Query psy6122
Match_columns 98
No_of_seqs 95 out of 97
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 18:12:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h0b_A Neurexin-1-alpha; B-san 99.1 3.1E-10 1.1E-14 79.8 8.8 66 25-93 2-70 (184)
2 3qcw_A Neurexin-1-alpha; synap 98.9 2.1E-09 7.3E-14 94.8 8.6 65 26-93 229-296 (1245)
3 2r16_A Neurexin-1-alpha; beta- 98.8 1.3E-08 4.4E-13 72.1 7.9 65 25-93 2-71 (182)
4 3v64_A Low-density lipoprotein 98.6 2.5E-07 8.7E-12 65.9 9.1 62 29-93 3-80 (191)
5 2r1d_A Neurexin-1-beta, neurex 98.5 2.2E-07 7.4E-12 68.8 7.2 62 29-93 41-108 (226)
6 2r1b_A Neurexin-1-beta, neurex 98.5 3E-07 1E-11 67.4 7.6 65 27-93 9-80 (220)
7 3pve_A Agrin, AGRN protein; mR 98.5 4.9E-07 1.7E-11 64.1 7.7 65 26-93 7-80 (189)
8 3bod_A Neurexin-1-alpha; neure 98.5 5.6E-07 1.9E-11 63.4 7.5 64 28-93 4-74 (178)
9 1pz7_A Agrin; structural prote 98.4 2.2E-06 7.6E-11 61.3 8.6 65 29-93 13-93 (204)
10 3sh4_A LG3 peptide; actin disa 98.3 1.9E-06 6.4E-11 61.5 7.0 63 28-93 5-79 (195)
11 1h30_A GAS6, growth-arrest-spe 98.2 3.6E-06 1.2E-10 66.0 7.1 58 31-93 43-105 (422)
12 2wjs_A Laminin subunit alpha-2 98.2 1.7E-06 5.9E-11 70.4 5.0 58 31-93 13-75 (608)
13 2jd4_A Laminin subunit alpha-1 98.0 2.2E-05 7.5E-10 60.1 7.6 63 27-93 18-87 (383)
14 1dyk_A Laminin alpha 2 chain; 97.8 5.5E-05 1.9E-09 58.5 6.9 61 29-93 34-101 (394)
15 2jd4_A Laminin subunit alpha-1 97.8 5E-05 1.7E-09 58.1 6.5 61 29-93 199-263 (383)
16 1d2s_A SHBG, sex hormone-bindi 97.7 3.9E-05 1.3E-09 53.8 5.1 54 33-93 10-70 (170)
17 3asi_A Neurexin-1-alpha; beta- 97.7 0.00012 4E-09 56.9 7.6 59 29-93 6-69 (410)
18 2wjs_A Laminin subunit alpha-2 97.6 9.8E-05 3.4E-09 60.1 6.8 60 30-93 205-269 (608)
19 1f5f_A SHBG, sex hormone-bindi 97.6 0.00021 7.2E-09 51.0 6.8 62 25-93 10-82 (205)
20 1dyk_A Laminin alpha 2 chain; 97.2 0.00057 1.9E-08 52.8 6.0 59 30-93 213-275 (394)
21 1h30_A GAS6, growth-arrest-spe 97.0 0.0011 3.7E-08 51.9 5.9 54 28-84 219-282 (422)
22 3asi_A Neurexin-1-alpha; beta- 96.9 0.0017 5.9E-08 50.3 6.0 62 30-93 226-294 (410)
23 3qcw_A Neurexin-1-alpha; synap 96.9 0.0023 7.7E-08 56.8 7.3 63 27-93 657-724 (1245)
24 2qfm_A Spermine synthase; sper 27.1 1E+02 0.0034 24.4 5.1 35 60-94 35-74 (364)
25 3hr5_R M1prime-derived peptide 20.3 44 0.0015 18.3 1.3 13 65-77 6-18 (35)
No 1
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=99.12 E-value=3.1e-10 Score=79.76 Aligned_cols=66 Identities=38% Similarity=0.595 Sum_probs=58.3
Q ss_pred CCCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCCCCeEEEe---eeeEEEEEE
Q psy6122 25 DKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 25 ~k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~gdyltL~---g~~~l~~~~ 93 (98)
+|++..++|+|.+++.|++.. .++......|++.|||.+++|+|||.|+..||+.|. |...+.+|+
T Consensus 2 ~~~~~~~~F~G~sy~~~~~~~---~~~~~~~~~isl~frT~~~~GlLl~~g~~~d~l~l~L~~G~l~~~~~~ 70 (184)
T 2h0b_A 2 SKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINL 70 (184)
T ss_dssp --CCCEEEEESSEEEEEECSS---SCEEESEEEEEEEEEESCSCEEEEEECCTTEEEEEEEETTEEEEEEEE
T ss_pred CcccceeEECCceEEEEcccc---CccccCccEEEEEEEeCCCCEEEEEeCCCCCEEEEEEECCEEEEEEEC
Confidence 578899999999999999987 777777889999999999999999998889999996 888888875
No 2
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=98.94 E-value=2.1e-09 Score=94.81 Aligned_cols=65 Identities=38% Similarity=0.602 Sum_probs=59.8
Q ss_pred CCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCCCCeEEEe---eeeEEEEEE
Q psy6122 26 KAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 26 k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~gdyltL~---g~~~l~~~~ 93 (98)
++..+++|+|++++.|++.+ +++.+..+.|+|+|||.+++|+|||+|+.+||+.|. |...|.+|+
T Consensus 229 ~~~~~~~F~G~~~~~y~~~~---~~~~~~~~~i~l~FrT~~~~GlLl~~g~~~d~l~L~L~~G~l~l~~~l 296 (1245)
T 3qcw_A 229 KEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINL 296 (1245)
T ss_dssp --CCEEEECSSCEEEEECTT---SCEEESEEEEEEEEECSCSCEEEEEECSSSEEEEEEEETTEEEEEEEE
T ss_pred cccceeeeCCcEEEEEcccc---CcccccccEEEEEEEeCCCCceEEEecCCCCEEEEEEECCEEEEEEEc
Confidence 45688999999999999998 999999999999999999999999999999999996 999999986
No 3
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}
Probab=98.82 E-value=1.3e-08 Score=72.13 Aligned_cols=65 Identities=14% Similarity=0.316 Sum_probs=52.9
Q ss_pred CCCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeC--CCCCeEEEe---eeeEEEEEE
Q psy6122 25 DKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHAD--KAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 25 ~k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G--~~gdyltL~---g~~~l~~~~ 93 (98)
+|+...++|+|.+++.|++.. ........|++.|||.+++|+||+.+ +..||+.|. |...+.||+
T Consensus 2 ~~~~~~~~F~G~sy~~~~~~~----~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~~~~~~ 71 (182)
T 2r16_A 2 SREATVLSYDGSMFMKIQLPV----VMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNL 71 (182)
T ss_dssp ---CCEEEEESSCCEEEEEEE----EEEESEEEEEEEEECSCSSEEEEEEECSSSCCEEEEEEETTEEEEEEES
T ss_pred CcccccEEECCCceEEEECCC----cCCccceEEEEEEEECCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEC
Confidence 578889999999999998753 23466788999999999999999994 578999996 888888875
No 4
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A
Probab=98.61 E-value=2.5e-07 Score=65.88 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=50.8
Q ss_pred ceEEEeCCcceEEecccCCCcc----------eeecCCeEEEEEeccccceEEEeeCC---CCCeEEEe---eeeEEEEE
Q psy6122 29 SEATFRGLEFLVYDQTRIGGEP----------IISSQDTISLYFRTKHSTGLILHADK---APSEATFR---GLEFLVYE 92 (98)
Q Consensus 29 ~vatF~G~~~LsYdls~~~gk~----------i~s~~D~IsL~FKT~q~~GlLlH~G~---~gdyltL~---g~~~l~~~ 92 (98)
+.++|+|.+++.|+... .+ .......|++.|||.+++|+||+.|. ..||+.|. |...+.||
T Consensus 3 ~~~~F~G~sy~~y~~~~---~~~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~~~d~l~l~L~~G~l~~~~~ 79 (191)
T 3v64_A 3 ETLAFDGRTYIEYLNAV---IESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAERADYMALAIVDGHLQLSYD 79 (191)
T ss_dssp CEEEEESSCCEEEECSC---CCHHHHCCCCCCEEESEEEEEEEEECSCSSEEEEEESCCSTTCCEEEEEEETTEEEEEEE
T ss_pred ccceecCceeEEEcccc---ccccccccccccccccceEEEEEEEeCCCCeEEEEeCCCCCCCcEEEEEEECCEEEEEEE
Confidence 57899999999999864 22 23556789999999999999999955 67999996 88777776
Q ss_pred E
Q psy6122 93 Y 93 (98)
Q Consensus 93 ~ 93 (98)
+
T Consensus 80 ~ 80 (191)
T 3v64_A 80 L 80 (191)
T ss_dssp S
T ss_pred C
Confidence 4
No 5
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=98.53 E-value=2.2e-07 Score=68.84 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=50.8
Q ss_pred ceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee---CCCCCeEEEe---eeeEEEEEE
Q psy6122 29 SEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA---DKAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 29 ~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~---G~~gdyltL~---g~~~l~~~~ 93 (98)
++..|+| +++.|++.+. +......+.|+|.|||.+++|+||+. +..+||+.|. |...+.||+
T Consensus 41 y~f~~~g-s~i~y~~~~~--~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~~dfi~L~L~~G~l~~~~~~ 108 (226)
T 2r1d_A 41 YIFSKGG-GQITYKWPPN--DRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV 108 (226)
T ss_dssp EEEEEEE-EEEEEECCGG--GCCCBSEEEEEEEEECCCSSEEEEEEEECTTCCCEEEEEEETTEEEEEEES
T ss_pred EEEecCC-cEEEEECCcc--ccccccccEEEEEEEeCCCCEEEEEecCCCCCCCEEEEEEECCEEEEEEEC
Confidence 4788999 9999999761 23455667999999999999999996 3578999996 888888874
No 6
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=98.51 E-value=3e-07 Score=67.44 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=50.6
Q ss_pred CCceEEEe-CCcceEEecccCCCcceeecCCeEEEEEeccccceEEEe--e-CCCCCeEEEe---eeeEEEEEE
Q psy6122 27 APSEATFR-GLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH--A-DKAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 27 ~~~vatF~-G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH--~-G~~gdyltL~---g~~~l~~~~ 93 (98)
+.-..+|. |.+++.|++.+. ....+..+.|+|.|||.+++|+||| . +...||+.|. |...+.||+
T Consensus 9 ~~t~~~F~~g~s~l~y~~~~~--~~~~~~~~~isl~FrT~~~~GlLly~~~~~~~~dfi~LeL~~G~l~~~~~~ 80 (220)
T 2r1b_A 9 AGTTYIFSKGGGQITYKWPPN--DRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV 80 (220)
T ss_dssp CSSEEEEEEEEEEEEEECCGG--GCCCBSEEEEEEEEECCCSSEEEEEEEESTTCCCEEEEEEETTEEEEEEES
T ss_pred CCceEEECCCCeEEEEECCCC--CcccccCcEEEEEEEeCCCCEEEEEecCCCCCCCeEEEEEECCEEEEEEEC
Confidence 33457895 668899998651 2345556789999999999999999 4 3578999996 888888875
No 7
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=98.48 E-value=4.9e-07 Score=64.15 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=50.5
Q ss_pred CCCceEEEeCCcceEEecccCCCccee--ecCCeEEEEEeccccceEEEeeCC----CCCeEEEe---eeeEEEEEE
Q psy6122 26 KAPSEATFRGLEFLVYDQTRIGGEPII--SSQDTISLYFRTKHSTGLILHADK----APSEATFR---GLEFLVYEY 93 (98)
Q Consensus 26 k~~~vatF~G~~~LsYdls~~~gk~i~--s~~D~IsL~FKT~q~~GlLlH~G~----~gdyltL~---g~~~l~~~~ 93 (98)
..+.+++|+|.+++.|.... ...+ ...-.|++.|||.+++|+||+.+. .+||+.|. |...+.+|+
T Consensus 7 ~~~~~~~F~g~syl~~~~~~---~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~~~~d~l~l~L~~G~l~~~~~~ 80 (189)
T 3pve_A 7 SRPFLADFNGFSYLELKGLH---TFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDL 80 (189)
T ss_dssp CCBCCEEEESSCEEEECCGG---GC-------CEEEEEEEESSSCEEEEEEESCC-CCSCEEEEEEETTEEEEEEES
T ss_pred CCceeeEECCCceEEEcCcc---cccccccceEEEEEEEEeCCCCEEEEEecCCCCCCCCeEEEEEECCEEEEEEec
Confidence 35788999999999998865 3211 346789999999999999999953 58999996 888887774
No 8
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=98.46 E-value=5.6e-07 Score=63.45 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=50.2
Q ss_pred CceEEEe-CCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee---CCCCCeEEEe---eeeEEEEEE
Q psy6122 28 PSEATFR-GLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA---DKAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 28 ~~vatF~-G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~---G~~gdyltL~---g~~~l~~~~ 93 (98)
.-...|. |.+++.|++.+. .......+.|++.|||.+++|+|||. +...||+.|. |...+.||+
T Consensus 4 ~t~~~F~~~~s~l~y~~~~~--~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~~dfi~l~L~~G~l~~~~~~ 74 (178)
T 3bod_A 4 GSTYIFSKGGGQITYKWPPN--DRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV 74 (178)
T ss_dssp SCEEEEEEEEEEEEEECCTT--SCCCBSEEEEEEEEECCCSSEEEEEEEESSSSCCEEEEEEETTEEEEEEES
T ss_pred ceEEEECCCCcEEEEECCCc--CCCCccccEEEEEEEECCCCEEEEEEcCCCCCCCEEEEEEECCEEEEEEEC
Confidence 3457796 468899998761 23455677999999999999999994 5678999996 888888874
No 9
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=98.36 E-value=2.2e-06 Score=61.26 Aligned_cols=65 Identities=18% Similarity=0.369 Sum_probs=48.8
Q ss_pred ceEEEeCCcceEEecccCCC---------cc-eeecCCeEEEEEeccccceEEEeeCC---CCCeEEEe---eeeEEEEE
Q psy6122 29 SEATFRGLEFLVYDQTRIGG---------EP-IISSQDTISLYFRTKHSTGLILHADK---APSEATFR---GLEFLVYE 92 (98)
Q Consensus 29 ~vatF~G~~~LsYdls~~~g---------k~-i~s~~D~IsL~FKT~q~~GlLlH~G~---~gdyltL~---g~~~l~~~ 92 (98)
..++|+|.+++.|....... .+ .......|++.|||.+.+|+||+.|+ ..||+.|. |...+.||
T Consensus 13 ~~~~F~G~sy~~~~~~~~~~~~~l~~~~~~~~~~~~~~~is~~frT~~~~GlLl~~g~~~~~~dfl~l~L~~G~l~~~~~ 92 (204)
T 1pz7_A 13 EAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYD 92 (204)
T ss_dssp CCEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECCSSEEEEEESCCSTTCCEEEEEEETTEEEEEEE
T ss_pred cceeECCceeEEEcCcccccccccccccccccccceeEEEEEEEEcCCCCeEEEEeCCCCCCCCeEEEEEECCEEEEEEE
Confidence 45889999999998643000 01 12245679999999999999999965 58999986 88888877
Q ss_pred E
Q psy6122 93 Y 93 (98)
Q Consensus 93 ~ 93 (98)
+
T Consensus 93 ~ 93 (204)
T 1pz7_A 93 L 93 (204)
T ss_dssp S
T ss_pred C
Confidence 4
No 10
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=98.29 E-value=1.9e-06 Score=61.50 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=49.7
Q ss_pred CceEEEeCCcceEEecccCCCcce--eecCCeEEEEEeccccceEEEeeC-------CCCCeEEEe---eeeEEEEEE
Q psy6122 28 PSEATFRGLEFLVYDQTRIGGEPI--ISSQDTISLYFRTKHSTGLILHAD-------KAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 28 ~~vatF~G~~~LsYdls~~~gk~i--~s~~D~IsL~FKT~q~~GlLlH~G-------~~gdyltL~---g~~~l~~~~ 93 (98)
+..+.|+|.+++.+.... .+. ......|++.|||.+.+|+||+.| ...||+.|. |...+.||+
T Consensus 5 ~~~~~F~G~syl~lp~~~---~~~~~~~~~~~is~~frT~~~~GlLl~~~~~~~~~~~~~d~l~l~L~~G~l~~~~~~ 79 (195)
T 3sh4_A 5 QYGAYFHDDGFLAFPGHV---FSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQL 79 (195)
T ss_dssp TTEEEEEEEEEEEECGGG---GCCCSTTCCEEEEEEEEECCSSEEEEEECCCTTCTTSTTCEEEEEEETTEEEEEEEC
T ss_pred cccCEECCCEEEEEcccc---ccccccccceEEEEEEEeCCCCcEEEEecccccCCCCCCcEEEEEEeCCEEEEEEEC
Confidence 577999999999987753 222 233568999999999999999985 357999986 888777774
No 11
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=98.19 E-value=3.6e-06 Score=65.97 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=44.4
Q ss_pred EEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeC--CCCCeEEEe---eeeEEEEEE
Q psy6122 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHAD--KAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 31 atF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G--~~gdyltL~---g~~~l~~~~ 93 (98)
.+|+|.+++.|++.. .+ .....|+++|||.+++|+|||.| +.+||+.|. |...+.||+
T Consensus 43 ~~F~g~~~~~~~f~~---~~--~~~~~is~~FrT~~~~GlLly~~~~~~~df~~l~L~~G~l~~~~~~ 105 (422)
T 1h30_A 43 RMFSGTPVIRLRFKR---LQ--PTRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRY 105 (422)
T ss_dssp C-----CCEEEECCB---SS--CCCCEEEEEEEECCSSEEEEEEESCTTSEEEEEEEETTEEEEEEEE
T ss_pred eEECCCceEEEEccC---CC--CCceEEEEEEEeCCCCeEEEEECCCCCCcEEEEEEECCEEEEEEEC
Confidence 689999999998865 32 57789999999999999999994 358999996 888888875
No 12
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}
Probab=98.16 E-value=1.7e-06 Score=70.44 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=45.6
Q ss_pred EEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCC--CCeEEEe---eeeEEEEEE
Q psy6122 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA--PSEATFR---GLEFLVYEY 93 (98)
Q Consensus 31 atF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~--gdyltL~---g~~~l~~~~ 93 (98)
++|+|..+.+|++. ......+.|+++|||.+++|+|||.|.. +||+.|. |...+.||+
T Consensus 13 ~~F~g~~~~~y~p~-----~~~~~~~~isl~FrT~~~~glLly~~~~~~~dfl~l~L~~G~l~~~~~~ 75 (608)
T 2wjs_A 13 VSSGGDCVRTYRPE-----IKKGSYNNIVVHVKTAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDV 75 (608)
T ss_dssp CC----CEEEECCC-----CSCTTEEEEEEEEEESCSCEEEEEEECSSCSCEEEEEEETTEEEEEEES
T ss_pred EEcCCCeEEEecCC-----CCCcccceEEEEEecCCCceEEEEeCCCCCCcEEEEEEECCEEEEEEEC
Confidence 78999999999962 3556678899999999999999999554 9999996 888888875
No 13
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=97.97 E-value=2.2e-05 Score=60.11 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=48.9
Q ss_pred CCceEEEeC--CcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122 27 APSEATFRG--LEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK--APSEATFR---GLEFLVYEY 93 (98)
Q Consensus 27 ~~~vatF~G--~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~ 93 (98)
.+..++|.+ .+++.|.+.. ... .....|++.|||.+++|+||+.|. ..||+.|. |...+.||+
T Consensus 18 ~~~a~~Fg~~~~S~~~~~~~~---~~~-~~~~~is~~frT~~~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~ 87 (383)
T 2jd4_A 18 VAGAHQFGLSQNSHLVLPLQQ---SDV-RKRLQVQLSIRTFASSGLIYYVAHQNQMDYATLQLQEGRLHFMFDL 87 (383)
T ss_dssp CTTCEECCSSTTCEEEEECCS---CCC-SSEEEEEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEEC
T ss_pred cCcccccCCCCCeeEEEeCCc---hhc-ccceEEEEEEEcCCCCeEEEEeCCCCCCcEEEEEEECCEEEEEEEC
Confidence 346688876 6889998754 322 345689999999999999999943 58999996 888888874
No 14
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=97.77 E-value=5.5e-05 Score=58.47 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=46.3
Q ss_pred ceEEEeC--CcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122 29 SEATFRG--LEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK--APSEATFR---GLEFLVYEY 93 (98)
Q Consensus 29 ~vatF~G--~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~ 93 (98)
....|.+ .+++.|.+.. ... .....|+++|||.+++|+|||.|. ..||+.|. |...+.||+
T Consensus 34 ~a~~Fg~~~~s~~~~~~~~---~~~-~~~~~is~~frT~~~~GlLly~~~~~~~dfi~l~L~~G~l~~~~~~ 101 (394)
T 1dyk_A 34 GSKQFGLSRNSHIAIAFDD---TKV-KNRLTIELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDL 101 (394)
T ss_dssp TCEECCSSTTCEEEEECCG---GGG-SSEEEEEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEES
T ss_pred cceecCCCCCcEEEEEcCc---ccc-ccceEEEEEEEeCCCCeEEEEcCCCCCCceEEEEEECCEEEEEEEC
Confidence 4455654 5677777754 332 346789999999999999999953 68999996 888888875
No 15
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=97.77 E-value=5e-05 Score=58.15 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=46.7
Q ss_pred ceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-CCCCCeEEEe---eeeEEEEEE
Q psy6122 29 SEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-DKAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 29 ~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G~~gdyltL~---g~~~l~~~~ 93 (98)
..++|+|.+++.|.... .+. .....|+|.|||.+.+|+||+. ++..||+.|. |...+.+++
T Consensus 199 ~g~~F~g~sy~~~~~~~---~~~-~~~~~isl~frT~~~~GlLl~~~~~~~d~l~l~L~~G~l~~~~~~ 263 (383)
T 2jd4_A 199 EGTFFEGSGYAALVKEG---YKV-RLDLQITLEFRTTSKNGVLLGISSAKVDAIGLEIVDGKVLFHVNN 263 (383)
T ss_dssp SSEEEEEEEEEEEEEEE---ECC-BSCEEEEEEEEESCSCEEEEEEECSSSCEEEEEEETTEEEEEEES
T ss_pred cCceECCCeEEEEecCc---ccc-CCceEEEEEEEeCCCCEEEEEecCCCCcEEEEEEECCEEEEEEEC
Confidence 34889999999985322 111 2345899999999999999998 5678999996 887777764
No 16
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=97.74 E-value=3.9e-05 Score=53.75 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=40.6
Q ss_pred EeCCc--ceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122 33 FRGLE--FLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK--APSEATFR---GLEFLVYEY 93 (98)
Q Consensus 33 F~G~~--~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~ 93 (98)
|.|.+ ++.|...+ . .+..|++.|||.+++|+||+.+. ..||+.|. |...+.||.
T Consensus 10 F~g~s~~~l~f~~~~---~----~~~~is~~FrT~~~~GlLly~~~~~~~df~~l~L~~G~l~~~~~~ 70 (170)
T 1d2s_A 10 PGQEPIAVMTFDLTK---I----TKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHN 70 (170)
T ss_dssp TCCSCSEEEEEEGGG---C----CCCEEEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEES
T ss_pred CCCCceEEEEecCCC---C----CceEEEEEEEeCCCCEEEEEecCCCCCCEEEEEEeCCEEEEEEEC
Confidence 45554 45666644 1 34589999999999999999943 47999996 888888774
No 17
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=97.69 E-value=0.00012 Score=56.94 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=45.6
Q ss_pred ceEEEe-CCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-CCCCCeEEEe---eeeEEEEEE
Q psy6122 29 SEATFR-GLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-DKAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 29 ~vatF~-G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G~~gdyltL~---g~~~l~~~~ 93 (98)
..++|. +.+++.+..-+ . ...-.|+++|||.+++|+||+. |+..||+.|. |...+.||+
T Consensus 6 ~~v~F~~~~Syl~~p~~~---~---~~~~~is~~frT~~~~GlLly~~~~~~dfi~l~L~~G~l~~~~~~ 69 (410)
T 3asi_A 6 DPVTFKTKSSYVALATLQ---A---YTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDL 69 (410)
T ss_dssp CCEEECSTTCEEEESCCC---C---SSCEEEEEEEECSCSCEEEEEEEBSTTCEEEEEEETTEEEEEEES
T ss_pred cccEeCCCCeeEEeCCCC---C---CceEEEEEEEEeCCCCeEEEEeCCCCCCEEEEEEECCEEEEEEEC
Confidence 458897 56777765432 1 2345799999999999999998 7778999996 888888874
No 18
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}
Probab=97.65 E-value=9.8e-05 Score=60.10 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=47.0
Q ss_pred eEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeC--CCCCeEEEe---eeeEEEEEE
Q psy6122 30 EATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHAD--KAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 30 vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G--~~gdyltL~---g~~~l~~~~ 93 (98)
.++|+|.+++.|.... . .......|+++|||.+++|+||+.| ...||+.|. |...+.||+
T Consensus 205 ~~~F~g~sy~~~~~~~---~-~~~~~~~isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~~~~~~ 269 (608)
T 2wjs_A 205 TIQFDGEGYALVSRPI---R-WYPNISTVMFKFRTFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDL 269 (608)
T ss_dssp CEEEEEEEEEEEECCT---T-CBTTEEEEEEEEEESCSEEEEEEEECTTSSSEEEEEEETTEEEEEEEC
T ss_pred ceEECCCcceEEeccc---c-CCCcceEEEEEEEeCCCCeEEEEecCCCCCceEEEEEECCEEEEEEEC
Confidence 5999999888876533 2 1234568999999999999999994 357999996 888888874
No 19
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=97.56 E-value=0.00021 Score=51.03 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=42.8
Q ss_pred CCCCceEEEeCCc------ceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122 25 DKAPSEATFRGLE------FLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK--APSEATFR---GLEFLVYEY 93 (98)
Q Consensus 25 ~k~~~vatF~G~~------~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~ 93 (98)
++.+..+.|.+.. ++.+.... ..+..|+|.|||.+++|+||+.+. ..||+.|. |...+.||.
T Consensus 10 ~~~~~~~~F~~~~~~~~~~y~~~~~~~-------~~~~~is~~frT~~~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~ 82 (205)
T 1f5f_A 10 AHDPPAVHLSNGPGQEPIAVMTFDLTK-------ITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHN 82 (205)
T ss_dssp ---CCCEESCCTTCCSCSEEEEEEGGG-------CCCCEEEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEES
T ss_pred ccCCccEEeccCCCCcEeEEEEECCCC-------CCceEEEEEEEeCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEC
Confidence 5566778888643 23333322 233689999999999999999943 46999996 888888874
No 20
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=97.22 E-value=0.00057 Score=52.78 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=45.2
Q ss_pred eEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-CCCCCeEEEe---eeeEEEEEE
Q psy6122 30 EATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-DKAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 30 vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G~~gdyltL~---g~~~l~~~~ 93 (98)
-++|.|.+++.+.... + ......|++.|||.+.+|+||+. +...||+.|. |...+.+++
T Consensus 213 g~~F~g~gy~~~~~~~----~-~~~~~~is~~frT~~~~GlLl~~~~~~~~~l~l~L~~G~l~~~~~~ 275 (394)
T 1dyk_A 213 GTYFDGTGFAKAVGGF----K-VGLDLLVEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEKLMFHVDN 275 (394)
T ss_dssp SEEEEEEEEEECCSSB----C-CBSEEEEEEEEEESCSCEEEEEEECSSSCEEEEEEETTEEEEEEES
T ss_pred CceeCCCceeEEcCCc----c-cCCceEEEEEEEeCCCCEEEEEecCCCCCEEEEEEECCEEEEEEEC
Confidence 3779988887765432 1 12356899999999999999998 6788999986 877777764
No 21
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=97.01 E-value=0.0011 Score=51.87 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=39.7
Q ss_pred CceEEEeCCcceEEecccCCCcc--e-----eecCCeEEEEEeccccceEEEeeCC-C--CCeEEEe
Q psy6122 28 PSEATFRGLEFLVYDQTRIGGEP--I-----ISSQDTISLYFRTKHSTGLILHADK-A--PSEATFR 84 (98)
Q Consensus 28 ~~vatF~G~~~LsYdls~~~gk~--i-----~s~~D~IsL~FKT~q~~GlLlH~G~-~--gdyltL~ 84 (98)
+...+|.|.+++.|..+. .+ . ....-.|+|.|||++.+|+||+.+. . .||+.|.
T Consensus 219 ~~g~~F~g~s~~~~~~~~---~~lp~~~~~~~~~~~~is~~fRT~~~~GlLl~~~~~~~~~d~l~l~ 282 (422)
T 1h30_A 219 ERGSFYPGSGFAFYSLDY---MRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPDLRAVPLSVA 282 (422)
T ss_dssp BSSEEECSSCCEEECCCC---BC--------CCBCEEEEEEEEESSSCEEEEEEEEGGGTEEEEEEE
T ss_pred CCCceECCCeEEEEecCc---cccccccccccccceEEEEEEecCCCCEEEEEecCCCcCCCcEEEE
Confidence 345899999999987654 21 1 1124589999999999999999942 2 6888875
No 22
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=96.89 E-value=0.0017 Score=50.31 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=43.9
Q ss_pred eEEE-eCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC---CCCeEEEe---eeeEEEEEE
Q psy6122 30 EATF-RGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK---APSEATFR---GLEFLVYEY 93 (98)
Q Consensus 30 vatF-~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~---~gdyltL~---g~~~l~~~~ 93 (98)
...| .|.+++.|++... .......+.+++.|||.+.+|+||+.+. .+||+.|. |..-+.+++
T Consensus 226 ~~~f~~~~~~~~~~~~~~--~~~~~~~~~i~l~frT~~~~GlLl~~~~~~~~~~~l~l~L~~G~l~~~~~~ 294 (410)
T 3asi_A 226 TYIFSKGGGQITYKWPPN--DRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV 294 (410)
T ss_dssp EEEEEEEEEEEEEECCTT--CCCCBSEEEEEEEEECCCSEEEEEEEEECTTCCCEEEEEEETTEEEEEEES
T ss_pred cccccCCCceEEEecCCC--CCccceeeEEEEEEEeCCCCEEEEEEecCCCCCceEEEEEeCCEEEEEEEC
Confidence 4566 4667888887541 1112234579999999999999999832 37999986 777777663
No 23
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=96.88 E-value=0.0023 Score=56.76 Aligned_cols=63 Identities=14% Similarity=0.312 Sum_probs=48.8
Q ss_pred CCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-C-CCCCeEEEe---eeeEEEEEE
Q psy6122 27 APSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-D-KAPSEATFR---GLEFLVYEY 93 (98)
Q Consensus 27 ~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G-~~gdyltL~---g~~~l~~~~ 93 (98)
+...+.|+|.+++.|.+.. ......+.|+++|||.+++|+||+. + ...||+.|. |..-+.+++
T Consensus 657 ~~~~~~fdGs~~l~~~~~~----~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~l~~nl 724 (1245)
T 3qcw_A 657 EATVLSYDGSMFMKIQLPV----VMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNL 724 (1245)
T ss_dssp ECCEEEEESSCCEEEEEEE----EEEESEEEEEEEEECSSSCEEEEEEEBTTBSCEEEEEEETTEEEEEEES
T ss_pred cccccccCCCCceEEeccc----ccccccceEEEEEEEcCCCEEEEEecCCCCccEEEEEEeCCEEEEEEEC
Confidence 3456899999998887643 3445567899999999999999998 3 468999885 777776653
No 24
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=27.09 E-value=1e+02 Score=24.38 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=29.7
Q ss_pred EEEeccccceEEEee-CCCCCeEEEe----eeeEEEEEEE
Q psy6122 60 LYFRTKHSTGLILHA-DKAPSEATFR----GLEFLVYEYC 94 (98)
Q Consensus 60 L~FKT~q~~GlLlH~-G~~gdyltL~----g~~~l~~~~~ 94 (98)
=.+.|++..|-|.=- |++|..+||| |.+.|=++|+
T Consensus 35 ~~~~~~~~~g~l~~~~~~~~~~~~~r~~~~glv~~~~~~~ 74 (364)
T 2qfm_A 35 ESVHTWQDHGYLATYTNKNGSFANLRIYPHGLVLLDLQSY 74 (364)
T ss_dssp EEEEEETTTEEEEEEECTTSCEEEEEECTTSEEEEEEEEC
T ss_pred hhccccCCCceEEEEecCCCcEEEEEeeccceEEEehhhh
Confidence 356788999988755 9999999999 9999988875
No 25
>3hr5_R M1prime-derived peptide; FAB-peptide complex, immune system; 2.40A {Mus musculus}
Probab=20.33 E-value=44 Score=18.27 Aligned_cols=13 Identities=8% Similarity=0.332 Sum_probs=9.7
Q ss_pred cccceEEEeeCCC
Q psy6122 65 KHSTGLILHADKA 77 (98)
Q Consensus 65 ~q~~GlLlH~G~~ 77 (98)
+-++.+|+|+|++
T Consensus 6 rapdrvlchsgqq 18 (35)
T 3hr5_R 6 RAPDRVLCHSGQQ 18 (35)
T ss_pred cCCceEEeecccc
Confidence 3577899999764
Done!