RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6124
         (171 letters)



>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus
          subtilis [TaxId: 1423]}
          Length = 151

 Score = 26.0 bits (56), Expect = 1.7
 Identities = 6/60 (10%), Positives = 14/60 (23%), Gaps = 3/60 (5%)

Query: 27 HGSVLFECAKHELHATTALRRPNRLHPTRISLVFYQHRNLNRPKHGWDEWEEKMRQRKNG 86
           GSVL      ++             P  +                    ++ +++   G
Sbjct: 25 EGSVLITAGNTKVICNA---SVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSKG 81


>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex
          aeolicus [TaxId: 63363]}
          Length = 149

 Score = 26.0 bits (56), Expect = 1.9
 Identities = 5/39 (12%), Positives = 10/39 (25%)

Query: 27 HGSVLFECAKHELHATTALRRPNRLHPTRISLVFYQHRN 65
           GS L    K ++  T ++              +     
Sbjct: 24 EGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEY 62


>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide),
          N-terminal domain {Bacillus thuringiensis subsp.
          kurstaki, CRY2AA [TaxId: 29339]}
          Length = 263

 Score = 24.5 bits (53), Expect = 8.0
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 61 YQHRNLNRPKHGWDEWEEKMRQRKNGTAASTGTST 95
          ++H++L+  +  W EW+             T +S 
Sbjct: 26 FEHKSLDTIQKEWMEWKRTDHSLYVAPVVGTVSSF 60


>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium
           adolescentis [TaxId: 1680]}
          Length = 434

 Score = 24.7 bits (52), Expect = 8.6
 Identities = 5/22 (22%), Positives = 12/22 (54%)

Query: 62  QHRNLNRPKHGWDEWEEKMRQR 83
             R++NR  +   E +E +++ 
Sbjct: 397 NGRDINRHYYSTAEIDENLKRP 418


>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 210

 Score = 24.1 bits (51), Expect = 9.5
 Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 6/43 (13%)

Query: 21  VAIALGHGSVLF---ECAKHELHATTALRRPNRLHPTRISLVF 60
           V I L HG++L           H              R++L F
Sbjct: 166 VKIPLDHGTLLIMEGATQADWQHRVPKEYHSRE---PRVNLTF 205


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.402 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 625,238
Number of extensions: 25027
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 7
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.7 bits)