BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6122
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|D0PRN3|NRX3A_CHICK Neurexin-3 OS=Gallus gallus PE=1 SV=1
Length = 1693
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1 MATHQVYVIPRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISL 60
+ + V IP + L+++ + + + ATFRG E+L YD ++ PI SS D I+L
Sbjct: 233 LCSEDVNHIPGLSHLMMSEQGRSKARDENMATFRGSEYLCYDLSQ---NPIQSSSDEITL 289
Query: 61 YFRTKHSTGLILHADKA 77
F+T GLILH K+
Sbjct: 290 SFKTWQRNGLILHTGKS 306
>sp|Q6P9K9|NRX3A_MOUSE Neurexin-3 OS=Mus musculus GN=Nrxn3 PE=1 SV=2
Length = 1571
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
ATFRG E+L YD ++ PI SS D I+L F+T GLILH K+
Sbjct: 259 ATFRGSEYLCYDLSQ---NPIQSSSDEITLSFKTWQRNGLILHTGKS 302
>sp|Q9Y4C0|NRX3A_HUMAN Neurexin-3 OS=Homo sapiens GN=NRXN3 PE=1 SV=4
Length = 1643
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
ATFRG E+L YD ++ PI SS D I+L F+T GLILH K+
Sbjct: 259 ATFRGSEYLCYDLSQ---NPIQSSSDEITLSFKTWQRNGLILHTGKS 302
>sp|A1XQX8|NR3AA_DANRE Neurexin-3a OS=Danio rerio GN=nrxn3a PE=2 SV=1
Length = 1697
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
ATFRG EF YD ++ PI SS D I+L F+T GLILH K+
Sbjct: 259 ATFRGSEFFCYDLSQ---NPIQSSSDEITLSFKTWQRNGLILHTGKS 302
>sp|Q28146|NRX1A_BOVIN Neurexin-1 OS=Bos taurus GN=NRXN1 PE=1 SV=1
Length = 1530
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 22 GDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
GD+ K ATF+G E+ YD ++ PI SS D I+L F+T GL+LH K+
Sbjct: 291 GDQGKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 343
>sp|Q63372|NRX1A_RAT Neurexin-1 OS=Rattus norvegicus GN=Nrxn1 PE=1 SV=3
Length = 1530
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 22 GDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
GD+ K ATF+G E+ YD ++ PI SS D I+L F+T GL+LH K+
Sbjct: 291 GDQGKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 343
>sp|Q07310|NRX3A_RAT Neurexin-3 OS=Rattus norvegicus GN=Nrxn3 PE=1 SV=1
Length = 1578
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 10 PRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTG 69
P + L+++ + + + ATFRG E+L YD ++ PI SS I+L F+T G
Sbjct: 242 PGLSHLMMSEQGRSKAREENVATFRGSEYLSYDLSQ---NPIQSSSSEITLSFKTWQRNG 298
Query: 70 LILHADKA 77
LILH K+
Sbjct: 299 LILHTGKS 306
>sp|A1XQY1|NR3BA_DANRE Neurexin-3b OS=Danio rerio GN=nrxn3b PE=2 SV=1
Length = 1686
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
ATFRG E+ YD ++ PI SS D I+L F+T GLILH K+
Sbjct: 255 ATFRGSEYFCYDLSQ---NPIQSSSDEITLSFKTWQRNGLILHTGKS 298
>sp|Q63374|NRX2A_RAT Neurexin-2 OS=Rattus norvegicus GN=Nrxn2 PE=1 SV=3
Length = 1715
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
ATF+G EF YD + PI SS D I+L FRT GL+LH K+
Sbjct: 290 ATFKGNEFFCYD---LSHNPIQSSTDEITLAFRTLQRNGLMLHTGKS 333
>sp|Q9DDD0|NRX1A_CHICK Neurexin-1 (Fragment) OS=Gallus gallus GN=NRXN1 PE=2 SV=1
Length = 1363
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 22 GDEDKAPSE----ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
GD+ K+ + ATF+G E+ YD ++ PI SS D I+L F+T GL+LH K+
Sbjct: 120 GDQGKSKGKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 176
>sp|Q9ULB1|NRX1A_HUMAN Neurexin-1 OS=Homo sapiens GN=NRXN1 PE=2 SV=1
Length = 1477
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 22 GDEDKAPSE----ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
GD+ K+ + ATF+G E+ YD ++ PI SS D I+L F+T GL+LH K+
Sbjct: 271 GDQGKSKGKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 327
>sp|Q9CS84|NRX1A_MOUSE Neurexin-1 OS=Mus musculus GN=Nrxn1 PE=1 SV=3
Length = 1514
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 22 GDEDKAPSE----ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
GD+ K+ + ATF+G E+ YD ++ PI SS D I+L F+T GL+LH K+
Sbjct: 271 GDQGKSKGKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 327
>sp|Q9P2S2|NRX2A_HUMAN Neurexin-2 OS=Homo sapiens GN=NRXN2 PE=2 SV=1
Length = 1712
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
ATF+G EF YD + PI SS D I+L FRT GL+LH K+
Sbjct: 290 ATFKGNEFFCYDLSH---NPIQSSTDEITLAFRTLQRNGLMLHTGKS 333
>sp|A1XQX2|NR1BA_DANRE Neurexin-1b OS=Danio rerio GN=nrxn1b PE=2 SV=1
Length = 1470
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK 76
ATFRG E+ YD + PI SS D I+L FRT GL+LH K
Sbjct: 252 ATFRGSEYFCYDLSL---NPIQSSSDEITLSFRTLQRNGLMLHTGK 294
>sp|A1XQX0|NR1AA_DANRE Neurexin-1a OS=Danio rerio GN=nrxn1a PE=2 SV=1
Length = 1491
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
ATF+G E+ YD + PI SS D I+L F+T GL+LH K+
Sbjct: 264 ATFKGSEYFCYD---LSPNPIQSSSDEITLSFKTLQRNGLMLHTGKS 307
>sp|Q9BZ76|CNTP3_HUMAN Contactin-associated protein-like 3 OS=Homo sapiens GN=CNTNAP3 PE=2
SV=3
Length = 1288
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 33 FRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
F G L+Y R+ +P+ +D ISL F+ S G++LH
Sbjct: 186 FDGQSALLY---RLDKKPLKPIRDVISLKFKAMQSNGILLH 223
>sp|A0L5W7|RPOC_MAGSM DNA-directed RNA polymerase subunit beta' OS=Magnetococcus sp.
(strain MC-1) GN=rpoC PE=3 SV=1
Length = 1412
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 2 ATHQVYVIPRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQD----- 56
A + V+ ST IL+ NG P++ GL ++ ++ + GE +I S
Sbjct: 494 AQIEARVLMMSTNNILSPANGKPIIVPTQDIILGLYYMTSERANVAGEGMIFSNTMEVKQ 553
Query: 57 -----------TISLYFRTK--HST-GLILHADKAPSEATFRGLEFLV 90
+I FR K H+T G +L AD P F+ + L+
Sbjct: 554 AFDAGVANLHASIQCRFRGKRVHTTVGRMLLADMLPERIDFQAINKLI 601
>sp|Q7NDH1|DNAK_GLOVI Chaperone protein DnaK OS=Gloeobacter violaceus (strain PCC 7421)
GN=dnaK PE=3 SV=1
Length = 638
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 17 LTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYF 62
L + N D+D AP E + L LV D ++ GE I + T+ YF
Sbjct: 100 LHSTNEDKDFAPEEISALVLRKLVDDASKYLGEKITQAVITVPAYF 145
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,077,416
Number of Sequences: 539616
Number of extensions: 1273097
Number of successful extensions: 2295
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2243
Number of HSP's gapped (non-prelim): 41
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)