BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6125
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 53 INSKYSEELAQECLEWIREITGENID-TSGNMDNFYEILKDGTLLCKLVNDLKPN---SV 108
I +Y +L Q ++WI +++ +NF LKDGT+LC+L+N L P V
Sbjct: 10 IEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPV 69
Query: 109 KKINVSTMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLG 164
KKI STMAFK ME I+ FL A G+ + FQTVDLWE +N+ V L +LG
Sbjct: 70 KKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLG 125
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 56 KYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVST 115
KY + QE EWI +TG I +NF + LKDG +LC+ +N L+P SVKKIN ST
Sbjct: 13 KYDHQREQELREWIEGVTGRRIG-----NNFMDGLKDGIILCEFINKLQPGSVKKINEST 67
Query: 116 MAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFN 175
+ +ENI F+ + GV + F+ DL+E N V L +L A N
Sbjct: 68 QNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKGNKVN 127
Query: 176 L 176
+
Sbjct: 128 V 128
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 55 SKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVS 114
SKY + E WI +TG +I +F + LKDGT+LC L+N L+P SV KIN S
Sbjct: 12 SKYDPQKEAELRTWIEGLTGLSIGP-----DFQKGLKDGTILCTLMNKLQPGSVPKINRS 66
Query: 115 TMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167
+ +EN++ F+ G+ + F+ DL+E N+ V + L +L KA
Sbjct: 67 MQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKA 119
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 68 WIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCF 127
WI TG I DNF + LKDG +LC+L+N L+P SV+K+N + +ENI F
Sbjct: 11 WIEGATGRRIG-----DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNF 65
Query: 128 LDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167
L + GV + F+ DL+E N V L +L +A
Sbjct: 66 LRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQA 105
>pdb|1UJO|A Chain A, Solution Structure Of The Ch Domain From Mouse Trangelin
Length = 144
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 59 EELAQECLEWIREITGENIDTSGNMD----NFYEILKDGTLLCKLVNDLKPNSVKKINVS 114
EEL + +EWI G ++ G D F LK+G +L KLVN L P K + V
Sbjct: 8 EELEERLVEWIVVQCGPDV---GRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVP 64
Query: 115 ----TMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167
+M FK ME + FL A + GV + FQTVDL+E +++ +V L +LG A
Sbjct: 65 ENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLA 121
>pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain Of
An Iqgap Protein From Schizosaccharomyces Pombe
Length = 203
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 64 ECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVST-MAFKCME 122
E +WI E G ++ G F + L++G +L LV +P+ + KI S + F+ +
Sbjct: 59 EAKKWIEECLGTDL---GPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 115
Query: 123 NINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSL 163
NIN FLD +G+P F+ D++E +NL V+ C+ +L
Sbjct: 116 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 156
>pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of Rng2
From Schizosaccharomyces Pombe
Length = 159
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVST-MAFKC 120
E +WI E G ++ G F + L++G +L LV +P+ + KI S + F+
Sbjct: 13 VDEAKKWIEECLGTDL---GPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRH 69
Query: 121 MENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASI 169
+NIN FLD +G+P F+ D++E +NL V+ C+ +L S+
Sbjct: 70 SDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSM 118
>pdb|2D86|A Chain A, Solution Structure Of The Ch Domain From Human Vav-3
Protein
Length = 143
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 80 SGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKINVSTMA--FKCMENINCFLDVARE-M 134
S + + + L+DG LLC+L+N+L+ +S+ K+IN+ F C++NI FL E
Sbjct: 34 SAQVFDLAQTLRDGVLLCQLLNNLRAHSINLKEINLRPQMSQFLCLKNIRTFLTACCETF 93
Query: 135 GVPAQETFQTVDLWERQNLNSVVICLQSLGR 165
G+ E F+ DL++ ++ V+ L L R
Sbjct: 94 GMRKSELFEAFDLFDVRDFGKVIETLSRLSR 124
>pdb|2RR8|A Chain A, Solution Structure Of Calponin Homology Domain Of Iqgap1
Length = 190
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 63 QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPN--SVKKI--------N 112
+E W+ GE++ + ++ E L++G L KL N P S+KKI
Sbjct: 28 EEAKRWMEACLGEDLPPTTELE---EGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYK 84
Query: 113 VSTMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSL 163
+ + F+ +N+ +L+ E+G+P +T D+++R+N+ + C+ +L
Sbjct: 85 ATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHAL 135
>pdb|3I6X|A Chain A, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|B Chain B, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|C Chain C, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|D Chain D, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
Length = 193
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 63 QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPN--SVKKI--------N 112
+E W+ GE++ + ++ E L++G L KL N P S+KKI
Sbjct: 50 EEAKRWMEACLGEDLPPTTELE---EGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYK 106
Query: 113 VSTMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSL 163
+ + F+ +N+ +L+ E+G+P +T D+++R+N+ + C+ +L
Sbjct: 107 ATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHAL 157
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 90 LKDGTLLCKLVNDLKPNSVKKINVSTMA-FKCMENINCFLDVAREMGVPAQ-ETFQTVDL 147
LKDG +LC+L+ L P +++K+ + +C+ NI FL R G + ETF DL
Sbjct: 45 LKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFL---RGCGASLRLETFDANDL 101
Query: 148 WERQNLNSVVICLQSLGR 165
++ QN N V+ L +L +
Sbjct: 102 YQGQNFNKVLSSLVTLNK 119
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 90 LKDGTLLCKLVNDLKPNSVKKINVSTMA-FKCMENINCFLDVAREMGVPAQETFQTVDLW 148
LK+G +LCKL+N L P SV+K + C+ NIN FL + V E F DL+
Sbjct: 39 LKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQV---EIFDPDDLY 95
Query: 149 ERQNLNSVVICLQSLGR 165
N + V+ L ++ +
Sbjct: 96 SGVNFSKVLSTLLAVNK 112
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Schizosaccharomyces Pombe Fimbrin
Length = 513
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 86 FYEILKDGTLLCKLVNDLKPNSV-------KKINVSTMAFKCMENINCFLDVAREMG 135
F++ KDG +L KL+ND P+++ ++ N FKC+EN N ++ A+ MG
Sbjct: 44 FFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 100
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 20/109 (18%)
Query: 76 NIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKINVST------MAFKCMENINCF 127
++D + ++ +F+ L+DG +L + + + PN+V KK+N + M FK +EN N
Sbjct: 296 SLDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYA 355
Query: 128 LDVAREMGVP-----------AQETFQTVDLWERQNLNSVVICLQSLGR 165
+D+ + G T +W+ +N + L SL R
Sbjct: 356 VDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMN-ITKTLHSLSR 403
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin
Length = 275
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 57 YSEELAQECLEWIREITGENID------TSGNMDNFYEILKDGTLLCKLVNDLKPNSV-- 108
YSEE + WI + + D + N D+ ++ + DG +LCK++N P+++
Sbjct: 21 YSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDE 80
Query: 109 KKINVSTM-AFKCMENINCFLDVAREMG 135
+ IN + F EN+N L+ A +G
Sbjct: 81 RAINKKKLTPFIIQENLNLALNSASAIG 108
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 57 YSEELAQECLEWI---REITGENIDT--SGNMDNFYEILKDGTLLCKLVNDLKPNSV--K 109
+ +EL ++C W+ R + + T + + L+DG LLC+L+N+L P+++ +
Sbjct: 2 HMKELWRQCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLR 61
Query: 110 KINVSTM--AFKCMENINCFLDVARE-MGVPAQETFQTVDLWERQNLNSVVICLQSLG 164
++N+ F C++NI FL E G+ E F+ DL++ Q+ V+ L +L
Sbjct: 62 EVNLRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQDFGKVIYTLSALS 119
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 84 DNFYEILKDGTLLCKLVNDLKPNSVKKINVST 115
+ YE++KDG LLCKL+N P ++ + ++T
Sbjct: 37 NQLYELVKDGVLLCKLINVAVPGTIDERAINT 68
>pdb|2B4K|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B9V|A Chain A, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|B Chain B, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|C Chain C, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|D Chain D, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|E Chain E, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|F Chain F, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|G Chain G, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|H Chain H, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|I Chain I, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|J Chain J, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|K Chain K, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|L Chain L, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|M Chain M, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|N Chain N, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|O Chain O, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|P Chain P, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
Length = 652
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 147 LWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEADKNVRH 206
LW+++++ + Q+L + A + + N + W SG NY ++GP E + + H
Sbjct: 296 LWDQEDMWGAIHAWQAL-KDADVKAPN---TLVMGPWRHSGVNYNGSTLGPLEFEGDTAH 351
Query: 207 ---------FTEEQLKAGQTVISL 221
F +E LK G + L
Sbjct: 352 QYRRDVFRPFFDEYLKPGSASVHL 375
>pdb|1NX9|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
Length = 652
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 147 LWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEADKNVRH 206
LW+++++ + Q+L + A + + N + W SG NY ++GP E + + H
Sbjct: 296 LWDQEDMWGAIHAWQAL-KDADVKAPN---TLVMGPWRHSGVNYNGSTLGPLEFEGDTAH 351
Query: 207 ---------FTEEQLKAGQTVISL 221
F +E LK G + L
Sbjct: 352 QYRRDVFRPFFDEYLKPGSASVHL 375
>pdb|1RYY|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|E Chain E, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|F Chain F, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|G Chain G, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|H Chain H, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
Length = 652
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 147 LWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEADKNVRH 206
LW+++++ + Q+L + A + + N + W SG NY ++GP E + + H
Sbjct: 296 LWDQEDMWGAIHAWQAL-KDADVKAPN---TLVMGPWRHSGVNYNGSTLGPLEFEGDTAH 351
Query: 207 ---------FTEEQLKAGQTVISL 221
F +E LK G + L
Sbjct: 352 QYRRDVFRPFFDEYLKPGSASVHL 375
>pdb|1MO0|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Triose
Phosphate Isomerase
pdb|1MO0|B Chain B, Structural Genomics Of Caenorhabditis Elegans: Triose
Phosphate Isomerase
Length = 275
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 14/77 (18%)
Query: 58 SEELAQECLEWIREITGENIDT------------SGNMDNFYEILKDGTLLCKLVN--DL 103
S E AQE EWIR E + S DN E+ K + LV L
Sbjct: 196 SGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASL 255
Query: 104 KPNSVKKINVSTMAFKC 120
KP+ VK IN + A C
Sbjct: 256 KPDFVKIINARSTALSC 272
>pdb|2AMY|A Chain A, X-Ray Structure Of Human Phosphomannomutase 2 (Pmm2)
pdb|2Q4R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Human Phosphomannomutase 2 (Pmm2)
Length = 246
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 43 KDGTLLCKTTINSKYSEELAQE----CLEWIREI 72
KDG LLC+ I S E L Q+ CL +I +I
Sbjct: 77 KDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKI 110
>pdb|3EQT|A Chain A, Crystal Structure Of Human Lgp2 C-Terminal Domain In
Complex With Dsrna
pdb|3EQT|B Chain B, Crystal Structure Of Human Lgp2 C-Terminal Domain In
Complex With Dsrna
Length = 145
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 69 IREITG-ENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV 108
+R++ G +++ + N N+Y + +D ++ K+ D KP V
Sbjct: 29 LRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGV 69
>pdb|1BF6|A Chain A, Phosphotriesterase Homology Protein From Escherichia Coli
pdb|1BF6|B Chain B, Phosphotriesterase Homology Protein From Escherichia Coli
Length = 291
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 76 NIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCM-ENINCFLDVAREM 134
+ID SG +N L +C+ +NDL V+ NV M + M N LDV RE
Sbjct: 15 HIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVR--NVIEMTNRYMGRNAQFMLDVMRET 72
Query: 135 GV 136
G+
Sbjct: 73 GI 74
>pdb|2W4R|A Chain A, Crystal Structure Of The Regulatory Domain Of Human Lgp2
pdb|2W4R|B Chain B, Crystal Structure Of The Regulatory Domain Of Human Lgp2
pdb|2W4R|C Chain C, Crystal Structure Of The Regulatory Domain Of Human Lgp2
pdb|2W4R|D Chain D, Crystal Structure Of The Regulatory Domain Of Human Lgp2
Length = 142
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 69 IREITG-ENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV 108
+R++ G +++ + N N+Y + +D ++ K+ D KP V
Sbjct: 33 LRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGV 73
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 81 GNMDNFYEILKDGTLLCKLVNDLKPNSV 108
GNM Y L D T L K++N++KP +
Sbjct: 79 GNMKLHYGDLTDSTCLVKIINEVKPTEI 106
>pdb|2RQA|A Chain A, Solution Structure Of Lgp2 Ctd
Length = 137
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 69 IREITG-ENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV 108
+R++ G +++ + N N+Y + +D ++ K+ D KP V
Sbjct: 28 LRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGV 68
>pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
pdb|3P83|E Chain E, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
pdb|3P83|F Chain F, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus
Length = 217
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 2 SDRINSKYSEELAQE----CLEWIREITGENIDTSGNMDNFYEILKDG----TLLCKTTI 53
S +++ EELA+E C + +++ EN+D EILK+ L K I
Sbjct: 50 SKKLSQGRREELAEEIRKICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRLKPEI 109
Query: 54 NSKYSEELAQECLEW-IREITGENIDTSGNMDNFYEILKDGTLLCKL 99
S ++ E L + EITG + D Y ++ +++ K+
Sbjct: 110 AYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKV 156
>pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus
pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt
Hexammine Chloride
Length = 225
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 2 SDRINSKYSEELAQE----CLEWIREITGENIDTSGNMDNFYEILKDG----TLLCKTTI 53
S +++ EELA+E C + +++ EN+D EILK+ L K I
Sbjct: 58 SKKLSQGRREELAEEIRKICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRLKPEI 117
Query: 54 NSKYSEELAQECLEW-IREITGENIDTSGNMDNFYEILKDGTLLCKL 99
S ++ E L + EITG + D Y ++ +++ K+
Sbjct: 118 AYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKV 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,429,417
Number of Sequences: 62578
Number of extensions: 300238
Number of successful extensions: 586
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 40
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)