Query psy6122
Match_columns 98
No_of_seqs 95 out of 97
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 18:12:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3514|consensus 99.7 9.2E-17 2E-21 144.6 8.0 69 22-93 244-315 (1591)
2 KOG3516|consensus 99.2 1.9E-11 4.2E-16 111.0 7.2 64 28-94 177-244 (1306)
3 cd00110 LamG Laminin G domain; 97.9 6.5E-05 1.4E-09 50.5 7.2 57 31-92 2-63 (151)
4 smart00282 LamG Laminin G doma 96.9 0.0038 8.2E-08 41.9 5.8 38 56-93 3-45 (135)
5 PF00054 Laminin_G_1: Laminin 95.9 0.016 3.5E-07 39.7 4.7 32 62-93 1-37 (131)
6 PF02210 Laminin_G_2: Laminin 94.1 0.092 2E-06 33.8 3.9 32 62-93 1-37 (128)
7 KOG3514|consensus 91.5 0.96 2.1E-05 43.1 7.9 64 25-92 659-727 (1591)
8 KOG4289|consensus 88.0 1.4 3.1E-05 43.3 6.2 55 31-91 1320-1378(2531)
9 KOG1219|consensus 87.5 2.4 5.1E-05 43.7 7.5 61 26-92 3682-3745(4289)
10 KOG3516|consensus 74.1 15 0.00032 35.4 7.3 60 27-91 363-427 (1306)
11 KOG4289|consensus 55.5 38 0.00082 34.2 6.3 55 31-90 1543-1602(2531)
12 PF15149 CATSPERB: Cation chan 38.0 32 0.0007 30.3 2.9 37 12-52 110-146 (540)
13 cd05872 Ig_Sema4B_like Immunog 34.6 62 0.0013 21.1 3.2 32 66-97 45-82 (85)
No 1
>KOG3514|consensus
Probab=99.68 E-value=9.2e-17 Score=144.57 Aligned_cols=69 Identities=33% Similarity=0.503 Sum_probs=65.9
Q ss_pred CCCCCCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCCCCeEEEe---eeeEEEEEE
Q psy6122 22 GDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 22 ~~~~k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~gdyltL~---g~~~l~~~~ 93 (98)
..++|+|++|||.|.||++||+++ +||++.+|.|+|.|||+|++|+|||+|++.||+.|. |+++|++.|
T Consensus 244 cekeK~~~eaTF~G~ef~~YDls~---npI~s~~d~itl~FrT~q~ngllfytG~~~dYlnlaL~dGaV~l~~~l 315 (1591)
T KOG3514|consen 244 CEKEKNDGEATFGGDEFVGYDLSQ---NPIRSKKDNITLTFRTVQGNGLLFYTGDEKDYLNLALQDGAVSLSSKL 315 (1591)
T ss_pred cccccCcceEEecCceEEEeeccC---CcccccccceEEEEEEecCceeEEEccCCcceeeEeecCCcEEEEEec
Confidence 356999999999999999999999 899999999999999999999999999999999996 999999876
No 2
>KOG3516|consensus
Probab=99.23 E-value=1.9e-11 Score=111.00 Aligned_cols=64 Identities=30% Similarity=0.429 Sum_probs=59.2
Q ss_pred CceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-CCCCCeEEEe---eeeEEEEEEE
Q psy6122 28 PSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-DKAPSEATFR---GLEFLVYEYC 94 (98)
Q Consensus 28 ~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G~~gdyltL~---g~~~l~~~~~ 94 (98)
-+++.|||++++.||+.+ +++++.+|+|+|+|||++++|+|+|+ |++|||++|. |...|.+|+-
T Consensus 177 s~vi~fdg~s~~~yr~~~---~~m~s~~d~is~~Fkt~~sdGvllh~eg~QGd~itlql~~~kl~l~ld~G 244 (1306)
T KOG3516|consen 177 SPVIYFDGSSSLLYRFHR---KLMSSLKDVISLKFKTMQSDGVLLHGEGQQGDYITLQLIGGKLVLILDLG 244 (1306)
T ss_pred CceeEECCccceeeeccc---cccccccceeEEEEEeeccceeEEEcccCCCCEEEEEEeCCEEEEEEecC
Confidence 368999999999999999 99999999999999999999999999 9999999996 7777777764
No 3
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=97.91 E-value=6.5e-05 Score=50.52 Aligned_cols=57 Identities=26% Similarity=0.427 Sum_probs=45.9
Q ss_pred EEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCC--CCeEEEe---eeeEEEEE
Q psy6122 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA--PSEATFR---GLEFLVYE 92 (98)
Q Consensus 31 atF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~--gdyltL~---g~~~l~~~ 92 (98)
++|+|.+++.|.... .+ .....|++.|||.+.+|+||+.+.. .+|+.|. |...+.++
T Consensus 2 ~~F~g~~~i~~~~~~---~~--~~~~~i~~~frt~~~~g~l~~~~~~~~~~~~~l~l~~g~l~~~~~ 63 (151)
T cd00110 2 VSFSGSSYVRLPTLP---AP--RTRLSISFSFRTTSPNGLLLYAGSQNGGDFLALELEDGRLVLRYD 63 (151)
T ss_pred eEeCCCceEEecCCC---CC--cceeEEEEEEEeCCCCeEEEEecCCCCCCEEEEEEECCEEEEEEc
Confidence 679999988888765 33 6778899999999999999999554 8898886 75555554
No 4
>smart00282 LamG Laminin G domain.
Probab=96.88 E-value=0.0038 Score=41.92 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=31.0
Q ss_pred CeEEEEEeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122 56 DTISLYFRTKHSTGLILHADK--APSEATFR---GLEFLVYEY 93 (98)
Q Consensus 56 D~IsL~FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~ 93 (98)
..|++.|||.+.+|+||+.+. ..+|+.+. |...+.++.
T Consensus 3 ~~i~~~frt~~~~g~l~~~~~~~~~~~l~l~l~~g~l~~~~~~ 45 (135)
T smart00282 3 LSISFSFRTTSPNGLLLYAGSKNGGDYLALELRDGRLVLRYDL 45 (135)
T ss_pred eEEEEEEEeCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEC
Confidence 469999999999999999954 78899986 776666553
No 5
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=95.95 E-value=0.016 Score=39.69 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=26.9
Q ss_pred EeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122 62 FRTKHSTGLILHADK--APSEATFR---GLEFLVYEY 93 (98)
Q Consensus 62 FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~ 93 (98)
|||.+++|+||+.|+ ..||+.|. |..-+.||+
T Consensus 1 frT~~~~Gllly~g~~~~~dfial~L~~G~l~~~~~~ 37 (131)
T PF00054_consen 1 FRTSEPNGLLLYLGSKDGKDFIALELRDGRLEFRYNL 37 (131)
T ss_dssp EEESSSSEEEEEEESSTTSSEEEEEEETTEEEEEEES
T ss_pred CccCCCCceEEECCcCCCCCEEEEEEECCEEEEEEeC
Confidence 899999999999944 56899996 888887775
No 6
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=94.11 E-value=0.092 Score=33.80 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=24.2
Q ss_pred EeccccceEEEeeCCCC--CeEEEe---eeeEEEEEE
Q psy6122 62 FRTKHSTGLILHADKAP--SEATFR---GLEFLVYEY 93 (98)
Q Consensus 62 FKT~q~~GlLlH~G~~g--dyltL~---g~~~l~~~~ 93 (98)
|||.+.+|+||+.+... +|+.|. |...+.+++
T Consensus 1 Frt~~~~g~Ll~~~~~~~~~~l~l~l~~g~l~~~~~~ 37 (128)
T PF02210_consen 1 FRTRSPNGLLLYIGSEDNGDFLSLELVDGRLVVRYNL 37 (128)
T ss_dssp EEESSSSEEEEEEEESTTSEEEEEEEETTEEEEEEES
T ss_pred CccCCCCEeEEEEcCCCCCEEEEEEEECCEEEEEEEc
Confidence 89999999999993333 588886 766666543
No 7
>KOG3514|consensus
Probab=91.49 E-value=0.96 Score=43.09 Aligned_cols=64 Identities=14% Similarity=0.293 Sum_probs=52.6
Q ss_pred CCCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee--CCCCCeEEEe---eeeEEEEE
Q psy6122 25 DKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA--DKAPSEATFR---GLEFLVYE 92 (98)
Q Consensus 25 ~k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~--G~~gdyltL~---g~~~l~~~ 92 (98)
++|..++.|+|.++...-+.+ .+.+.-+.|+++|||-++-|+||-+ -.+.|.|.|. |-+=|.+.
T Consensus 659 erE~t~ls~nGs~~m~i~L~~----~~~tq~E~v~iRF~t~r~~Gll~~Tta~~s~D~l~l~L~~g~vkl~v~ 727 (1591)
T KOG3514|consen 659 EREATALSYNGSMSMKIVLPH----TMHTQAEDVSIRFRTQRAYGLLFATTARGSADTLRLELDAGQVKLFVN 727 (1591)
T ss_pred cceeeeEEEcCeeeEEEEecc----cceeecceEEEEEEecccceeEEEeccCCCCceEEEEEecceEEEEEe
Confidence 578889999999998888864 5778889999999999999999999 5577888775 65555543
No 8
>KOG4289|consensus
Probab=87.99 E-value=1.4 Score=43.35 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=41.8
Q ss_pred EEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC-CCCeEEEe---eeeEEEE
Q psy6122 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK-APSEATFR---GLEFLVY 91 (98)
Q Consensus 31 atF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~-~gdyltL~---g~~~l~~ 91 (98)
.+|.+++++.++.-. +.. +-.++|+|.|.+.+|+|++.|+ .-|++.|+ +-+=|.|
T Consensus 1320 rSFp~~sfv~frglr---qRf---h~TlslsfaT~~~nGlL~ynGnekhDFvalevVd~qvqltf 1378 (2531)
T KOG4289|consen 1320 RSFPPESFVTFRGLR---QRF---HFTLSLSFATIERNGLLLYNGNEKHDFVALEVVDEQVQLTF 1378 (2531)
T ss_pred eccCchheEEEeccc---cce---EEEEEEEEEEeeecceEEecCCcccceEeeeeeeeeEEEEE
Confidence 569999998887755 433 4459999999999999999964 67888886 5544444
No 9
>KOG1219|consensus
Probab=87.50 E-value=2.4 Score=43.73 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=48.2
Q ss_pred CCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCCCCeEEEe---eeeEEEEE
Q psy6122 26 KAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFR---GLEFLVYE 92 (98)
Q Consensus 26 k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~gdyltL~---g~~~l~~~ 92 (98)
+...++++.|.++.-|+++.+ +.+.-.+.++-||.|.+|+++++- .-|++-|+ |..+|.+|
T Consensus 3682 ~g~~elS~tGnSYveyrlse~-----~n~~~kl~frLkT~~sngIiM~tr-~~d~~iLkLv~G~~~l~~~ 3745 (4289)
T KOG1219|consen 3682 QGDFELSSTGNSYVEYRLSEN-----QNTRMKLGFRLKTLQSNGIIMYTR-KTDLAILKLVGGSPQLLAD 3745 (4289)
T ss_pred CCcceEeecCceeEEEEcccc-----cccceEEEEEEEecccCcEEEEEc-CCceEEEEecCCcEEEEEe
Confidence 345789999999999999872 222256788889999999999995 45677776 88888876
No 10
>KOG3516|consensus
Probab=74.11 E-value=15 Score=35.44 Aligned_cols=60 Identities=25% Similarity=0.302 Sum_probs=39.3
Q ss_pred CCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee--CCCCCeEEEe---eeeEEEE
Q psy6122 27 APSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA--DKAPSEATFR---GLEFLVY 91 (98)
Q Consensus 27 ~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~--G~~gdyltL~---g~~~l~~ 91 (98)
.+.-++|.+.+ +|-.-+ .-.....=.+|+.|||+..+|+|+++ ..+.-++.+- |-.++.+
T Consensus 363 ~~~pvtF~~ss--s~~~lp---g~~~~~~l~vSF~FRtw~~~G~ll~~~~~e~~g~v~~fl~eg~~~~~i 427 (1306)
T KOG3516|consen 363 QIIPVTFGNSS--SYLRLP---GNPNPDRLSVSFQFRTWNKTGLLLFSELKEGSGEVLLFLKEGKKFLQI 427 (1306)
T ss_pred CCCCeEecccc--eeEEcC---CCCCCCceeeEEEEEeccccCceeeeeeccCCceEEEEEeCCeEEEEE
Confidence 34557888877 333333 22344455689999999999999999 5554555552 6655543
No 11
>KOG4289|consensus
Probab=55.52 E-value=38 Score=34.21 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=38.2
Q ss_pred EEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee--CCCCCeEEEe---eeeEEE
Q psy6122 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA--DKAPSEATFR---GLEFLV 90 (98)
Q Consensus 31 atF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~--G~~gdyltL~---g~~~l~ 90 (98)
-.|+|++.+++.- + ....|.-=.++|.|||++.+|+|+.. |+..- ++|. |..-+.
T Consensus 1543 q~frG~sl~sw~~-~---~~~vSvPwylsl~FRTr~ad~vl~~~~~~~rst-~~lqld~g~l~~~ 1602 (2531)
T KOG4289|consen 1543 QHFRGHSLVSWEG-L---PSQVSVPWYLSLMFRTRRADGVLMQAEFGGRST-YNLQLDDGTLKYN 1602 (2531)
T ss_pred hhccccceeeecC-C---CcceecceEEEEEEEeeccccEEEEEEeCCCce-EEEEEcCCEEEEE
Confidence 4689998777652 2 33455566799999999999999999 44333 5553 654443
No 12
>PF15149 CATSPERB: Cation channel sperm-associated protein subunit beta protein family
Probab=38.02 E-value=32 Score=30.35 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.5
Q ss_pred CCceeeeccCCCCCCCCceEEEeCCcceEEecccCCCccee
Q psy6122 12 STPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPII 52 (98)
Q Consensus 12 ~~~~~~~~~~~~~~k~~~vatF~G~~~LsYdls~~~gk~i~ 52 (98)
.-||++++| ++.|.-.+|.-.+|+.|++++..|+..+
T Consensus 110 ~AlA~ATMP----~~v~~n~tf~~~~WfLYnFG~~~gr~W~ 146 (540)
T PF15149_consen 110 NALALATMP----ERVPNNMTFPKDSWFLYNFGQKNGRTWK 146 (540)
T ss_pred chhhcccCc----ccccccceeccceEEEEeccccCCceEE
Confidence 456777777 5577889999999999999885555433
No 13
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=34.57 E-value=62 Score=21.15 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=26.1
Q ss_pred ccceEEEee---CCCCCeEEEe---eeeEEEEEEEEEe
Q psy6122 66 HSTGLILHA---DKAPSEATFR---GLEFLVYEYCLIV 97 (98)
Q Consensus 66 q~~GlLlH~---G~~gdyltL~---g~~~l~~~~~~~~ 97 (98)
-.+|+|+.. +++|.|...+ |+..++.-|+|-|
T Consensus 45 ~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 45 GTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred eCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence 466777776 6789999986 9999999999865
Done!