RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6124
         (171 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.16
 Identities = 25/181 (13%), Positives = 49/181 (27%), Gaps = 59/181 (32%)

Query: 1   MFTLTGLGPAFYF-----------QDSQMGGVAIALGHGSVLFECAKHELHATTALRRPN 49
           M +++ L                    Q   V I+L +G+     +            P 
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQ---VEISLVNGAKNLVVSGP----------PQ 384

Query: 50  RLHPTRISLVFYQHRNLNRPKHGWDEWEEKMRQRKNGTAASTGTSTTTTT--TTSTNVHT 107
            L+   ++L     R    P  G D+      +RK            +      ++  H+
Sbjct: 385 SLYGLNLTL-----RKAKAP-SGLDQSRIPFSERK---------LKFSNRFLPVASPFHS 429

Query: 108 SDIQHLLPVVKEVGTGGTRQIA-------KIPTHSTTTW-------TTLFPMH-PCIVTG 152
                L+P    +     +          +IP + T           ++      CI+  
Sbjct: 430 H---LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486

Query: 153 P 153
           P
Sbjct: 487 P 487


>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
           biostructures, structu genomics; 2.20A {Mycobacterium
           avium}
          Length = 407

 Score = 27.1 bits (61), Expect = 3.0
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 6/29 (20%)

Query: 19  GGVAIALGH-----GSVLFECAKHELHAT 42
           GG AIA+GH     G+++      EL   
Sbjct: 356 GG-AIAMGHPLGATGAMITGTMVDELERR 383


>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
          Length = 332

 Score = 26.4 bits (59), Expect = 4.6
 Identities = 8/47 (17%), Positives = 20/47 (42%)

Query: 86  GTAASTGTSTTTTTTTSTNVHTSDIQHLLPVVKEVGTGGTRQIAKIP 132
           GT A +G   +  +  S  +   ++   +P + ++      Q++ I 
Sbjct: 15  GTIAGSGVDASLGSYKSGELGVKELLKAIPSLNKIARIQGEQVSNIG 61


>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside
           hydrolase, transferase; 1.77A {Bifidobacterium
           adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A*
           2gdu_A*
          Length = 504

 Score = 26.3 bits (58), Expect = 6.3
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 64  RNLNRPKHGWDEWEEKMRQR 83
           R++NR  +   E +E +++ 
Sbjct: 399 RDINRHYYSTAEIDENLKRP 418


>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A
           {Wolinella succinogenes} SCOP: c.88.1.1
          Length = 330

 Score = 25.6 bits (57), Expect = 8.4
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 86  GTAASTGTSTTTTTTTSTNVHTSDIQHLLPVVKEVGTGGTRQIAKIP 132
           GT A +G S+  ++ ++  V    +   +P + ++ T    QI+ I 
Sbjct: 13  GTIAGSGESSVKSSYSAGAVTVDKLLAAVPAINDLATIKGEQISSIG 59


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.129    0.402 

Gapped
Lambda     K      H
   0.267   0.0815    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,537,994
Number of extensions: 130271
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 13
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.4 bits)