RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6121
(126 letters)
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 185
Score = 41.7 bits (97), Expect = 4e-06
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 10 LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLD-MYIRPNRLRFDDNQWHHLSIHRRIQEG 68
LG S D + + + D + ++ G+ +Y + QWH ++ +
Sbjct: 42 LGVSSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRL 101
Query: 69 T 69
Sbjct: 102 E 102
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 38.3 bits (88), Expect = 7e-05
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 3 TLSTDCWL--GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLS 60
T + L G S ++ +A++ G + + L+ P + W +S
Sbjct: 67 TFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSGP---VINHGMWQTIS 123
Query: 61 IHRRIQEGT 69
+ +
Sbjct: 124 VEELARNLV 132
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 37.4 bits (86), Expect = 1e-04
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 3 TLSTDCWL--GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLS 60
T + + GD + D+ + ++DG I L +L + P R DD +WH +
Sbjct: 36 TWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP---RLDDGRWHQVE 92
Query: 61 IHRRIQEGT 69
+
Sbjct: 93 VKMEGDSVL 101
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 218
Score = 37.2 bits (85), Expect = 2e-04
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDM---YIRPNRLRFDDNQWHHLSIHRRI 65
L + L+VA+ D LK + L + + ++ D Q H +++ R
Sbjct: 64 ALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRD 123
Query: 66 QEGTGCGKEEEKKKRRE 82
E T +
Sbjct: 124 GEATLEVDGTRGQSEVS 140
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 189
Score = 34.4 bits (78), Expect = 0.002
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
++ + +D+ V +++G + L G I + +D QWH + I R QEG
Sbjct: 57 YMARI-NHADFATVQLRNGFPYFSYDLGSGDTSTMIPT---KINDGQWHKIKIVRVKQEG 112
Query: 69 T 69
Sbjct: 113 I 113
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 195
Score = 32.6 bits (73), Expect = 0.008
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIH 62
W G G + SDY+ +AI DG V + +G + +R + N W H+ +
Sbjct: 61 WSGKGLERSDYIALAIVDGFV--QMMYDLGSKPVVLRSTV-PINTNHWTHIKAY 111
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani
[TaxId: 1513]}
Length = 247
Score = 29.4 bits (65), Expect = 0.11
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 5 STDCWLGDGSDGSDYLNVAIKDGGVAINLKLAM----GKLDMYIRPNRLRFDDNQWHHLS 60
+V++K + LK + + + N+W ++
Sbjct: 113 IISSMKKHSLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKFNAYLANKWVFIT 172
Query: 61 I 61
I
Sbjct: 173 I 173
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 28.5 bits (62), Expect = 0.19
Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 49 LRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRRED------KVEEEEDEKLEEEEMEEQK 102
+FDD+ + I+ G ++ + + E + E L+ +
Sbjct: 271 CKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIP 330
Query: 103 EEKKEKVEEEEVKEERR 119
++ E+++EE+ E ++
Sbjct: 331 QQLVERLQEEKRIEAQK 347
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 28.0 bits (61), Expect = 0.34
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 86 EEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+ E+ E+ + E KE++ + + ER+E
Sbjct: 3 QRTEELLRCNEQQAAELETCKEQLFQSNM--ERKE 35
Score = 25.6 bits (55), Expect = 2.0
Identities = 6/43 (13%), Positives = 20/43 (46%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVK 115
++ ++ R ++ + E E +E+ + E K+ +++
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 44
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 218
Score = 27.6 bits (60), Expect = 0.37
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 9 WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFD----DNQWHHLSIHR 63
+ + + ++I+ + L GK +R D N+W ++I
Sbjct: 89 TIINCMKNNSGWKISIRGNRIIWTLIDINGKTKSVFFEYNIREDISEYINRWFFVTITN 147
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 27.6 bits (60), Expect = 0.44
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 86 EEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
++ ++ + KE+ K ++EE++E + E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 25.3 bits (54), Expect = 2.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEE 104
KE + K+ +E+ K ++EE+EE ++E
Sbjct: 333 KEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 27.4 bits (59), Expect = 0.52
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEE--EEVKEERRE 120
R +++ G E + + D+ L +E+ ++ +E + E
Sbjct: 374 RMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK----GKKLRENLRALRETADRAVGP 429
Query: 121 GG 122
G
Sbjct: 430 KG 431
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 26.5 bits (58), Expect = 1.0
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 68 GTGCGKEEEKKKRREDKVE--EEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
G G+ ++ K+ D V ++ EKL + E+ + +E K ++ +++ E +
Sbjct: 23 RLGEGRMVKRLKKVADYVGTLSDDVEKLTDAELRAKTDEFKRRLADQKNPETLDD 77
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase,
N-terminal domain {North american leech (Macrobdella
decora) [TaxId: 6405]}
Length = 196
Score = 26.4 bits (57), Expect = 1.0
Identities = 0/11 (0%), Positives = 6/11 (54%)
Query: 51 FDDNQWHHLSI 61
+ ++ +++
Sbjct: 105 KGERVFNTVAL 115
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS)
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 25.8 bits (56), Expect = 1.3
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 91 EKLEEEEMEEQKEEKKEKV 109
+++ ++E E KE+V
Sbjct: 144 NRIDMRQVEALVEASKEEV 162
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 25.8 bits (56), Expect = 1.6
Identities = 6/54 (11%), Positives = 14/54 (25%)
Query: 10 LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHR 63
L +V ++L L + + QW +++
Sbjct: 80 LERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFV 133
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris
suum) [TaxId: 6253]}
Length = 147
Score = 25.3 bits (55), Expect = 1.7
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 92 KLEEEEMEEQKEEKKEKVEEEEVKEE 117
LE ++++ KE + VK +
Sbjct: 28 MLEGDDIQVGKEFAARVEDCTNVKHD 53
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 25.2 bits (55), Expect = 1.8
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 56 WHHLSIHRRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKE 103
+ ++ ++ + T G + K +R E + + +E E L EEE++E++
Sbjct: 49 YFRKTVGYKVPKNTELGSDATKVQREEQR-KIDEAEPLTEEEIQEKEN 95
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.4 bits (55), Expect = 2.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 63 RRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVE 110
RI G K E+ K +E E E L +EE + Q + ++E+V+
Sbjct: 67 SRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
>d1qwza_ b.100.1.1 (A:) Sortase B {Staphylococcus aureus [TaxId:
1280]}
Length = 235
Score = 24.9 bits (54), Expect = 2.6
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 82 EDKVEEEEDEKLEEE-EMEEQKEEKKEKVEEEEVKEE 117
EDK E EKL+++ +M K + + + E +++
Sbjct: 22 EDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKI 58
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 25.2 bits (54), Expect = 2.8
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 64 RIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEM--EEQKEEKKEKVEEEEVKEERR 119
RI T ++ K+++E + E E KL +++ + K + E + E R
Sbjct: 702 RIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 759
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 24.3 bits (52), Expect = 5.1
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 75 EEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEK 108
E K ++++E E+L ++ EE+ + ++EK
Sbjct: 217 RENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
Score = 23.9 bits (51), Expect = 6.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 85 VEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
+ E + + +++ E+ +K EEEE K ER +
Sbjct: 215 LTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 24.2 bits (52), Expect = 5.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 83 DKVEEEEDEKLEEEEMEEQKEEKKEKVEEE 112
+ +E ++ E EE + + KEK E+E
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 24.2 bits (52), Expect = 5.3
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 84 KVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVK 115
KV++ +++ EE++ E E++ E K
Sbjct: 212 KVDDRTFKEVSPEELKPYVERANERIRELLKK 243
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase
{Azotobacter vinelandii [TaxId: 354]}
Length = 243
Score = 24.0 bits (51), Expect = 5.6
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 2 LTLSTDCWLGDGSDGSDYLNVAIKD 26
L+LS DC + +G+ + + + D
Sbjct: 210 LSLSYDCRVINGAAAARFTK-RLGD 233
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 23.7 bits (51), Expect = 5.9
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
K K+R+ E+ + EEE+ Q++E K +++ + ++E
Sbjct: 87 KTVALKRRKASS--RLENLGIPEEELLRQQQELFAKARQQQAELAQQE 132
>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 334
Score = 24.2 bits (52), Expect = 6.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 51 FDDNQWHHLSIHRRIQEGTGCGKE 74
F D + SIH+ Q G G GK
Sbjct: 93 FLDRKDCCYSIHQMAQMGVGEGKS 116
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 24.3 bits (51), Expect = 6.4
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 73 KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKE 116
++E KRR + + EE+E +++ ++E+ +
Sbjct: 37 RDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ 80
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 23.9 bits (52), Expect = 7.1
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 87 EEEDEKLEEEEMEEQKEEKKEKVEEEE 113
+ + E+ ++ +E+K+ + E+ + EE
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEE 128
Score = 23.5 bits (51), Expect = 7.9
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 73 KEEEKKKRREDKVEE-EEDEKLEEEEMEEQKEEKKEKV 109
KE++K+ ++K + E EK EE+ + + ++E+V
Sbjct: 105 KEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQV 142
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 23.2 bits (50), Expect = 9.0
Identities = 9/34 (26%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 82 EDKVEEEEDEKLE--EEEMEEQKEEKKEKVEEEE 113
D EE+ K++ ++++ E ++EK E ++++E
Sbjct: 82 VDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 115
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 23.5 bits (51), Expect = 9.3
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 74 EEEKKKRREDKVEEEEDEKLEEEEMEEQ 101
+ + + R++ EE+ K E E++ ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.133 0.375
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 512,798
Number of extensions: 25295
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 140
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (22.5 bits)