BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6122
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
ATF+G E+ YD ++ PI SS D I+L F+T GL+LH K+
Sbjct: 234 ATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 277
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
ATF+G E+ YD ++ PI SS D I+L F+T GL+LH K+
Sbjct: 234 ATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 277
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain,
Lns 2-6
Length = 1019
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
ATF+G E+ YD ++ PI SS D I+L F+T GL+LH K+
Sbjct: 9 ATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 52
>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM
NEUREXIN 1 ALPHA
pdb|2H0B|B Chain B, Crystal Structure Of The Second LnsLG DOMAIN FROM
NEUREXIN 1 ALPHA
pdb|2H0B|C Chain C, Crystal Structure Of The Second LnsLG DOMAIN FROM
NEUREXIN 1 ALPHA
pdb|2H0B|D Chain D, Crystal Structure Of The Second LnsLG DOMAIN FROM
NEUREXIN 1 ALPHA
Length = 184
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
ATF+G E+ YD ++ PI SS D I+L F+T GL LH K+
Sbjct: 8 ATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLXLHTGKS 51
>pdb|3OM7|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
Length = 456
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 56 DTISLYFRTKHSTGLILHADKAPSEATFRGLEFLV 90
+T++ ++ + TGL+LH D P++ TF F V
Sbjct: 364 NTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAV 398
>pdb|3OM5|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
Length = 456
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 56 DTISLYFRTKHSTGLILHADKAPSEATFRGLEFLV 90
+T++ ++ + TGL+LH D P++ TF F V
Sbjct: 364 NTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAV 398
>pdb|3OM4|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
Length = 456
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 56 DTISLYFRTKHSTGLILHADKAPSEATFRGLEFLV 90
+T++ ++ + TGL+LH D P++ TF F V
Sbjct: 364 NTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAV 398
>pdb|3OM6|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
Length = 456
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 56 DTISLYFRTKHSTGLILHADKAPSEATFRGLEFLV 90
+T++ ++ + TGL+LH D P++ TF F V
Sbjct: 364 NTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAV 398
>pdb|3OM2|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
D257a
Length = 456
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 56 DTISLYFRTKHSTGLILHADKAPSEATFRGLEFLV 90
+T++ ++ + TGL+LH D P++ TF F V
Sbjct: 364 NTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAV 398
>pdb|1U7N|A Chain A, Crystal Structure Of The Fatty AcidPHOSPHOLIPID SYNTHESIS
Protein Plsx From Enterococcus Faecalis V583
pdb|1U7N|B Chain B, Crystal Structure Of The Fatty AcidPHOSPHOLIPID SYNTHESIS
Protein Plsx From Enterococcus Faecalis V583
Length = 336
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 14 PLILTTNNGDEDKAPSEATFRGLEFLVYDQT 44
P + NNG E+ SE T + E L D+T
Sbjct: 175 PRVGLLNNGTEETKGSELTKKAFELLAADET 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,870,828
Number of Sequences: 62578
Number of extensions: 98879
Number of successful extensions: 201
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 15
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)