Query psy6124
Match_columns 171
No_of_seqs 45 out of 47
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 18:15:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3q_A Alpha-ketoglutarate-dep 64.3 6.3 0.00021 31.4 3.8 41 20-63 155-202 (211)
2 3s57_A Alpha-ketoglutarate-dep 62.8 5 0.00017 31.3 2.9 39 20-61 159-200 (204)
3 2iuw_A Alkylated repair protei 49.6 12 0.0004 29.8 3.1 42 19-64 185-230 (238)
4 3hzb_A Flavollin, carbohydrate 45.2 24 0.00083 23.7 3.7 55 9-69 2-60 (90)
5 3v6i_A V-type ATP synthase sub 23.8 45 0.0016 25.0 2.4 21 16-36 146-166 (187)
6 3qh6_A CT296; iron, modeling; 22.4 16 0.00054 29.4 -0.4 9 25-33 16-24 (157)
7 4efa_E V-type proton ATPase su 20.7 56 0.0019 25.4 2.5 20 16-35 183-202 (233)
8 2lkw_A Membrane fusion protein 17.2 48 0.0017 19.6 1.0 13 158-170 5-17 (26)
9 3tht_A Alkylated DNA repair pr 16.0 73 0.0025 27.1 2.3 13 20-32 245-257 (345)
10 2dm9_A V-type ATP synthase sub 14.2 1.1E+02 0.0036 22.0 2.5 21 16-36 157-177 (198)
No 1
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=64.31 E-value=6.3 Score=31.35 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=29.0
Q ss_pred eeEEeccCcceee---eecccchhccccccCCCCCCC----ceEEEEEeee
Q psy6124 20 GVAIALGHGSVLF---ECAKHELHATTALRRPNRLHP----TRISLVFYQH 63 (171)
Q Consensus 20 GVaiA~~HGSvLi---ECak~ElHATT~~~~PnR~~P----tRisLVFyQH 63 (171)
-+.|-|.|||+|| +| +...|+--+.+... +| .||||.|=+-
T Consensus 155 ~~~i~L~~GsllvM~G~~-r~~~H~I~~~~~~~--~p~~~~~RIsLTFR~~ 202 (211)
T 3i3q_A 155 LKRLLLEHGDVVVWGGES-RLFYHGIQPLKAGF--HPLTIDCRYNLTFRQA 202 (211)
T ss_dssp CEEEEECTTCEEEECGGG-TTCCEEECCCCCCC--BTTTBTCEEEEEEECC
T ss_pred eEEEECCCCCEEEECchH-HceEeccCcccCCc--CCCCCCCEEEEEeeec
Confidence 4579999999998 44 34568776665432 33 7999999543
No 2
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=62.83 E-value=5 Score=31.32 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=27.4
Q ss_pred eeEEeccCcceee---eecccchhccccccCCCCCCCceEEEEEe
Q psy6124 20 GVAIALGHGSVLF---ECAKHELHATTALRRPNRLHPTRISLVFY 61 (171)
Q Consensus 20 GVaiA~~HGSvLi---ECak~ElHATT~~~~PnR~~PtRisLVFy 61 (171)
-+.|-|.|||+|| +|-.+=.|+--..+++ .--||||.|=
T Consensus 159 ~~~~~L~~GsllvM~g~~q~~w~H~Ip~~~~~---~~~RislTFR 200 (204)
T 3s57_A 159 VVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKV---LAPRVNLTFR 200 (204)
T ss_dssp CEEEEECTTEEEEEETTHHHHEEEEECCCTTC---CSCEEEEEEE
T ss_pred eEEEECCCCCEEEECchhhheeEeeccccCCC---CCCEEEEEee
Confidence 4789999999997 4433346776555543 3479999993
No 3
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=49.61 E-value=12 Score=29.81 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=28.5
Q ss_pred ceeEEeccCcceee---eecccc-hhccccccCCCCCCCceEEEEEeeec
Q psy6124 19 GGVAIALGHGSVLF---ECAKHE-LHATTALRRPNRLHPTRISLVFYQHR 64 (171)
Q Consensus 19 GGVaiA~~HGSvLi---ECak~E-lHATT~~~~PnR~~PtRisLVFyQHk 64 (171)
+-+.|-|.|||+|| || +.+ .|+--+.+. ..-.||||.|=+-+
T Consensus 185 ~~~~i~L~~gsllvM~G~~-r~~w~H~I~~~~~---~~~~RIsLTfR~v~ 230 (238)
T 2iuw_A 185 ERVKIPLDHGTLLIMEGAT-QADWQHRVPKEYH---SREPRVNLTFRTVY 230 (238)
T ss_dssp CEEEEEECTTCEEEEEETH-HHHEEEEECCCSS---CCCCEEEEEEECCC
T ss_pred ceEEEEcCCCCEEEEChhh-hCccEecCCCcCC---CCCCEEEEEeeecc
Confidence 35789999999997 33 233 577655433 23489999996543
No 4
>3hzb_A Flavollin, carbohydrate binding protein; calcium-bound betagamma-crystallin, metal binding protein; 1.74A {Flavobacterium johnsoniae} SCOP: b.11.1.0
Probab=45.22 E-value=24 Score=23.66 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=38.0
Q ss_pred CccccccCCCceeEEeccCcceeeeecccchhccccccCCCCCCCceEE----EEEeeeccCCCC
Q psy6124 9 PAFYFQDSQMGGVAIALGHGSVLFECAKHELHATTALRRPNRLHPTRIS----LVFYQHRNLNRP 69 (171)
Q Consensus 9 ~e~~F~d~~iGGVaiA~~HGSvLiECak~ElHATT~~~~PnR~~PtRis----LVFyQHknLn~p 69 (171)
-.-.|.|++.+|-.+.+..| ||..-++++-.- .-||-.=.|+. +++|.|.|..-.
T Consensus 2 ~v~~Ye~~nf~G~~~~l~~g----~y~~~d~~~~~~--~nd~isS~rv~~g~~v~lYe~~nf~G~ 60 (90)
T 3hzb_A 2 VITVYKDCNYTGFSGGLTIG----DYNLARLNSLGV--LNDDISSLRITQGYQAILYQDDNFGGA 60 (90)
T ss_dssp CEEEEEETTTEEEEEEECSE----EECHHHHHHTTC--CTTCCCEEEECTTCEEEEEEEGGGEEE
T ss_pred eEEEEcCCCCcceeEEEcCC----ccchHHHHhccC--CCCccEEEEECCCCEEEEEeCCCCcce
Confidence 34579999999999999998 565556665321 13444445554 899999997543
No 5
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=23.80 E-value=45 Score=24.98 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=17.8
Q ss_pred CCCceeEEeccCcceeeeecc
Q psy6124 16 SQMGGVAIALGHGSVLFECAK 36 (171)
Q Consensus 16 ~~iGGVaiA~~HGSvLiECak 36 (171)
..+|||.+.-.-|.|.|.|.-
T Consensus 146 ~~~GGvil~~~dG~I~vdnTl 166 (187)
T 3v6i_A 146 ALRLGVRAVGAEGKTQVENSL 166 (187)
T ss_dssp TCCSEEEEECTTSSCEEEEEH
T ss_pred cccCceEEEeCCCCEEEECCH
Confidence 357999999999999998853
No 6
>3qh6_A CT296; iron, modeling; HET: PG4; 1.80A {Chlamydia trachomatis} PDB: 3qh7_A
Probab=22.42 E-value=16 Score=29.37 Aligned_cols=9 Identities=56% Similarity=1.069 Sum_probs=7.7
Q ss_pred ccCcceeee
Q psy6124 25 LGHGSVLFE 33 (171)
Q Consensus 25 ~~HGSvLiE 33 (171)
++|||||||
T Consensus 16 qNhGsILFE 24 (157)
T 3qh6_A 16 QNHGHILFE 24 (157)
T ss_dssp HHHSEEEET
T ss_pred hccCceeec
Confidence 479999998
No 7
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=20.69 E-value=56 Score=25.40 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=17.1
Q ss_pred CCCceeEEeccCcceeeeec
Q psy6124 16 SQMGGVAIALGHGSVLFECA 35 (171)
Q Consensus 16 ~~iGGVaiA~~HGSvLiECa 35 (171)
.++|||.|.-.-|.|.|.|.
T Consensus 183 ~~~GGvil~s~dGkI~vdNT 202 (233)
T 4efa_E 183 LVSGGVVVSNASDKIEINNT 202 (233)
T ss_dssp TCSSEEEEECTTSCCEEEEE
T ss_pred cccCceEEEECCCCEEEECC
Confidence 36799999999999988764
No 8
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=17.15 E-value=48 Score=19.58 Aligned_cols=13 Identities=46% Similarity=0.920 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCC
Q psy6124 158 SNSTAPPAPPANP 170 (171)
Q Consensus 158 ~~s~~~~~~~~~~ 170 (171)
-|+-.|||||.|.
T Consensus 5 hsivqppapppna 17 (26)
T 2lkw_A 5 HSIVQPPAPPPNA 17 (26)
T ss_pred cccccCCCcCCCe
Confidence 3566788888773
No 9
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=16.02 E-value=73 Score=27.05 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=11.4
Q ss_pred eeEEeccCcceee
Q psy6124 20 GVAIALGHGSVLF 32 (171)
Q Consensus 20 GVaiA~~HGSvLi 32 (171)
-+.|-|.|||+||
T Consensus 245 ~~~l~L~~gsLlv 257 (345)
T 3tht_A 245 AVPVMLPRRSLLV 257 (345)
T ss_dssp EEEEEECTTEEEE
T ss_pred eEEEEcCCCcEEE
Confidence 4689999999997
No 10
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=14.22 E-value=1.1e+02 Score=22.03 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=17.7
Q ss_pred CCCceeEEeccCcceeeeecc
Q psy6124 16 SQMGGVAIALGHGSVLFECAK 36 (171)
Q Consensus 16 ~~iGGVaiA~~HGSvLiECak 36 (171)
...|||.|.-..|.|.|.|.-
T Consensus 157 ~~~GG~~i~~~~G~i~id~tl 177 (198)
T 2dm9_A 157 DTMGGVIVETEDGRIRIDNTF 177 (198)
T ss_dssp CCSSEEEEEETTSSCEEEEEH
T ss_pred CccCceEEEeCCCCEEEECcH
Confidence 367999999999999988754
Done!