-value=0.37 Score=34.43 Aligned_cols=30 Identities=13% Similarity=-0.064 Sum_probs=26.0
Q ss_pred CcccCCCCceEEEEEEeceeEEEEeccccc
Q psy6121 48 RLRFDDNQWHHLSIHRRIQEGTGCGKEEEK 77 (126)
Q Consensus 48 ~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~ 77 (126)
..++..++||+++|.-.+..+++-||+..-
T Consensus 104 ~~~~~~g~w~~l~I~~~G~~i~~~vnG~~v 133 (172)
T 4azz_A 104 KTPIDVNKKYHLKTEAEGDRFKIYLDDRLV 133 (172)
Confidence 346889999999999999999999998543
No 38
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A*
Probab=65.50 E-value=30 Score=29.69 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=37.8
Q ss_pred EEEEEeCCEEEEEEEcCCceEE-EEEcCCCcccC---CCCceEEEEEEe-ceeEEEEecccccch
Q psy6121 20 LNVAIKDGGVAINLKLAMGKLD-MYIRPNRLRFD---DNQWHHLSIHRR-IQEGTGCGKEEEKKK 79 (126)
Q Consensus 20 IaLeL~~G~L~l~~nlGsG~~~-~~i~~s~~~ln---DgqWH~V~v~R~-~r~~sL~vd~~~~~~ 79 (126)
..+.|.++.+.+.+..-+|.-. .........++ ||+||.|.++-+ ....++=+||.....
T Consensus 128 W~I~l~gn~liw~l~Dsng~~~~i~f~~~~~~Isd~~~nkW~fVtItvDR~g~~~IYING~Lv~s 192 (452)
T 1a8d_A 128 WSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKFNAYLANKWVFITITNDRLSSANLYINGVLMGS 192 (452)
T ss_dssp EEEEEETTEEEEEEECTTSCEEEEEEECCSBTTSCSSSSSCEEEEEEECTTSEEEEEETTEEEEE
T ss_pred eEEEeCCCeEEEEEEcCCCceeeEEeccccccCccccCCeEEEEEEEECCCCCEEEEECCEEeec
Confidence 4455677777777776444322 11111223444 799999999987 566688888876544
No 39
>3gbw_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, protein associated with MYC, PAM, RPM-1, PHR domain, structural genomics, PSI-2; HET: MSE; 1.32A {Mus musculus}
Probab=51.65 E-value=63 Score=23.84 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=22.4
Q ss_pred CcccCCCCceEEEEEEeceeEEEEecccccchh
Q psy6121 48 RLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKR 80 (126)
Q Consensus 48 ~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~ 80 (126)
.+.+..+.||++.+.-++.. |-..+.=.+.+.
T Consensus 96 PV~i~pn~~Yta~a~l~G~~-S~~G~~G~~~V~ 127 (164)
T 3gbw_A 96 PVLLQAGWWYVAWARVSGPS-SDCGSHGQASIT 127 (164)
T ss_dssp EEEECTTCEEEEEEEEESSC-BCCEEEECSEEE
T ss_pred ceEcCCCCeEEEEEEeCCCc-cccCCCCceeeE
Confidence 46799999999999888766 544444444333
No 40
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B
Probab=45.07 E-value=76 Score=30.08 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=34.5
Q ss_pred EEEEeCCEEEEEEEcCCceEE-EEEcCCCcccCCCCceEEEEEEe-ceeE-EEEeccccc
Q psy6121 21 NVAIKDGGVAINLKLAMGKLD-MYIRPNRLRFDDNQWHHLSIHRR-IQEG-TGCGKEEEK 77 (126)
Q Consensus 21 aLeL~~G~L~l~~nlGsG~~~-~~i~~s~~~lnDgqWH~V~v~R~-~r~~-sL~vd~~~~ 77 (126)
.|.+.++.+...+.-.+|... +.. ..+.+++||.|.|+-+ .+.. .+=|||...
T Consensus 933 ~ISf~~n~LIWtl~DsnGn~knI~f----~dy~~NkWyfITISvDRLGnalkIYINGkLv 988 (1196)
T 3v0a_B 933 EIYFQDTGLVFNMIDSNGNEKNIYL----SDVSNNSWHYITISVDRLKEQLLIFIDDNLV 988 (1196)
T ss_dssp EEEEETTEEEEEEECTTCCEEEEEE----CSCCSSSCEEEEEEEETTTTEEEEEETTEEE
T ss_pred EEEECCCeEEEEEEcCCCcccceEe----ccccCCcEEEEEEEEcCCCceeEEEECCEEe
Confidence 556677777777664444322 221 1688999999998887 4444 888888543
No 41
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei}
Probab=40.52 E-value=48 Score=25.98 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=28.5
Q ss_pred eEEEEEeCCEEEEEEEcCCc-----eEEEEEcCCCcccCCCCceEEEEEE
Q psy6121 19 YLNVAIKDGGVAINLKLAMG-----KLDMYIRPNRLRFDDNQWHHLSIHR 63 (126)
Q Consensus 19 FIaLeL~~G~L~l~~nlGsG-----~~~~~i~~s~~~lnDgqWH~V~v~R 63 (126)
-+.+.+.+..|...+..|.- .......+...+|.-|.||+|.|+-
T Consensus 109 ~~~~~v~G~~l~~r~~sgt~~~p~~~~~~~~~~~l~~v~~G~Wh~iVihv 158 (238)
T 2zzj_A 109 STMIWIQNNQLYSRYVNGHYRQPNCGRNIVTRPNLATVSAGAWHRVVLQI 158 (238)
T ss_dssp EEEEEEETTEEEEEEEEECCBTTBCCEEEEEEEEEEECCTTSCEEEEEEE
T ss_pred ceeEEEeCCEEEEEeecccccccCcCccceeccccccccCCceEEEEEEE
Confidence 45577888888877765541 0111111223478999999999876
No 42
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13
Probab=39.92 E-value=72 Score=22.66 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=29.7
Q ss_pred CCeEEEEEeCCEEEEEE-Ec-CC-ceEEEEEcCC--CcccCCCCceEEEEEEe
Q psy6121 17 SDYLNVAIKDGGVAINL-KL-AM-GKLDMYIRPN--RLRFDDNQWHHLSIHRR 64 (126)
Q Consensus 17 ~DFIaLeL~~G~L~l~~-nl-Gs-G~~~~~i~~s--~~~lnDgqWH~V~v~R~ 64 (126)
+=|=.|-+-.|.|.+.+ +- |+ -+-...+.+. ...+..+.||+|.+.-.
T Consensus 38 Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsd 90 (127)
T 3bb6_A 38 GVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTD 90 (127)
T ss_dssp TEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESST
T ss_pred CEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCC
Confidence 34778889999998875 32 33 1112222222 23599999999997433
No 43
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13
Probab=36.42 E-value=1.1e+02 Score=21.43 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=29.4
Q ss_pred CCCeEEEEEeCCEEEEEEEc--CC-ce-EEEEEcCC-CcccCCCCceEEE
Q psy6121 16 GSDYLNVAIKDGGVAINLKL--AM-GK-LDMYIRPN-RLRFDDNQWHHLS 60 (126)
Q Consensus 16 ~~DFIaLeL~~G~L~l~~nl--Gs-G~-~~~~i~~s-~~~lnDgqWH~V~ 60 (126)
.+=|-.|.+..|.|.+.+=. |+ .+ ....+.++ ...+..+.||+|.
T Consensus 36 ~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe 85 (119)
T 3dl3_A 36 VDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIE 85 (119)
T ss_dssp TTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEE
T ss_pred CcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEE
Confidence 44588889999999998633 22 12 22223222 2359999999998
No 44
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=33.44 E-value=66 Score=24.31 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=20.0
Q ss_pred eeecCCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCC
Q psy6121 10 LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPN 47 (126)
Q Consensus 10 LLyaG~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s 47 (126)
-+-.|.-+|.|.+.+..|++..-.-.+.|.+.+.+.|.
T Consensus 164 AL~~G~~Gd~IrVr~~Sgkiv~g~V~~~g~V~V~L~p~ 201 (219)
T 3tee_A 164 AMNNAAVAQNARVRMTSGQIVSGTVDSDGNILINLDPN 201 (219)
T ss_dssp ECSCBCTTSEEEEEETTSCEEEEEECTTSCEEEEC---
T ss_pred EccccCCCCEEEEECCCCCEEEEEEecCCEEEEEcCCC
Confidence 33445556666666666665555555666655544443
No 45
>1oq1_A Protein YESU; structural genomics, singleton, PSI, protein structure initi midwest center for structural genomics, MCSG, unknown funct; 1.70A {Bacillus subtilis} SCOP: b.29.1.17
Probab=29.26 E-value=2e+02 Score=22.30 Aligned_cols=27 Identities=4% Similarity=-0.263 Sum_probs=24.6
Q ss_pred ccCCCCceEEEEEEeceeEEEEecccc
Q psy6121 50 RFDDNQWHHLSIHRRIQEGTGCGKEEE 76 (126)
Q Consensus 50 ~lnDgqWH~V~v~R~~r~~sL~vd~~~ 76 (126)
..+.++|++|.|...++.++..||+.+
T Consensus 154 ~~dan~~Y~i~i~kd~~~v~f~vNg~~ 180 (223)
T 1oq1_A 154 PDDADSPYRMKLIKDKGYVHFSINGLP 180 (223)
T ss_dssp GGGCCSCEEEEEEEETTEEEEEETTEE
T ss_pred ccCCCCcEEEEEEEeCCEEEEEECCEE
Confidence 477789999999999999999999875
No 46
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2, PAM-highwire-RPM-1 domain, toposis regulation, protein structure initiative; 2.20A {Homo sapiens}
Probab=26.95 E-value=1.9e+02 Score=21.41 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=24.8
Q ss_pred CcccCCCCceEEEEEEeceeEEEEecccccchhc
Q psy6121 48 RLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRR 81 (126)
Q Consensus 48 ~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~~ 81 (126)
.+.+..+.|+++.+.-++.. |..+..=...+.-
T Consensus 99 PV~I~pn~~Yta~a~l~G~~-S~~G~~G~~~V~~ 131 (176)
T 3no8_A 99 PVEVLPNVNYTACATLKGPD-SHYGTKGMRKVTH 131 (176)
T ss_dssp EEEECTTCCEEEEEEEESSC-EEEEESCCSEEEE
T ss_pred CeEcCCCCeEEEEEEeCCCc-cccCCCCceeEEe
Confidence 46899999999999998876 6666555555543
No 47
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=24.30 E-value=1.3e+02 Score=21.68 Aligned_cols=66 Identities=9% Similarity=-0.038 Sum_probs=37.1
Q ss_pred eeecCCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccC-CCCceEEEEE-----Eece-eEEEEeccccc
Q psy6121 10 LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFD-DNQWHHLSIH-----RRIQ-EGTGCGKEEEK 77 (126)
Q Consensus 10 LLyaG~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~ln-DgqWH~V~v~-----R~~r-~~sL~vd~~~~ 77 (126)
++|.+...+++.+.=.+|.+-+.-+. .|+-..+.|....+. ||.|+.+.+. -+.. .+++.+|..++
T Consensus 42 ~~~~~~~v~~V~~p~~~Ge~GILp~H--~Plit~L~~G~v~i~~~g~~~~~aV~gGf~eV~~~n~VtIla~~A~~ 114 (160)
T 2xok_H 42 TLYSGSEVTQVNLPAKSGRIGVLANH--VPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFP 114 (160)
T ss_dssp BCCC--CCSEEEEECSSSEEEEESSC--CCCEEEECSSCEEECSSSCCEEECCCCEEEEECTTSCEEEEESCC-C
T ss_pred eEEcCCcEEEEEEECCccCeEecCCC--ccceeEecceEEEEEECCEEEEEEEcCeEEEEeCCCeEEEEeeeeEe
Confidence 66665567888888888876665543 343333334333332 8899987633 2333 56666665443
No 48
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=24.08 E-value=30 Score=22.24 Aligned_cols=13 Identities=8% Similarity=0.360 Sum_probs=11.0
Q ss_pred CCCCceEEEEEEe
Q psy6121 52 DDNQWHHLSIHRR 64 (126)
Q Consensus 52 nDgqWH~V~v~R~ 64 (126)
.||.|++..|..-
T Consensus 40 ~d~~wyRA~I~~~ 52 (94)
T 3fdr_A 40 TNGSWYRARVLGT 52 (94)
T ss_dssp TTTEEEEEEEEEE
T ss_pred CCCeEEEEEEEEE
Confidence 5999999998774
No 49
>3f95_A Beta-glucosidase; beta-sandwich, hydrolase; 1.80A {Pseudoalteromonas SP}
Probab=23.18 E-value=83 Score=23.58 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=22.1
Q ss_pred CEEEEEEEcCCc-e-EEEEEcCCCcccCCCCceEEEEE
Q psy6121 27 GGVAINLKLAMG-K-LDMYIRPNRLRFDDNQWHHLSIH 62 (126)
Q Consensus 27 G~L~l~~nlGsG-~-~~~~i~~s~~~lnDgqWH~V~v~ 62 (126)
+.+.+.+++|.. . ..+-+......+..|+||+|.|.
T Consensus 100 ~~v~L~m~Cg~~~C~~~vdit~~L~~~~~g~W~tv~Ip 137 (193)
T 3f95_A 100 QGANLQVMCSESNCLRDIDFSSFSQLMADKSWHTLAIP 137 (193)
T ss_dssp TCEEEEEEECSSCEEEEEEGGGTHHHHTTCCCEEEEEE
T ss_pred CcEEEEEecCCCCccceeehhHhhhhccCCCCEEEEEe
Confidence 668888888764 2 11222222223678999999865
No 50
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=21.87 E-value=35 Score=22.04 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=25.8
Q ss_pred CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCC-cccCCCCceEEE
Q psy6121 16 GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNR-LRFDDNQWHHLS 60 (126)
Q Consensus 16 ~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~-~~lnDgqWH~V~ 60 (126)
..++....+.+|.+.+.+.-|... ...+.+.. ..+..|.||++.
T Consensus 36 ~~~~e~~~v~~G~~~v~~~d~~~~-~~~l~~G~~~~ip~G~~H~~~ 80 (98)
T 3lag_A 36 GMDYVVVPMADGEMTIVAPDGTRS-LAQLKTGRSYARKAGVQHDVR 80 (98)
T ss_dssp CSCEEEEESSCBC-CEECTTSCEE-CCCBCTTCCEEECTTCEEEEB
T ss_pred CCcEEEEEEeccEEEEEeCCCceE-EEEecCCcEEEEcCCCcEECE
Confidence 357888888899887765433311 11122222 357889999976
No 51
>1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio cholerae} SCOP: b.29.1.8 b.29.1.8 b.68.1.1 PDB: 1w0o_A* 1kit_A 2w68_A*
Probab=21.00 E-value=1.9e+02 Score=25.87 Aligned_cols=63 Identities=6% Similarity=0.066 Sum_probs=37.1
Q ss_pred eecCCCCCeEEEE-EeC-CEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEe---ceeEEEEecccccc
Q psy6121 11 GDGSDGSDYLNVA-IKD-GGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRR---IQEGTGCGKEEEKK 78 (126)
Q Consensus 11 LyaG~~~DFIaLe-L~~-G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~---~r~~sL~vd~~~~~ 78 (126)
||+....-|+++. |.+ |.+.+.+--++|... . .+ -.+|+.||.+.+.-+ ...+++-+|+..=.
T Consensus 111 ~~~~~~~r~~~~~~~~~~g~~~~~~~~~~g~~~-~--~~--g~~~~~~h~~~~~~~~~~~~~~~f~~dG~l~~ 178 (781)
T 1w0p_A 111 YYANGTQRVLPIISLDSSGNLVVEFEGQTGRTV-L--AT--GTAATEYHKFELVFLPGSNPSASFYFDGKLIR 178 (781)
T ss_dssp EEECSSEEECEEEEECTTSCEEEEETTCCSCEE-E--EC--GGGGGSCEEEEEEEECSSSCEEEEEETTEEEE
T ss_pred eecCCCceEEEEEEEcCCCcEEEEEEccCCCee-e--cc--CCCCCceeEEEEEeecCCCceeEEecCCcEEE
Confidence 4443334566664 444 666666633335432 1 22 249999999987733 45788888876544
Done!