BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6124
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43151|TET3_HUMAN Methylcytosine dioxygenase TET3 OS=Homo sapiens GN=TET3 PE=2 SV=3
Length = 1660
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Query: 13 FQDSQMGGVAIALGHGSVLFECAKHELHATTALRRPNRLHPTRISLVFYQHRNLNRPKHG 72
F D +GGVA+A HGS+L ECA+ ELHATT L++PNR HPTRISLVFYQH+NLN+P HG
Sbjct: 1511 FLDENIGGVAVAPAHGSILIECARRELHATTPLKKPNRCHPTRISLVFYQHKNLNQPNHG 1570
Query: 73 WDEWEEKMRQ------RKNGTAASTGTSTTTTTTTSTNVHTSDIQHLLPVVKE-VGTGGT 125
WE KM+Q + AA G P KE G T
Sbjct: 1571 LALWEAKMKQLAERARARQEEAARLGLGQQEAKLYGKKRKWGGTVVAEPQQKEKKGVVPT 1630
Query: 126 RQIAKIPTHSTTTWTTLFPMHPCIVTGPY 154
RQ +PT S T ++ VTGPY
Sbjct: 1631 RQALAVPTDSAVTVSSYAYTK---VTGPY 1656
>sp|Q8BG87|TET3_MOUSE Methylcytosine dioxygenase TET3 OS=Mus musculus GN=Tet3 PE=1 SV=3
Length = 1668
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Query: 13 FQDSQMGGVAIALGHGSVLFECAKHELHATTALRRPNRLHPTRISLVFYQHRNLNRPKHG 72
F D +GGVA+A H S+L ECA+ ELHATT L++PNR HPTRISLVFYQH+NLN+P HG
Sbjct: 1519 FLDENIGGVAVAPAHCSILIECARRELHATTPLKKPNRCHPTRISLVFYQHKNLNQPNHG 1578
Query: 73 WDEWEEKMRQ------RKNGTAASTGTSTTTTTTTSTNVHTSDIQHLLPVVKE-VGTGGT 125
WE KM+Q ++ AA G P KE G T
Sbjct: 1579 LALWEAKMKQLAERARQRQEEAARLGLGQQEAKLYGKKRKWGGAMVAEPQHKEKKGAIPT 1638
Query: 126 RQIAKIPTHSTTTWTTLFPMHPCIVTGPY 154
RQ +PT S T ++ VTGPY
Sbjct: 1639 RQALAMPTDSAVTVSSYAYTK---VTGPY 1664
>sp|Q6N021|TET2_HUMAN Methylcytosine dioxygenase TET2 OS=Homo sapiens GN=TET2 PE=1 SV=3
Length = 2002
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%)
Query: 13 FQDSQMGGVAIALGHGSVLFECAKHELHATTALRRPNRLHPTRISLVFYQHRNLNRPKHG 72
F D +GGVA+A HGS+L ECAK ELHATT L+ PNR HPTRISLVFYQH+++N PKHG
Sbjct: 1854 FLDPDIGGVAVAPTHGSILIECAKRELHATTPLKNPNRNHPTRISLVFYQHKSMNEPKHG 1913
Query: 73 WDEWEEKM 80
WE KM
Sbjct: 1914 LALWEAKM 1921
>sp|Q8NFU7|TET1_HUMAN Methylcytosine dioxygenase TET1 OS=Homo sapiens GN=TET1 PE=1 SV=2
Length = 2136
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 76/147 (51%), Gaps = 20/147 (13%)
Query: 13 FQDSQMGGVAIALGHGSVLFECAKHELHATTALRRPNRLHPTRISLVFYQHRNLNRPKHG 72
F D+ +GGVAIA HGSVL ECA+ ELHATT + PNR HPTR+SLVFYQH+NLN+P+HG
Sbjct: 2001 FLDANIGGVAIAPAHGSVLIECARRELHATTPVEHPNRNHPTRLSLVFYQHKNLNKPQHG 2060
Query: 73 WDEWEEKMRQRKNGTAASTGTSTTTTTTTSTNVHTSDIQHLLPVVKEVGTGGTRQIAKIP 132
++ + K ++ + +S++ L +IP
Sbjct: 2061 FELNKIKFEAKEAKNKKMKASEQKDQAANEGPEQSSEVNEL---------------NQIP 2105
Query: 133 THSTTTWT-----TLFPMHPCIVTGPY 154
+H T T T+ P V GPY
Sbjct: 2106 SHKALTLTHDNVVTVSPYALTHVAGPY 2132
>sp|Q4JK59|TET2_MOUSE Methylcytosine dioxygenase TET2 OS=Mus musculus GN=Tet2 PE=1 SV=3
Length = 1912
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 13 FQDSQMGGVAIALGHGSVLFECAKHELHATTALRRPNRLHPTRISLVFYQHRNLNRPKHG 72
FQD +GGVAIA HGS+L ECAK E+HATT + P+R HPTRISLV Y+H+NL PKH
Sbjct: 1768 FQDPCIGGVAIAPTHGSILIECAKCEVHATTKVNDPDRNHPTRISLVLYRHKNLFLPKHC 1827
Query: 73 WDEWEEKM--RQRKNGTAASTGTS 94
WE KM + RK G+
Sbjct: 1828 LALWEAKMAEKARKEEECGKNGSD 1851
>sp|Q3URK3|TET1_MOUSE Methylcytosine dioxygenase TET1 OS=Mus musculus GN=Tet1 PE=1 SV=2
Length = 2007
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 48/62 (77%)
Query: 13 FQDSQMGGVAIALGHGSVLFECAKHELHATTALRRPNRLHPTRISLVFYQHRNLNRPKHG 72
+ D GGVAIA HGSVL ECA+ ELHATT+LR P R P R+SLVFYQH++LN+P HG
Sbjct: 1880 YADPSFGGVAIAPIHGSVLIECARKELHATTSLRSPKRGVPFRVSLVFYQHKSLNKPNHG 1939
Query: 73 WD 74
+D
Sbjct: 1940 FD 1941
>sp|Q06096|COG4_YEAST Conserved oligomeric Golgi complex subunit 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COG4 PE=1
SV=1
Length = 861
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 7/130 (5%)
Query: 27 HGSVLFEC--AKHELHATTALRRPNRLHPTRISLVFYQHRNLNRPKHGWDEWEEKMRQRK 84
H V+ C KH +H + + L + I +F + R + R H +EWE +
Sbjct: 285 HSKVIATCYGKKHMVHVMEKVEKEADLQASLILDIFMETRKIERTIHDINEWEHSQKNED 344
Query: 85 -NGTAASTGTSTTTTTTTSTNVHTSDIQHLLPVVKEVGTGGTRQIAKIPTHSTTTWTTLF 143
N + + T T S+ + D+ L+ ++ + + + W
Sbjct: 345 VNIDSNQSDIETDGETEKSSIISIHDLALLIMEFSQI----LQNWSMYSRFYSVKWNEFS 400
Query: 144 PMHPCIVTGP 153
+HP ++ P
Sbjct: 401 DLHPHVLQPP 410
>sp|P22413|ENPP1_HUMAN Ectonucleotide pyrophosphatase/phosphodiesterase family member 1
OS=Homo sapiens GN=ENPP1 PE=1 SV=2
Length = 925
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 71 HGWDEWEEKMRQRKNGTAASTGTSTTTTTTTSTNVHTSDIQH----LLPVVKEVGTGGTR 126
G W E+ + N G T T S + ++ H LLPV+ ++ GT
Sbjct: 185 QGEKSWVEEPCESINEPQCPAGFETPPTLLFSLDGFRAEYLHTWGGLLPVISKLKKCGTY 244
Query: 127 QIAKIPTHSTTTWTTLFPMHPCIVTGPYQES 157
P + T T FP H IVTG Y ES
Sbjct: 245 TKNMRPVYPTKT----FPNHYSIVTGLYPES 271
>sp|Q39128|KAT1_ARATH Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2
Length = 677
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 63 HRNLNRPKHGWDEWEEKMRQRKNGTAASTGTSTTTTTTTSTNVHTSDIQHLLPVVKEVGT 122
H N + GW+EW + RK+G T+ T+ T +H D + + ++KE
Sbjct: 513 HENRDFKSMGWEEWRD---SRKDGYGLDV-TNPTSDTALMDAIHKEDTEMVKKILKEQKI 568
Query: 123 GGTRQIAKIPTHSTTTWTTLFPMHPCIVTGPYQESSNSTAPP 164
+ AK+ S+ T + + PY SSN P
Sbjct: 569 ----ERAKVERSSSETAGRSYA-NDSSKKDPYCSSSNQIIKP 605
>sp|Q0E7J7|STN1_SCHPO Protein stn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=stn1 PE=1 SV=1
Length = 325
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
Query: 7 LGPAFYFQDS-QMGGVAIALGHGSVLFECAKHELHATTALRRPNRLHPTRISLVFYQHRN 65
L F QD M AI++ G+V+ C ++++ + + L+
Sbjct: 78 LRVVFIIQDDFSMSKRAISMSPGNVV--CVFGKINSFR----------SEVELIAQSFEE 125
Query: 66 LNRPKHGWDEWEEKMRQRKNGTAASTGTSTTTTTTTSTNVHTSDIQHLLPVVKEV 120
L P W W+++MR +KN T S + T + + LL ++++
Sbjct: 126 LRDPNDEWKAWQKRMRYKKNLTKISKNHHSIIRTPKKSYFPKDHAKELLKCIRQM 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,509,869
Number of Sequences: 539616
Number of extensions: 2547988
Number of successful extensions: 21982
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 17180
Number of HSP's gapped (non-prelim): 3162
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)