BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6124
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GTW|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Amp
 pdb|4GTW|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Amp
          Length = 823

 Score = 29.3 bits (64), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 113 LLPVVKEVGTGGTRQIAKIPTHSTTTWTTLFPMHPCIVTGPYQE 156
           LLPV+ ++   GT      P + T T    FP H  IVTG Y E
Sbjct: 131 LLPVISKLKNCGTYTKNXRPXYPTKT----FPNHYSIVTGLYPE 170


>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
 pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
 pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
 pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
 pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
 pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
          Length = 823

 Score = 29.3 bits (64), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 113 LLPVVKEVGTGGTRQIAKIPTHSTTTWTTLFPMHPCIVTGPYQE 156
           LLPV+ ++   GT      P + T T    FP H  IVTG Y E
Sbjct: 131 LLPVISKLKNCGTYTKNMRPMYPTKT----FPNHYSIVTGLYPE 170


>pdb|4B56|A Chain A, Structure Of Ectonucleotide
           Pyrophosphatase-Phosphodiesterase-1 (Npp1)
 pdb|4B56|B Chain B, Structure Of Ectonucleotide
           Pyrophosphatase-Phosphodiesterase-1 (Npp1)
          Length = 820

 Score = 28.9 bits (63), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 113 LLPVVKEVGTGGTRQIAKIPTHSTTTWTTLFPMHPCIVTGPYQE 156
           LLPV+ ++   GT      P + T T    FP H  IVTG Y E
Sbjct: 127 LLPVISKLKNCGTYTKNMRPMYPTKT----FPNHYSIVTGLYPE 166


>pdb|3KF6|A Chain A, Crystal Structure Of S. Pombe Stn1-Ten1 Complex
          Length = 159

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 7   LGPAFYFQDS-QMGGVAIALGHGSVLFECAKHELHATTALRRPNRLHPTRISLVFYQHRN 65
           L   F  QD   M   AI++  G+V+  C   ++++            + + L+      
Sbjct: 78  LRVVFIIQDDFSMSKRAISMSPGNVV--CVFGKINSFR----------SEVELIAQSFEE 125

Query: 66  LNRPKHGWDEWEEKMRQRKN 85
           L  P   W  W+++MR +KN
Sbjct: 126 LRDPNDEWKAWQKRMRYKKN 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,434,878
Number of Sequences: 62578
Number of extensions: 138799
Number of successful extensions: 239
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 4
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)