Query psy6125
Match_columns 242
No_of_seqs 253 out of 1063
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 18:16:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2046|consensus 100.0 2.2E-53 4.7E-58 359.7 14.4 174 49-242 14-188 (193)
2 COG5199 SCP1 Calponin [Cytoske 100.0 2.5E-41 5.3E-46 274.7 11.3 169 53-242 6-177 (178)
3 cd00014 CH Calponin homology d 99.8 4E-21 8.7E-26 147.5 9.0 104 61-167 2-106 (107)
4 KOG2128|consensus 99.8 2.3E-20 4.9E-25 191.8 9.5 128 62-216 44-173 (1401)
5 COG5261 IQG1 Protein involved 99.8 3.5E-20 7.6E-25 182.9 10.3 128 62-216 46-174 (1054)
6 KOG2996|consensus 99.8 5.1E-19 1.1E-23 169.5 7.8 108 60-167 2-119 (865)
7 smart00033 CH Calponin homolog 99.8 1.7E-18 3.8E-23 131.5 7.7 99 62-163 2-103 (103)
8 PF00307 CH: Calponin homology 99.7 2.3E-16 5.1E-21 120.9 8.7 102 62-166 1-106 (108)
9 KOG0532|consensus 99.6 2.9E-15 6.4E-20 144.6 7.7 103 60-167 576-686 (722)
10 PF00402 Calponin: Calponin fa 99.4 1.6E-13 3.5E-18 80.3 1.6 24 219-242 1-25 (26)
11 KOG2046|consensus 99.0 2.1E-10 4.5E-15 98.0 3.4 54 1-58 14-67 (193)
12 KOG0046|consensus 98.8 4.8E-09 1E-13 100.7 4.2 96 56-152 115-220 (627)
13 PF11971 CAMSAP_CH: CAMSAP CH 98.3 4.1E-07 9E-12 68.6 3.7 68 81-149 11-83 (85)
14 PF06395 CDC24: CDC24 Calponin 98.3 2E-06 4.3E-11 65.4 6.4 81 83-163 3-88 (89)
15 COG5199 SCP1 Calponin [Cytoske 97.7 2.9E-05 6.4E-10 64.1 3.7 53 2-59 3-55 (178)
16 KOG0046|consensus 96.9 0.0029 6.2E-08 61.7 7.9 85 61-151 389-479 (627)
17 cd00014 CH Calponin homology d 96.9 0.0008 1.7E-08 51.0 2.9 44 13-60 2-45 (107)
18 COG5069 SAC6 Ca2+-binding acti 96.6 0.0029 6.2E-08 61.1 4.7 82 64-146 123-217 (612)
19 PF00307 CH: Calponin homology 96.4 0.002 4.2E-08 48.8 2.3 36 14-50 1-36 (108)
20 KOG0517|consensus 96.1 0.013 2.9E-07 63.9 7.1 87 61-151 49-135 (2473)
21 smart00033 CH Calponin homolog 95.8 0.0059 1.3E-07 45.7 2.2 42 14-59 2-43 (103)
22 KOG3631|consensus 95.5 0.069 1.5E-06 48.5 8.2 121 40-167 67-195 (365)
23 KOG2128|consensus 94.0 0.035 7.6E-07 59.4 2.7 59 15-78 45-117 (1401)
24 PF06294 DUF1042: Domain of Un 93.9 0.17 3.7E-06 42.3 6.2 92 65-165 1-100 (158)
25 KOG3000|consensus 86.6 1.5 3.2E-05 40.4 5.5 82 61-151 16-100 (295)
26 COG5261 IQG1 Protein involved 83.3 0.74 1.6E-05 47.7 2.2 40 15-60 47-86 (1054)
27 KOG0532|consensus 68.5 5.2 0.00011 40.4 3.4 71 16-103 580-665 (722)
28 PF03216 Rhabdo_ncap_2: Rhabdo 64.7 13 0.00029 34.2 5.0 122 34-167 117-260 (357)
29 PF11971 CAMSAP_CH: CAMSAP CH 48.7 4.1 8.9E-05 30.6 -0.8 27 33-61 11-37 (85)
30 PF05622 HOOK: HOOK protein; 48.0 33 0.00072 35.1 5.3 70 58-133 5-81 (713)
31 cd08539 SAM_PNT-ESE-3-like Ste 47.0 17 0.00037 26.8 2.2 38 62-101 10-48 (74)
32 cd08537 SAM_PNT-ESE-1-like Ste 43.3 23 0.00051 26.3 2.5 38 62-101 15-53 (78)
33 PF09441 Abp2: ARS binding pro 37.3 49 0.0011 28.0 3.8 75 15-107 68-160 (175)
34 cd08757 SAM_PNT_ESE Sterile al 35.7 23 0.00049 25.3 1.4 38 62-101 7-45 (68)
35 cd08203 SAM_PNT Sterile alpha 33.8 29 0.00062 24.6 1.7 36 62-101 7-43 (66)
36 PF14043 WVELL: WVELL protein 32.6 1.2E+02 0.0026 22.3 4.7 41 14-72 20-62 (75)
37 cd08535 SAM_PNT-Tel_Yan Steril 29.7 33 0.00071 24.7 1.4 38 62-102 8-45 (68)
38 cd08536 SAM_PNT-Mae Sterile al 29.3 28 0.0006 24.9 1.0 37 62-102 7-44 (66)
39 smart00251 SAM_PNT SAM / Point 29.0 30 0.00064 25.7 1.1 43 56-101 14-58 (82)
40 KOG3823|consensus 27.5 1.5E+02 0.0032 29.4 5.7 49 65-113 337-392 (630)
41 PF03221 HTH_Tnp_Tc5: Tc5 tran 27.5 64 0.0014 21.7 2.6 22 10-31 1-22 (66)
42 cd08531 SAM_PNT-ERG_FLI-1 Ster 26.4 42 0.00091 24.6 1.5 36 62-101 10-47 (75)
43 KOG0035|consensus 26.0 48 0.001 35.1 2.3 87 64-155 146-233 (890)
44 KOG2996|consensus 25.6 67 0.0014 32.7 3.1 44 14-58 4-52 (865)
45 PF11559 ADIP: Afadin- and alp 25.3 1.3E+02 0.0028 24.3 4.4 42 126-167 5-47 (151)
46 cd08532 SAM_PNT-PDEF-like Ster 24.3 43 0.00092 24.6 1.2 40 57-101 8-50 (76)
47 cd08538 SAM_PNT-ESE-2-like Ste 23.6 54 0.0012 24.3 1.6 38 62-101 12-50 (78)
48 PF03494 Beta-APP: Beta-amyloi 22.5 36 0.00078 21.6 0.4 11 222-232 20-30 (39)
49 PF02198 SAM_PNT: Sterile alph 22.2 32 0.0007 25.3 0.2 42 58-102 16-59 (84)
50 KOG1271|consensus 21.6 88 0.0019 27.5 2.8 89 58-154 44-134 (227)
51 PF12844 HTH_19: Helix-turn-he 21.5 37 0.00081 22.9 0.4 23 124-146 41-63 (64)
52 cd08534 SAM_PNT-GABP-alpha Ste 20.6 64 0.0014 24.5 1.5 41 57-101 17-60 (89)
53 KOG3355|consensus 20.5 1.3E+02 0.0027 25.8 3.4 8 96-103 141-148 (177)
54 PF10281 Ish1: Putative stress 20.3 2E+02 0.0044 17.7 3.6 30 62-92 6-36 (38)
No 1
>KOG2046|consensus
Probab=100.00 E-value=2.2e-53 Score=359.67 Aligned_cols=174 Identities=49% Similarity=0.813 Sum_probs=161.3
Q ss_pred hhhhhcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHH
Q psy6125 49 CKTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFL 128 (242)
Q Consensus 49 c~~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL 128 (242)
++.|+.+||+++++.++++||+.+.....+ ...+|.+.|+||++||+|+|+|+|++++++++|+++|++||||++|+
T Consensus 14 v~~k~~~k~~~~~~~el~~WI~~~~~~~~~---~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~~~f~qmEnIs~Fi 90 (193)
T KOG2046|consen 14 VQQKIESKYDDELEKELREWIENVVLTELP---ARGDFQDLLKDGVILCKLINKLYPGVVKKINESKMAFVQMENISNFI 90 (193)
T ss_pred HHHHhhcccCHHHHHHHHHHHHHhhccCCC---cccCHHHHHcchHHHHHHHHHhCcCcccccccccccHHHHHHHHHHH
Confidence 346899999999999999999997555543 35789999999999999999999988889999999999999999999
Q ss_pred HHHHHcCCCCcCccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCCCCCCCccccccccccc
Q psy6125 129 DVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEADKNVRHFT 208 (242)
Q Consensus 129 ~ac~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~k~~~~~~r~ft 208 (242)
++|+.|||++.++|+|+||||++|+.+|+.||++|++.| .....+++|.||||.|++++|+|+
T Consensus 91 ~a~~~ygv~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a-----------------~~~~~~~~~~~g~k~a~kq~r~f~ 153 (193)
T KOG2046|consen 91 KAAKKYGVPEVDLFQTVDLFEGKDMAQVQVTLLALARKA-----------------QKKGLFSGPGIGPKLAEKQPREFT 153 (193)
T ss_pred HHHHhcCCChhhcccccccccCCCHHHHHHHHHHHHHHH-----------------hhccccCCCCcCCchhhcCcccCC
Confidence 999999999999999999999999999999999999999 222356799999999999999999
Q ss_pred HHHhhcccceeeeccccCCCCCcCCCC-CCCCCCC
Q psy6125 209 EEQLKAGQTVISLQYGSNKGANQSGIN-FGNTRHM 242 (242)
Q Consensus 209 ~~~l~~~~~~~~~q~g~~~~asq~g~~-~g~~r~i 242 (242)
++||++|+.||+|||||||+|||+||+ ||++||+
T Consensus 154 ~~~lk~g~~vi~LQmGtnk~asq~g~~~~G~~R~l 188 (193)
T KOG2046|consen 154 DEQLKAGQNVIGLQMGTNKGASQAGMTAYGTRRHL 188 (193)
T ss_pred HHHHhcccceEEEeeeccchhhccccccccccccc
Confidence 999999999999999999999999999 9999985
No 2
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=100.00 E-value=2.5e-41 Score=274.69 Aligned_cols=169 Identities=34% Similarity=0.547 Sum_probs=154.6
Q ss_pred hcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHH
Q psy6125 53 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAR 132 (242)
Q Consensus 53 i~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~ 132 (242)
-..+..++.+++++.||+.++++++.+ +-+|.+.|+|||+||++.|...|+.| ++.+|+|+|.+||||+.|+.+++
T Consensus 6 ~~~~~~~~~~kev~~Wie~~l~~k~~p---pgdll~~lkdGv~lCril~ea~~~~I-~yKeSkmpFVQmenIs~Fin~~~ 81 (178)
T COG5199 6 NRCPGMDKQQKEVTLWIETVLGEKFEP---PGDLLSLLKDGVRLCRILNEASPLDI-KYKESKMPFVQMENISSFINGLK 81 (178)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhhhCC---cccHHHHHhcchHHHHHHhhcCcccc-eecccCCceeeHHHHHHHHHHHH
Confidence 345677889999999999999999963 45799999999999999999998875 67799999999999999999999
Q ss_pred HcCCCCcCccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCCCCCCCcccccccccc-cHHH
Q psy6125 133 EMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEADKNVRHF-TEEQ 211 (242)
Q Consensus 133 ~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~k~~~~~~r~f-t~~~ 211 (242)
+++||+.+||||.||||.||+.+|+.||++|||+| .....+.+|.+||+.|++.+|.| +.++
T Consensus 82 k~~vpe~elFQT~DLFE~kd~~qV~~~l~slSRya-----------------~K~~~~~~p~lGP~LatKkprvfS~q~~ 144 (178)
T COG5199 82 KLRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYA-----------------QKERMFSGPFLGPHLATKKPRVFSSQEV 144 (178)
T ss_pred HhCCCHHHHHHhhhHHhhcCHHHHHHHHHHHHHHH-----------------HHhcCCCCCccCccccccCCcccccHHH
Confidence 99999999999999999999999999999999999 33456779999999999999999 6889
Q ss_pred hhcccceeeeccccCCCCCcC--CCCCCCCCCC
Q psy6125 212 LKAGQTVISLQYGSNKGANQS--GINFGNTRHM 242 (242)
Q Consensus 212 l~~~~~~~~~q~g~~~~asq~--g~~~g~~r~i 242 (242)
|..++++|.|||||.++++|+ ++.+|.+|++
T Consensus 145 l~~~~g~~~lqyGy~d~~~q~tek~a~~~rrD~ 177 (178)
T COG5199 145 LDRSKGAIHLQYGYSDLSEQSTEKGASNVRRDL 177 (178)
T ss_pred HhhcccceEeeecccccchhcccccccceecCC
Confidence 999999999999999999999 5679999875
No 3
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.85 E-value=4e-21 Score=147.47 Aligned_cols=104 Identities=39% Similarity=0.559 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcccccc-CCccchhhhhHHHHHHHHHHcCCCCc
Q psy6125 61 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINV-STMAFKCMENINCFLDVAREMGVPAQ 139 (242)
Q Consensus 61 ~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~-~~~~f~~~ENI~~FL~ac~~lGv~~~ 139 (242)
.++++.+||+.+++.... ....+|.+.|+||++||+|+|.+.|+.++.... +...|.+++||+.|+++|+.+|++..
T Consensus 2 ~~~~l~~Win~~l~~~~~--~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~ 79 (107)
T cd00014 2 QKEELLRWINKVLGEYGP--VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVV 79 (107)
T ss_pred hHHHHHHHHHHHhccCCC--ccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCcee
Confidence 478899999999998874 347899999999999999999999999876654 67789999999999999999999998
Q ss_pred CccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 140 ETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 140 ~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
+|++.||++.+|..+|+.||++|.++.
T Consensus 80 -~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 80 -NFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred -ccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 899999999999999999999999863
No 4
>KOG2128|consensus
Probab=99.82 E-value=2.3e-20 Score=191.82 Aligned_cols=128 Identities=26% Similarity=0.431 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccc-cCCccchhhhhHHHHHHHHHHcCCCCcC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKIN-VSTMAFKCMENINCFLDVAREMGVPAQE 140 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~-~~~~~f~~~ENI~~FL~ac~~lGv~~~~ 140 (242)
.+|++.|||+|+|+++| +..+|.+.||+||+|++|.|.+.|+.-.++. .....|++.+||..|+++.+.+|+|+..
T Consensus 44 ~eE~k~W~e~cl~edL~---pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~frHtdNi~q~~~~me~iglP~iF 120 (1401)
T KOG2128|consen 44 VEEAKRWIEECLGEDLP---PTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLHFRHTDNINQWLRAMESIGLPEIF 120 (1401)
T ss_pred HHHHHHHHHHHhcccCC---CchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCceeecchhHHHHHHHHhhcCCCccc
Confidence 57999999999999996 4678999999999999999999997654444 4455699999999999999999999999
Q ss_pred ccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCCCCCCCc-ccccccccccHHHhhccc
Q psy6125 141 TFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPK-EADKNVRHFTEEQLKAGQ 216 (242)
Q Consensus 141 lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~k-~~~~~~r~ft~~~l~~~~ 216 (242)
.|+|.|+||+|||+ |++|||||+.+. .. |.+.|. ....++-.||+|++...+
T Consensus 121 ~~E~~Dvy~~kN~p-~i~cihaLs~~l--------------------~k---~~~aP~l~~~~gk~~Ft~eei~~~k 173 (1401)
T KOG2128|consen 121 YPETTDVYEGKNIP-VIYCIHALSLYL--------------------FK---QGKAPPLQNLSGKVSFTEEEISNMK 173 (1401)
T ss_pred ccchhhhhcCCCCc-eeeHHHHHHHHH--------------------hc---CCCCcccccccccCCccHHHHHHHH
Confidence 99999999999999 999999999998 11 222222 345788899999986543
No 5
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.82 E-value=3.5e-20 Score=182.92 Aligned_cols=128 Identities=28% Similarity=0.487 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccc-cCCccchhhhhHHHHHHHHHHcCCCCcC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKIN-VSTMAFKCMENINCFLDVAREMGVPAQE 140 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~-~~~~~f~~~ENI~~FL~ac~~lGv~~~~ 140 (242)
..|++.||+++++++++ ...|.+.||+||+|.+|...+.|+.+.+|. ..+.+|++.+||+.||.....+|+|+..
T Consensus 46 v~EaK~WIee~~~~~l~----~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQfrHtdNIN~Fld~i~~vGlPe~F 121 (1054)
T COG5261 46 VSEAKIWIEEVIEEALP----ELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRHTDNINAFLDLIEHVGLPESF 121 (1054)
T ss_pred HHHHHHHHHHHhccCCc----hhhHHHHHhccchHHHHHHHhCCCceeEeeecccceeeccccHHHHHhHhhhcCCccee
Confidence 57899999999999996 578999999999999999999999998887 5688999999999999999999999999
Q ss_pred ccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCCCCCCCcccccccccccHHHhhccc
Q psy6125 141 TFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEADKNVRHFTEEQLKAGQ 216 (242)
Q Consensus 141 lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~k~~~~~~r~ft~~~l~~~~ 216 (242)
-|+..||||+||+++|++|||||+.+. ..++ +-|-....+...||+|++++..
T Consensus 122 hFEl~DlYekKN~pkViyciHaL~~~l------------------s~~g-----~tpli~s~~~~sFt~edia~~~ 174 (1054)
T COG5261 122 HFELQDLYEKKNIPKVIYCIHALISML------------------SWPG-----KTPLINSSGQISFTKEDIAACK 174 (1054)
T ss_pred eeehHhhhccCCcchhHHHHHHHHHHh------------------cCCC-----CCcccccccCccccHHHHHHHH
Confidence 999999999999999999999999987 1122 2232334556789999887643
No 6
>KOG2996|consensus
Probab=99.77 E-value=5.1e-19 Score=169.51 Aligned_cols=108 Identities=31% Similarity=0.606 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHhCCCCCC-----CCChhhHHHHhhhcHHHHHHHHhhcCCCc--cccc-c-CCccchhhhhHHHHHHH
Q psy6125 60 ELAQECLEWIREITGENIDT-----SGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKIN-V-STMAFKCMENINCFLDV 130 (242)
Q Consensus 60 e~~~e~~~WI~~vlg~~~~~-----~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~-~-~~~~f~~~ENI~~FL~a 130 (242)
++|.+|..|+.++-..+-++ .+.+-+|+.+|||||+||+|+|.|.|++| ++|+ . ...+|.|..||+.||.+
T Consensus 2 elWrqCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~ 81 (865)
T KOG2996|consen 2 ELWRQCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMF 81 (865)
T ss_pred cHHHHHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHH
Confidence 57999999999987666555 36778999999999999999999999998 7888 3 35589999999999999
Q ss_pred HH-HcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 131 AR-EMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 131 c~-~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
|. .+|+.+++||++.|||+-+++.+|+.||..||++-
T Consensus 82 C~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~ 119 (865)
T KOG2996|consen 82 CCEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTP 119 (865)
T ss_pred HHHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhccCh
Confidence 94 69999999999999999999999999999999875
No 7
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.76 E-value=1.7e-18 Score=131.53 Aligned_cols=99 Identities=35% Similarity=0.485 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccc--cCCccchhhhhHHHHHHHHHHcCCCCc
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKIN--VSTMAFKCMENINCFLDVAREMGVPAQ 139 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~--~~~~~f~~~ENI~~FL~ac~~lGv~~~ 139 (242)
++++.+|++.+++...+ ...++|.+.|+||++||+|+|.+.|+.++... .+...|.+++||+.|+++|+++| ...
T Consensus 2 ~~~l~~Win~~l~~~~~--~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g-~~~ 78 (103)
T smart00033 2 EKTLLRWVNSLLAEYGK--PPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLG-GKL 78 (103)
T ss_pred hHHHHHHHHHHcccCCC--CcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcC-Cee
Confidence 57899999999987642 34689999999999999999999999987554 45668999999999999999998 456
Q ss_pred Cccccchhhcc-cChhHHHHHHHHH
Q psy6125 140 ETFQTVDLWER-QNLNSVVICLQSL 163 (242)
Q Consensus 140 ~lF~t~DL~E~-kn~~~Vv~cL~aL 163 (242)
.+|++.||+++ +++.+|+.||+++
T Consensus 79 ~~~~~~Dl~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 79 VLFEPEDLVEGNKLILGVIWTLILL 103 (103)
T ss_pred eccCHHHHhhcchHHHHHHHHHHhC
Confidence 79999999999 7999999999864
No 8
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.67 E-value=2.3e-16 Score=120.91 Aligned_cols=102 Identities=36% Similarity=0.543 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--cccc-cCCccchhhhhHHHHHHHHHH-cCCC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKIN-VSTMAFKCMENINCFLDVARE-MGVP 137 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~-~~~~~f~~~ENI~~FL~ac~~-lGv~ 137 (242)
|+++.+||+++++.. .......+|.+.|+||++||+|+|.+.|+.+ .+++ ..+..|.+++||..|+++|++ +|++
T Consensus 1 e~~ll~Win~~l~~~-~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~ 79 (108)
T PF00307_consen 1 EKELLKWINSHLEKY-GKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIP 79 (108)
T ss_dssp HHHHHHHHHHHHTTS-TTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHcccc-cCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCC
Confidence 578999999999866 2122456899999999999999999999986 4452 112689999999999999998 9999
Q ss_pred CcCccccchhhcccChhHHHHHHHHHHHh
Q psy6125 138 AQETFQTVDLWERQNLNSVVICLQSLGRK 166 (242)
Q Consensus 138 ~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~ 166 (242)
... ++.||++.+|...|+.+|.+|.+.
T Consensus 80 ~~~--~~~dl~~~~~~~~vl~~l~~l~~~ 106 (108)
T PF00307_consen 80 PLL--SPEDLVEKGDEKSVLSFLWQLFRY 106 (108)
T ss_dssp CTS---HHHHHSTT-HHHHHHHHHHHHHH
T ss_pred CCC--CHHHHHHCcCHHHHHHHHHHHHHH
Confidence 755 999999999999999999999876
No 9
>KOG0532|consensus
Probab=99.58 E-value=2.9e-15 Score=144.60 Aligned_cols=103 Identities=29% Similarity=0.561 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCC------ccchhhhhHHHHHHHHHH
Q psy6125 60 ELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVST------MAFKCMENINCFLDVARE 133 (242)
Q Consensus 60 e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~------~~f~~~ENI~~FL~ac~~ 133 (242)
++..++++-||.-+..+++ +||..+|.||||||+|+|.+.|.+|.-|+-+. ..-+|+.|+.+||++|++
T Consensus 576 eL~~QLRk~iEtRLk~sLp-----~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRk 650 (722)
T KOG0532|consen 576 ELMLQLRKLIETRLKVSLP-----EDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRK 650 (722)
T ss_pred HHHHHHHHHHHHHhcccCc-----hhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHH
Confidence 3445666777766666774 89999999999999999999999999888432 247899999999999999
Q ss_pred cCCCCcCccccchhhcc--cChhHHHHHHHHHHHhh
Q psy6125 134 MGVPAQETFQTVDLWER--QNLNSVVICLQSLGRKA 167 (242)
Q Consensus 134 lGv~~~~lF~t~DL~E~--kn~~~Vv~cL~aL~~~a 167 (242)
+|||+.+|+.+.|+..+ +++++|++++.+++..|
T Consensus 651 iGVpEa~lCS~~Dilq~~~r~~rk~~~t~~~~~~~a 686 (722)
T KOG0532|consen 651 IGVPEADLCSPMDILQKIERNPRKVARTVLTVGKKA 686 (722)
T ss_pred cCCChHhhcCHHHhhhhhcccchhHHHHHHhhcccc
Confidence 99999999999999998 99999999999999998
No 10
>PF00402 Calponin: Calponin family repeat; InterPro: IPR000557 Calponin [, ] is a thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin MgATPase activity. Calponin is a basic protein of approximately 34 Kd. Multiple isoforms are found in smooth muscles. Calponin contains three repeats of a well conserved 26 amino acid domain. Such a domain is also found in vertebrate smooth muscle protein (SM22 or transgelin), and a number of other proteins whose physiological role is not yet established, including Drosophila synchronous flight muscle protein SM20, Caenorhabditis elegans unc-87 protein [], rat neuronal protein NP25 [], and an Onchocerca volvulus antigen [].
Probab=99.37 E-value=1.6e-13 Score=80.35 Aligned_cols=24 Identities=63% Similarity=1.079 Sum_probs=22.8
Q ss_pred eeeccccCCCCCcCCCC-CCCCCCC
Q psy6125 219 ISLQYGSNKGANQSGIN-FGNTRHM 242 (242)
Q Consensus 219 ~~~q~g~~~~asq~g~~-~g~~r~i 242 (242)
|+|||||||+|||+||+ ||.+|||
T Consensus 1 i~LQ~GtNk~aSQ~Gmt~~G~~R~i 25 (26)
T PF00402_consen 1 IGLQMGTNKGASQSGMTAFGTPRHI 25 (26)
T ss_pred CcccccccccccccCCccCCCCccc
Confidence 78999999999999995 9999997
No 11
>KOG2046|consensus
Probab=99.00 E-value=2.1e-10 Score=97.98 Aligned_cols=54 Identities=37% Similarity=0.753 Sum_probs=43.2
Q ss_pred CcchhccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhccccc
Q psy6125 1 MSDRINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYS 58 (242)
Q Consensus 1 ~~~K~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd 58 (242)
+++|+++|||+++|+|+++||+.+.....+. +.+|+++||||++|| +++|+.|.
T Consensus 14 v~~k~~~k~~~~~~~el~~WI~~~~~~~~~~---~~~f~~~LKDG~iLC-kl~N~l~p 67 (193)
T KOG2046|consen 14 VQQKIESKYDDELEKELREWIENVVLTELPA---RGDFQDLLKDGVILC-KLINKLYP 67 (193)
T ss_pred HHHHhhcccCHHHHHHHHHHHHHhhccCCCc---ccCHHHHHcchHHHH-HHHHHhCc
Confidence 4789999999999999999999964333321 248999999999999 46766655
No 12
>KOG0046|consensus
Probab=98.77 E-value=4.8e-09 Score=100.67 Aligned_cols=96 Identities=27% Similarity=0.469 Sum_probs=82.4
Q ss_pred cccHHHHHHHHHHHHHHhCCC------CCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--ccccc--CCccchhhhhHH
Q psy6125 56 KYSEELAQECLEWIREITGEN------IDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKINV--STMAFKCMENIN 125 (242)
Q Consensus 56 Kyd~e~~~e~~~WI~~vlg~~------~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~~--~~~~f~~~ENI~ 125 (242)
-|..+...+...||+..++.+ +|.+++..+|++.++||++||+|+|.-.|++| +.||. .-.+|.+.||.+
T Consensus 115 ti~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~ 194 (627)
T KOG0046|consen 115 TINEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLN 194 (627)
T ss_pred eecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchh
Confidence 355677789999999998653 44557788999999999999999999999999 56773 345899999999
Q ss_pred HHHHHHHHcCCCCcCccccchhhcccC
Q psy6125 126 CFLDVAREMGVPAQETFQTVDLWERQN 152 (242)
Q Consensus 126 ~FL~ac~~lGv~~~~lF~t~DL~E~kn 152 (242)
.-|..|+++|+.... +.+.||-||+.
T Consensus 195 l~lnSAkAiGc~VvN-Iga~Dl~eGrp 220 (627)
T KOG0046|consen 195 LALNSAKAIGCTVVN-IGAQDLAEGRP 220 (627)
T ss_pred hHHhhcccccceEEe-cCchhhhcCCc
Confidence 999999999999888 79999999984
No 13
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=98.34 E-value=4.1e-07 Score=68.61 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=58.2
Q ss_pred CChhhHHHHhhhcHHHHHHHHhhcCCCcc--ccc--cCCccchhhhhHHHHHHHHH-HcCCCCcCccccchhhc
Q psy6125 81 GNMDNFYEILKDGTLLCKLVNDLKPNSVK--KIN--VSTMAFKCMENINCFLDVAR-EMGVPAQETFQTVDLWE 149 (242)
Q Consensus 81 ~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~--ki~--~~~~~f~~~ENI~~FL~ac~-~lGv~~~~lF~t~DL~E 149 (242)
+..+||...|+||++||.|++...|+.++ .|+ ++.+.+.++.|+..|.++|. .+|.+...+ ++.||+.
T Consensus 11 ~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l-~~edl~~ 83 (85)
T PF11971_consen 11 PPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHL-EPEDLLY 83 (85)
T ss_pred cchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcC-CHHHHhc
Confidence 46789999999999999999999999984 555 55667999999999999996 589988775 8888864
No 14
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=98.30 E-value=2e-06 Score=65.37 Aligned_cols=81 Identities=23% Similarity=0.510 Sum_probs=64.3
Q ss_pred hhhHHHHhhhcHHHHHHHHhhcCCCcccccc--CCccchhhhhHHHHHHHHH-HcCCCCcCccccchhhcc--cChhHHH
Q psy6125 83 MDNFYEILKDGTLLCKLVNDLKPNSVKKINV--STMAFKCMENINCFLDVAR-EMGVPAQETFQTVDLWER--QNLNSVV 157 (242)
Q Consensus 83 ~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~--~~~~f~~~ENI~~FL~ac~-~lGv~~~~lF~t~DL~E~--kn~~~Vv 157 (242)
...+.+.+|-|.-||-|.|++.|..--.++. +...=.+-..|-.|+.+|+ ++|+|+.++|...|||.. ..+-+|+
T Consensus 3 Vt~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~dT~gfvKVi 82 (89)
T PF06395_consen 3 VTQLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSDDLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGDDTNGFVKVI 82 (89)
T ss_pred HHHHHHHHhCcCcHHHHHHccCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccCCCcchhhHH
Confidence 4678999999999999999999976445532 2223356778999999995 699999999999999975 3577888
Q ss_pred HHHHHH
Q psy6125 158 ICLQSL 163 (242)
Q Consensus 158 ~cL~aL 163 (242)
.++..+
T Consensus 83 ~~V~~v 88 (89)
T PF06395_consen 83 KVVNRV 88 (89)
T ss_pred HHHHhh
Confidence 776543
No 15
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=97.73 E-value=2.9e-05 Score=64.14 Aligned_cols=53 Identities=25% Similarity=0.493 Sum_probs=44.5
Q ss_pred cchhccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccH
Q psy6125 2 SDRINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSE 59 (242)
Q Consensus 2 ~~K~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~ 59 (242)
+.|-..++.+++++|+..||+.++++++.+. .++.+.||||++||+ |-++-++
T Consensus 3 ~~~~~~~~~~~~~kev~~Wie~~l~~k~~pp---gdll~~lkdGv~lCr--il~ea~~ 55 (178)
T COG5199 3 NTKNRCPGMDKQQKEVTLWIETVLGEKFEPP---GDLLSLLKDGVRLCR--ILNEASP 55 (178)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHhhhCCc---ccHHHHHhcchHHHH--HHhhcCc
Confidence 5677889999999999999999999999873 379999999999996 5443443
No 16
>KOG0046|consensus
Probab=96.95 E-value=0.0029 Score=61.66 Aligned_cols=85 Identities=24% Similarity=0.430 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--cccccC----CccchhhhhHHHHHHHHHHc
Q psy6125 61 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKINVS----TMAFKCMENINCFLDVAREM 134 (242)
Q Consensus 61 ~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~~~----~~~f~~~ENI~~FL~ac~~l 134 (242)
.++-.+.||+++-..+. ..++++.|+||.||-++..++.||.+ ++.+.+ +++|+..||.+.-.+.-+.+
T Consensus 389 eer~fr~WmNSlgv~p~-----vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk~~ 463 (627)
T KOG0046|consen 389 EERTFRLWMNSLGVNPY-----VNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGKQL 463 (627)
T ss_pred HHHHHHHHHHhcCCcHH-----HHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHhhc
Confidence 45668899998744333 68999999999999999999999987 445433 56799999999999988877
Q ss_pred CCCCcCccccchhhccc
Q psy6125 135 GVPAQETFQTVDLWERQ 151 (242)
Q Consensus 135 Gv~~~~lF~t~DL~E~k 151 (242)
+.+-.. ..-.|+++|.
T Consensus 464 ~FSLVg-i~G~DI~dGN 479 (627)
T KOG0046|consen 464 KFSLVG-IAGQDIVDGN 479 (627)
T ss_pred ceeeec-cccccccccc
Confidence 766555 5678888874
No 17
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=96.88 E-value=0.0008 Score=51.01 Aligned_cols=44 Identities=36% Similarity=0.597 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 13 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 13 ~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
.++++++||+.++++... ....+|.+.|+||++||+ +.+.+.|.
T Consensus 2 ~~~~l~~Win~~l~~~~~--~~v~~~~~~l~dG~~L~~--Ll~~~~p~ 45 (107)
T cd00014 2 QKEELLRWINKVLGEYGP--VTINNFSTDLKDGIALCK--LLNSLSPD 45 (107)
T ss_pred hHHHHHHHHHHHhccCCC--ccHHHHHHHHhchHHHHH--HHHHHCcc
Confidence 467899999999998775 234689999999999995 44445554
No 18
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=96.57 E-value=0.0029 Score=61.14 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=59.7
Q ss_pred HHHHHHHHH------hCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc-ccc------ccCCccchhhhhHHHHHHH
Q psy6125 64 ECLEWIREI------TGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV-KKI------NVSTMAFKCMENINCFLDV 130 (242)
Q Consensus 64 e~~~WI~~v------lg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i-~ki------~~~~~~f~~~ENI~~FL~a 130 (242)
|+..-|+.+ +|.-.| +.+..+|.+..|||.++|+|+|...|+.+ +.+ +..-..|++.||-+.|+..
T Consensus 123 elt~~~~lllwc~~~t~~y~p-~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Igi 201 (612)
T COG5069 123 ELTKHINLLLWCDEDTGGYKP-EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGI 201 (612)
T ss_pred hHHhhhhhheeccccccCcCC-CccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhch
Confidence 455545544 343343 45678999999999999999999999975 332 2333469999999999999
Q ss_pred HHHcCCCCcCccccch
Q psy6125 131 AREMGVPAQETFQTVD 146 (242)
Q Consensus 131 c~~lGv~~~~lF~t~D 146 (242)
++.+|+-+.-=....|
T Consensus 202 ~rli~vedivnV~~pD 217 (612)
T COG5069 202 ARLIGVEDIVNVSIPD 217 (612)
T ss_pred HhhcCcceeeecCCcc
Confidence 9999976644344455
No 19
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=96.44 E-value=0.002 Score=48.84 Aligned_cols=36 Identities=36% Similarity=0.664 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhh
Q psy6125 14 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCK 50 (242)
Q Consensus 14 ~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~ 50 (242)
|++++.||.++++.. +......+|.+.|+||++||+
T Consensus 1 e~~ll~Win~~l~~~-~~~~~v~~~~~~l~dG~~L~~ 36 (108)
T PF00307_consen 1 EKELLKWINSHLEKY-GKGRRVTNFSEDLRDGVVLCK 36 (108)
T ss_dssp HHHHHHHHHHHHTTS-TTTSTCSSTSGGGTTSHHHHH
T ss_pred CHHHHHHHHHHcccc-cCCCCcCcHHHHhcCHHHHHH
Confidence 578999999999866 322334589999999999995
No 20
>KOG0517|consensus
Probab=96.12 E-value=0.013 Score=63.94 Aligned_cols=87 Identities=21% Similarity=0.374 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHHHcCCCCcC
Q psy6125 61 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAREMGVPAQE 140 (242)
Q Consensus 61 ~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~~lGv~~~~ 140 (242)
..+...+|+++.++.-- .-..|++.-|+||+.|.+|...|.-..++|-+..+|..+|.||++.-|++.+.-.|+-.
T Consensus 49 QKKTFTKWvNShL~rv~---c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdKaLqFLkeqkVhLE- 124 (2473)
T KOG0517|consen 49 QKKTFTKWVNSHLARVS---CRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKEQKVHLE- 124 (2473)
T ss_pred HHHhHHHHHHHHHHHhc---chhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHHHHHHHHhcccccc-
Confidence 45678899999884311 13579999999999999999999977789999999999999999999999987666543
Q ss_pred ccccchhhccc
Q psy6125 141 TFQTVDLWERQ 151 (242)
Q Consensus 141 lF~t~DL~E~k 151 (242)
..-+.|+.+|.
T Consensus 125 niGshDIVDGN 135 (2473)
T KOG0517|consen 125 NIGSHDIVDGN 135 (2473)
T ss_pred cCCcccccCCc
Confidence 36778888873
No 21
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=95.82 E-value=0.0059 Score=45.68 Aligned_cols=42 Identities=29% Similarity=0.494 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccH
Q psy6125 14 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSE 59 (242)
Q Consensus 14 ~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~ 59 (242)
+.++++||...++...+ ...++|.+.|+||++||+ +.+.+.|
T Consensus 2 ~~~l~~Win~~l~~~~~--~~v~~~~~~l~dG~~L~~--L~~~l~p 43 (103)
T smart00033 2 EKTLLRWVNSLLAEYGK--PPVTNFSSDLSDGVALCK--LLNSLSP 43 (103)
T ss_pred hHHHHHHHHHHcccCCC--CcHHHHHHHHccHHHHHH--HHHHHCC
Confidence 56899999999997542 234689999999999996 4344444
No 22
>KOG3631|consensus
Probab=95.53 E-value=0.069 Score=48.52 Aligned_cols=121 Identities=22% Similarity=0.335 Sum_probs=86.8
Q ss_pred HHhhcchhhhhhhhcccccH---HHHHHHHHHHHHHh-CCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccc---
Q psy6125 40 EILKDGTLLCKTTINSKYSE---ELAQECLEWIREIT-GENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKIN--- 112 (242)
Q Consensus 40 ~~Lk~g~~Lc~~ki~~Kyd~---e~~~e~~~WI~~vl-g~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~--- 112 (242)
.+|..|-+--..-=.++-|| ++..-+..||++++ ++.+- ..++.+.|-||.||-+|..++..- |++
T Consensus 67 ~~Leege~r~yl~p~sr~DpK~~el~kvLi~WiN~~L~~erIv----Vr~LeEDlfDGqilqkL~ekL~~~---klev~e 139 (365)
T KOG3631|consen 67 TELEEGEKRTYLDPTSRKDPKFEELVKVLIDWINDVLVPERIV----VRSLEEDLFDGQILQKLFEKLAAL---KLEVAE 139 (365)
T ss_pred hhhhcCCceeccCCccccChhHHHHHHHHHHHHHHhhcchhhh----HHhhHHhhhhhHHHHHHHHHHHhh---hccchh
Confidence 34444443222112344454 35566889999976 45553 578999999999999999998532 222
Q ss_pred cCCccchhhhhHHHHHHHH-HHcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 113 VSTMAFKCMENINCFLDVA-REMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 113 ~~~~~f~~~ENI~~FL~ac-~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
-+.+..-+..-+..-+.++ +.++.|+...==.+|...+||+..++.-|.+|+..-
T Consensus 140 vtqse~~QkqKLq~Vleavnr~L~~~~~q~kWsvdsIh~Kdl~ailhLLVaLa~~f 195 (365)
T KOG3631|consen 140 VTQSEIGQKQKLQTVLEAVNRSLQLPEWQAKWSVDSIHNKDLVAILHLLVALAKHF 195 (365)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhcCchhhhccchhhhccchHHHHHHHHHHHHHHc
Confidence 1223445667788889999 579999988878899999999999999999999765
No 23
>KOG2128|consensus
Probab=94.04 E-value=0.035 Score=59.42 Aligned_cols=59 Identities=25% Similarity=0.562 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHHHHH--------------HHHHHHHHHhCCCCC
Q psy6125 15 QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQ--------------ECLEWIREITGENID 78 (242)
Q Consensus 15 ~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e~~~--------------e~~~WI~~vlg~~~~ 78 (242)
.|+..|||+.+|+.++++. ++.+.|++|+.|.+ +.+++.|+.++ .+.+|+..+-+..+|
T Consensus 45 eE~k~W~e~cl~edL~ptt---ele~~LRNGV~LAk--L~~~f~PD~~~~~~~~~~~~frHtdNi~q~~~~me~iglP 117 (1401)
T KOG2128|consen 45 EEAKRWIEECLGEDLPPTT---ELEEGLRNGVYLAK--LGQFFAPDLEQTIYKANDLHFRHTDNINQWLRAMESIGLP 117 (1401)
T ss_pred HHHHHHHHHHhcccCCCch---HHHHHhhhhhHHHH--HHhhcCCcceeeeeecCCceeecchhHHHHHHHHhhcCCC
Confidence 5799999999999998853 68999999999985 88888887654 378898888666554
No 24
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=93.92 E-value=0.17 Score=42.31 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcc--ccccCCccchhhhhHHHH-HHHHHHcCCCCcCc
Q psy6125 65 CLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVK--KINVSTMAFKCMENINCF-LDVAREMGVPAQET 141 (242)
Q Consensus 65 ~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~--ki~~~~~~f~~~ENI~~F-L~ac~~lGv~~~~l 141 (242)
+.+||.. +..+.+ ..++...+.||+++++++..+.|..|. .+......-..+.|-..| .+..+.+|++
T Consensus 1 l~~WL~~-l~ls~~----~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~kl~~~---- 71 (158)
T PF06294_consen 1 LLKWLQS-LDLSRP----PKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLKKLGIK---- 71 (158)
T ss_dssp HHHHHHH-S--S------SS-HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTGGGT------
T ss_pred ChHHHhc-CCCCCC----CCchHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHcCCC----
Confidence 4589998 344443 568999999999999999999998863 222334445568899999 8888999986
Q ss_pred cccchhhc---c--cChhHHHHHHHHHHH
Q psy6125 142 FQTVDLWE---R--QNLNSVVICLQSLGR 165 (242)
Q Consensus 142 F~t~DL~E---~--kn~~~Vv~cL~aL~~ 165 (242)
|...++.. + .-...++++|+..-.
T Consensus 72 l~~~~i~~i~~~~~Gaae~lL~~L~~~l~ 100 (158)
T PF06294_consen 72 LDKEDIEGIINCKPGAAESLLYQLYTKLT 100 (158)
T ss_dssp --HHHHHHHHTT-TTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 55555442 2 235577777776653
No 25
>KOG3000|consensus
Probab=86.63 E-value=1.5 Score=40.42 Aligned_cols=82 Identities=21% Similarity=0.383 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--cccc-cCCccchhhhhHHHHHHHHHHcCCC
Q psy6125 61 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKIN-VSTMAFKCMENINCFLDVAREMGVP 137 (242)
Q Consensus 61 ~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~-~~~~~f~~~ENI~~FL~ac~~lGv~ 137 (242)
.+.|+..|+.+++...+. -.+-|..|-.-|.++..+.|++| ++++ ..+.......|-..+...-..+|+.
T Consensus 16 sR~E~laW~N~~l~~n~~-------kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~~f~klgi~ 88 (295)
T KOG3000|consen 16 SRLEILAWINDLLQLNLT-------KIEELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQTCFNKLGID 88 (295)
T ss_pred chHHHHHHHHhhhhcchh-------hhhhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHHHHHhcCCc
Confidence 467899999999988773 56788999999999999999987 4554 3444455566666666555788887
Q ss_pred CcCccccchhhccc
Q psy6125 138 AQETFQTVDLWERQ 151 (242)
Q Consensus 138 ~~~lF~t~DL~E~k 151 (242)
+ .-...+|.-++
T Consensus 89 k--~v~vdkLvKg~ 100 (295)
T KOG3000|consen 89 K--VVDVDKLVKGP 100 (295)
T ss_pred c--cccHHHHhccc
Confidence 5 44556665554
No 26
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=83.27 E-value=0.74 Score=47.68 Aligned_cols=40 Identities=25% Similarity=0.565 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 15 QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 15 ~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
.|+..|||++++++.+. ..|.+.|++|+.|.+ +-+++.|+
T Consensus 47 ~EaK~WIee~~~~~l~~----~~fe~slRnGV~La~--l~q~f~pd 86 (1054)
T COG5261 47 SEAKIWIEEVIEEALPE----LCFEDSLRNGVFLAK--LTQRFNPD 86 (1054)
T ss_pred HHHHHHHHHHhccCCch----hhHHHHHhccchHHH--HHHHhCCC
Confidence 57889999999998874 479999999999874 66666655
No 27
>KOG0532|consensus
Probab=68.48 E-value=5.2 Score=40.36 Aligned_cols=71 Identities=21% Similarity=0.424 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHHHHHHHHHHHHHHhCCCCCCC-----------CChh
Q psy6125 16 ECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIREITGENIDTS-----------GNMD 84 (242)
Q Consensus 16 e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~-----------~~~~ 84 (242)
+++.-||.-+--+++ +|+...|.||++||+ +++..-|.. |-...+|.+ .+++
T Consensus 580 QLRk~iEtRLk~sLp-----~Dl~aALtDGViLCh--LaN~lRPRS----------V~SIHVPSPaV~klsmarcrrNVd 642 (722)
T KOG0532|consen 580 QLRKLIETRLKVSLP-----EDLAAALTDGVILCH--LANHLRPRS----------VASIHVPSPAVPKLSMARCRRNVD 642 (722)
T ss_pred HHHHHHHHHhcccCc-----hhHHHHhhcchhhHh--hhcccCCCC----------ccceecCCCccchhHHHHHHHhHH
Confidence 455555555554444 479999999999996 555444421 111111111 3568
Q ss_pred hHHHHhhh-cH---HHHHHHHhh
Q psy6125 85 NFYEILKD-GT---LLCKLVNDL 103 (242)
Q Consensus 85 ~f~~~LrD-Gv---vLCkL~N~l 103 (242)
+|.+++|- || .||.-.+.+
T Consensus 643 nFLeaCRkiGVpEa~lCS~~Dil 665 (722)
T KOG0532|consen 643 NFLEACRKIGVPEADLCSPMDIL 665 (722)
T ss_pred HHHHHHHHcCCChHhhcCHHHhh
Confidence 89999986 54 466555444
No 28
>PF03216 Rhabdo_ncap_2: Rhabdovirus nucleoprotein; InterPro: IPR004902 This is a family of Rhabdovirus nucleocapsid proteins. These proteins undergo phosphorylation.; GO: 0019013 viral nucleocapsid
Probab=64.69 E-value=13 Score=34.23 Aligned_cols=122 Identities=21% Similarity=0.299 Sum_probs=74.9
Q ss_pred CchhHHHHhhcchhhhhhhhcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc-----
Q psy6125 34 NMDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV----- 108 (242)
Q Consensus 34 ~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i----- 108 (242)
..|+..++.|.-..-|. +.-||+-+. ..++|..-+++--. ..+..++...=.|--+|.+|+-.++||.-
T Consensus 117 ~~en~~eiVkG~L~TCa--Ll~KY~VdK---M~kY~~~KL~~L~~-sqGv~EL~~~~~~~~~l~kl~~~vRpGQKltkai 190 (357)
T PF03216_consen 117 NNENVMEIVKGLLMTCA--LLTKYSVDK---MIKYIQNKLERLAT-SQGVGELQHFSADRAALAKLAACVRPGQKLTKAI 190 (357)
T ss_pred ChhhHHHHHHHHHHHHH--HHHHhcHHH---HHHHHHHHHHHHhh-ccCcchhheecccHHHHHHHHHhcCchhHHHHHH
Confidence 44567777776667786 667898653 45555554432111 11233455555556677777777777641
Q ss_pred -----cccccCC------------ccchhhhhHHHHHHHHHHcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 109 -----KKINVST------------MAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 109 -----~ki~~~~------------~~f~~~ENI~~FL~ac~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
.++.++. ..-..|.=|..|-++++.+|.+. .||.|.-+|.+++.++..+-+..
T Consensus 191 yg~IL~~l~dp~t~~~akal~a~rL~gTGMtmiglFtqAa~nlGa~p------A~LLedLcm~s~v~sarrivkLm 260 (357)
T PF03216_consen 191 YGFILFELADPQTQRRAKALFAMRLNGTGMTMIGLFTQAAKNLGATP------ADLLEDLCMGSLVESARRIVKLM 260 (357)
T ss_pred HHHHHHHhcCcccHHHHHHHHHhhhcCCCceehHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 12234555899999999999864 56777778888888877766544
No 29
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=48.75 E-value=4.1 Score=30.56 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=21.7
Q ss_pred CCchhHHHHhhcchhhhhhhhcccccHHH
Q psy6125 33 GNMDNFYEILKDGTLLCKTTINSKYSEEL 61 (242)
Q Consensus 33 ~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e~ 61 (242)
+..++|...|.||.+||. +...|-|+.
T Consensus 11 ~~v~dl~~~l~DG~~Lc~--Lih~Y~P~~ 37 (85)
T PF11971_consen 11 PPVEDLTQDLSDGRALCA--LIHFYCPQL 37 (85)
T ss_pred cchhhhhhhhccHHHHHH--HHHHhCcce
Confidence 345789999999999996 566688775
No 30
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=47.98 E-value=33 Score=35.10 Aligned_cols=70 Identities=19% Similarity=0.328 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc-----cccccC-Ccc-chhhhhHHHHHHH
Q psy6125 58 SEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV-----KKINVS-TMA-FKCMENINCFLDV 130 (242)
Q Consensus 58 d~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i-----~ki~~~-~~~-f~~~ENI~~FL~a 130 (242)
.+++..-+..||... ..+-| ..=+..|.|||+|..++..|.|... .+|+.. ... ...+.|+...++.
T Consensus 5 ~~~l~~~Lv~Wv~tf-~~~~~-----~~~~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~ 78 (713)
T PF05622_consen 5 KMELCDSLVTWVQTF-NLSAP-----CSSYEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRN 78 (713)
T ss_dssp --HHHHHHHHHHTT----SS--------SHHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHC-CCCCC-----cCCHHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHH
Confidence 456677889999874 32221 2235689999999999999999753 244422 112 2256777777776
Q ss_pred HHH
Q psy6125 131 ARE 133 (242)
Q Consensus 131 c~~ 133 (242)
...
T Consensus 79 i~~ 81 (713)
T PF05622_consen 79 IKS 81 (713)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 31
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=47.03 E-value=17 Score=26.75 Aligned_cols=38 Identities=21% Similarity=0.456 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCC-CCCCCCChhhHHHHhhhcHHHHHHHH
Q psy6125 62 AQECLEWIREITGE-NIDTSGNMDNFYEILKDGTLLCKLVN 101 (242)
Q Consensus 62 ~~e~~~WI~~vlg~-~~~~~~~~~~f~~~LrDGvvLCkL~N 101 (242)
+.+|.+||.-.+.. .++ ....+|.....||--||.+.-
T Consensus 10 k~~V~~WL~~~~~~~~~~--~~~i~~~~F~MnG~~LC~ms~ 48 (74)
T cd08539 10 KYQVWEWLQHLLDTNQLD--ASCIPFQEFDINGEHLCSMSL 48 (74)
T ss_pred HHHHHHHHHHHHHHcCCC--cccccHHHcCCChHHHHccCH
Confidence 46799999877543 333 234589999999999998765
No 32
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=43.29 E-value=23 Score=26.29 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCC-CCCCCCChhhHHHHhhhcHHHHHHHH
Q psy6125 62 AQECLEWIREITGE-NIDTSGNMDNFYEILKDGTLLCKLVN 101 (242)
Q Consensus 62 ~~e~~~WI~~vlg~-~~~~~~~~~~f~~~LrDGvvLCkL~N 101 (242)
+.+|.+||.-.++. .++ ....+|.....||--||.+..
T Consensus 15 k~qVleWL~~~~e~n~~d--l~~v~f~~F~MnG~~LC~l~~ 53 (78)
T cd08537 15 KTQVLEWISYHVEKNKYD--ASSIDFSRCDMDGATLCNCAL 53 (78)
T ss_pred HHHHHHHHHHHHHhccCC--cccCCHHHhCCchHHHHccCH
Confidence 46799999988744 232 235679999999999998765
No 33
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=37.34 E-value=49 Score=28.03 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCch---hHHHHhhcchhhhhhhhcccccHHHHHHHHHHHHHH---------hCCCCC----
Q psy6125 15 QECLEWIREITGENIDTSGNMD---NFYEILKDGTLLCKTTINSKYSEELAQECLEWIREI---------TGENID---- 78 (242)
Q Consensus 15 ~e~~~WI~~~~g~~i~~~~~~~---~~~~~Lk~g~~Lc~~ki~~Kyd~e~~~e~~~WI~~v---------lg~~~~---- 78 (242)
.|+..|++-.+..-+++. +.+ +-| ||. .| .-.+++||.++ +|.+-+
T Consensus 68 keikTW~~La~~LGVepp-~~ek~qStQ------------Kvq-QY----aVRLKRWM~aMHVDAFFeYllg~~~~Y~t~ 129 (175)
T PF09441_consen 68 KEIKTWAQLALELGVEPP-DPEKGQSTQ------------KVQ-QY----AVRLKRWMRAMHVDAFFEYLLGKPHPYYTQ 129 (175)
T ss_pred hhHhHHHHHHHHhCCCCC-CcccccchH------------HHH-HH----HHHHHHHHHHhhHHHHHHHHhCCCCccccc
Confidence 478999999987667652 211 111 221 12 34567888875 344322
Q ss_pred CCCChhhHHHHhhhcHHHHH--HHHhhcCCC
Q psy6125 79 TSGNMDNFYEILKDGTLLCK--LVNDLKPNS 107 (242)
Q Consensus 79 ~~~~~~~f~~~LrDGvvLCk--L~N~l~Pg~ 107 (242)
.+.....+.+..||||.+=. .+.+|.|..
T Consensus 130 iP~~~~~~~~~~RDGV~~edDlalRAL~P~~ 160 (175)
T PF09441_consen 130 IPPDNPPVSEPGRDGVPLEDDLALRALLPQI 160 (175)
T ss_pred CCCCCCCccccccCCCchhHHHHHHHhcccc
Confidence 11333456677789987653 233555543
No 34
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=35.69 E-value=23 Score=25.33 Aligned_cols=38 Identities=24% Similarity=0.586 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhC-CCCCCCCChhhHHHHhhhcHHHHHHHH
Q psy6125 62 AQECLEWIREITG-ENIDTSGNMDNFYEILKDGTLLCKLVN 101 (242)
Q Consensus 62 ~~e~~~WI~~vlg-~~~~~~~~~~~f~~~LrDGvvLCkL~N 101 (242)
..+|.+|+.-+.. -.++. ...++...-.||--||.|-.
T Consensus 7 ~~~V~~Wl~w~~~e~~l~~--~~i~~~~F~m~Gk~LC~ms~ 45 (68)
T cd08757 7 KNDVLEWLQFVAEQNKLDA--ECISFQKFNIDGQTLCSMTE 45 (68)
T ss_pred HHHHHHHHHHHHHHcCCCC--CcCCccccCCCHHHHHcCCH
Confidence 4679999987654 34431 12345555889999998765
No 35
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=33.79 E-value=29 Score=24.57 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCC-CCCCCCChhhHHHHhhhcHHHHHHHH
Q psy6125 62 AQECLEWIREITGE-NIDTSGNMDNFYEILKDGTLLCKLVN 101 (242)
Q Consensus 62 ~~e~~~WI~~vlg~-~~~~~~~~~~f~~~LrDGvvLCkL~N 101 (242)
..+|..||.-+..+ +++ ..++...-.||.-||.|-.
T Consensus 7 ~~~V~~Wl~w~~~~f~L~----~~~~~~F~m~G~~Lc~ls~ 43 (66)
T cd08203 7 KEHVLQWLEWAVKEFSLP----PIDFSKFNMNGKELCLLTK 43 (66)
T ss_pred HHHHHHHHHHHHHhcCCC----CCChhhcCCCHHHHHhCCH
Confidence 46789999987653 443 1344445889999998765
No 36
>PF14043 WVELL: WVELL protein
Probab=32.59 E-value=1.2e+02 Score=22.33 Aligned_cols=41 Identities=15% Similarity=0.358 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhccccc--HHHHHHHHHHHHHH
Q psy6125 14 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYS--EELAQECLEWIREI 72 (242)
Q Consensus 14 ~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd--~e~~~e~~~WI~~v 72 (242)
..+++.|||-+-+ ||.... .|.--.|. .-.++-+++||+.-
T Consensus 20 ~~qArtWVElLWe----------DFEsTy--------AKAG~~Y~G~e~te~iV~qwI~~y 62 (75)
T PF14043_consen 20 YEQARTWVELLWE----------DFESTY--------AKAGRPYQGEEMTERIVRQWIENY 62 (75)
T ss_pred HHHHHHHHHHHHH----------HHHHHH--------HHcCCccCcHHHHHHHHHHHHHHH
Confidence 4579999998864 676533 23333344 22567799999875
No 37
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=29.71 E-value=33 Score=24.66 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHh
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVND 102 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~ 102 (242)
...|..|+.=+..+ |.. +..++...-.||--||.|-..
T Consensus 8 ~~~V~~WL~wa~~e-f~L--~~i~~~~F~mnGk~LC~ls~e 45 (68)
T cd08535 8 RDDVLQWLRWAENE-FSL--PPIDSNTFEMNGKALCLLTKE 45 (68)
T ss_pred HHHHHHHHHHHHHh-cCC--CCCChhccCCCHHHHhcCCHH
Confidence 36788898866542 322 124455667899999988653
No 38
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=29.27 E-value=28 Score=24.85 Aligned_cols=37 Identities=16% Similarity=0.461 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCC-CCCCCCChhhHHHHhhhcHHHHHHHHh
Q psy6125 62 AQECLEWIREITGE-NIDTSGNMDNFYEILKDGTLLCKLVND 102 (242)
Q Consensus 62 ~~e~~~WI~~vlg~-~~~~~~~~~~f~~~LrDGvvLCkL~N~ 102 (242)
..+|..|+.-+..+ .++. .++...-.||--||.|-..
T Consensus 7 ~~~V~~WL~w~~~ef~L~~----~~~~~F~m~Gk~LC~ls~e 44 (66)
T cd08536 7 REHVRTWLRWVSARYQLEV----VDLDKFLMNGKGLCLMSLE 44 (66)
T ss_pred HHHHHHHHHHHHHHhCCCC----CCccccCCCHHHHHcCCHH
Confidence 35788888876543 3431 2334445799999987653
No 39
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=29.01 E-value=30 Score=25.67 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=29.0
Q ss_pred cccHHHH--HHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHH
Q psy6125 56 KYSEELA--QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVN 101 (242)
Q Consensus 56 Kyd~e~~--~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N 101 (242)
..||..+ .+|.+||+-+..+ ++. ...++...-.||.-||.|-.
T Consensus 14 p~dP~~Wt~~~V~~Wl~w~~~e-f~L--~~~~~~~f~m~G~~Lc~ls~ 58 (82)
T smart00251 14 PADPQLWTEDHVLEWLEWAVKE-FSL--SPIDFSKFDMSGKELCSMSK 58 (82)
T ss_pred CCChhhCCHHHHHHHHHHHHHh-cCC--CCCCcccCCCCHHHHHcCCH
Confidence 3466654 6899999988754 332 23445555789999998755
No 40
>KOG3823|consensus
Probab=27.51 E-value=1.5e+02 Score=29.38 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHHhCC-------CCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcccccc
Q psy6125 65 CLEWIREITGE-------NIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINV 113 (242)
Q Consensus 65 ~~~WI~~vlg~-------~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~ 113 (242)
=+.||+.+... ..|...+.++|...=-.|-|+.-|.-.-.|+..+|-+.
T Consensus 337 Dk~wme~I~s~v~ssl~~E~p~FEGSedwIR~QFe~Yi~glL~tvk~~d~l~Kq~D 392 (630)
T KOG3823|consen 337 DKRWMEYIMSHVQSSLPKEDPEFEGSEDWIREQFEGYILGLLRTVKAPDALPKQKD 392 (630)
T ss_pred cHHHHHHHHHHhhhcCcccccCcCChHHHHHHHHHHHHHHHHHHhhccccccccch
Confidence 36899987532 22222466788777777899998988888888775443
No 41
>PF03221 HTH_Tnp_Tc5: Tc5 transposase DNA-binding domain; InterPro: IPR006600 This entry represents a DNA-binding helix-turn-helix domain found in the pogo family of transposable elements, the centromere protein Cenp-B, and yeast PCD2. There is extensive sequence similarity between Cenp-B and transposase proteins encoded by the pogo superfamily of transposable elements, which includes the human Tigger and Jerky elements []. The HTH domain is composed of three alpha-helices, with the second and third helices connected via a turn comprise the helix-turn-helix motif. Helix 3 is termed the recognition helix as it binds the DNA major groove, as in other HTHs []. This conserved DNA-binding domain is found in the following proteins: Cenp-B (major centromere autoantigen B or centromere protein B), which appears to organise arrays of centromere satellite DNA into a higher order structure that then direct centromere formation and kinetochore assembly in mammalian chromosomes. The N terminus of Cenp-B contains two DNA-binding HTH domains, which bind to adjacent major grooves of DNA: a psq-type HTH domain followed by a CenpB-type HTH domain, which together bind specifically to the Cenp-B box, which occurs in alpha-satellite DNA in human centromeres []. Pogo family transposable elements includes both Tigger and Jerky elements []. Pogo contains two open reading frames flanked by inverted repeats. The N-terminal region of pogo transposase contains a Cenp-B-type HTH DNA-binding domain []. Mammalian jerky protein, involved in epileptic seizures in mice []. PDC2 (Pyruvate DeCarboxylase 2), which is a transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes. PDC2 may be important for a high basal level of PDC gene expression or play a positive role in the autoregulation control of PDC1 and PDC5 [, ]. ; PDB: 1HLV_A 1IUF_A.
Probab=27.50 E-value=64 Score=21.68 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCCC
Q psy6125 10 SEELAQECLEWIREITGENIDT 31 (242)
Q Consensus 10 d~~~~~e~~~WI~~~~g~~i~~ 31 (242)
.|++|..+.+||.......++.
T Consensus 1 ~~~~E~~L~~wi~~~~~~g~~v 22 (66)
T PF03221_consen 1 YPELEKALVEWIKRMRRKGFPV 22 (66)
T ss_dssp -HHHHHHHHHHHHHHCGCT---
T ss_pred CHHHHHHHHHHHHHHHHcCCCC
Confidence 3789999999999997766655
No 42
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=26.42 E-value=42 Score=24.58 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCC-CCCCCCChhhHHHH-hhhcHHHHHHHH
Q psy6125 62 AQECLEWIREITGE-NIDTSGNMDNFYEI-LKDGTLLCKLVN 101 (242)
Q Consensus 62 ~~e~~~WI~~vlg~-~~~~~~~~~~f~~~-LrDGvvLCkL~N 101 (242)
...|+.|+.=+..+ .++ ..++... -.||.-||.|-.
T Consensus 10 ~~~V~~WL~Wa~~ef~L~----~i~~~~F~~m~Gk~LC~lt~ 47 (75)
T cd08531 10 REHVRQWLEWAVKEYGLQ----DVDVSRFQNIDGKELCKMTK 47 (75)
T ss_pred HHHHHHHHHHHHHHcCCC----CCChhhccCCChHHHHcCCH
Confidence 35788888766543 332 2345565 678888887754
No 43
>KOG0035|consensus
Probab=26.00 E-value=48 Score=35.06 Aligned_cols=87 Identities=25% Similarity=0.437 Sum_probs=62.2
Q ss_pred HHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHHH-cCCCCcCcc
Q psy6125 64 ECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVARE-MGVPAQETF 142 (242)
Q Consensus 64 e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~~-lGv~~~~lF 142 (242)
.+.-|-..++...- ..+..+|...-+||..+|.+++...|..|..+..-+ +=..++|++.-...+.. +|++ .+.
T Consensus 146 gllLwcq~~Ta~y~--~v~v~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~lt-~~~~~~n~~~A~~iAek~l~i~--r~l 220 (890)
T KOG0035|consen 146 GLLLWCQRKTAPYS--NVNVQNFHTSWKDGLAFCALIHRHRPDLIDQYDKLT-KQDPVENLNLAFDIAEKFLGIP--RLL 220 (890)
T ss_pred hhhhheecccCCcc--ccccccceecccchHHHHHHHHhcChhhhhhhhhcC-ccchhHHhhhhhhhhhhcCCcc--ccc
Confidence 34455555543322 245679999999999999999999999887554222 22468999988888876 7776 477
Q ss_pred ccchhhcccChhH
Q psy6125 143 QTVDLWERQNLNS 155 (242)
Q Consensus 143 ~t~DL~E~kn~~~ 155 (242)
++.|..+-....+
T Consensus 221 d~ed~~~~~~pde 233 (890)
T KOG0035|consen 221 DAEDIVEAAIPDE 233 (890)
T ss_pred CccccccCCCCch
Confidence 8999888755443
No 44
>KOG2996|consensus
Probab=25.63 E-value=67 Score=32.72 Aligned_cols=44 Identities=23% Similarity=0.506 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCCCCC-----CCCchhHHHHhhcchhhhhhhhccccc
Q psy6125 14 AQECLEWIREITGENIDT-----SGNMDNFYEILKDGTLLCKTTINSKYS 58 (242)
Q Consensus 14 ~~e~~~WI~~~~g~~i~~-----~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd 58 (242)
=.++.+|+...-=.+... ..-+-+|...|+||+.||+ ++|+...
T Consensus 4 WrqCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCq-LlnnL~p 52 (865)
T KOG2996|consen 4 WRQCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQ-LLNNLVP 52 (865)
T ss_pred HHHHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHH-HHhhcCC
Confidence 346778887654322222 1233468999999999995 6665443
No 45
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.26 E-value=1.3e+02 Score=24.26 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=27.2
Q ss_pred HHHHHH-HHcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 126 CFLDVA-REMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 126 ~FL~ac-~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
.||..- -.+|+|...+....+--...|+.+|+.||+.|=..-
T Consensus 5 ~yiN~~L~s~G~~~~~~~~~~~~~~~~~~~~vin~i~~Ll~~~ 47 (151)
T PF11559_consen 5 EYINQQLLSRGYPSDGLLFDSAEESEDNDVRVINCIYDLLQQR 47 (151)
T ss_pred HHHHHHHHHCCCCCCCccCcccccccccHHHHHHHHHHHHHHH
Confidence 334333 578998875544433112458999999999987544
No 46
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=24.33 E-value=43 Score=24.62 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=27.1
Q ss_pred ccHHH--HHHHHHHHHHHhCC-CCCCCCChhhHHHHhhhcHHHHHHHH
Q psy6125 57 YSEEL--AQECLEWIREITGE-NIDTSGNMDNFYEILKDGTLLCKLVN 101 (242)
Q Consensus 57 yd~e~--~~e~~~WI~~vlg~-~~~~~~~~~~f~~~LrDGvvLCkL~N 101 (242)
.||.. ...|.+|+.-+..+ +++ . ++...-.||.-||.|-.
T Consensus 8 ~DP~~Ws~~~V~~WL~w~~~ef~L~----~-~~~~F~mnG~~LC~ls~ 50 (76)
T cd08532 8 PDPYQWSPANVQKWLLWTEHQYRLP----P-PPRCFELNGKDLCALSE 50 (76)
T ss_pred CChhhcCHHHHHHHHHHHHHHhCCC----C-chhcCCCCHHHHHcCCH
Confidence 35553 36789999876543 453 2 55566889999998765
No 47
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=23.59 E-value=54 Score=24.31 Aligned_cols=38 Identities=21% Similarity=0.476 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCC-CCCCCCChhhHHHHhhhcHHHHHHHH
Q psy6125 62 AQECLEWIREITGE-NIDTSGNMDNFYEILKDGTLLCKLVN 101 (242)
Q Consensus 62 ~~e~~~WI~~vlg~-~~~~~~~~~~f~~~LrDGvvLCkL~N 101 (242)
...|++||.=+..+ +++ +...+|...-.||--||.+..
T Consensus 12 ~~~V~~WL~Wav~ef~L~--~~~i~~~~f~m~Gk~LC~ms~ 50 (78)
T cd08538 12 KRHVWEWLQFCCDQYKLD--ANCISFCHFNISGLQLCSMTQ 50 (78)
T ss_pred HHHHHHHHHHHHHHcCCC--ccccchhhcCCCHHHHHcCCH
Confidence 35788999876543 343 122467777899999998865
No 48
>PF03494 Beta-APP: Beta-amyloid peptide (beta-APP); InterPro: IPR013803 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents the amyloid-beta peptide (A-beta), which originates as a breakdown product from the cleavage of amyloid-beta precursor protein (APP, or A4), an integral, glycosylated membrane brain protein. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 2LMQ_F 3JTI_B 2LMO_B 3MOQ_D 2LNQ_E 2LMP_G 2BEG_B 1AMC_A 3OW9_B 3U0T_F ....
Probab=22.49 E-value=36 Score=21.62 Aligned_cols=11 Identities=55% Similarity=0.616 Sum_probs=8.1
Q ss_pred ccccCCCCCcC
Q psy6125 222 QYGSNKGANQS 232 (242)
Q Consensus 222 q~g~~~~asq~ 232 (242)
.+|+||||--.
T Consensus 20 DvgSNKGAIIG 30 (39)
T PF03494_consen 20 DVGSNKGAIIG 30 (39)
T ss_dssp CCSSSSSEEEE
T ss_pred HcCCCCceEEE
Confidence 47999998543
No 49
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=22.16 E-value=32 Score=25.30 Aligned_cols=42 Identities=26% Similarity=0.552 Sum_probs=25.1
Q ss_pred cHHH--HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHh
Q psy6125 58 SEEL--AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVND 102 (242)
Q Consensus 58 d~e~--~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~ 102 (242)
||.. ..+|.+||.-+..+ ++. ...++...=.||.-||.|-..
T Consensus 16 DP~~Wt~~~V~~Wl~w~~~~-f~l--~~~~~~~f~~~G~~Lc~lt~e 59 (84)
T PF02198_consen 16 DPRLWTKEDVLQWLRWVVRE-FDL--PAIDFSRFNMNGRELCSLTKE 59 (84)
T ss_dssp SGGG--HHHHHHHHHHHHHH-TT---SSCHGGGGTS-HHHHHHSHHH
T ss_pred ChhhCCHHHHHHHHHHHHHh-cCC--CcCchhccCCCHHHHHHcCHH
Confidence 4543 46899999866543 321 123455556789999987654
No 50
>KOG1271|consensus
Probab=21.60 E-value=88 Score=27.46 Aligned_cols=89 Identities=17% Similarity=0.314 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHHHhCC-CCCCCCChhhHH-HHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHHHcC
Q psy6125 58 SEELAQECLEWIREITGE-NIDTSGNMDNFY-EILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAREMG 135 (242)
Q Consensus 58 d~e~~~e~~~WI~~vlg~-~~~~~~~~~~f~-~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~~lG 135 (242)
..+.++.+..|+.+.... .+. .+.+... -..-||-+|-+|++.=.|+.+.-+.-+.-+ |..--..+++=|
T Consensus 44 g~~ae~riv~wl~d~~~~~rv~--~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~A------V~LA~niAe~~~ 115 (227)
T KOG1271|consen 44 GEDAEERIVDWLKDLIVISRVS--KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKA------VELAQNIAERDG 115 (227)
T ss_pred CCcHHHHHHHHHHhhhhhhhhc--ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHH------HHHHHHHHHhcC
Confidence 456788899999987661 111 1121122 256689999999999777754433322222 222333456677
Q ss_pred CCCcCccccchhhcccChh
Q psy6125 136 VPAQETFQTVDLWERQNLN 154 (242)
Q Consensus 136 v~~~~lF~t~DL~E~kn~~ 154 (242)
++..--|+..|+....+..
T Consensus 116 ~~n~I~f~q~DI~~~~~~~ 134 (227)
T KOG1271|consen 116 FSNEIRFQQLDITDPDFLS 134 (227)
T ss_pred CCcceeEEEeeccCCcccc
Confidence 7776678888888765433
No 51
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=21.47 E-value=37 Score=22.89 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCCCcCccccch
Q psy6125 124 INCFLDVAREMGVPAQETFQTVD 146 (242)
Q Consensus 124 I~~FL~ac~~lGv~~~~lF~t~D 146 (242)
+..+.+.|+.+||+..++|...|
T Consensus 41 ~~~l~~i~~~~~v~~~~l~~~~~ 63 (64)
T PF12844_consen 41 VSTLKKIAEALGVSLDELFDGED 63 (64)
T ss_dssp HHHHHHHHHHHTS-HHHHCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHhccCC
Confidence 57789999999999988887654
No 52
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=20.62 E-value=64 Score=24.46 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=27.3
Q ss_pred ccHHHH--HHHHHHHHHHhCC-CCCCCCChhhHHHHhhhcHHHHHHHH
Q psy6125 57 YSEELA--QECLEWIREITGE-NIDTSGNMDNFYEILKDGTLLCKLVN 101 (242)
Q Consensus 57 yd~e~~--~e~~~WI~~vlg~-~~~~~~~~~~f~~~LrDGvvLCkL~N 101 (242)
.||..+ ..|..|+.=+..+ .++ ..++...-.||.-||.|-.
T Consensus 17 ~DP~~Wt~~~V~~WL~Wa~~ef~L~----~v~~~~F~m~Gk~LC~Ls~ 60 (89)
T cd08534 17 YDPMEWTEDQVLHWVVWAVKEFSLT----DIDLSDWNITGRELCSLTQ 60 (89)
T ss_pred CChHHcCHHHHHHHHHHHHHHcCCC----CCChhhcCCCHHHHhcCCH
Confidence 466654 6789999876544 332 2245555789999998755
No 53
>KOG3355|consensus
Probab=20.46 E-value=1.3e+02 Score=25.82 Aligned_cols=8 Identities=38% Similarity=0.916 Sum_probs=3.9
Q ss_pred HHHHHHhh
Q psy6125 96 LCKLVNDL 103 (242)
Q Consensus 96 LCkL~N~l 103 (242)
||++-|.+
T Consensus 141 ~C~vHN~V 148 (177)
T KOG3355|consen 141 LCHVHNKV 148 (177)
T ss_pred HHHHHHHH
Confidence 45555544
No 54
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.30 E-value=2e+02 Score=17.72 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCCCCC-ChhhHHHHhhh
Q psy6125 62 AQECLEWIREITGENIDTSG-NMDNFYEILKD 92 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~-~~~~f~~~LrD 92 (242)
..+++.|+++. |.+.+... ..+++.+.+++
T Consensus 6 ~~~L~~wL~~~-gi~~~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 6 DSDLKSWLKSH-GIPVPKSAKTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHHc-CCCCCCCCCCHHHHHHHHHH
Confidence 35788999984 66665444 55666665553
Done!