RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6121
(126 letters)
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 50.2 bits (120), Expect = 7e-09
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 14 SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ T
Sbjct: 49 GKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 104
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 50.2 bits (119), Expect = 2e-08
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 14 SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
+DY+N+A+K+G V++ + L G + + P +F+DN WH + + R +++ T
Sbjct: 275 GKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 330
Score = 47.9 bits (113), Expect = 1e-07
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
+ S DYL + I G + + + G D+ I + +D ++H + R
Sbjct: 1100 RVDSSSGLGDYLELHIHQGKIGVKFNV--GTDDIAIEESNAIINDGKYHVVRFTRSGGNA 1157
Query: 69 T 69
T
Sbjct: 1158 T 1158
Score = 43.7 bits (102), Expect = 4e-06
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 5 STDCWLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRR 64
D+ + + DG + L L MG + I+ + + +D +W+H+ R
Sbjct: 468 HQKDAKHPQMIKVDFFAIEMLDG--HLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRD 525
Query: 65 IQEGT 69
+ GT
Sbjct: 526 GRSGT 530
Score = 42.9 bits (100), Expect = 7e-06
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 10 LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHR 63
L + DG+D++ V + G + L G + N+ +DNQWH++ I R
Sbjct: 876 LYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNK-PLNDNQWHNVMISR 928
Score = 41.0 bits (95), Expect = 4e-05
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 12 DGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
D D+L + + GG + L ++ + +D WH++ I R+ + T
Sbjct: 41 DDEGFCDFLELILTRGGR-LQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTT 97
Score = 39.4 bits (91), Expect = 1e-04
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
D +D L + + G + L + +GK + +DN+WH + + RR +
Sbjct: 698 MATTSRDSADTLRLELDAG--RVKLTVNLGKGPETLFAGY-NLNDNEWHTVRVVRRGKSL 754
Query: 69 T 69
Sbjct: 755 K 755
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 49.0 bits (116), Expect = 5e-08
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
G S ++ +A++ G + + L+ P + W +S+ +
Sbjct: 79 LFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSGP---VINHGMWQTISVEELARNL 135
Query: 69 T 69
Sbjct: 136 V 136
Score = 35.9 bits (82), Expect = 0.002
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 13 GSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRL-----RFDDNQWHHLSIHRRIQE 67
+ + +++ KL + + + L + D Q H +++ R E
Sbjct: 270 WAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGE 329
Query: 68 GT 69
T
Sbjct: 330 AT 331
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 47.2 bits (112), Expect = 1e-07
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 11 GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
GD + D+ + ++DG I L +L + P R DD +WH + +
Sbjct: 58 GDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP---RLDDGRWHQVEVKMEGDSVL 113
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 47.8 bits (113), Expect = 1e-07
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 13 GSDGSDYLNVAIKDGGVAINLKLAMGKL-DMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
G Y + + G + ++L + + I+P RF D + H + + R T
Sbjct: 428 SGGGQAYYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFT 485
Score = 43.5 bits (102), Expect = 4e-06
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 13 GSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
D D+++V + DG V ++ L G + +D +W ++ R ++
Sbjct: 247 TRDLKDFMSVELSDGHVKVSYDLGSGMTSVVSN---QNHNDGKWKAFTLSRIQKQAN 300
Score = 43.5 bits (102), Expect = 4e-06
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 13 GSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
+ D+L + ++ G V+ + G + L DD+ W+ + R + G+
Sbjct: 53 SAKFIDFLAIEMRKGKVSFLWDV--GSGVGRVEYPDLTIDDSYWYRIEASRTGRNGS 107
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 47.3 bits (112), Expect = 2e-07
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
+ S DYL + I G + + + G D+ I + +D ++H + R
Sbjct: 268 RVDSSSGLGDYLELHIHQGKIGVKFNV--GTDDIAIEESNAIINDGKYHVVRFTRSGGNA 325
Query: 69 T 69
T
Sbjct: 326 T 326
Score = 39.6 bits (92), Expect = 9e-05
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 13 GSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
DG+D++ V + G + L G + N+ +DNQWH++ I R
Sbjct: 47 SGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNK-PLNDNQWHNVMISRDTSNLH 102
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 46.0 bits (109), Expect = 2e-07
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 11 GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
GD + D+ + ++DG I L +L + P R DD +WH + +
Sbjct: 46 GDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP---RLDDGRWHQVEVKMEGDSVL 101
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 46.9 bits (111), Expect = 3e-07
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 12 DGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
+ +D+ V +++G + L G I + +D QWH + I R QEG
Sbjct: 78 ARINHADFATVQLRNGFPYFSYDLGSGDTSTMIPT---KINDGQWHKIKIVRVKQEGI 132
Score = 45.8 bits (108), Expect = 5e-07
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 13 GSDGSDYLNVAIKDGGVAINLKLAMGKLD-MYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
S D + + + D + ++ G+ +Y + QWH ++ +
Sbjct: 253 SSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLE 310
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 46.2 bits (109), Expect = 3e-07
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
+ S DYL + I G I +K +G D+ I + +D ++H + R
Sbjct: 82 RVDSSSGLGDYLELHIHQG--KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNA 139
Query: 69 T 69
T
Sbjct: 140 T 140
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 45.6 bits (108), Expect = 4e-07
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
W+G ++ +DY+ +AI DG + ++ L + +R + + N+W + HR +EG
Sbjct: 54 WIGKAAERADYMALAIVDGHLQLSYDLGSQPV--VLRSTV-KVNTNRWLRIRAHREHREG 110
Query: 69 T 69
+
Sbjct: 111 S 111
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 45.3 bits (107), Expect = 5e-07
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
+ S DYL + I G + + + G D+ I + +D ++H + R
Sbjct: 48 RVDSSSGLGDYLELHIHQGKIGVKFNV--GTDDIAIEESNAIINDGKYHVVRFTRSGGNA 105
Query: 69 T 69
T
Sbjct: 106 T 106
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 45.7 bits (108), Expect = 6e-07
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 13 GSDGSDYLNVAIKDGGVAINLKLAMGKL-DMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
S D + + I DG V ++ G++ Y D +WH L H+
Sbjct: 241 SSAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIV 298
Score = 43.8 bits (103), Expect = 3e-06
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 13 GSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
+ DY + +++G + L G+ + D +WH + ++
Sbjct: 65 HQNQMDYATLQLQEGRLHFMFDLGKGRTKVSHPA---LLSDGKWHTVKTEYIKRKAF 118
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 43.2 bits (101), Expect = 4e-06
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
+ S DYL + I G + +K +G D+ I + +D ++H + R
Sbjct: 54 RVDSSSGLGDYLELHIHQGKIG--VKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNA 111
Query: 69 T 69
T
Sbjct: 112 T 112
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 42.5 bits (100), Expect = 5e-06
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
W G G + SDY+ +AI DG + + +G + +R + N W H+ +R +EG
Sbjct: 67 WSGKGLERSDYIALAIVDG--FVQMMYDLGSKPVVLRSTV-PINTNHWTHIKAYRVQREG 123
Query: 69 T 69
+
Sbjct: 124 S 124
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 41.8 bits (98), Expect = 1e-05
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 3 TLSTDC---WLGDGSDG-SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHH 58
+ G +DG D++++A+ + + L G IR W
Sbjct: 44 ARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAA--IIRSKE-PIALGTWVR 100
Query: 59 LSIHRRIQEGT 69
+ + R ++G
Sbjct: 101 VFLERNGRKGA 111
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 41.0 bits (96), Expect = 2e-05
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 13 GSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
D +D L + + G V + + L G ++ +DN+WH + + RR +
Sbjct: 49 SRDSADTLRLELDAGRVKLTVNLGKGPETLFAGY---NLNDNEWHTVRVVRRGKSLK 102
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 40.7 bits (95), Expect = 3e-05
Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 11 GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
G+ G D++++ ++DG + +L G+ + + +D +WH ++ R + G+
Sbjct: 55 GEAGQGKDFISLGLQDGHLVFRYQLGSGEARLV---SEDPINDGEWHRVTALREGRRGS 110
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 38.2 bits (89), Expect = 3e-04
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 71 CGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
+ ++ E+K+ + + + E+ + + EK +E E +
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964
Score = 33.9 bits (78), Expect = 0.009
Identities = 8/45 (17%), Positives = 14/45 (31%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEER 118
E+ E E + + E + +EE K +E
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992
Score = 33.2 bits (76), Expect = 0.017
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEE----MEEQKEEKKEKVEEEEVKEERRE 120
E K + + K++E+ E E +E + EK+ + + E
Sbjct: 925 GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976
Score = 32.4 bits (74), Expect = 0.026
Identities = 8/46 (17%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 77 KKKRREDKVEEEEDEKLEE--EEMEEQKEEKKEKVEEEEVKEERRE 120
K++ ++ K+E E+ ++ +E + + + K++E+ +E +
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN--KEYKS 946
Score = 32.0 bits (73), Expect = 0.042
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
E + E+ +EE+ + ++E + E++ EE +
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015
Score = 32.0 bits (73), Expect = 0.045
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
EE+ K ++V ++E + + Q + +K+ +EE K +
Sbjct: 974 MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Score = 31.6 bits (72), Expect = 0.056
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+EE K R++ + + ++K EE ++ K E ++ V E + + +
Sbjct: 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036
Score = 31.6 bits (72), Expect = 0.060
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEER 118
E EK + +++ E+E +E+ K+ +E + +
Sbjct: 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005
Score = 30.5 bits (69), Expect = 0.12
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
++E + + E K EE +K + E + E K++ + KEE
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044
Score = 29.7 bits (67), Expect = 0.25
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEE 113
EE K + + + + K + ++ +KEE ++ ++
Sbjct: 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050
Score = 29.7 bits (67), Expect = 0.26
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
EE K R+E + E + +EE + + E ++ E +E +
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037
Score = 29.3 bits (66), Expect = 0.36
Identities = 7/45 (15%), Positives = 25/45 (55%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
K E+++ R + +E + E+++ E+ ++ + + +E ++ +
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 28.9 bits (65), Expect = 0.46
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
E +++ +EE + ++ ++ E + +K+ VEE + E
Sbjct: 1026 SELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLN 1073
Score = 28.2 bits (63), Expect = 0.72
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
K E + R K+ + K+ + + + ++ K+ K E++
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957
Score = 28.2 bits (63), Expect = 0.72
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+ + ++ + M ++E KK K+E V+ ++
Sbjct: 875 RGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKL 922
Score = 28.2 bits (63), Expect = 0.86
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 74 EEEKKKRR-EDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
E+ K+ + +K+ E E E E+ EEE R
Sbjct: 939 EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986
Score = 28.2 bits (63), Expect = 0.90
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Query: 34 KLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRREDKVEEEEDEKL 93
L K M +R ++ + RR E + K+
Sbjct: 852 YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI 911
Query: 94 EEEEMEEQKEEKKEKVEEEEVKEERR 119
E +E K+ E ++ + +R
Sbjct: 912 EARSVERYKKLHIGL--ENKIMQLQR 935
Score = 27.8 bits (62), Expect = 0.95
Identities = 9/49 (18%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 73 KEEEKKKRREDKVEEEEDE-KLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
K + + ++ +++E+ K E+EE+ + ++ +++ E K+ E
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEE 1064
Score = 27.8 bits (62), Expect = 1.1
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 73 KEEEKKKRREDKVEEEEDE--KLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
E +K+ + + EE E + + +EE+ + R+E
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEE---EAKNATNRVLSLQEEIAKLRKE 999
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 34.8 bits (80), Expect = 0.005
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 72 GKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+ + +KK+ + ++ + E E+LEEEE QK + ++ + ++K+ +
Sbjct: 944 QQLQAEKKKMQQQMLDLE-EQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Score = 34.0 bits (78), Expect = 0.008
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 71 CGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
+ KK+ E+ + E E EEEE +Q + +K+K++++ + E +
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Score = 33.3 bits (76), Expect = 0.016
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEEEDE--KLEEE--EMEEQKEEKKEKVEEEEVKEER 118
R++ + EE E ++EEEE+ +L+ E +M++Q + +E++EEEE ++
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 119 RE 120
+
Sbjct: 974 LQ 975
Score = 29.4 bits (66), Expect = 0.32
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
E ++K + +KV + K E+++ +++ + +E ++ EER
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014
Score = 29.4 bits (66), Expect = 0.35
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEE 112
K + +K + K+++ ED+ L E+ + ++++ +EE
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Score = 28.3 bits (63), Expect = 0.74
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
K +++K E++V + EEEE + + K K E + E R
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047
Score = 27.9 bits (62), Expect = 1.0
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
K +++ E+++EEEE + + + + + K +K+E++ + E +
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998
Score = 26.7 bits (59), Expect = 2.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 75 EEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEE 112
+ K + E + E E +EE+ ++ E+ K K+E E
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Score = 26.7 bits (59), Expect = 2.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
+ E+K ++K++ E + E EEM + KK+++EE + E R
Sbjct: 889 QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935
Score = 26.3 bits (58), Expect = 3.0
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+K + E + + + E LE E+ K EK+++ EE++ + E
Sbjct: 1113 NALKKIRELESHISDLQ-EDLESEKAARNKAEKQKRDLSEELEALKTE 1159
Score = 26.3 bits (58), Expect = 3.8
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 74 EEEKKKRREDKVEEEEDEKL---EEEEMEEQKEEKKEKVEEEE 113
EE + EEEE K + + E E + ++++EE
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Score = 26.0 bits (57), Expect = 5.4
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
K K K + + + E + +L++EE Q+ EK ++ E E + +
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Score = 25.6 bits (56), Expect = 7.2
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
++ E +K +K E+++ + EE+E K E ++ ++ ++E R
Sbjct: 1130 EDLESEKAARNKAEKQKRDL--SEELEALKTELEDTLDTTATQQELRG 1175
Score = 25.2 bits (55), Expect = 8.3
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 76 EKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
EK+KR + E +LE+ +++ + ++ ++
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 25.2 bits (55), Expect = 9.4
Identities = 11/46 (23%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
EE ++ + +K + ++ EE++EE+ E ++K++ E+V + +
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEE-EAARQKLQLEKVTADGK 984
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 34.3 bits (79), Expect = 0.006
Identities = 6/48 (12%), Positives = 15/48 (31%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+ + + + LE + E Q E + + + + E
Sbjct: 908 YLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTE 955
Score = 31.6 bits (72), Expect = 0.057
Identities = 5/45 (11%), Positives = 13/45 (28%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
E K + + + + E+ +K+E+
Sbjct: 964 LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
Score = 31.2 bits (71), Expect = 0.080
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVE--EEEVKEERRE 120
+ K + + + E + LE + + + E V E
Sbjct: 918 ITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTER 967
Score = 30.4 bits (69), Expect = 0.12
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEE 111
++ + E ++ L E E ++ E+
Sbjct: 971 FFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
Score = 25.0 bits (55), Expect = 9.1
Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 45 RPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEE 104
+ + ++ + + + +RE V E + E+
Sbjct: 808 HKEYKKTEKPPKGQEVS--ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEK 865
Query: 105 KKEKVEEEEVKEERRE 120
+++ E E +R+
Sbjct: 866 AEQEHAEALRIELKRQ 881
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 34.1 bits (78), Expect = 0.006
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 70 GCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
G ++ + + EE E + +E E+ EEE KEE
Sbjct: 184 LRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEE 231
Score = 27.6 bits (61), Expect = 1.2
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 80 RREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREG 121
R + + + EE +++V EE EE E
Sbjct: 185 RGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEE 226
Score = 26.4 bits (58), Expect = 2.7
Identities = 13/54 (24%), Positives = 17/54 (31%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKE 116
R EE E + EE EE EE+ ++ EE E
Sbjct: 185 RGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAE 238
Score = 25.3 bits (55), Expect = 5.9
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
+ EE ++++ EE E+ E++ K E E + E
Sbjct: 194 PWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAE 238
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.011
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 64 RIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKV------EEEEVKEE 117
R+QE + K ++ E+ + + EE +++ E+ EK ++ ++
Sbjct: 97 RLQE-----LDAASKVMEQEWREKAKKDL---EEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Query: 118 RRE 120
Sbjct: 149 PDA 151
Score = 31.3 bits (70), Expect = 0.056
Identities = 6/36 (16%), Positives = 20/36 (55%)
Query: 85 VEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+ + + E E + + +EE++++++E + + E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVME 109
Score = 29.7 bits (66), Expect = 0.20
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 74 EEEK-KKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
E E +K RE++ + E ++ EQ+ +K K + EE + + E
Sbjct: 83 EPESIRKWREEQ-RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module,
bacterial pathogen, sialic acid, sugar-binding protein;
HET: SIA; 2.2A {Clostridium perfringens}
Length = 191
Score = 32.8 bits (74), Expect = 0.017
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 10 LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
L DG+ ++Y ++ + G V L+ G D + + + + L++ +I++G
Sbjct: 61 LSDGNKANNYFSLYVSGGKVGYELRRQEGNGDFNVHHSADVTFNRGINTLAL--KIEKGI 118
Query: 70 GC 71
G
Sbjct: 119 GA 120
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 32.9 bits (74), Expect = 0.017
Identities = 10/59 (16%), Positives = 23/59 (38%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREG 121
R + G K E + ++ + E+E E +EM + + + + + + G
Sbjct: 300 RSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGALG 358
Score = 30.2 bits (67), Expect = 0.14
Identities = 7/46 (15%), Positives = 25/46 (54%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
E + +R + + E+E + ++++ +KE + +++E + + +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQ 342
Score = 26.7 bits (58), Expect = 2.3
Identities = 8/64 (12%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 62 HRRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEE-EVKEERRE 120
E + + ++ E++ ++ LE+E + +E +++ + +++ + +
Sbjct: 292 QDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGD 351
Query: 121 GGRG 124
G G
Sbjct: 352 GDGG 355
Score = 26.0 bits (56), Expect = 4.8
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 59 LSIHRRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEK 105
L R E K++ ++ + +E + +M+ Q +
Sbjct: 304 LKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGG 350
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 31.8 bits (72), Expect = 0.035
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
R ++ G ++E+ E V+ + L E +E +EE+ + EE+V E
Sbjct: 176 REVKILRGELSKDEEW---EVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEV 227
Score = 26.8 bits (59), Expect = 1.9
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
+ K ++E +E+ E EE+ E KE E+ +
Sbjct: 196 DLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNK 239
Score = 26.4 bits (58), Expect = 3.1
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
K + +E E+E+ E E+ E K+ + E+ +
Sbjct: 197 LFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN 240
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 31.8 bits (73), Expect = 0.038
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 77 KKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKE 116
K + EE+E +EE+ + E E+ EEE+ +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
Score = 31.8 bits (73), Expect = 0.039
Identities = 8/44 (18%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKE 116
+ + + EEE ++ +E+ +E E++E+ ++ + K+
Sbjct: 215 SSKTETVEEPME-EEEAAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
Score = 30.3 bits (69), Expect = 0.11
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 78 KKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+ E E E+E+ +EE E+ +E + EEEE K + ++
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
Score = 29.1 bits (66), Expect = 0.32
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEE 113
+ E+ E+ +EE+++ +E +EE++EEKK K ++ E
Sbjct: 219 ETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVE 259
Score = 27.6 bits (62), Expect = 1.2
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEE 111
+ E+++ +++ E+ +DE EEE EE+K + K+ +
Sbjct: 223 EPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 26.4 bits (59), Expect = 2.8
Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
E ++ E++ +EE E ++E E++EE+K+ + ++V++
Sbjct: 219 ETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKP-KTKKVEKT 261
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 31.1 bits (69), Expect = 0.075
Identities = 8/45 (17%), Positives = 12/45 (26%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
+ E + E + EEK +V E E
Sbjct: 67 GVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAE 111
Score = 30.3 bits (67), Expect = 0.16
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
E + EE+ ++ E + + K +K E + + +
Sbjct: 83 ATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130
Score = 29.2 bits (64), Expect = 0.39
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
E + K EE+ E + E E K + ++ E + + +
Sbjct: 84 TTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGD 131
Score = 26.1 bits (56), Expect = 4.4
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREG 121
+ + EE E + + K E E E +G
Sbjct: 82 AATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 30.9 bits (69), Expect = 0.083
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 63 RRIQEGTGCGKEEEKKKRRED---KVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
R + + G K D + EE ++ EEEE + E +
Sbjct: 184 RMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAAD 241
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 30.9 bits (70), Expect = 0.085
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 76 EKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
K+ +E + EEE + E+++ E++ E+ K+ EE +EE ++
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKK 254
Score = 25.5 bits (56), Expect = 6.0
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 81 REDKVEEEEDEKLEEEEMEEQ--------KEEKKEKVEE 111
++ ++EE ++EK E E+ ++ KE ++VE+
Sbjct: 526 KDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEK 564
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.5 bits (68), Expect = 0.11
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKE 116
KEEE ++ +V+E+E E E E+ +K ++ +K+ ++E K+
Sbjct: 338 KEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKK 381
Score = 27.8 bits (61), Expect = 1.1
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+E + K E ++ E+ D + + E++K E K+K ++EV ++
Sbjct: 353 KEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQR 399
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 30.6 bits (70), Expect = 0.11
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 74 EEEKKKRRE--DKVEEEEDEKLEEEEMEEQKEEKKE---KVEEEEV-----KEERREGGR 123
E +K R E +K+ + +E+L+E+ E E E V +E E +R GR
Sbjct: 264 EHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFRSIVLNEYKRCDGR 323
Query: 124 G 124
Sbjct: 324 D 324
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 30.5 bits (69), Expect = 0.12
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 82 EDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKE 116
+D +E E+D EE EE E + E+
Sbjct: 5 DDLLESEDDYGSEEALSEENVHEASANPQPEDFHG 39
Score = 27.0 bits (60), Expect = 1.9
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 82 EDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
+D + E ED+ EE + E+ + + E
Sbjct: 4 DDDLLESEDDYGSEEALSEENVHEASANPQPEDFHG 39
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli E24377A}
PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 30.2 bits (69), Expect = 0.13
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 73 KEEEKKKRRE--DKVEEEEDEKLEEEEMEEQKEEKKE---KVEEEEV-----KEERREGG 122
+ +K++R D ++ E L E+ + E E +E+ V E R G
Sbjct: 259 RITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDG 318
Query: 123 RG 124
R
Sbjct: 319 RE 320
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 29.7 bits (67), Expect = 0.16
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
++ EK+ + +E E E+ EEE Q EE+ V EE E
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGE 46
Score = 29.3 bits (66), Expect = 0.23
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+ E++ + E E ++ +EEE + +EE EE EE E
Sbjct: 3 QGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAE 50
Score = 27.4 bits (61), Expect = 1.1
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
+ + RE +EEE + EEE EE + E ++
Sbjct: 11 QATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKA 55
Score = 26.6 bits (59), Expect = 1.9
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+E+ ++ + EEE EE E+ E EK E +
Sbjct: 19 REQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKA 66
Score = 25.5 bits (56), Expect = 5.4
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
++ + ++ EEE EEE E+ E E E+
Sbjct: 10 EQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEK 54
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 29.5 bits (67), Expect = 0.19
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 64 RIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEE------------EMEEQKEEKKEKVEE 111
I+ +G ++E +K R+ + E D K EE +Q EE +K+
Sbjct: 112 TIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPA 171
Query: 112 EEVKE 116
++
Sbjct: 172 DDKTA 176
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.6 bits (66), Expect = 0.21
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 75 EEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEE 113
++ + V +E K ++ + + E ++ E
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 28.9 bits (64), Expect = 0.44
Identities = 2/40 (5%), Positives = 15/40 (37%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEE 113
++ + +E ++ ++ ++ + ++ E
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
Score = 26.6 bits (58), Expect = 2.8
Identities = 4/40 (10%), Positives = 11/40 (27%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEE 112
++ K +E E + + + + E
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
Score = 25.8 bits (56), Expect = 5.0
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 86 EEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+ +E ++E K+ + +E + E
Sbjct: 224 RSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 29.5 bits (67), Expect = 0.24
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 64 RIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEE------------EMEEQKEEKKEKVEE 111
I+ +G ++E +K R+ + E D K +E +Q EE +K+
Sbjct: 500 TIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPA 559
Query: 112 EEVKE 116
++
Sbjct: 560 DDKTA 564
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 29.4 bits (66), Expect = 0.29
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 49 LRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKR----------REDKVEEEEDEKLEEEEM 98
+FDD+ + I+ G ++ + RE K+ E + +
Sbjct: 271 CKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIP 330
Query: 99 EEQKEE-KKEKVEEEEVKEERRE 120
++ E ++EK E + ++ER+E
Sbjct: 331 QQLVERLQEEKRIEAQKRKERQE 353
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 29.2 bits (65), Expect = 0.37
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 61 IHRRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVK 115
I +++E + E + + DK++E+ ++LEE E E +E++
Sbjct: 95 IQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFD 149
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 28.9 bits (65), Expect = 0.39
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
+E+K EE ++ EE E E + ++ +E
Sbjct: 3 SKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVAN 46
Score = 27.3 bits (61), Expect = 1.1
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEER 118
EE + E+ E + E+ + ++K E E ER
Sbjct: 14 PEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRER 59
Score = 24.6 bits (54), Expect = 9.9
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEE 112
EE + E E+ + + +E Q E + + +
Sbjct: 22 HEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDG 61
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 28.6 bits (65), Expect = 0.58
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Query: 76 EKKKRRE--DKVEEEEDEKLEEEEMEEQKEEKKE---KVEEEEV-----KEERREGGRG 124
+K++R D ++ E L E+ + E E +E+ V E R GR
Sbjct: 268 DKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGRE 326
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 28.6 bits (63), Expect = 0.60
Identities = 7/46 (15%), Positives = 18/46 (39%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
E+ +K+ E + E + E + + ++E E + +
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAK 745
Score = 28.2 bits (62), Expect = 0.89
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
E ++ + E ++LE+E + +K E E +
Sbjct: 661 AIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELL 707
Score = 25.5 bits (55), Expect = 7.2
Identities = 9/57 (15%), Positives = 22/57 (38%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
RI+ + + K + + E E + + EME + ++E + ++
Sbjct: 733 ARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLAN 789
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 28.2 bits (64), Expect = 0.71
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 13/65 (20%)
Query: 73 KEEEKKKRRE--DKVEEEEDEKLEEEEMEEQKEEKKE------KVEEEEV-----KEERR 119
K ++K+ R E +++ L + + + ++E + V R
Sbjct: 272 KIQKKQDRYEAVGAAKKKAIAALGLSDENPTGYDPLKLGAIFKELEADVVRRGILDTGLR 331
Query: 120 EGGRG 124
GR
Sbjct: 332 IDGRD 336
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 27.9 bits (63), Expect = 0.90
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 76 EKKKRRE--DKVEEEEDEKLEEEEMEEQKEEKK--EKVEEEEV-----KEERREGGRG 124
K+ R D+V+ EKL E +KE + + V E++R GRG
Sbjct: 304 GKQDREAELDRVKALAAEKLLPEFEGREKEISAAYRALTKSLVRERVIAEKKRIDGRG 361
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 27.9 bits (63), Expect = 1.0
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 64 RIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEE 96
I+ +G +EE ++ +E + E D K +E
Sbjct: 469 TIKSSSGLSEEEIQRMIKEAEENAEADRKRKEA 501
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase;
1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A
2z0d_A 2z0e_A
Length = 396
Score = 27.6 bits (60), Expect = 1.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 51 FDDNQWHHLSIHRRIQEGTGCGKE 74
F D + + SIH+ Q G G GK
Sbjct: 118 FIDRKDSYYSIHQIAQMGVGEGKS 141
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 27.8 bits (62), Expect = 1.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 83 DKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
+ +E ++ E EE + + KEK E+E ++++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia
coli} PDB: 3crc_A*
Length = 265
Score = 27.5 bits (62), Expect = 1.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 83 DKVEEEEDEKLEEEEMEEQKEEKKEKVEEE 112
DKV EE DE + E Q + K+EEE
Sbjct: 169 DKVYEEIDEVMYE---ARQAVVDQAKLEEE 195
Score = 26.7 bits (60), Expect = 2.0
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 91 EKLEEEEMEEQKEEKKEKVEEEEVKEE 117
+K+ EE E E ++ V++ +++EE
Sbjct: 169 DKVYEEIDEVMYEARQAVVDQAKLEEE 195
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 27.6 bits (60), Expect = 1.2
Identities = 5/48 (10%), Positives = 27/48 (56%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
E ++ + +++ + E+E++ ++ +K+ ++ + E+++ + +
Sbjct: 535 MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582
Score = 26.8 bits (58), Expect = 2.4
Identities = 14/66 (21%), Positives = 29/66 (43%)
Query: 55 QWHHLSIHRRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEV 114
+ +I + Q T KE E ++ + + + E + EQ E+KE+ +E +
Sbjct: 469 ESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHL 528
Query: 115 KEERRE 120
K+ +
Sbjct: 529 KQLTEK 534
Score = 26.1 bits (56), Expect = 4.7
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEE-EEMEEQKEEKKEKVEEEEVKEERRE 120
+E K+ +K+E + + L+E E K +++E++ +E ++E R
Sbjct: 523 SYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 571
Score = 24.9 bits (53), Expect = 9.0
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEER 118
+ K E + + E+ + +E +E ++ EK+E + V+ +
Sbjct: 499 AQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLK 544
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 27.4 bits (61), Expect = 1.3
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 82 EDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
E + E + + E EE E V E + E
Sbjct: 180 ELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLE 215
Score = 27.0 bits (60), Expect = 1.6
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREGG 122
EE + + + +V EE E E +EE + + G
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAG 227
Score = 26.2 bits (58), Expect = 2.8
Identities = 8/52 (15%), Positives = 14/52 (26%)
Query: 67 EGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEER 118
+ E E E + +EE K E E + ++
Sbjct: 183 AEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Score = 25.8 bits (57), Expect = 3.5
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREG 121
+ + E E+ E + EE K + E+ + +
Sbjct: 186 QAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDN 233
Score = 25.8 bits (57), Expect = 3.6
Identities = 7/55 (12%), Positives = 17/55 (30%)
Query: 67 EGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREG 121
E + + EE + LE + E+ + + + E+ +
Sbjct: 182 EAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
Score = 25.5 bits (56), Expect = 5.0
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 81 REDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
R E E + + + E E+ E ++ +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASL 214
Score = 25.1 bits (55), Expect = 7.9
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREG 121
E+ + + E E + + EEVK E E
Sbjct: 177 TAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASED 224
Score = 25.1 bits (55), Expect = 8.6
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 80 RREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREGGRGG 125
R + E E + + + E +E E + E +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAE 220
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 27.6 bits (60), Expect = 1.4
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 78 KKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
K+R ++ E+ + E+ E+++EEK+ K ++++
Sbjct: 3 KRRPKEAEPEQVAPETPEDRDEDEREEKRRKTTRKKLESH 42
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A
{Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A
1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A*
1yxw_A* 1yyn_A* 1diw_A*
Length = 452
Score = 27.7 bits (60), Expect = 1.4
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 7 DCWLGDGSDGSDYLNVAIKDGGVAINLKLAMGK----LDMYIRPNRLRFDDNQWHHLSI 61
+V++K + LK + G+ + + N+W ++I
Sbjct: 115 SSMKKHSLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKFNAYLANKWVFITI 173
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 26.9 bits (60), Expect = 1.7
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 75 EEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEER 118
E K ++++E E+L ++ EE+ + ++EK E+E+ ++++
Sbjct: 218 RENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK 261
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 27.1 bits (60), Expect = 1.7
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 83 DKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
+ +E ++ E EE + + KEK E+E ++++++
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQK 413
Score = 27.1 bits (60), Expect = 1.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
+ EEK +R + E+ E E+LE+++ EQ + + +E V +
Sbjct: 388 ETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDS 432
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 27.2 bits (61), Expect = 1.8
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 75 EEKKKRREDKVEEEEDEKL-----EEEEMEEQKEEKKEKVEEEEVKEE 117
+E +K ++ V+ +E EK E+ + EQ E+ K+ +E++ +E
Sbjct: 404 DEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQEN 451
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.1 bits (59), Expect = 1.8
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 75 EEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
EE+++ K+++ E E + EM+ +++ +K K E E++ +
Sbjct: 321 EEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQ 366
Score = 26.7 bits (58), Expect = 2.6
Identities = 12/59 (20%), Positives = 25/59 (42%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREG 121
++ E K ++ K + E K E ++ EEK+ + E+E+ E ++
Sbjct: 339 EQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQR 397
Score = 25.9 bits (56), Expect = 4.1
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 35 LAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRREDKVEEEEDE--K 92
A+ + N+ + + + RR E E ++ E KV+E+ +
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKD 355
Query: 93 LEEEEMEEQKEEKKE-KVEEEEVKEERRE 120
E E ++ KK + + +E++E+RR+
Sbjct: 356 SEAELQRRHEQMKKNLEAQHKELEEKRRQ 384
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport,
thiol Pro transport, UBL conjugation pathway, structural
genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Length = 355
Score = 27.2 bits (59), Expect = 1.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 51 FDDNQWHHLSIHRRIQEGTGCGKE 74
F D + SIH+ Q G G GK
Sbjct: 114 FLDRKDCCYSIHQMAQMGVGEGKS 137
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer,
pentraxin fold, cyclic heptamer, invertebrate lectin,
sugar binding protein; 2.30A {Limulus polyphemus} PDB:
3flr_A 3flt_A
Length = 217
Score = 26.6 bits (58), Expect = 2.1
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 5 STDCWLGDGSDGSD--YLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSI 61
+T + D ++ +NL L + + + QW+H+
Sbjct: 46 NTGYIFSCATSNQDNQFITSMYVKSDGTLNLGLQVNASSNKYISCPIEIELGQWYHVCH 104
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 26.4 bits (59), Expect = 2.9
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 8/31 (25%)
Query: 27 GGVAINLKLAMGKLDMYIRPNRLRFDDNQ-W 56
GG ++N +Y PN F + W
Sbjct: 95 GGTSVN---GA----LYWYPNDGDFSSSVGW 118
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 26.4 bits (59), Expect = 3.2
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 75 EEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEE--EEVKEERREGG 122
++ D V EE EK ++ M++ K KV+E E + +GG
Sbjct: 400 RVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHK-KVQEMKEMSRNAVVDGG 448
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 26.1 bits (58), Expect = 3.4
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 85 VEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+EE E E+++E +E + E + EE +
Sbjct: 1 MEERNHENTLEKDLEAVGQEAQALEERLKAAEEELK 36
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 26.1 bits (57), Expect = 3.4
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEE 113
+E + + + + + ++L E EE++ E +++ E +E
Sbjct: 482 RESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 522
Score = 25.7 bits (56), Expect = 4.7
Identities = 9/45 (20%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 76 EKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
++ + + ++ D + ++ +E +EEK+ E + ++ER+E
Sbjct: 481 IRESKLSEVLQAVTDHDIPQQLVERLQEEKR---IEAQKRKERQE 522
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 25.7 bits (57), Expect = 3.5
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 64 RIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEE 96
IQ G K++ + +E + ED K +E
Sbjct: 111 VIQSSGGLSKDQIENMIKEAEKNAAEDAKRKEL 143
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 26.2 bits (57), Expect = 3.9
Identities = 9/53 (16%), Positives = 26/53 (49%)
Query: 67 EGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
+G +++ V+ +E++ ++ E++ +K K++E+E +R
Sbjct: 572 DGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLSAKR 624
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 25.7 bits (57), Expect = 3.9
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 64 RIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEE 96
IQ G K++ + + + EED + +E
Sbjct: 131 VIQSSGGLSKDDIENMVKNAEKYAEEDRRKKER 163
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate
ligase; peptidoglycan biosynthesis; HET: KCX UAG API;
2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 498
Score = 26.0 bits (58), Expect = 4.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 8 CWLGDGSDGSDYLNVAIKDGGVAI 31
+G +DG Y+ AI G AI
Sbjct: 39 AVVGHQADGRRYIPQAIAQGVAAI 62
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 25.8 bits (56), Expect = 4.2
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEK 108
R + G E + D + E++E+EE + EK
Sbjct: 213 REVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEE-----QAAAEK 253
Score = 24.6 bits (53), Expect = 10.0
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 75 EEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEE 113
+ + E + + EE EK+E+ E+
Sbjct: 217 RMRGTISREHPWEVMPDLYFYRDPEE--IEKEEQAAAEK 253
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
1.70A {Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 25.8 bits (57), Expect = 4.3
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 24 IKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHH----LSIHRRIQE 67
+ +GGV + +LAM D +I + + D +RR E
Sbjct: 411 VDEGGVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTE 458
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 25.9 bits (58), Expect = 4.5
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 87 EEEDEKLEEEEMEEQKEEKK--EKVEEEEVKEERR 119
++E + E + + E+ EE + V+E +KE R
Sbjct: 2 DKEGKTGEVQTLTEKIEEAGMPDHVKETALKELNR 36
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A
{Saccharomyces cerevisiae} SCOP: a.252.1.1
Length = 151
Score = 25.1 bits (54), Expect = 5.6
Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 82 EDKVEEEEDEKLE--EEEMEEQKEEKKEKVEEEEVKEERREG 121
D EE+ K++ ++++ E ++EK E ++++E +
Sbjct: 83 VDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124
>1i1q_A Anthranilate synthase component I; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: d.161.1.1
PDB: 1i7q_A 1i7s_A*
Length = 520
Score = 25.4 bits (56), Expect = 5.9
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 79 KRREDKVEEEEDEKLEEEEMEEQKE 103
+R + ++ + D ++E + + KE
Sbjct: 334 RRADGTLDRDLDSRIELDMRTDHKE 358
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 25.3 bits (56), Expect = 6.8
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 78 KKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+ E+ E+ + E KE++ + ER+E
Sbjct: 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN--MERKE 49
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 25.4 bits (56), Expect = 6.8
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREG 121
+E++ + E D EEE EE V E+ ++ + R G
Sbjct: 39 DDEDEDIDALIEDLESHDGHDAEEEEEEATPGGGRVVPEDMLQTDTRVG 87
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein,
progenitor toxin complex, VHH bound interlocked complex;
HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B
Length = 1196
Score = 25.2 bits (54), Expect = 7.7
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 21 NVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSI 61
+ +D G+ N+ + G + +N WH+++I
Sbjct: 933 EIYFQDTGLVFNMIDSNGNEKNIYLSD---VSNNSWHYITI 970
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N*
1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M*
3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Length = 166
Score = 24.8 bits (54), Expect = 7.8
Identities = 4/46 (8%), Positives = 12/46 (26%)
Query: 72 GKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
GK K R +++ + ++ + +
Sbjct: 112 GKAARIKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAP 157
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A
{Homo sapiens} SCOP: b.122.1.12
Length = 239
Score = 25.2 bits (54), Expect = 8.1
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREGG 122
RR + G +E K + ++ + + E E ++E++ K EEEE +E
Sbjct: 177 RRDDDEPGPWTKEGKDRIKKLGLTMQYPEGYLEALANREREKENSKREEEEQQEGGFASP 236
Query: 123 RGG 125
R G
Sbjct: 237 RTG 239
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 25.2 bits (56), Expect = 8.6
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 40 LDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEME 99
+D YI P L + W + R++ + +E ++ EE + +
Sbjct: 680 IDAYIPPQSL---EEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERILAQSI 736
Query: 100 EQKEEKKEKVEEEEVKE-ERR 119
E + K+E V E ++ E+
Sbjct: 737 EVYQRKEEVVGAEMMRHFEKG 757
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 24.9 bits (55), Expect = 8.7
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 79 KRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEE 111
K ++ +E +E E E+E+ ++E + +E
Sbjct: 43 KETQEFIELLREEGENELEIEKYEKELDQLYQE 75
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 25.0 bits (55), Expect = 8.9
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEE 111
+ +K + + + + E+ L +E + K + K EE
Sbjct: 576 SDAEKTKLQGMLNKAEE-WLYDEGFDSIKAKYIAKYEE 612
>3ffz_A Botulinum neurotoxin type E; botulinum neurotoxin serotype E,
botulism, domain organization, endopeptidase,
translocation, hydrolase; 2.65A {Clostridium botulinum}
Length = 1252
Score = 25.2 bits (54), Expect = 9.2
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 13 GSDGSDYLNVAIKDGGVAINLKLAMGKLD----MYIRPNRLRFDDNQWHHLSI 61
D + V++ + L+ G Y N + N+W ++I
Sbjct: 943 MRDNNSGWKVSLNHNEIIWTLQDNAGINQKLAFNYGNANGISDYINKWIFVTI 995
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 24.9 bits (55), Expect = 9.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEE 111
K+ E ++ E+K E E++ K E + KE ++VE+
Sbjct: 254 KDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEK 292
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 25.0 bits (54), Expect = 9.2
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 77 KKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
+ + +K + E ++ KK K EEEE ++
Sbjct: 278 DRCHSAELALNVITKKRKGYE-DDDYVSKKSKHEEEEWTDD 317
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 25.0 bits (55), Expect = 9.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 85 VEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREG 121
V++ EK+E E E KE + EER +G
Sbjct: 70 VDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG 106
>2vxr_A Botulinum neurotoxin type G; hydrolase, ganglioside, protease,
recepto secreted, binding domain, metalloprotease; 1.90A
{Clostridium botulinum} PDB: 3mpp_G
Length = 482
Score = 24.9 bits (53), Expect = 9.5
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 22 VAIKDGGVAINLKLAMGKLDM----YIRPNRLRFDDNQWHHLSI 61
V+IK + L K Y + + N+W ++I
Sbjct: 154 VSIKGNRIIWTLIDVNAKSKSIFFEYSIKDNISDYINKWFSITI 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.133 0.375
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,059,298
Number of extensions: 124067
Number of successful extensions: 1934
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1536
Number of HSP's successfully gapped: 640
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (24.2 bits)