RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6122
         (98 letters)



>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin
          1beta {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 177

 Score = 32.9 bits (74), Expect = 0.002
 Identities = 5/36 (13%), Positives = 14/36 (38%)

Query: 53 SSQDTISLYFRTKHSTGLILHADKAPSEATFRGLEF 88
          +  D +++ F T     +++  D +     +  L  
Sbjct: 27 TRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHI 62


>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 191

 Score = 32.1 bits (72), Expect = 0.006
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 30 EATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHAD 75
          ++ + G  F      R+  + +  ++      FRT    G++L A 
Sbjct: 33 KSLYLGRMFSGTPVIRLRFKRLQPTRLVAEFDFRTFDPEGILLFAG 78


>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId:
          9031]}
          Length = 195

 Score = 31.4 bits (70), Expect = 0.009
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 11/75 (14%)

Query: 24 EDKAPSEA-TFRGLEFLVYDQTRIGGEPIISSQD----------TISLYFRTKHSTGLIL 72
          +    +EA  F G  ++ Y          +                 L  +T+ + GLIL
Sbjct: 1  KAAGDAEAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLIL 60

Query: 73 HADKAPSEATFRGLE 87
           + K    + +  L 
Sbjct: 61 WSGKGLERSDYIALA 75


>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 170

 Score = 30.1 bits (67), Expect = 0.022
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 32 TFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHAD 75
              +  + +D T+I       ++ + S   RT    G+I + D
Sbjct: 11 GQEPIAVMTFDLTKI-------TKTSSSFEVRTWDPEGVIFYGD 47


>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 185

 Score = 30.2 bits (67), Expect = 0.027
 Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 5/43 (11%)

Query: 33 FRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHAD 75
          F G  F             +     +   FRT   TG++L   
Sbjct: 8  FDGTGFAKAVGG-----FKVGLDLLVEFEFRTTRPTGVLLGVS 45


>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 218

 Score = 29.5 bits (65), Expect = 0.048
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 33 FRGLEFLVYDQTRIGGEPIISSQDT----ISLYFRTKHSTGLILHADKAPSEATFRGLEF 88
          + G  F  Y    +     + ++ T    +  + R    TG++         A    +  
Sbjct: 20 YPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPDLRAVPLSVAL 79

Query: 89 LVYEY 93
          + Y  
Sbjct: 80 VDYHS 84


>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 189

 Score = 29.0 bits (64), Expect = 0.057
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 52 ISSQDTISLYFRTKHSTGLILHAD 75
          + ++ TI L  RT+  +GL+ +  
Sbjct: 36 VKNRLTIELEVRTEAESGLLFYMA 59


>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 229

 Score = 24.5 bits (52), Expect = 2.2
 Identities = 12/54 (22%), Positives = 17/54 (31%)

Query: 36  LEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFRGLEFL 89
           L  L YD T+  G P       I   F    +   +   D         G++ L
Sbjct: 166 LCVLSYDPTKHPGPPFYVPHAEIERLFGKICNIRCLEKVDAFEERHKSWGIDCL 219


>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 186

 Score = 24.0 bits (52), Expect = 3.6
 Identities = 6/28 (21%), Positives = 9/28 (32%)

Query: 41  YDQTRIGGEPIISSQDTISLYFRTKHST 68
                   E  + +Q  I  Y + K  T
Sbjct: 158 NIYKHNSDEKPVRAQAAIYRYLKGKEET 185


>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
           {Azospirillum irakense [TaxId: 34011]}
          Length = 408

 Score = 24.2 bits (52), Expect = 3.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 23  DEDKAPSEATFRGLEFLVYDQTRIGGEP 50
           +E     +A  +G+E+L+  Q   GG P
Sbjct: 168 EEAAPYRDAALKGIEYLLASQFPNGGWP 195


>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula
          gracilis [TaxId: 5286]}
          Length = 95

 Score = 22.4 bits (47), Expect = 9.6
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 6  VYVIPRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTK 65
           Y+IPR    ++                  ++ ++    R+  +P ISS  TI      +
Sbjct: 29 AYIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRL--DPTISSDGTIEGIEVLR 86

Query: 66 HSTGL 70
          H+ GL
Sbjct: 87 HNVGL 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 321,946
Number of extensions: 11722
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 11
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)