Query psy6124
Match_columns 171
No_of_seqs 45 out of 47
Neff 2.3
Searched_HMMs 13730
Date Fri Aug 16 18:15:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6124.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6124hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1odma_ b.82.2.1 (A:) Isopenic 60.5 4.6 0.00034 30.0 4.3 48 19-69 236-291 (329)
2 d2iuwa1 b.82.2.10 (A:70-279) A 59.7 3 0.00022 29.4 2.9 39 20-61 165-206 (210)
3 d2fdia1 b.82.2.10 (A:15-214) A 45.1 11 0.00082 27.5 4.2 42 21-62 152-197 (200)
4 d2zjra2 b.40.4.5 (A:33-127) N- 28.2 14 0.001 25.3 2.1 16 46-63 52-67 (95)
5 d1e3ha2 d.14.1.4 (A:3-151) Pol 26.6 20 0.0014 24.8 2.7 44 23-66 27-73 (149)
6 d2j01d2 b.40.4.5 (D:2-126) N-t 25.2 17 0.0012 26.1 2.1 16 46-63 83-98 (125)
7 d2qamc2 b.40.4.5 (C:61-124) N- 23.2 5.5 0.0004 25.8 -0.9 15 46-62 22-36 (64)
8 d1gp6a_ b.82.2.1 (A:) Anthocya 18.4 73 0.0053 23.2 4.6 46 19-67 255-309 (349)
9 d1rl2a2 b.40.4.5 (A:60-125) N- 18.2 18 0.0013 23.3 0.9 14 47-62 24-37 (66)
10 d2dm9a1 d.81.4.1 (A:81-198) V- 16.7 40 0.0029 21.8 2.5 21 16-36 77-97 (118)
No 1
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]}
Probab=60.50 E-value=4.6 Score=30.03 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=34.8
Q ss_pred ceeEEeccCcceeeeecc-------cchhccc-cccCCCCCCCceEEEEEeeeccCCCC
Q psy6124 19 GGVAIALGHGSVLFECAK-------HELHATT-ALRRPNRLHPTRISLVFYQHRNLNRP 69 (171)
Q Consensus 19 GGVaiA~~HGSvLiECak-------~ElHATT-~~~~PnR~~PtRisLVFyQHknLn~p 69 (171)
||+-|.+.-|+++|=+.- ..+.||- -|..|++ -|+|++||.|.|++.-
T Consensus 236 ~W~~v~~~~~~~vVN~Gd~l~~~Tng~~kst~HRV~~~~~---~R~Si~~F~~P~~d~~ 291 (329)
T d1odma_ 236 GYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA---ERQSLPFFVNLGYDSV 291 (329)
T ss_dssp EEEECCCCTTSEEEEECHHHHHHTTTSSCCCCEEEECCCS---CEEEEEEEECCCTTCB
T ss_pred CceeeccccceEEEehhhhHHHHhCCEecCCCceecCCCC---CEEEEEEEECCCCCCE
Confidence 689899999999886653 3444443 3445665 4999999999988753
No 2
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.66 E-value=3 Score=29.44 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=24.2
Q ss_pred eeEEeccCcceeee---ecccchhccccccCCCCCCCceEEEEEe
Q psy6124 20 GVAIALGHGSVLFE---CAKHELHATTALRRPNRLHPTRISLVFY 61 (171)
Q Consensus 20 GVaiA~~HGSvLiE---Cak~ElHATT~~~~PnR~~PtRisLVFy 61 (171)
-+.|-|.|||+||= |-..=.|+.-..+.. + -.||||+|=
T Consensus 165 ~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~~-~--~~RiSlTfR 206 (210)
T d2iuwa1 165 RVKIPLDHGTLLIMEGATQADWQHRVPKEYHS-R--EPRVNLTFR 206 (210)
T ss_dssp EEEEEECTTCEEEEEETHHHHEEEEECCCSSC-C--CCEEEEEEE
T ss_pred eEEEEcCCCCEEEeCchhhCceEccCCccCCC-C--CCeEEEEEE
Confidence 36788999999973 222224776332221 2 269999994
No 3
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}
Probab=45.10 E-value=11 Score=27.47 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=28.0
Q ss_pred eEEeccCcceeee--ecccchhccccccCCC--CCCCceEEEEEee
Q psy6124 21 VAIALGHGSVLFE--CAKHELHATTALRRPN--RLHPTRISLVFYQ 62 (171)
Q Consensus 21 VaiA~~HGSvLiE--Cak~ElHATT~~~~Pn--R~~PtRisLVFyQ 62 (171)
+.|-|.|||+||= .++...|+--+++.-. ..-..||||.|=|
T Consensus 152 ~~~~L~~Gdllvm~G~~r~~~H~V~~~~~~~~~~~~~~RislTfR~ 197 (200)
T d2fdia1 152 KRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQ 197 (200)
T ss_dssp EEEEECTTCEEEECGGGGGCCEEECCCCCCCBTTTBTCEEEEEEEC
T ss_pred EEEEcCCCCEEEeCcchhheEecCCcccCCCCCCCCCCeEEEEEEe
Confidence 5788999999982 2455668876665311 1113699999954
No 4
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]}
Probab=28.19 E-value=14 Score=25.34 Aligned_cols=16 Identities=44% Similarity=0.750 Sum_probs=14.2
Q ss_pred cCCCCCCCceEEEEEeee
Q psy6124 46 RRPNRLHPTRISLVFYQH 63 (171)
Q Consensus 46 ~~PnR~~PtRisLVFyQH 63 (171)
-.|||+ -+|.||+|..
T Consensus 52 YDPnRS--a~IALv~y~d 67 (95)
T d2zjra2 52 YDPNRS--ARIALLHYAD 67 (95)
T ss_dssp CCTTTS--SCEEEEEETT
T ss_pred EcCCCC--EEEEEEEcCC
Confidence 489999 9999999975
No 5
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]}
Probab=26.64 E-value=20 Score=24.85 Aligned_cols=44 Identities=20% Similarity=0.084 Sum_probs=24.6
Q ss_pred Ee-ccCcceeeeecccchhc--cccccCCCCCCCceEEEEEeeeccC
Q psy6124 23 IA-LGHGSVLFECAKHELHA--TTALRRPNRLHPTRISLVFYQHRNL 66 (171)
Q Consensus 23 iA-~~HGSvLiECak~ElHA--TT~~~~PnR~~PtRisLVFyQHknL 66 (171)
+| +.|||+||||----+-+ +.+-..|......---.|+|+=|..
T Consensus 27 lakqA~GSalv~~G~T~vl~ta~~~~~~~~~~~~~~~~~v~~~~~~~ 73 (149)
T d1e3ha2 27 LARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMY 73 (149)
T ss_dssp SCTTSSEEEEEEETTTEEEEEEEEECSSCCTTCSSCCEEEEEEECGG
T ss_pred ccccCCceEEEEECCcEEEEEeeecccccccccccCCceeEEEEecc
Confidence 56 58999999985544443 3344455544333334445554433
No 6
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]}
Probab=25.23 E-value=17 Score=26.13 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=14.2
Q ss_pred cCCCCCCCceEEEEEeee
Q psy6124 46 RRPNRLHPTRISLVFYQH 63 (171)
Q Consensus 46 ~~PnR~~PtRisLVFyQH 63 (171)
-.|||+ .+|.||+|..
T Consensus 83 YDPnRs--a~IALv~y~d 98 (125)
T d2j01d2 83 YDPNRS--ARIALLHYVD 98 (125)
T ss_dssp CCTTCS--SCEEEEEETT
T ss_pred ecCCCc--eEEEEEEeCC
Confidence 489999 9999999965
No 7
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]}
Probab=23.23 E-value=5.5 Score=25.77 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=13.2
Q ss_pred cCCCCCCCceEEEEEee
Q psy6124 46 RRPNRLHPTRISLVFYQ 62 (171)
Q Consensus 46 ~~PnR~~PtRisLVFyQ 62 (171)
-.|||+ .+|.||.|.
T Consensus 22 YDPnRs--A~IALv~y~ 36 (64)
T d2qamc2 22 YDPNRS--ANIALVLYK 36 (64)
T ss_dssp CCSSSS--SCCBCCCBT
T ss_pred eCCCCC--ceEEEEEcC
Confidence 479999 999999985
No 8
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.37 E-value=73 Score=23.23 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=29.6
Q ss_pred ceeEEeccCcceeeeec-------ccchhcccc--ccCCCCCCCceEEEEEeeeccCC
Q psy6124 19 GGVAIALGHGSVLFECA-------KHELHATTA--LRRPNRLHPTRISLVFYQHRNLN 67 (171)
Q Consensus 19 GGVaiA~~HGSvLiECa-------k~ElHATT~--~~~PnR~~PtRisLVFyQHknLn 67 (171)
+|+-|-+.=|+++|=+. -..++||.= +.++++ .|+||+||.|.+.+
T Consensus 255 ~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~---~R~Si~~F~~p~~d 309 (349)
T d1gp6a_ 255 KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEK---VRISWAVFCEPPKD 309 (349)
T ss_dssp EEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSC---CEEEEEEEEECCTT
T ss_pred ceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCC---CeEEEEEEecCCCc
Confidence 56666677777776543 233344331 334444 69999999999887
No 9
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.15 E-value=18 Score=23.28 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=12.9
Q ss_pred CCCCCCCceEEEEEee
Q psy6124 47 RPNRLHPTRISLVFYQ 62 (171)
Q Consensus 47 ~PnR~~PtRisLVFyQ 62 (171)
.|||+ .+|.||.|.
T Consensus 24 DPnRs--a~IAlv~y~ 37 (66)
T d1rl2a2 24 DPNRS--ANIALINYA 37 (66)
T ss_dssp EGGGT--EEEEEEEET
T ss_pred CCCCC--eEEEEEEcC
Confidence 69999 999999986
No 10
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}
Probab=16.71 E-value=40 Score=21.77 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.3
Q ss_pred CCCceeEEeccCcceeeeecc
Q psy6124 16 SQMGGVAIALGHGSVLFECAK 36 (171)
Q Consensus 16 ~~iGGVaiA~~HGSvLiECak 36 (171)
..+|||.+.-.-|+|.++|.-
T Consensus 77 ~~~GGvil~s~dG~I~vdnTl 97 (118)
T d2dm9a1 77 DTMGGVIVETEDGRIRIDNTF 97 (118)
T ss_dssp CCSSEEEEEETTSSCEEEEEH
T ss_pred ccCCCEEEEecCCCEEEECcH
Confidence 478999999999999999864
Done!