Query psy6125
Match_columns 242
No_of_seqs 253 out of 1063
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 18:16:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wyn_A Calponin-2; CH domain, 100.0 4.3E-44 1.5E-48 293.6 11.1 139 50-210 7-145 (146)
2 2rr8_A Iqgap1 protein; F-actin 100.0 2.3E-44 7.8E-49 307.0 8.7 152 51-229 17-182 (190)
3 1wym_A Transgelin-2; CH domain 100.0 7.3E-42 2.5E-46 283.0 13.7 143 50-206 7-153 (155)
4 1p5s_A RAS GTPase-activating-l 100.0 4.5E-41 1.5E-45 289.2 10.3 156 46-237 40-198 (203)
5 1wyp_A Calponin 1; CH domain, 100.0 7.4E-41 2.5E-45 271.4 10.8 130 50-203 7-136 (136)
6 1p2x_A RNG2 protein, RAS GTPas 100.0 2E-40 6.8E-45 275.4 12.7 139 61-225 12-155 (159)
7 1ujo_A Transgelin; CH domain, 100.0 5E-40 1.7E-44 268.9 13.3 134 54-202 3-142 (144)
8 3i6x_A P195, RAS GTPase-activa 100.0 2.8E-37 9.5E-42 263.7 11.8 141 51-217 39-189 (193)
9 1h67_A Calponin alpha; cytoske 100.0 4.1E-36 1.4E-40 234.5 7.6 103 60-167 3-105 (108)
10 1wyr_A RHO guanine nucleotide 100.0 3.7E-32 1.2E-36 216.3 10.2 106 59-167 5-114 (121)
11 2l3g_A RHO guanine nucleotide 100.0 2.1E-31 7.3E-36 213.3 10.2 106 59-167 11-121 (126)
12 3ky9_A Proto-oncogene VAV; cal 99.9 2.7E-26 9.1E-31 223.3 9.9 108 60-167 5-122 (587)
13 2yrn_A Neuron navigator 2 isof 99.8 2.4E-18 8.1E-23 137.6 10.0 113 52-167 10-123 (129)
14 1pxy_A Fimbrin-like protein; c 99.6 1.5E-15 5.1E-20 145.7 9.9 98 55-153 2-109 (506)
15 1aoa_A T-fimbrin; actin-bindin 99.6 7.4E-15 2.5E-19 130.7 12.5 114 51-166 15-137 (275)
16 1rt8_A Fimbrin; filamentous ac 99.5 4.3E-14 1.5E-18 135.8 12.2 113 54-167 6-131 (513)
17 1wku_A Alpha-actinin 3; calpon 99.5 1.2E-14 4E-19 128.3 7.4 110 53-167 20-129 (254)
18 2qjz_A Microtubule-associated 99.4 1.3E-13 4.4E-18 109.5 7.0 95 62-166 7-104 (123)
19 1wyo_A Protein EB3, microtubul 99.4 1E-13 3.5E-18 114.4 5.4 102 56-167 18-122 (159)
20 2wa7_A Filamin-B; disease muta 99.4 5E-13 1.7E-17 117.2 8.0 110 54-168 14-125 (245)
21 1sh5_A Plectin 1, PLTN, PCN; a 99.3 2.3E-12 7.9E-17 112.7 8.6 110 55-167 7-118 (245)
22 1dxx_A Dystrophin; structural 99.3 1.8E-12 6.2E-17 113.6 7.7 110 53-167 9-118 (246)
23 3f7p_A Plectin-1; plakin, hemi 99.3 4.8E-12 1.6E-16 114.1 7.6 111 52-168 65-175 (296)
24 1wym_A Transgelin-2; CH domain 99.1 1.3E-10 4.4E-15 95.5 7.8 55 1-56 6-61 (155)
25 1rt8_A Fimbrin; filamentous ac 99.1 2.5E-10 8.5E-15 109.6 10.9 99 62-167 287-393 (513)
26 1sjj_A Actinin; 3-helix bundle 99.1 8.4E-11 2.9E-15 118.0 5.9 110 53-167 1-110 (863)
27 1wyp_A Calponin 1; CH domain, 99.0 2.2E-10 7.7E-15 92.2 3.4 53 1-60 6-58 (136)
28 3hoc_A Filamin-A; calponin hom 99.0 1.1E-09 3.9E-14 97.5 8.0 111 54-169 41-153 (272)
29 1wyn_A Calponin-2; CH domain, 98.9 3.2E-10 1.1E-14 92.3 2.9 49 1-55 6-54 (146)
30 1aoa_A T-fimbrin; actin-bindin 98.9 6.4E-09 2.2E-13 92.3 10.5 147 3-156 15-266 (275)
31 2vzc_A Alpha-parvin; membrane, 98.8 7.2E-09 2.5E-13 82.8 8.0 99 62-166 24-126 (131)
32 1ujo_A Transgelin; CH domain, 98.8 2.1E-09 7.3E-14 87.2 3.3 49 6-55 3-52 (144)
33 1wku_A Alpha-actinin 3; calpon 98.7 2.5E-08 8.7E-13 87.6 8.5 153 5-167 20-244 (254)
34 1pxy_A Fimbrin-like protein; c 98.7 3.2E-08 1.1E-12 94.7 9.8 99 61-166 277-379 (506)
35 1sh5_A Plectin 1, PLTN, PCN; a 98.5 1.8E-07 6.1E-12 81.5 7.1 151 6-167 6-236 (245)
36 4b7l_A Filamin-B; structural p 98.5 2.1E-07 7.3E-12 85.3 7.7 104 61-169 18-123 (347)
37 2wa7_A Filamin-B; disease muta 98.5 3.5E-07 1.2E-11 79.8 8.5 135 5-151 13-227 (245)
38 2rr8_A Iqgap1 protein; F-actin 98.5 3.3E-08 1.1E-12 83.6 1.2 54 1-60 15-68 (190)
39 1p5s_A RAS GTPase-activating-l 98.3 1.3E-07 4.3E-12 80.9 2.1 54 2-60 44-98 (203)
40 3f7p_A Plectin-1; plakin, hemi 98.3 8.3E-07 2.8E-11 79.9 6.6 152 3-166 64-291 (296)
41 1dxx_A Dystrophin; structural 98.3 9.2E-07 3.1E-11 77.1 6.5 154 5-166 9-238 (246)
42 3i6x_A P195, RAS GTPase-activa 98.3 1.7E-07 5.7E-12 79.6 1.5 53 2-60 38-90 (193)
43 1h67_A Calponin alpha; cytoske 98.2 1.7E-07 5.7E-12 72.3 0.2 42 11-59 2-43 (108)
44 1wjo_A T-plastin; CH domain, a 98.2 2.2E-06 7.4E-11 67.9 6.4 89 62-154 9-101 (124)
45 1sjj_A Actinin; 3-helix bundle 98.0 2.3E-06 7.8E-11 85.8 3.0 150 5-166 1-224 (863)
46 1p2x_A RNG2 protein, RAS GTPas 98.0 3.7E-06 1.3E-10 69.1 3.7 42 13-59 12-53 (159)
47 2d89_A EHBP1 protein; all alph 97.9 5.1E-05 1.7E-09 59.3 8.9 100 62-167 11-112 (119)
48 1wyl_A NEDD9 interacting prote 97.8 8.6E-05 2.9E-09 57.8 8.6 99 62-166 9-108 (116)
49 2d87_A Smoothelin splice isofo 97.7 0.0002 6.9E-09 56.7 9.8 100 62-167 9-111 (128)
50 1wyq_A Spectrin beta chain, br 97.6 0.0004 1.4E-08 54.8 9.1 100 62-167 9-110 (127)
51 2d88_A Protein mical-3; all al 97.5 0.00026 8.8E-09 55.4 7.5 100 62-167 11-113 (121)
52 2r8u_A Microtubule-associated 97.5 0.00017 5.9E-09 63.8 7.2 97 61-167 16-115 (268)
53 1bkr_A Spectrin beta chain; fi 97.5 0.00031 1.1E-08 54.0 7.3 98 62-165 5-104 (109)
54 1wyr_A RHO guanine nucleotide 97.4 4.1E-05 1.4E-09 60.1 1.6 48 10-59 4-54 (121)
55 1bhd_A Utrophin; calponin homo 97.4 0.00025 8.4E-09 55.3 5.9 98 61-166 9-110 (118)
56 2l3g_A RHO guanine nucleotide 97.4 7.6E-05 2.6E-09 59.0 2.7 48 11-60 11-61 (126)
57 4abo_I MAL3, microtubule integ 97.2 0.00056 1.9E-08 55.3 6.4 96 61-167 7-105 (145)
58 4b7l_A Filamin-B; structural p 97.1 0.0015 5.2E-08 59.6 8.6 82 62-151 142-224 (347)
59 3hoc_A Filamin-A; calponin hom 97.1 0.001 3.6E-08 58.9 6.9 81 62-150 172-253 (272)
60 2qjx_A Protein BIM1; calponin 97.0 0.0024 8.2E-08 50.5 7.5 96 61-167 11-109 (127)
61 2yrn_A Neuron navigator 2 isof 96.9 0.00045 1.5E-08 54.3 3.2 48 2-50 8-55 (129)
62 1wyo_A Protein EB3, microtubul 95.8 0.0026 9E-08 52.1 1.6 101 8-134 18-121 (159)
63 2qjz_A Microtubule-associated 95.6 0.0077 2.6E-07 47.3 3.3 35 15-57 8-42 (123)
64 3ky9_A Proto-oncogene VAV; cal 94.4 0.016 5.6E-07 55.8 2.7 61 11-72 4-85 (587)
65 2ee7_A Sperm flagellar protein 94.4 0.11 3.8E-06 40.9 6.9 97 55-160 10-114 (127)
66 1wix_A HOOK homolog 1, RSGI RU 72.5 5.6 0.00019 32.1 5.3 69 59-133 8-83 (164)
67 2d87_A Smoothelin splice isofo 64.5 2.1 7.2E-05 33.3 1.1 44 13-60 8-51 (128)
68 2d89_A EHBP1 protein; all alph 63.7 2.8 9.5E-05 32.0 1.6 43 14-60 11-53 (119)
69 1bhd_A Utrophin; calponin homo 63.6 2.9 0.0001 31.9 1.7 45 12-60 8-52 (118)
70 1bkr_A Spectrin beta chain; fi 63.3 2.9 9.9E-05 31.4 1.6 44 13-60 4-47 (109)
71 1wyl_A NEDD9 interacting prote 57.2 2.6 9E-05 32.0 0.4 44 13-60 8-51 (116)
72 2d88_A Protein mical-3; all al 53.3 2.8 9.6E-05 32.1 -0.0 43 14-60 11-53 (121)
73 1wyq_A Spectrin beta chain, br 45.4 4.2 0.00014 31.4 -0.1 43 14-60 9-51 (127)
74 4abo_I MAL3, microtubule integ 36.8 23 0.00078 28.2 2.9 96 14-134 8-104 (145)
75 2qjx_A Protein BIM1; calponin 30.8 40 0.0014 26.1 3.4 95 15-134 13-108 (127)
76 3zyl_A Phosphatidylinositol-bi 30.6 26 0.00087 30.4 2.5 23 118-140 248-270 (271)
77 2vzc_A Alpha-parvin; membrane, 30.0 30 0.001 26.6 2.6 32 15-50 25-57 (131)
78 2ee7_A Sperm flagellar protein 26.7 44 0.0015 25.8 2.9 48 6-60 9-56 (127)
79 1sv0_C Modulator of the activi 26.0 37 0.0013 24.0 2.2 36 62-101 16-54 (82)
80 2kwz_A Protease NS2-3; NS2 dom 26.0 49 0.0017 20.6 2.5 28 43-74 2-29 (40)
81 1hlv_A CENP-B, major centromer 24.0 1.6E+02 0.0055 21.3 5.8 73 5-78 4-94 (131)
82 2r8u_A Microtubule-associated 23.9 53 0.0018 28.6 3.3 96 15-134 18-114 (268)
83 4fjo_A DNA repair protein REV1 21.5 1.3E+02 0.0043 21.8 4.5 55 11-76 12-66 (97)
84 2h7b_A Core-binding factor, ML 20.2 1.4E+02 0.0047 22.4 4.4 35 53-91 19-53 (105)
No 1
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=100.00 E-value=4.3e-44 Score=293.65 Aligned_cols=139 Identities=34% Similarity=0.511 Sum_probs=129.7
Q ss_pred hhhhcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHH
Q psy6125 50 KTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLD 129 (242)
Q Consensus 50 ~~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ 129 (242)
++|++++|++++++++++||+++++++++ ++|.++|+|||+||+|+|++.|++|++|+.++++|+++|||+.||+
T Consensus 7 ~~k~~~ky~~~~~~e~~~WIe~~l~~~i~-----~~l~~~L~DGvvLCkL~N~l~P~~v~kin~~~~~f~~~eNI~~FL~ 81 (146)
T 1wyn_A 7 GNRLLSKYDPQKEAELRTWIEGLTGLSIG-----PDFQKGLKDGTILCTLMNKLQPGSVPKINRSMQNWHQLENLSNFIK 81 (146)
T ss_dssp CCCCCSCCCTTHHHHHHHHHHHHHCCCCC-----SCHHHHHHTTSHHHHHHHHHCTTSCSCCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHHHhCCCCc-----HHHHHHHccHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHH
Confidence 46899999999999999999999999983 5899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcCccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCCCCCCCcccccccccccH
Q psy6125 130 VAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEADKNVRHFTE 209 (242)
Q Consensus 130 ac~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~k~~~~~~r~ft~ 209 (242)
+|+.+|||+.++|+|+||||++|+++|+.||++|++.+ .....+++|.+|||+|++|+|+|||
T Consensus 82 a~~~~Gv~~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a-----------------~~~g~~~~p~~g~k~a~~~~r~f~e 144 (146)
T 1wyn_A 82 AMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKA-----------------KTKGLQSGVDIGVKYSEKQERSGPS 144 (146)
T ss_dssp HHHHHTCCSSSCCCHHHHHTCSCSHHHHHHHHHHHHHH-----------------GGGTSCCCSCCCCCCCCCCCCCSSC
T ss_pred HHHHcCCCcccccChhHHHhcCChHHHHHHHHHHHHHH-----------------HhCCCCCCCccceeccccCCCCCCC
Confidence 99999999999999999999999999999999999998 1112237999999999999999998
Q ss_pred H
Q psy6125 210 E 210 (242)
Q Consensus 210 ~ 210 (242)
+
T Consensus 145 ~ 145 (146)
T 1wyn_A 145 S 145 (146)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=100.00 E-value=2.3e-44 Score=306.97 Aligned_cols=152 Identities=26% Similarity=0.448 Sum_probs=137.1
Q ss_pred hhhcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--ccc--------ccCCccchh
Q psy6125 51 TTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKI--------NVSTMAFKC 120 (242)
Q Consensus 51 ~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki--------~~~~~~f~~ 120 (242)
.+++.+|+++. +++++||++++|++++ +.++|.++|+|||+||+|+|++.|++| ++| +.++++|++
T Consensus 17 ~k~a~~y~~~~-~e~~~WIe~~lg~~lp---~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~ 92 (190)
T 2rr8_A 17 QNVAYEYLCHL-EEAKRWMEACLGEDLP---PTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRH 92 (190)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHHSCCCCC---CHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSST
T ss_pred HHHHHhhcHHH-HHHHHHHHHHhCCCCC---ChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchH
Confidence 56899999988 9999999999999985 457999999999999999999999998 576 446789999
Q ss_pred hhhHHHHHHHHHHcCCCCcCccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCCCCCCCccc
Q psy6125 121 MENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEA 200 (242)
Q Consensus 121 ~ENI~~FL~ac~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~k~~ 200 (242)
||||++||++|+.||||+.++|+|+||||++|+++|+.||++|++.++ .++ +||+.+
T Consensus 93 ~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn~~~Vi~cL~aL~~~a~--------------------~~g---~~P~~~ 149 (190)
T 2rr8_A 93 TDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLF--------------------KLG---LAPQIQ 149 (190)
T ss_dssp HHHHHHHHHGGGGTTCCSTTCCCHHHHTCTTCCHHHHHHHHHHHHHHH--------------------HSS---CCCCCC
T ss_pred HHHHHHHHHHHHHcCCCccccCCHHHHHhcCCHHHHHHHHHHHHHHHH--------------------HCC---CCCCcc
Confidence 999999999999999999999999999999999999999999999991 121 467777
Q ss_pred cc-ccccccHHHhhcccce---eeeccccCCCC
Q psy6125 201 DK-NVRHFTEEQLKAGQTV---ISLQYGSNKGA 229 (242)
Q Consensus 201 ~~-~~r~ft~~~l~~~~~~---~~~q~g~~~~a 229 (242)
+. |+|+||||||++|+.+ ||+|||++...
T Consensus 150 ~~~~~r~Fteeql~~~~~~l~~~glqm~~f~~~ 182 (190)
T 2rr8_A 150 DLYGKVDFTEEEINNMKTELEKYGIQMPAFSKI 182 (190)
T ss_dssp CCTTSSCCCHHHHHHHHHHHHHSCCCCCCGGGC
T ss_pred ccccCCCCCHHHHHHHHHHHHhhccCCCcchhH
Confidence 75 9999999999999999 99999998654
No 3
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=7.3e-42 Score=282.95 Aligned_cols=143 Identities=38% Similarity=0.612 Sum_probs=127.3
Q ss_pred hhhhcccccHHHHHHHHHHHHHHhCCCCCCC-CChhhHHHHhhhcHHHHHHHHhhcC---CCccccccCCccchhhhhHH
Q psy6125 50 KTTINSKYSEELAQECLEWIREITGENIDTS-GNMDNFYEILKDGTLLCKLVNDLKP---NSVKKINVSTMAFKCMENIN 125 (242)
Q Consensus 50 ~~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~-~~~~~f~~~LrDGvvLCkL~N~l~P---g~i~ki~~~~~~f~~~ENI~ 125 (242)
++|+++||++++++++++||+++++++++.+ ++.++|.++|+|||+||+|+|++.| ++|++|+.++++|++||||+
T Consensus 7 ~~k~~~ky~~~~e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn~~~~~F~~~eNI~ 86 (155)
T 1wym_A 7 GQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQIS 86 (155)
T ss_dssp CSSCCCSCCHHHHHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCCCCCCHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcCcccCCCccccHHHHHH
Confidence 4789999999999999999999999999743 3458999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHcCCCCcCccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCCCCCCCcccccccc
Q psy6125 126 CFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEADKNVR 205 (242)
Q Consensus 126 ~FL~ac~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~k~~~~~~r 205 (242)
.||++|+.||||+.++|+|+||||++|+++|+.||++|+++++..+ .++..|.|.+|||+|++|+|
T Consensus 87 ~FL~ac~~~Gv~~~~lF~t~DL~e~kn~~~Vi~cL~aL~~~a~~~~--------------~gp~~g~p~~~~k~a~~n~r 152 (155)
T 1wym_A 87 QFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARD--------------DGLFSGDPNWFPKKSKESGP 152 (155)
T ss_dssp HHHHHHHHHTCCTTTCCCHHHHHTCSCHHHHHHHHHHHHHHHTTCS--------------SSCCCSCSSSSCCCCCCCCS
T ss_pred HHHHHHHHcCCCccccCChHHHHhcCCHHHHHHHHHHHHHHHHHCC--------------CCCcCCCCCCCCcccccCCC
Confidence 9999999999999999999999999999999999999999992110 02334445555999999999
Q ss_pred c
Q psy6125 206 H 206 (242)
Q Consensus 206 ~ 206 (242)
+
T Consensus 153 ~ 153 (155)
T 1wym_A 153 S 153 (155)
T ss_dssp S
T ss_pred C
Confidence 6
No 4
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=100.00 E-value=4.5e-41 Score=289.22 Aligned_cols=156 Identities=25% Similarity=0.431 Sum_probs=135.6
Q ss_pred hhhhhhhhcccccH-HHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccc-cCCccchhhhh
Q psy6125 46 TLLCKTTINSKYSE-ELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKIN-VSTMAFKCMEN 123 (242)
Q Consensus 46 ~~Lc~~ki~~Kyd~-e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~-~~~~~f~~~EN 123 (242)
..-.++++..+|+. +.++++++||+++++++++ +.++|.++|+|||+||+|+|+|.|++|++|+ .++++|+++||
T Consensus 40 ~~d~~rk~~~~ye~l~~~~e~~~WIe~~l~~~l~---~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f~~~eN 116 (203)
T 1p5s_A 40 LAAKQRETLQAYDYLCRVDEAKKWIEECLGTDLG---PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDN 116 (203)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHTSCCC---CGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCCCHHHH
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCC---ChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcchHHHH
Confidence 45566788999998 7899999999999999986 4679999999999999999999999999996 67889999999
Q ss_pred HHHHHHHHHHcCCCCcCccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCCCCCCCcccc-c
Q psy6125 124 INCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEAD-K 202 (242)
Q Consensus 124 I~~FL~ac~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~k~~~-~ 202 (242)
|+.||++|+.||||+.++|+|+||||++|+++|+.||++|++.+. . ++ +||+.+. .
T Consensus 117 I~~FL~ac~~~Gvp~~~lF~t~DL~e~kn~~~Vi~~L~aL~~~a~-----------------~-~g-----~~p~l~~l~ 173 (203)
T 1p5s_A 117 INKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLS-----------------M-QD-----LAPPLIKSD 173 (203)
T ss_dssp HHHHHHHHHHTTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHH-----------------H-TT-----SSCCCCCCC
T ss_pred HHHHHHHHHHcCCCcccccCHHHHHhcCCHHHHHHHHHHHHHHHh-----------------h-cC-----CCCchhhhc
Confidence 999999999999999999999999999999999999999999981 0 12 3455544 5
Q ss_pred ccccccHHHhhcccceeeeccccCCCCCcCCCCCC
Q psy6125 203 NVRHFTEEQLKAGQTVISLQYGSNKGANQSGINFG 237 (242)
Q Consensus 203 ~~r~ft~~~l~~~~~~~~~q~g~~~~asq~g~~~g 237 (242)
++|+||||||++ +|++++|+||++.
T Consensus 174 ~~~~Fseeql~~----------~n~~l~q~G~~~~ 198 (203)
T 1p5s_A 174 ENLSFTDEDVSI----------IVRRLRQSNVILP 198 (203)
T ss_dssp TTCCCCHHHHHH----------HHHHHHHCCCCCC
T ss_pred ccCCCCHHHHHH----------HHHHHHHcCCCCC
Confidence 899999999999 8899999998743
No 5
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=100.00 E-value=7.4e-41 Score=271.43 Aligned_cols=130 Identities=35% Similarity=0.594 Sum_probs=121.2
Q ss_pred hhhhcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHH
Q psy6125 50 KTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLD 129 (242)
Q Consensus 50 ~~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ 129 (242)
++|++++|++++++++++||+++++++++ ++|.++|+|||+||+|+|++.|++|++|+.++++|+++|||+.||+
T Consensus 7 ~~k~~~ky~~~~~~e~~~WIe~~l~~~~~-----~~l~~~L~DGvvLCkL~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~ 81 (136)
T 1wyp_A 7 GNKLAQKYDHQREQELREWIEGVTGRRIG-----NNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIK 81 (136)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHTCCCCC-----SCTTHHHHTSHHHHHHHHHHSTTSSSCCCCSSCSHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHHHhCCCCc-----HHHHHHHccHHhHHHHHHhhCCCCcccccccccchHHHHHHHHHHH
Confidence 46899999999999999999999999983 5899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcCccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCCCCCCCcccccc
Q psy6125 130 VAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEADKN 203 (242)
Q Consensus 130 ac~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~k~~~~~ 203 (242)
+|+.+|||+.++|+|+||||++|+++|+.||++|++.++ . .+ .||.+|||+|+++
T Consensus 82 a~~~~Gv~~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a~-----------------~-~g-~~p~~g~k~a~~~ 136 (136)
T 1wyp_A 82 AITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAK-----------------T-KG-NKVNVGVSGPSSG 136 (136)
T ss_dssp HHHHHTCCGGGCCCHHHHHSCSCSHHHHHHHHHHHHHHH-----------------H-HT-CCCCCCCCSCCCC
T ss_pred HHHHcCCCcccccCchHHhcCCCHHHHHHHHHHHHHHHH-----------------H-CC-CCCcCcccccccC
Confidence 999999999999999999999999999999999999981 1 12 5999999998763
No 6
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=100.00 E-value=2e-40 Score=275.40 Aligned_cols=139 Identities=25% Similarity=0.468 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcccccc-CCccchhhhhHHHHHHHHHHcCCCCc
Q psy6125 61 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINV-STMAFKCMENINCFLDVAREMGVPAQ 139 (242)
Q Consensus 61 ~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~-~~~~f~~~ENI~~FL~ac~~lGv~~~ 139 (242)
.++++++||+++++++++ +.++|.++|+|||+||+|+|++.|++|++|+. ++++|++||||+.||++|+.+|||+.
T Consensus 12 ~~~e~~~WIe~~l~~~l~---~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~~~ 88 (159)
T 1p2x_A 12 RVDEAKKWIEECLGTDLG---PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEI 88 (159)
T ss_dssp HHHHHHHHHHHHHTSCCC---CGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHhCCCCC---ChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHHHcCCCcc
Confidence 468999999999999996 45789999999999999999999999999986 68899999999999999999999999
Q ss_pred CccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCCCCCCCcccc-cccccccHHHhhcccce
Q psy6125 140 ETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEAD-KNVRHFTEEQLKAGQTV 218 (242)
Q Consensus 140 ~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~k~~~-~~~r~ft~~~l~~~~~~ 218 (242)
++|+|+||||++|+++|+.||++|++.+ ... .+||+.++ .|+|+||||||++++..
T Consensus 89 ~lF~~~DL~e~kn~~~Vi~~L~aL~~~~--------------------~~~---g~~p~~~~~~~~~~fseeql~~~~~~ 145 (159)
T 1p2x_A 89 FHFELTDIYEGKNLPKVIYCIHALSYFL--------------------SMQ---DLAPPLIKSDENLSFTDEDVSIIVRR 145 (159)
T ss_dssp GCCCHHHHSSCSCHHHHHHHHHHHHHHH--------------------HTT---TSSCCCCCCCTTCCCCHHHHHHHHHH
T ss_pred cccCHHHHHhcCCHHHHHHHHHHHHHHH--------------------hhC---CCCCCchhhhccCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998 111 14566654 59999999999999988
Q ss_pred e---eecccc
Q psy6125 219 I---SLQYGS 225 (242)
Q Consensus 219 ~---~~q~g~ 225 (242)
+ |+||+.
T Consensus 146 l~~~g~~~~~ 155 (159)
T 1p2x_A 146 LRQSNVILPN 155 (159)
T ss_dssp HHHCCCCCCC
T ss_pred HHHcCCCCCC
Confidence 7 666554
No 7
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=100.00 E-value=5e-40 Score=268.94 Aligned_cols=134 Identities=36% Similarity=0.518 Sum_probs=120.9
Q ss_pred cccccHHHHHHHHHHHHHHhCCCCCC-CCChhhHHHHhhhcHHHHHHHHhhcC---CCcc-ccccCCccchhhhhHHHHH
Q psy6125 54 NSKYSEELAQECLEWIREITGENIDT-SGNMDNFYEILKDGTLLCKLVNDLKP---NSVK-KINVSTMAFKCMENINCFL 128 (242)
Q Consensus 54 ~~Kyd~e~~~e~~~WI~~vlg~~~~~-~~~~~~f~~~LrDGvvLCkL~N~l~P---g~i~-ki~~~~~~f~~~ENI~~FL 128 (242)
..+||+++++++++||+++++++++. +++.++|.++|+|||+||+|+|+++| ++|+ +|+.++++|++||||++||
T Consensus 3 ~~~y~~~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin~~~~~f~~~eNI~~FL 82 (144)
T 1ujo_A 3 SGSSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFL 82 (144)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeecCCCchhHHHHHHHHHH
Confidence 57899999999999999999999863 23457999999999999999999999 8998 9999999999999999999
Q ss_pred HHHHHcCCCCcCccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCC-CCCCCccccc
Q psy6125 129 DVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGK-PSIGPKEADK 202 (242)
Q Consensus 129 ~ac~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-p~~g~k~~~~ 202 (242)
++|+.+|||+.++|+|+||||++|+++|+.||++|++++. ....+.|.| |.+|||++..
T Consensus 83 ~ac~~~Gv~~~~lF~t~DL~e~kn~~~V~~cL~aL~~~a~---------------~~~~~~~~g~P~~~~k~~~~ 142 (144)
T 1ujo_A 83 KAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAV---------------TKNDGNYRGDPNWFMKSGPS 142 (144)
T ss_dssp HHHHHHTCCSSSCCCHHHHHTCSCHHHHHHHHHHHHHHHH---------------HHCSSCCSSCSTTTCSSSCC
T ss_pred HHHHHcCcCccccCChhHHHhcCCHHHHHHHHHHHHHHHH---------------HcCCCCcCCCCCCCcccCCC
Confidence 9999999999999999999999999999999999999991 122247877 9999998753
No 8
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=263.72 Aligned_cols=141 Identities=26% Similarity=0.429 Sum_probs=121.2
Q ss_pred hhhcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--cccc--------cCCccchh
Q psy6125 51 TTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKIN--------VSTMAFKC 120 (242)
Q Consensus 51 ~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~--------~~~~~f~~ 120 (242)
.++..+|.+..+ ++++||++++|++++ ..++|.++|+|||+||+|+|+|.|++| ++|+ .++++|++
T Consensus 39 ~~~a~eyl~~~~-e~~~WIe~~lg~~l~---~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~ 114 (193)
T 3i6x_A 39 QNVAYEYLCHLE-EAKRWMEACLGEDLP---PTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRH 114 (193)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHSSCCC---CGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGG
T ss_pred hhHHHHHHHHHH-HHHHHHHHHhCCCCC---ChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHH
Confidence 356778888766 999999999999996 346899999999999999999999998 4784 46789999
Q ss_pred hhhHHHHHHHHHHcCCCCcCccccchhhcccChhHHHHHHHHHHHhhhhcccchhhHHHHHHHhhcCCCCCCCCCCCccc
Q psy6125 121 MENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEA 200 (242)
Q Consensus 121 ~ENI~~FL~ac~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~k~~ 200 (242)
||||++||++|+.+|||+.++|+|+||||++|+++|+.||++|++.+. ..++ .|.++.
T Consensus 115 ~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn~~~V~~cL~aL~~~a~------------------~~G~-~P~i~~--- 172 (193)
T 3i6x_A 115 TDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLF------------------KLGL-APQIQD--- 172 (193)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHH------------------HTTS-SCCCCC---
T ss_pred HHHHHHHHHHHHHcCCCcccCCCcHHHhcCCCHHHHHHHHHHHHHHHh------------------hCCC-CCCccc---
Confidence 999999999999999999999999999999999999999999999991 1122 354433
Q ss_pred ccccccccHHHhhcccc
Q psy6125 201 DKNVRHFTEEQLKAGQT 217 (242)
Q Consensus 201 ~~~~r~ft~~~l~~~~~ 217 (242)
..++++||+|||++.+.
T Consensus 173 l~g~~~Ft~eei~~~~~ 189 (193)
T 3i6x_A 173 LYGKVDFTEEEINNMKT 189 (193)
T ss_dssp CTTTCCCCHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHH
Confidence 35799999999998653
No 9
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=100.00 E-value=4.1e-36 Score=234.54 Aligned_cols=103 Identities=37% Similarity=0.634 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHHHcCCCCc
Q psy6125 60 ELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAREMGVPAQ 139 (242)
Q Consensus 60 e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~~lGv~~~ 139 (242)
+.++++++||++++|++++ ++|.++|+||++||+|+|++.|++|++|+.++++|+++|||+.||++|+.+|||+.
T Consensus 3 ~~e~e~~~WIe~~l~~~~~-----~~l~~~L~dGvvLCkL~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~~~ 77 (108)
T 1h67_A 3 QTERQLRVWIEGATGRRIG-----DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPH 77 (108)
T ss_dssp CSSHHHHHHHHHHHSCCCC-----SCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTTSSHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHhCCCCc-----HHHHHHHccHHHHHHHHHHhCCCCcccccccccchHHHHHHHHHHHHHHHcCCCcc
Confidence 4578999999999999983 58999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 140 ETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 140 ~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
++|+|+||||++|+++|+.||++|++.|
T Consensus 78 ~lF~~~DL~e~kn~~~V~~~l~aL~~~a 105 (108)
T 1h67_A 78 DIFEANDLFENTNHTQVQSTLIALASQA 105 (108)
T ss_dssp GSCCHHHHHHTCCSHHHHHHHHHHHHHH
T ss_pred cccChhHHHhCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998
No 10
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.97 E-value=3.7e-32 Score=216.29 Aligned_cols=106 Identities=26% Similarity=0.463 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCC--CCChhh-HHHHhhhcHHHHHHHHhhcCCCcccccc-CCccchhhhhHHHHHHHHHHc
Q psy6125 59 EELAQECLEWIREITGENIDT--SGNMDN-FYEILKDGTLLCKLVNDLKPNSVKKINV-STMAFKCMENINCFLDVAREM 134 (242)
Q Consensus 59 ~e~~~e~~~WI~~vlg~~~~~--~~~~~~-f~~~LrDGvvLCkL~N~l~Pg~i~ki~~-~~~~f~~~ENI~~FL~ac~~l 134 (242)
.+.|+++++||+++++.+.+. ..+.++ |.++|||||+||+|+|+++|++|++|+. +.++|++||||+.||++|+.+
T Consensus 5 ~~~e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~~~~f~~~eNI~~FL~a~~~~ 84 (121)
T 1wyr_A 5 SSGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATL 84 (121)
T ss_dssp CCSHHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHc
Confidence 456899999999998755431 123445 6899999999999999999999999984 567899999999999999999
Q ss_pred CCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 135 GVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 135 Gv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
|+ ++|+|+||||++|+++|+.||++|++++
T Consensus 85 g~---~~F~~~DL~e~kn~~~V~~cL~aL~~~~ 114 (121)
T 1wyr_A 85 QV---EIFDPDDLYSGVNFSKVLSTLLAVNKAT 114 (121)
T ss_dssp TC---CCCCHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred CC---CccCHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 97 7999999999999999999999999999
No 11
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=213.26 Aligned_cols=106 Identities=29% Similarity=0.533 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHhC-CCCC-CCCChhhH-HHHhhhcHHHHHHHHhhcCCCcccccc-CCccchhhhhHHHHHHHHHH-
Q psy6125 59 EELAQECLEWIREITG-ENID-TSGNMDNF-YEILKDGTLLCKLVNDLKPNSVKKINV-STMAFKCMENINCFLDVARE- 133 (242)
Q Consensus 59 ~e~~~e~~~WI~~vlg-~~~~-~~~~~~~f-~~~LrDGvvLCkL~N~l~Pg~i~ki~~-~~~~f~~~ENI~~FL~ac~~- 133 (242)
++.++++++||+++++ +... +..+.++| .++|||||+||+|+|+++|++|++|+. +.++|+++|||+.||++|+.
T Consensus 11 ~~~~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~~~~f~~~eNI~~FL~a~~~~ 90 (126)
T 2l3g_A 11 MNSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGAS 90 (126)
T ss_dssp CCHHHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCCCcchHHHHHHHHHHHHHHHh
Confidence 4578999999999976 3311 11345677 699999999999999999999999974 56789999999999999999
Q ss_pred cCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 134 MGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 134 lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
+|+ ++|+|+||||++|+++|+.||++|++.+
T Consensus 91 ~g~---~lF~t~DL~e~kn~~~V~~cL~aL~~~~ 121 (126)
T 2l3g_A 91 LRL---ETFDANDLYQGQNFNKVLSSLVTLNKVT 121 (126)
T ss_dssp SCC---CCCCHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCC---CccCHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 996 7999999999999999999999999998
No 12
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.93 E-value=2.7e-26 Score=223.26 Aligned_cols=108 Identities=29% Similarity=0.631 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhCCCCCC-----CCChhhHHHHhhhcHHHHHHHHhhcCCCc--ccccc-CCc-cchhhhhHHHHHHH
Q psy6125 60 ELAQECLEWIREITGENIDT-----SGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKINV-STM-AFKCMENINCFLDV 130 (242)
Q Consensus 60 e~~~e~~~WI~~vlg~~~~~-----~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~~-~~~-~f~~~ENI~~FL~a 130 (242)
++|+||+.||+++...+.++ ..+.++|.++|||||+||+|+|+|+|++| ++|+. +++ +|++||||++||+|
T Consensus 5 ~~w~~~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~ 84 (587)
T 3ky9_A 5 ELWRQCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLST 84 (587)
T ss_dssp CHHHHHHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHH
Confidence 57999999999987755542 24568999999999999999999999999 57874 444 69999999999999
Q ss_pred H-HHcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 131 A-REMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 131 c-~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
| +.+|||+.++|+|+||||++|+++|+.||++|++.+
T Consensus 85 ~~~~~g~~~~~~f~~~Dl~~~~~~~~V~~~l~~l~~~~ 122 (587)
T 3ky9_A 85 CCEKFGLKRSELFEAFDLFDVQDFGKVIYTLSALSWTP 122 (587)
T ss_dssp HHHTTCCCTTSSCCHHHHHTCSCHHHHHHHHHHHHHST
T ss_pred HHHHcCCCHHHcCCchhhhccCCcchHHHHHHHHhhhh
Confidence 9 889999999999999999999999999999999976
No 13
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=137.56 Aligned_cols=113 Identities=17% Similarity=0.252 Sum_probs=99.5
Q ss_pred hhcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccc-cCCccchhhhhHHHHHHH
Q psy6125 52 TINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKIN-VSTMAFKCMENINCFLDV 130 (242)
Q Consensus 52 ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~-~~~~~f~~~ENI~~FL~a 130 (242)
+...++.++.++.+.+||+..++..... ....+|.+.|+||++||+|+|.+.|+.+++++ .+.+.|+++|||+.||++
T Consensus 10 ~~~~~~~~~q~~~f~~WIN~~L~~~~~~-~~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p~~~~~~~eNv~~aL~~ 88 (129)
T 2yrn_A 10 KPVIHGLEDQKRIYTDWANHYLAKSGHK-RLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNF 88 (129)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHTCCC-SCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCSTTHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcccCCC-ccchhHHHHcccHHHHHHHHHHHhcCCcccccCCCCcHHHHHHHHHHHHHH
Confidence 4667788888999999999998765221 13578999999999999999999999999998 467899999999999999
Q ss_pred HHHcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 131 AREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 131 c~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
++.+|++..++ .+.|+++ +|+..|+.+|.+|.|+-
T Consensus 89 ~~~~gv~~~~i-~~~DI~d-gn~~~iL~Llw~L~r~~ 123 (129)
T 2yrn_A 89 LAAKGINIQGL-SAEEIRN-GNLKAILGLFFSLSRYK 123 (129)
T ss_dssp HHHHTCCCTTC-CHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred HHHhCCcccCC-Chhhhhc-CCHhHHHHHHHHHHHHH
Confidence 99999998886 7999998 68999999999999876
No 14
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.60 E-value=1.5e-15 Score=145.66 Aligned_cols=98 Identities=27% Similarity=0.411 Sum_probs=83.1
Q ss_pred ccccHHHHHHHHHHHHHHhCCC------CCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--cccccCC--ccchhhhhH
Q psy6125 55 SKYSEELAQECLEWIREITGEN------IDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKINVST--MAFKCMENI 124 (242)
Q Consensus 55 ~Kyd~e~~~e~~~WI~~vlg~~------~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~~~~--~~f~~~ENI 124 (242)
++++++.+..+.+||+++++++ ++.++...+|++.|+||++||+|+|.+.|+++ ++++.++ ++|+++|||
T Consensus 2 ~~~~~~q~~~f~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~~~~~~~~~eNi 81 (506)
T 1pxy_A 2 SPGIQSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENH 81 (506)
T ss_dssp -----CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccccccHHHHHHHH
Confidence 3467778899999999999887 44445678999999999999999999999998 7888654 379999999
Q ss_pred HHHHHHHHHcCCCCcCccccchhhcccCh
Q psy6125 125 NCFLDVAREMGVPAQETFQTVDLWERQNL 153 (242)
Q Consensus 125 ~~FL~ac~~lGv~~~~lF~t~DL~E~kn~ 153 (242)
+.||++|+.+|++..++ ++.||+|+++.
T Consensus 82 ~~~L~~~k~~g~~~~~i-~~~Dl~dg~~~ 109 (506)
T 1pxy_A 82 TLCLNSAKAVGCSVVNI-GTQDLAEGRPH 109 (506)
T ss_dssp HHHHHHHHHTTCCCTTC-CHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCcCCC-CHHHHhcCChH
Confidence 99999999999999997 99999999863
No 15
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=99.59 E-value=7.4e-15 Score=130.71 Aligned_cols=114 Identities=25% Similarity=0.403 Sum_probs=91.5
Q ss_pred hhhcccccHHHHHHHHHHHHHHhCCC------CCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcc--ccccCC-ccchhh
Q psy6125 51 TTINSKYSEELAQECLEWIREITGEN------IDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVK--KINVST-MAFKCM 121 (242)
Q Consensus 51 ~ki~~Kyd~e~~~e~~~WI~~vlg~~------~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~--ki~~~~-~~f~~~ 121 (242)
..+..+|+++.++++.+||+..++.+ ++.++...+|.+.|+||++||+|+|.+.|+.++ +++.++ +.|+++
T Consensus 15 ~~~~~~~~~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~ 94 (275)
T 1aoa_A 15 EGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQ 94 (275)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHH
T ss_pred CCCccccCHHHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHH
Confidence 45789999999999999999999874 233345689999999999999999999999985 777654 479999
Q ss_pred hhHHHHHHHHHHcCCCCcCccccchhhcccChhHHHHHHHHHHHh
Q psy6125 122 ENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRK 166 (242)
Q Consensus 122 ENI~~FL~ac~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~ 166 (242)
|||+.||++++.+|++... +++.||++++ ...++.-|..|.+.
T Consensus 95 eNv~~aL~~~k~~g~~l~~-I~~~DIvdg~-~~liLgLlw~li~~ 137 (275)
T 1aoa_A 95 ENLNLALNSASAIGCHVVN-IGAEDLRAGK-PHLVLGLLWQIIKI 137 (275)
T ss_dssp HHHHHHHHHHHHTTCCCTT-CCHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccC-CCHHHHHcCc-HHHHHHHHHHHHHH
Confidence 9999999999999999887 5999999985 56666666666654
No 16
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.53 E-value=4.3e-14 Score=135.81 Aligned_cols=113 Identities=24% Similarity=0.395 Sum_probs=93.9
Q ss_pred cccccHHHHHHHHHHHHHHhCCC------CCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--ccccc-----CCccchh
Q psy6125 54 NSKYSEELAQECLEWIREITGEN------IDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKINV-----STMAFKC 120 (242)
Q Consensus 54 ~~Kyd~e~~~e~~~WI~~vlg~~------~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~~-----~~~~f~~ 120 (242)
..+|+++.++++.+||+.+++.+ +|.+....+|++.|+||++||+|+|.+.|+++ ++++. +.+.|++
T Consensus 6 ~~~~~~~q~~~f~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~~~~~~~ 85 (513)
T 1rt8_A 6 MHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKC 85 (513)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHH
T ss_pred cCcccHHHHHHHHHHHHHhccCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccccCcccHHHH
Confidence 36799999999999999999876 34344567999999999999999999999998 56764 4678999
Q ss_pred hhhHHHHHHHHHHcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 121 MENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 121 ~ENI~~FL~ac~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
+|||+.||++++.+|++...-|++.||+|++ ...++.-|..|-+.-
T Consensus 86 ~eNi~~~L~~~k~~g~~~l~~i~~~DI~dg~-~~liLgLiW~li~~~ 131 (513)
T 1rt8_A 86 IENNNVVINSAKAMGGISITNIGAGDILEGR-EHLILGLVWQIIRRG 131 (513)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSCCHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCCcCHHhhhcCC-HHHHHHHHHHHHHHh
Confidence 9999999999999999777779999999985 566666677776655
No 17
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=99.52 E-value=1.2e-14 Score=128.33 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=93.7
Q ss_pred hcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHH
Q psy6125 53 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAR 132 (242)
Q Consensus 53 i~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~ 132 (242)
+..+++...++++.+||+.+++...+ ...+|.+.|+||++||+|+|.+.|+.+++++.+++.|+++|||+.||++++
T Consensus 20 ~~~~~~~~q~~~f~~WiN~~L~~~~~---~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~~~~~~~~~~~eNi~~aL~~~k 96 (254)
T 1wku_A 20 LDPAWEKQQRKTFTAWCNSHLRKAGT---QIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIA 96 (254)
T ss_dssp ---CHHHHHHHHHHHHHHHHHGGGTC---CCSCTTTTTTTSHHHHHHHHHHHCSCCCCCCSCCSHHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHccccCC---CccCHHHHccCHHHHHHHHHHhCcCCCCCCCCCccHHHHHHhHHHHHHHHH
Confidence 56778888899999999999876532 357899999999999999999999999888888889999999999999999
Q ss_pred HcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 133 EMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 133 ~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
.+|++...+ ++.|++++ |...++.-|..|.+.-
T Consensus 97 ~~gv~lv~I-~~~DIvdG-~~kliLgLlW~li~~~ 129 (254)
T 1wku_A 97 SKGVKLVSI-GAEEIVDG-NLKMTLGMIWTIILRF 129 (254)
T ss_dssp TTTCCCCSC-CHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred HcCCCccCC-CHHHHhcc-chHHHHHHHHHHHHHH
Confidence 999998774 99999988 6777777777776654
No 18
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=99.44 E-value=1.3e-13 Score=109.54 Aligned_cols=95 Identities=20% Similarity=0.352 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcc--ccc-cCCccchhhhhHHHHHHHHHHcCCCC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVK--KIN-VSTMAFKCMENINCFLDVAREMGVPA 138 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~--ki~-~~~~~f~~~ENI~~FL~ac~~lGv~~ 138 (242)
+.|+.+||+++++.+++ .. +.|+||+++|+|+|.|.||+|+ ||+ .+++.|.+++|+..|.++++++||+.
T Consensus 7 r~ElL~WIN~~L~~~~~---ki----E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k 79 (123)
T 2qjz_A 7 RHDMLAWINESLQLNLT---KI----EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 79 (123)
T ss_dssp HHHHHHHHHHHHTCCCC---CG----GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCCCc---hH----HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 67999999999999996 22 5799999999999999999997 999 89999999999999999999999996
Q ss_pred cCccccchhhcccChhHHHHHHHHHHHh
Q psy6125 139 QETFQTVDLWERQNLNSVVICLQSLGRK 166 (242)
Q Consensus 139 ~~lF~t~DL~E~kn~~~Vv~cL~aL~~~ 166 (242)
.+....|.-++ +.-=+.-|..+.+.
T Consensus 80 --~i~v~kLvkgk-~qdnleflqW~k~f 104 (123)
T 2qjz_A 80 --IIPVDKLVKGK-FQDNFEFVQWFKKF 104 (123)
T ss_dssp --CCCHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred --ccCHHHHHcCC-chhHHHHHHHHHHH
Confidence 56777777776 33333444444443
No 19
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=114.39 Aligned_cols=102 Identities=17% Similarity=0.301 Sum_probs=83.5
Q ss_pred cccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcc--ccc-cCCccchhhhhHHHHHHHHH
Q psy6125 56 KYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVK--KIN-VSTMAFKCMENINCFLDVAR 132 (242)
Q Consensus 56 Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~--ki~-~~~~~f~~~ENI~~FL~ac~ 132 (242)
.-+++.+.|+.+||+++++.+++ .. +.|+||+++|+|+|.|.||+|+ ||+ .+++.|.+++|+..|.++++
T Consensus 18 ~~~~~sr~ElL~WIN~~L~~~~~---ki----E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~ 90 (159)
T 1wyo_A 18 TSENLSRHDMLAWVNDSLHLNYT---KI----EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFK 90 (159)
T ss_dssp CCCCCCHHHHHHHHHHHSCCCCS---SG----GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHCCCCc---hh----hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHH
Confidence 34566789999999999999995 22 5799999999999999999997 999 89999999999999999999
Q ss_pred HcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 133 EMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 133 ~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
++||++ .+....|.-++ +.-=+.-|..+.++.
T Consensus 91 k~gV~k--~ipV~kLvkgk-~qdNlEFlqWfk~f~ 122 (159)
T 1wyo_A 91 KMGVDK--IIPVEKLVKGK-FQDNFEFIQWFKKFF 122 (159)
T ss_dssp HHTCCC--CCCHHHHTTTC-SHHHHHHHHHHHHHH
T ss_pred HcCCCC--ccCHHHHhcCC-chhHHHHHHHHHHHH
Confidence 999996 57888888777 233334444444443
No 20
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=99.39 E-value=5e-13 Score=117.15 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=91.9
Q ss_pred cccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc-ccccc-CCccchhhhhHHHHHHHH
Q psy6125 54 NSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV-KKINV-STMAFKCMENINCFLDVA 131 (242)
Q Consensus 54 ~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i-~ki~~-~~~~f~~~ENI~~FL~ac 131 (242)
.+++++..++...+||+..++..-+ ...+|.+.|+||++||+|+|.+.|+.+ ++++. +.+.|+++||++.||+++
T Consensus 14 ~~~~~~~q~~~f~~WiN~~L~~~~~---~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~ 90 (245)
T 2wa7_A 14 DAPWKKIQQNTFTRWCNEHLKCVNK---RIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFL 90 (245)
T ss_dssp -CGGGGHHHHHHHHHHHHHHGGGTC---CCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccccCC---CccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHH
Confidence 4678888899999999999864322 356889999999999999999999998 78875 467899999999999999
Q ss_pred HHcCCCCcCccccchhhcccChhHHHHHHHHHHHhhh
Q psy6125 132 REMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAS 168 (242)
Q Consensus 132 ~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~ 168 (242)
+.+|++... ..+.|+++++ ...++.-|..|.+.-+
T Consensus 91 k~~g~~lv~-I~~~DIvdG~-~kliLgLlW~li~~~~ 125 (245)
T 2wa7_A 91 DRESIKLVS-IDSKAIVDGN-LKLILGLVWTLILHYS 125 (245)
T ss_dssp HHTTCCCCS-CCHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred HHcCCcccC-CCHHHhhCCC-HHHHHHHHHHHHHHHc
Confidence 999999877 4999999994 6777777777776653
No 21
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=99.33 E-value=2.3e-12 Score=112.68 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=91.0
Q ss_pred ccccHHHHHHHHHHHHHHhCCCCC--CCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHH
Q psy6125 55 SKYSEELAQECLEWIREITGENID--TSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAR 132 (242)
Q Consensus 55 ~Kyd~e~~~e~~~WI~~vlg~~~~--~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~ 132 (242)
.+++...++.+.+||+..++.+.. .+....+|.+.|+||++||+|+|.+.|+.+++. .+++.|+++||++.+|++++
T Consensus 7 ~e~~~~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~-~~~~~~~~~eNv~~aL~~~k 85 (245)
T 1sh5_A 7 DERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE-KGRMRFHKLQNVQIALDYLR 85 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCC-CCCSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccCC-CCcchHHHHHhHHHHHHHHH
Confidence 345677788999999999987411 113457899999999999999999999998764 46679999999999999999
Q ss_pred HcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 133 EMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 133 ~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
.+|++...+ .+.|++++ |...++.-|..|.+.-
T Consensus 86 ~~g~~l~~I-~~~DIvdg-~~k~iLgLlw~li~~~ 118 (245)
T 1sh5_A 86 HRQVKLVNI-RNDDIADG-NPKLTLGLIWTIILHF 118 (245)
T ss_dssp HTTCCCCSC-CHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HcCCcccCC-ChHhhhcc-cHHHHHHHHHHHHHhh
Confidence 999998885 99999998 4677777777777665
No 22
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=99.33 E-value=1.8e-12 Score=113.59 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=90.5
Q ss_pred hcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHH
Q psy6125 53 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAR 132 (242)
Q Consensus 53 i~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~ 132 (242)
...+++...++.+.+||+..++.... +...+|.+.|+||++||+|+|.|.|+.+++. .+.+.|+++||++.||++++
T Consensus 9 ~~~e~~~~q~~~f~~WiN~~L~~~~~--~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~-~~~~~~~~~eNv~~aL~~~k 85 (246)
T 1dxx_A 9 DSYEREDVQKKTFTKWVNAQFSKFGK--QHIENLFSDLQDGRRLLDLLEGLTGQKLPKE-KGSTRVHALNNVNKALRVLQ 85 (246)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTC--CCCSCTTTTTTTSHHHHHHHHHHHSCCCCCC-CCSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhccccCC--CCccCHHHHhCcHHHHHHHHHHHcCCcCCCC-CCccHHHHHHHHHHHHHHHH
Confidence 34667788899999999999875431 1356899999999999999999999988765 35678999999999999999
Q ss_pred HcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 133 EMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 133 ~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
.+|++... +.+.|++++. ...++.-|..|.+.-
T Consensus 86 ~~g~~l~~-I~~~DIvdg~-~~liL~Llw~li~~~ 118 (246)
T 1dxx_A 86 NNNVDLVN-IGSTDIVDGN-HKLTLGLIWNIILHW 118 (246)
T ss_dssp HTTCCCTT-CCHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred HcCCcccc-CCHHHhhccc-HHHHHHHHHHHHHHH
Confidence 99999887 8999999994 666666666665543
No 23
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=99.28 E-value=4.8e-12 Score=114.13 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=95.5
Q ss_pred hhcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHH
Q psy6125 52 TINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVA 131 (242)
Q Consensus 52 ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac 131 (242)
+++.+++...++...+||+..+...-+ ...+|++.|+||++||+|++.|.|+.+++ +.+++.|+++||++.+|+++
T Consensus 65 ~~~~e~~~vQkktft~WINs~L~~~~~---~V~dL~~DL~DGvvL~~Lle~L~~~~l~~-~~~~~r~~kleNvn~aL~~l 140 (296)
T 3f7p_A 65 RIADERDRVQKKTFTKWVNKHLIKAQR---HISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYL 140 (296)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHGGGTC---CCSCTTTTTTTSHHHHHHHHHHHCCCCCC-CCCSSHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHcccCCC---CcccHHHHHhhHHHHHHHHHHhcCCcccc-cCCcChhhhhhhHHHHHHHH
Confidence 588888888999999999999865432 35789999999999999999999999877 35678999999999999999
Q ss_pred HHcCCCCcCccccchhhcccChhHHHHHHHHHHHhhh
Q psy6125 132 REMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAS 168 (242)
Q Consensus 132 ~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~ 168 (242)
+..|++-.. ..+.|++++ |...++.-|..|.+.-+
T Consensus 141 k~~gv~lv~-I~~~DIvdG-n~kliLgLlW~Li~~~~ 175 (296)
T 3f7p_A 141 RHRQVKLVN-IRNDDIADG-NPKLTLGLIWTIILHFQ 175 (296)
T ss_dssp HHTTCCCTT-CCHHHHHTT-CHHHHHHHHHHHHHHHT
T ss_pred HHhCccccC-CChhhhhcc-chHHHHHHHHHhhcccc
Confidence 999998766 688999999 78888888888887653
No 24
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.3e-10 Score=95.53 Aligned_cols=55 Identities=31% Similarity=0.615 Sum_probs=47.3
Q ss_pred CcchhccCCCHHHHHHHHHHHHHhhcCCCCCC-CCchhHHHHhhcchhhhhhhhccc
Q psy6125 1 MSDRINSKYSEELAQECLEWIREITGENIDTS-GNMDNFYEILKDGTLLCKTTINSK 56 (242)
Q Consensus 1 ~~~K~~~K~d~~~~~e~~~WI~~~~g~~i~~~-~~~~~~~~~Lk~g~~Lc~~ki~~K 56 (242)
+++|+++|||+++++++++||++++|++++.+ .+.++|.+.|+||++||+ ++|..
T Consensus 6 ~~~k~~~ky~~~~e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCk-L~N~l 61 (155)
T 1wym_A 6 SGQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCE-LINAL 61 (155)
T ss_dssp SCSSCCCSCCHHHHHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHH-HHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHH-HHHHh
Confidence 47899999999999999999999999998762 345789999999999995 55543
No 25
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.11 E-value=2.5e-10 Score=109.61 Aligned_cols=99 Identities=24% Similarity=0.433 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--ccccc-C-----CccchhhhhHHHHHHHHHH
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKINV-S-----TMAFKCMENINCFLDVARE 133 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~~-~-----~~~f~~~ENI~~FL~ac~~ 133 (242)
++....||+.. +.+. ...+|.+.|+||++||+|++++.||.+ ++++. | .+.|+++||++.+|++++.
T Consensus 287 ~k~f~~WiN~~-~~~~----~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~~~~ 361 (513)
T 1rt8_A 287 ARVFTLWLNSL-DVTP----SIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKN 361 (513)
T ss_dssp HHHHHHHHHHT-TCSS----CCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCC----CccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcccccccchHHHHHHHHHHHHHHHH
Confidence 45789999998 3332 357899999999999999999999987 67775 3 4789999999999999999
Q ss_pred cCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 134 MGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 134 lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
+|++-.. +.+.|+++++ ...++.-|..|.+.-
T Consensus 362 ~gv~lv~-i~~~DIvdg~-~~~~LgLlW~li~~~ 393 (513)
T 1rt8_A 362 QGFSLVG-IQGADITDGS-RTLTLALVWQMMRMN 393 (513)
T ss_dssp TTCCCTT-CCHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred cCceeec-cchhhhhcCC-chhhHHHHHHHHHHH
Confidence 9999877 8999999984 667777777776544
No 26
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=99.07 E-value=8.4e-11 Score=117.96 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=93.7
Q ss_pred hcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHH
Q psy6125 53 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAR 132 (242)
Q Consensus 53 i~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~ 132 (242)
|+.++.+..++....||+.+++...+ ...+|.+.|+||++||+|+|.|.|+.+++++.+++.|+++||++.+|++++
T Consensus 1 ~~~~~~~~q~~~f~~Win~~L~~~~~---~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~~~~~~~~~~eN~~~~l~~~~ 77 (863)
T 1sjj_A 1 LDPAWEKQQRKTFTAWCNSHLRKAGT---QIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIA 77 (863)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHCS---CCCCCSSTTSSCHHHHHHHHHTSCCCCCCSCCCSSHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccCCC---CccCHHHHhcCHHHHHHHHHHhCCCceeCCCCCccHHHHHHHHHHHHHHHH
Confidence 35678888999999999999854332 246789999999999999999999999888888889999999999999999
Q ss_pred HcCCCCcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 133 EMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 133 ~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
..|++-.. ..+.|++++ |...++.-|..|.+.-
T Consensus 78 ~~g~~~~~-i~~~di~~g-~~~~~l~l~w~l~~~~ 110 (863)
T 1sjj_A 78 SKGVKLVS-IGAEEIVDG-NVKMTLGMIWTIILRF 110 (863)
T ss_dssp HTTCCCTT-CCSHHHHTT-CHHHHHHHHHHHHSCC
T ss_pred HcCCccCC-CChHHhhcC-CHHHHHHHHHHHHHHH
Confidence 99998766 689999998 6777777777776554
No 27
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=98.97 E-value=2.2e-10 Score=92.17 Aligned_cols=53 Identities=36% Similarity=0.653 Sum_probs=45.1
Q ss_pred CcchhccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 1 MSDRINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 1 ~~~K~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
+++|+++|||+++++++++||++++|++++. +|.+.|+||++||+ + .++..|.
T Consensus 6 ~~~k~~~ky~~~~~~e~~~WIe~~l~~~~~~-----~l~~~L~DGvvLCk-L-~N~l~P~ 58 (136)
T 1wyp_A 6 SGNKLAQKYDHQREQELREWIEGVTGRRIGN-----NFMDGLKDGIILCE-F-INKLQPG 58 (136)
T ss_dssp SCCCCCSSCCHHHHHHHHHHHHHHTCCCCCS-----CTTHHHHTSHHHHH-H-HHHHSTT
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHhCCCCcH-----HHHHHHccHHhHHH-H-HHhhCCC
Confidence 4789999999999999999999999999843 79999999999995 4 4444443
No 28
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=98.96 E-value=1.1e-09 Score=97.50 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=89.2
Q ss_pred cccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc-ccccc-CCccchhhhhHHHHHHHH
Q psy6125 54 NSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV-KKINV-STMAFKCMENINCFLDVA 131 (242)
Q Consensus 54 ~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i-~ki~~-~~~~f~~~ENI~~FL~ac 131 (242)
...+..-.++...+||+..+...- ....+|.+.|+||++||+|++.|.|+.+ ++++. +.+.|+.+||++.+|+++
T Consensus 41 d~~w~~vQkktft~WiN~~L~~~~---~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~l 117 (272)
T 3hoc_A 41 DAPWKKIQQNTFTRWCNEHLKCVS---KRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFL 117 (272)
T ss_dssp -CGGGGHHHHHHHHHHHHHHGGGT---CCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHhccCC---CCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccHHHHHHHHHHHHHHH
Confidence 344444567789999999875422 2357899999999999999999999998 78874 567899999999999999
Q ss_pred HHcCCCCcCccccchhhcccChhHHHHHHHHHHHhhhh
Q psy6125 132 REMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASI 169 (242)
Q Consensus 132 ~~lGv~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~ 169 (242)
+..|++-.. ..+.|+.++ |...++.-|..|-+..++
T Consensus 118 k~~gv~lvn-I~~~DIvdG-n~kliLgLlW~Li~~~~i 153 (272)
T 3hoc_A 118 DRESIKLVS-IDSKAIVDG-NLKLILGLIWTLILHYSI 153 (272)
T ss_dssp HHTTCCCSS-CCHHHHHTT-CHHHHHHHHHHHHHHHHT
T ss_pred HHcCCcccc-cccchhhcC-CHHHHHHHHHHHHHHHhh
Confidence 999998766 578999998 577888888888776643
No 29
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=98.93 E-value=3.2e-10 Score=92.33 Aligned_cols=49 Identities=39% Similarity=0.667 Sum_probs=43.4
Q ss_pred CcchhccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcc
Q psy6125 1 MSDRINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINS 55 (242)
Q Consensus 1 ~~~K~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~ 55 (242)
+++|+++|||+++++++++||++++|++++ ++|.+.|+||++||+ ++|.
T Consensus 6 ~~~k~~~ky~~~~~~e~~~WIe~~l~~~i~-----~~l~~~L~DGvvLCk-L~N~ 54 (146)
T 1wyn_A 6 SGNRLLSKYDPQKEAELRTWIEGLTGLSIG-----PDFQKGLKDGTILCT-LMNK 54 (146)
T ss_dssp CCCCCCSCCCTTHHHHHHHHHHHHHCCCCC-----SCHHHHHHTTSHHHH-HHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHhCCCCc-----HHHHHHHccHHHHHH-HHHH
Confidence 478999999999999999999999999984 379999999999995 4443
No 30
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=98.90 E-value=6.4e-09 Score=92.25 Aligned_cols=147 Identities=22% Similarity=0.353 Sum_probs=98.1
Q ss_pred chhccCCCHHHHHHHHHHHHHhhcCCC------CCCCCchhHHHHhhcchhhhhhhhccc--------------ccH---
Q psy6125 3 DRINSKYSEELAQECLEWIREITGENI------DTSGNMDNFYEILKDGTLLCKTTINSK--------------YSE--- 59 (242)
Q Consensus 3 ~K~~~K~d~~~~~e~~~WI~~~~g~~i------~~~~~~~~~~~~Lk~g~~Lc~~ki~~K--------------yd~--- 59 (242)
.++..+|++++++.+..||...+++.- +.+....++.+.|+||++||+ +++.. ..+
T Consensus 15 ~~~~~~~~~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~-Lle~l~~~~v~~~~i~~~~~~~~~~ 93 (275)
T 1aoa_A 15 EGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCK-MINLSVPDTIDERAINKKKLTPFII 93 (275)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHH-HHHHHSTTSSCGGGSCCSSCCHHHH
T ss_pred CCCccccCHHHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHH-HHHHhcCCCCCccccCCCCCCHHHH
Confidence 568899999999999999999998742 222234589999999999995 33210 000
Q ss_pred --------------------------------------------------------------------------HHHHHH
Q psy6125 60 --------------------------------------------------------------------------ELAQEC 65 (242)
Q Consensus 60 --------------------------------------------------------------------------e~~~e~ 65 (242)
..++.+
T Consensus 94 ~eNv~~aL~~~k~~g~~l~~I~~~DIvdg~~~liLgLlw~li~~~~~~~I~~~~~~~l~~ll~~ge~~~~~~~~s~~~~L 173 (275)
T 1aoa_A 94 QENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEELL 173 (275)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSSCTTCC--------CHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccCCCHHHHHcCcHHHHHHHHHHHHHHhhhcccccccChHHHHhhccCCchhhhhccCHHHHH
Confidence 012346
Q ss_pred HHHHHHHhCC-CCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcc------ccc-cCCccchhhhhHHHHHHHHHHcCCC
Q psy6125 66 LEWIREITGE-NIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVK------KIN-VSTMAFKCMENINCFLDVAREMGVP 137 (242)
Q Consensus 66 ~~WI~~vlg~-~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~------ki~-~~~~~f~~~ENI~~FL~ac~~lGv~ 137 (242)
..|....+.. ..+ ...+|-..++||+++|.|++.+.|+.++ -+. .+...-...+|....++.++++|++
T Consensus 174 L~W~n~~l~~~g~~---~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~lGi~ 250 (275)
T 1aoa_A 174 LRWANFHLENSGWQ---KINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCR 250 (275)
T ss_dssp HHHHHHHHHHTTCC---CCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHhcCCC---cchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHHcCCC
Confidence 7777765421 111 1467888899999999999999998553 122 1112234678999999999999998
Q ss_pred CcCccccchhhcccChhHH
Q psy6125 138 AQETFQTVDLWERQNLNSV 156 (242)
Q Consensus 138 ~~~lF~t~DL~E~kn~~~V 156 (242)
. +..+.|+.+. |...|
T Consensus 251 ~--~l~peDi~~~-~~k~i 266 (275)
T 1aoa_A 251 Q--FVTPADVVSG-NPKLN 266 (275)
T ss_dssp C--SCCHHHHHTT-CHHHH
T ss_pred C--cCCHHHcCCC-ChhHH
Confidence 6 7899999975 54433
No 31
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=98.84 E-value=7.2e-09 Score=82.82 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhCC-CCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcc--ccc-cCCccchhhhhHHHHHHHHHHcCCC
Q psy6125 62 AQECLEWIREITGE-NIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVK--KIN-VSTMAFKCMENINCFLDVAREMGVP 137 (242)
Q Consensus 62 ~~e~~~WI~~vlg~-~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~--ki~-~~~~~f~~~ENI~~FL~ac~~lGv~ 137 (242)
++....||+..+.. .+ ...++.+.|+||++||+|++.+.|..++ +++ .+.+.|+.+||++..|++++..|++
T Consensus 24 ~ktft~WiN~~L~~~~~----~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~lk~~gi~ 99 (131)
T 2vzc_A 24 KKTLITFVNKHLNKLNL----EVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLE 99 (131)
T ss_dssp HHHHHHHHHHHHGGGTC----CCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCC----cccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 66799999998753 23 2578999999999999999999998774 665 5677899999999999999999998
Q ss_pred CcCccccchhhcccChhHHHHHHHHHHHh
Q psy6125 138 AQETFQTVDLWERQNLNSVVICLQSLGRK 166 (242)
Q Consensus 138 ~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~ 166 (242)
-.. ..+.|+.++. ...++.-|..|-+.
T Consensus 100 l~~-I~~~DIvdGn-~kliLgLiW~li~~ 126 (131)
T 2vzc_A 100 KPK-PRPEDIVNCD-LKSTLRVLYNLFTK 126 (131)
T ss_dssp CCS-SCHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred cCC-CCHHHhhCCC-HHhHHHHHHHHHHH
Confidence 765 6899999984 66666666666543
No 32
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=98.79 E-value=2.1e-09 Score=87.22 Aligned_cols=49 Identities=31% Similarity=0.480 Sum_probs=41.7
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCCCC-CCCchhHHHHhhcchhhhhhhhcc
Q psy6125 6 NSKYSEELAQECLEWIREITGENIDT-SGNMDNFYEILKDGTLLCKTTINS 55 (242)
Q Consensus 6 ~~K~d~~~~~e~~~WI~~~~g~~i~~-~~~~~~~~~~Lk~g~~Lc~~ki~~ 55 (242)
++|||+++++|+++||++++|+++++ +.+.++|.+.|+||++||+ ++|.
T Consensus 3 ~~~y~~~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCk-L~N~ 52 (144)
T 1ujo_A 3 SGSSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSK-LVNS 52 (144)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHH-HHHH
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHH-HHHH
Confidence 68999999999999999999999873 2344689999999999995 5544
No 33
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=98.73 E-value=2.5e-08 Score=87.65 Aligned_cols=153 Identities=16% Similarity=0.288 Sum_probs=105.8
Q ss_pred hccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhccc-------c--------------------
Q psy6125 5 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSK-------Y-------------------- 57 (242)
Q Consensus 5 ~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~K-------y-------------------- 57 (242)
.+++|++.++.....||...+++... ...++.+.|+||++||+ +++.. +
T Consensus 20 ~~~~~~~~q~~~f~~WiN~~L~~~~~---~v~~l~~dl~DGv~L~~-Lle~l~~~~v~k~~~~~~~~~~~eNi~~aL~~~ 95 (254)
T 1wku_A 20 LDPAWEKQQRKTFTAWCNSHLRKAGT---QIENIEEDFRNGLKLML-LLEVISGERLPRPDKGKMRFHKIANVNKALDFI 95 (254)
T ss_dssp ---CHHHHHHHHHHHHHHHHHGGGTC---CCSCTTTTTTTSHHHHH-HHHHHHCSCCCCCCSCCSHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHccccCC---CccCHHHHccCHHHHHH-HHHHhCcCCCCCCCCCccHHHHHHhHHHHHHHH
Confidence 46788899999999999999975422 22478999999999995 33210 0
Q ss_pred ----------cH--------------------------------HHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHH
Q psy6125 58 ----------SE--------------------------------ELAQECLEWIREITGENIDTSGNMDNFYEILKDGTL 95 (242)
Q Consensus 58 ----------d~--------------------------------e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvv 95 (242)
.+ ..++.+..|+...+.. .+ .....+|-..++||.+
T Consensus 96 k~~gv~lv~I~~~DIvdG~~kliLgLlW~li~~~~i~~i~~~~~~~~~~LL~W~~~~~~~-y~-~v~v~nFs~s~~DG~a 173 (254)
T 1wku_A 96 ASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAP-YR-NVNVQNFHTSWKDGLA 173 (254)
T ss_dssp HTTTCCCCSCCHHHHHHCCHHHHHHHHHHHHHHHHTTTCEETTEEHHHHHHHHHHHHHTT-CT-TCCCCSSSGGGTTSHH
T ss_pred HHcCCCccCCCHHHHhccchHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHccC-CC-CCcCCCCccchhhHHH
Confidence 00 1234688999887642 11 0135688889999999
Q ss_pred HHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHHH-cCCCCcCccccchhhccc--ChhHHHHHHHHHHHhh
Q psy6125 96 LCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVARE-MGVPAQETFQTVDLWERQ--NLNSVVICLQSLGRKA 167 (242)
Q Consensus 96 LCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~~-lGv~~~~lF~t~DL~E~k--n~~~Vv~cL~aL~~~a 167 (242)
+|.|++.+.|+.+. ... -.+-...+|...-++.|++ +|+|. +..+.|+.+.. |-..|+.-+..|-...
T Consensus 174 ~~aLi~~~~P~~id-~~~-l~~~~~~~n~~~a~~~A~~~lGi~~--~l~peDiv~~~~pD~k~imtyva~l~~~~ 244 (254)
T 1wku_A 174 LCALIHRHRPDLID-YAK-LRKDDPIGNLNTAFEVAEKYLDIPK--MLDAEDIVNTPKPDEKAIMTYVSCFYHAF 244 (254)
T ss_dssp HHHHHHHHCTTSCC-GGG-CCTTCHHHHHHHHHHHHHHHSCCCC--CSCHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccc-ccc-cCcCCHHHHHHHHHHHHHHHcCCCC--cCCHHHHhccCCCcHHHHHHHHHHHHHHh
Confidence 99999999999873 111 0112357899999999975 99996 78999998765 4466666666555443
No 34
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=98.73 E-value=3.2e-08 Score=94.75 Aligned_cols=99 Identities=19% Similarity=0.319 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--cccccC--CccchhhhhHHHHHHHHHHcCC
Q psy6125 61 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKINVS--TMAFKCMENINCFLDVAREMGV 136 (242)
Q Consensus 61 ~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~~~--~~~f~~~ENI~~FL~ac~~lGv 136 (242)
.++....||+..+. + ....+|.+.|+||++||+|++.+.|+.+ ++++.+ ++.|+++||++.+|++++..|+
T Consensus 277 q~ktf~~WiN~~~~-~----~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~r~~~leNv~~aL~~~k~~~v 351 (506)
T 1pxy_A 277 DERCYRLWINSLGI-D----SYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKF 351 (506)
T ss_dssp HHHHHHHHHTTTTC-S----SCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCC-C----CCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 45678999999753 2 2357899999999999999999999987 456554 5789999999999999999999
Q ss_pred CCcCccccchhhcccChhHHHHHHHHHHHh
Q psy6125 137 PAQETFQTVDLWERQNLNSVVICLQSLGRK 166 (242)
Q Consensus 137 ~~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~ 166 (242)
+-.. ..+.|++++. ...++.-|..|.|+
T Consensus 352 ~l~~-I~~~dIvdg~-~kl~L~Liw~lir~ 379 (506)
T 1pxy_A 352 SLVN-VAGNDIVQGN-KKLILGLLWQLMRF 379 (506)
T ss_dssp CCCS-CCHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred cccC-CCHHHHhcCC-HHHHHHHHHHHHHH
Confidence 8765 6889999984 56666666666543
No 35
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=98.50 E-value=1.8e-07 Score=81.52 Aligned_cols=151 Identities=19% Similarity=0.312 Sum_probs=106.2
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCC----CCCCCCchhHHHHhhcchhhhhhhhccc-------------------------
Q psy6125 6 NSKYSEELAQECLEWIREITGEN----IDTSGNMDNFYEILKDGTLLCKTTINSK------------------------- 56 (242)
Q Consensus 6 ~~K~d~~~~~e~~~WI~~~~g~~----i~~~~~~~~~~~~Lk~g~~Lc~~ki~~K------------------------- 56 (242)
+.+++..++.....||...++.. +.. ...++.+.|+||++||+ +++..
T Consensus 6 ~~e~~~~q~~~f~~WiN~~L~~~~~~~~~~--~v~dl~~dl~DG~~L~~-Lle~l~~~~~~~~~~~~~~~~~eNv~~aL~ 82 (245)
T 1sh5_A 6 FDERDRVQKKTFTKWVNKHLIKHWRAEAQR--HISDLYEDLRDGHNLIS-LLEVLSGDSLPREKGRMRFHKLQNVQIALD 82 (245)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCSSGGGCC--CCSCTTTTTTTSHHHHH-HHHHHHCCCCCCCCCCSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhccccccccCCC--CccchHhhccCHHHHHH-HHHHhcCccccCCCCcchHHHHHhHHHHHH
Confidence 35677888889999999999874 322 23478999999999995 33210
Q ss_pred -----------------------------------cc------------HHHHHHHHHHHHHHhCCCCCCCCChhhHHHH
Q psy6125 57 -----------------------------------YS------------EELAQECLEWIREITGENIDTSGNMDNFYEI 89 (242)
Q Consensus 57 -----------------------------------yd------------~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~ 89 (242)
|. ...++.+..|+...+.. .+ .....+|-..
T Consensus 83 ~~k~~g~~l~~I~~~DIvdg~~k~iLgLlw~li~~~~i~~i~~~g~~~~~~~~~~LL~W~~~~~~~-~~-~~~v~nF~~s 160 (245)
T 1sh5_A 83 YLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEG-YQ-GLRCDNFTTS 160 (245)
T ss_dssp HHHHTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHTTTTCCCTTCCSSCCHHHHHHHHHHHHTTT-ST-TCCCCCSSGG
T ss_pred HHHHcCCcccCCChHhhhcccHHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHhcc-CC-CcccCCcccc
Confidence 00 01234588999887753 11 1135678888
Q ss_pred hhhcHHHHHHHHhhcCCCcc--ccccCCccchhhhhHHHHHHHHHH-cCCCCcCccccchhhccc-ChhHHHHHHHHHHH
Q psy6125 90 LKDGTLLCKLVNDLKPNSVK--KINVSTMAFKCMENINCFLDVARE-MGVPAQETFQTVDLWERQ-NLNSVVICLQSLGR 165 (242)
Q Consensus 90 LrDGvvLCkL~N~l~Pg~i~--ki~~~~~~f~~~ENI~~FL~ac~~-lGv~~~~lF~t~DL~E~k-n~~~Vv~cL~aL~~ 165 (242)
.+||.++|.|++.+.|+.+. .+.. -...+|....++.|++ +|+|. +..+.|+.+.+ |-..|+.-+..|-.
T Consensus 161 ~~DG~a~~aLi~~~~P~~i~~~~l~~----~~~~~n~~~a~~~a~~~lGi~~--~l~peDi~~~~pd~k~i~tyva~l~~ 234 (245)
T 1sh5_A 161 WRDGRLFNAIIHRHKPMLIDMNKVYR----QTNLENLDQAFSVAERDLGVTR--LLDPEDVDVPQPDEKSIITYVSSLYD 234 (245)
T ss_dssp GTTSHHHHHHHHTTCTTTCCHHHHHH----SCHHHHHHHHHHHHHHHHCCCC--CCCHHHHSSSSCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHCCCCCCHHHccc----CCHHHHHHHHHHHHHHhCCCCc--cCCHHHhccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999874 1211 1357899999999985 99995 67999987653 65666666665655
Q ss_pred hh
Q psy6125 166 KA 167 (242)
Q Consensus 166 ~a 167 (242)
..
T Consensus 235 ~~ 236 (245)
T 1sh5_A 235 AM 236 (245)
T ss_dssp HC
T ss_pred Hc
Confidence 43
No 36
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=98.49 E-value=2.1e-07 Score=85.28 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcc-ccc-cCCccchhhhhHHHHHHHHHHcCCCC
Q psy6125 61 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVK-KIN-VSTMAFKCMENINCFLDVAREMGVPA 138 (242)
Q Consensus 61 ~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~-ki~-~~~~~f~~~ENI~~FL~ac~~lGv~~ 138 (242)
.++....||+..|...- ....|+.+.|+||++||+|++.|.+..+. +++ .+.+.++.+||++.-|++++..|+.-
T Consensus 18 Q~ktFt~WiN~~L~~~~---~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~~g~~l 94 (347)
T 4b7l_A 18 QQNTFTRWCNEHLKSVN---KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKL 94 (347)
T ss_dssp HHHHHHHHHHHHHGGGT---CCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhhCcCC---CCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHHhcccc
Confidence 35678999999874321 13578999999999999999999998874 444 56778999999999999999999987
Q ss_pred cCccccchhhcccChhHHHHHHHHHHHhhhh
Q psy6125 139 QETFQTVDLWERQNLNSVVICLQSLGRKASI 169 (242)
Q Consensus 139 ~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a~~ 169 (242)
.. ..+.|+.++ |...++.-|..|-+.-|+
T Consensus 95 v~-i~~~DIvdG-n~~liLgLiW~li~~~~i 123 (347)
T 4b7l_A 95 VS-IDSKAIVDG-NLKLILGLVWTLILHYSI 123 (347)
T ss_dssp SS-CCHHHHHTT-CHHHHHHHHHHHHHHHHT
T ss_pred CC-CCcchhhcC-CHhhHHHHHHHHHHHHhh
Confidence 66 789999998 578888888888876643
No 37
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=98.48 E-value=3.5e-07 Score=79.82 Aligned_cols=135 Identities=20% Similarity=0.258 Sum_probs=94.8
Q ss_pred hccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhc--------cccc--H---------------
Q psy6125 5 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTIN--------SKYS--E--------------- 59 (242)
Q Consensus 5 ~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~--------~Kyd--~--------------- 59 (242)
.+++|+..++.....||...+++.-. ...++.+.|+||++||+ +++ .++. +
T Consensus 13 ~~~~~~~~q~~~f~~WiN~~L~~~~~---~v~dl~~dL~DGv~L~~-Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~ 88 (245)
T 2wa7_A 13 EDAPWKKIQQNTFTRWCNEHLKCVNK---RIGNLQTDLSDGLRLIA-LLEVLSQKRMYRKYHQRPTFRQMQLENVSVALE 88 (245)
T ss_dssp --CGGGGHHHHHHHHHHHHHHGGGTC---CCSCTTTTTTTSHHHHH-HHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhccccCC---CccCHHHHcccHHHHHH-HHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHH
Confidence 46799999999999999999874321 12367889999999995 333 1110 0
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHHhCCCCCCCCChhh
Q psy6125 60 ------------------------------------------------------ELAQECLEWIREITGENIDTSGNMDN 85 (242)
Q Consensus 60 ------------------------------------------------------e~~~e~~~WI~~vlg~~~~~~~~~~~ 85 (242)
..++.+..|....+.. ....+
T Consensus 89 ~~k~~g~~lv~I~~~DIvdG~~kliLgLlW~li~~~~i~~~~~~~~~~~~~~~~~~~~~LL~W~~~~~~~-----~~v~n 163 (245)
T 2wa7_A 89 FLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPY-----LPITN 163 (245)
T ss_dssp HHHHTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHHTTSSCCSSCC----CCCCHHHHHHHHHHHHSTT-----SCCCC
T ss_pred HHHHcCCcccCCCHHHhhCCCHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHhCCC-----CCCCC
Confidence 0124555666555421 13467
Q ss_pred HHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHHH-cCCCCcCccccchhhccc
Q psy6125 86 FYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVARE-MGVPAQETFQTVDLWERQ 151 (242)
Q Consensus 86 f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~~-lGv~~~~lF~t~DL~E~k 151 (242)
|-...+||.++|.|++.+.|+.++..... ..-...+|...-++.+++ +|+|. +..+.|+.+++
T Consensus 164 Fs~s~~dG~a~~aLi~~~~P~~i~~~~~l-~~~~~~~n~~~a~~~A~~~lGi~~--~l~peDi~~~~ 227 (245)
T 2wa7_A 164 FNQNWQDGKALGALVDSCAPGLCPDWESW-DPQKPVDNAREAVQQADDWLGVPQ--VITPEEIIHPD 227 (245)
T ss_dssp SSGGGTTSHHHHHHHHHHSTTSSTTGGGS-CTTCHHHHHHHHHHHHHHHSCCCC--SSCHHHHTCTT
T ss_pred CcccchhhHHHHHHHHHHCcccccccccc-CcccHHHHHHHHHHHHHHhCCCCc--cCCHHHhccCC
Confidence 88889999999999999999987543321 122468899999999987 99995 78999999853
No 38
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=98.45 E-value=3.3e-08 Score=83.65 Aligned_cols=54 Identities=22% Similarity=0.449 Sum_probs=45.2
Q ss_pred CcchhccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 1 MSDRINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 1 ~~~K~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
.++|++.+|++++ +++++||++++|++++. .++|.+.|+||++||+ +.++..|.
T Consensus 15 ~~~k~a~~y~~~~-~e~~~WIe~~lg~~lp~---~~~f~~~LrDGvvLCk--L~N~l~P~ 68 (190)
T 2rr8_A 15 RRQNVAYEYLCHL-EEAKRWMEACLGEDLPP---TTELEEGLRNGVYLAK--LGNFFSPK 68 (190)
T ss_dssp CSCHHHHHHHHHH-HHHHHHHHHHSCCCCCC---HHHHHHHHSSHHHHHH--HHHHSCTT
T ss_pred HHHHHHHhhcHHH-HHHHHHHHHHhCCCCCC---hhHHHHHHcchhhHHH--HHHHhCCC
Confidence 3678999999999 99999999999998864 3589999999999995 44445554
No 39
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.34 E-value=1.3e-07 Score=80.91 Aligned_cols=54 Identities=20% Similarity=0.423 Sum_probs=44.1
Q ss_pred cchhccCCCH-HHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 2 SDRINSKYSE-ELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 2 ~~K~~~K~d~-~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
++|+..+|+. ++++|+++||+++++++++. .++|.+.|+||++||+ +.+++.|.
T Consensus 44 ~rk~~~~ye~l~~~~e~~~WIe~~l~~~l~~---~~~f~~~LrDGvvLCk--LiN~l~P~ 98 (203)
T 1p5s_A 44 QRETLQAYDYLCRVDEAKKWIEECLGTDLGP---TSTFEQSLRNGVVLAL--LVQKFQPD 98 (203)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHTSCCCC---GGGHHHHHTTSHHHHH--HHHHHCTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhCCCCCC---hHHHHHHHcchHHHHH--HHHHhCCC
Confidence 5678899999 89999999999999999863 3589999999999995 44444443
No 40
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=98.30 E-value=8.3e-07 Score=79.87 Aligned_cols=152 Identities=20% Similarity=0.328 Sum_probs=105.6
Q ss_pred chhccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhccc--------------------------
Q psy6125 3 DRINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSK-------------------------- 56 (242)
Q Consensus 3 ~K~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~K-------------------------- 56 (242)
.|++++|+..+++....||...++..-. ...++.+.|+||++||+ +++..
T Consensus 64 ~~~~~e~~~vQkktft~WINs~L~~~~~---~V~dL~~DL~DGvvL~~-Lle~L~~~~l~~~~~~~r~~kleNvn~aL~~ 139 (296)
T 3f7p_A 64 IRIADERDRVQKKTFTKWVNKHLIKAQR---HISDLYEDLRDGHNLIS-LLEVLSGDSLPREKGRMRFHKLQNVQIALDY 139 (296)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHGGGTC---CCSCTTTTTTTSHHHHH-HHHHHHCCCCCCCCCSSHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHcccCCC---CcccHHHHHhhHHHHHH-HHHHhcCCcccccCCcChhhhhhhHHHHHHH
Confidence 4678888999999999999999874321 12468888999999995 32210
Q ss_pred ----------------------------------cc------------HHHHHHHHHHHHHHhCCCCCCCCChhhHHHHh
Q psy6125 57 ----------------------------------YS------------EELAQECLEWIREITGENIDTSGNMDNFYEIL 90 (242)
Q Consensus 57 ----------------------------------yd------------~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~L 90 (242)
|. ...++.+..|....+.. .+ .....+|-...
T Consensus 140 lk~~gv~lv~I~~~DIvdGn~kliLgLlW~Li~~~~i~~i~~~g~~~~~s~k~~LL~W~n~~~~~-y~-~v~I~nFs~sw 217 (296)
T 3f7p_A 140 LRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEG-YQ-GLRCDNFTSSW 217 (296)
T ss_dssp HHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHTTTTCCCSSCCTTSCHHHHHHHHHHHHTTT-ST-TCCCCCSSGGG
T ss_pred HHHhCccccCCChhhhhccchHHHHHHHHHhhcccceeeeeccCCcccCCHHHHHHHHHHHHhcC-CC-CCcCCCccccc
Confidence 00 01234578888877642 11 12356788899
Q ss_pred hhcHHHHHHHHhhcCCCcc--ccccCCccchhhhhHHHHHHHH-HHcCCCCcCccccchhhcc-cChhHHHHHHHHHHHh
Q psy6125 91 KDGTLLCKLVNDLKPNSVK--KINVSTMAFKCMENINCFLDVA-REMGVPAQETFQTVDLWER-QNLNSVVICLQSLGRK 166 (242)
Q Consensus 91 rDGvvLCkL~N~l~Pg~i~--ki~~~~~~f~~~ENI~~FL~ac-~~lGv~~~~lF~t~DL~E~-kn~~~Vv~cL~aL~~~ 166 (242)
+||.++|.|++.+.|+.+. .+.. -...+|+..-++.+ +.+|++. +..+.|+... -|-..|+.-|..|-+.
T Consensus 218 ~DG~af~aLI~~~~P~lid~~~l~~----~~~~~N~~~Af~~Ae~~LGi~~--ll~pEDi~~~~pDeksimtyvs~ly~~ 291 (296)
T 3f7p_A 218 RDGRLFNAIIHRHKPLLIDMNKVYR----QTNLENLDQAFSVAERDLGVTR--LLDPEDVDVPQPDEKSIITYVSSLYDA 291 (296)
T ss_dssp TTSHHHHHHHHHHCGGGCCHHHHTT----SCHHHHHHHHHHHHHHHHCCCC--CCCHHHHSSSSCCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHCcCccCHHHcCc----ccHHHHHHHHHHHHHHhCCCCc--cCCHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999998773 1222 13588999999999 5799985 6789998664 3445565555555443
No 41
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=98.29 E-value=9.2e-07 Score=77.14 Aligned_cols=154 Identities=17% Similarity=0.291 Sum_probs=105.7
Q ss_pred hccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcc-----------------------------
Q psy6125 5 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINS----------------------------- 55 (242)
Q Consensus 5 ~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~----------------------------- 55 (242)
.++++++.++.....||...++....+ ...++.+.|+||++||+ +++.
T Consensus 9 ~~~e~~~~q~~~f~~WiN~~L~~~~~~--~v~dl~~dl~DG~~L~~-Lle~l~~~~~~~~~~~~~~~~~eNv~~aL~~~k 85 (246)
T 1dxx_A 9 DSYEREDVQKKTFTKWVNAQFSKFGKQ--HIENLFSDLQDGRRLLD-LLEGLTGQKLPKEKGSTRVHALNNVNKALRVLQ 85 (246)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTCC--CCSCTTTTTTTSHHHHH-HHHHHHSCCCCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhccccCCC--CccCHHHHhCcHHHHHH-HHHHHcCCcCCCCCCccHHHHHHHHHHHHHHHH
Confidence 567899999999999999999854311 12468889999999995 2221
Q ss_pred -------------------------------cccH--------------HHHHHHHHHHHHHhCCCCCCCCChhhHHHHh
Q psy6125 56 -------------------------------KYSE--------------ELAQECLEWIREITGENIDTSGNMDNFYEIL 90 (242)
Q Consensus 56 -------------------------------Kyd~--------------e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~L 90 (242)
+|.. ..++.+..|+...+.. .+ .....+|-..+
T Consensus 86 ~~g~~l~~I~~~DIvdg~~~liL~Llw~li~~~~i~~~~~e~~~~~~~~~~~~~LL~W~~~~~~~-~~-~~~i~nFs~s~ 163 (246)
T 1dxx_A 86 NNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQVKNVMKNIMAGLQQTNSEKILLSWVRQSTRN-YP-QVNVINFTTSW 163 (246)
T ss_dssp HTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CT-TCCCCSSSGGG
T ss_pred HcCCccccCCHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccHHHHHHHHHHHHhcc-CC-CCCcCCCcccc
Confidence 1111 0245678999987753 21 12357888999
Q ss_pred hhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHH-HcCCCCcCccccchhhccc-ChhHHHHHHHHHHHh
Q psy6125 91 KDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAR-EMGVPAQETFQTVDLWERQ-NLNSVVICLQSLGRK 166 (242)
Q Consensus 91 rDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~-~lGv~~~~lF~t~DL~E~k-n~~~Vv~cL~aL~~~ 166 (242)
+||.++|.|++.+.|+.+. +......-...+|....++.++ .+|+|. +..+.|+.+++ |-..|+.-+..|-..
T Consensus 164 ~DG~a~~aLi~~~~P~li~-~~~~~~~~~~~~n~~~a~~~A~~~lGi~~--~l~peDi~~~~pD~k~i~tyva~l~~~ 238 (246)
T 1dxx_A 164 SDGLALNALIHSHRPDLFD-WNSVVSQQSATQRLEHAFNIARYQLGIEK--LLDPEDVDTTYPDKKSILMYITSLFQV 238 (246)
T ss_dssp TTSHHHHHHHHHHCGGGSC-HHHHHTCCCHHHHHHHHHHHHHHTTCCCC--CCCHHHHSSSSCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHCcCccc-hhhhcccCCHHHHHHHHHHHHHHhCCCCc--cCCHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 9999999999999998773 1110001234789999999997 799995 78999997653 225555555545443
No 42
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=98.28 E-value=1.7e-07 Score=79.60 Aligned_cols=53 Identities=23% Similarity=0.432 Sum_probs=43.5
Q ss_pred cchhccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 2 SDRINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 2 ~~K~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
++|++.+|+...+ |++.||++++|++++. .++|.+.|+||++||+ + .++..|.
T Consensus 38 ~~~~a~eyl~~~~-e~~~WIe~~lg~~l~~---~~~l~~~LrdGvvLCk-L-~N~l~Pg 90 (193)
T 3i6x_A 38 RQNVAYEYLCHLE-EAKRWMEACLGEDLPP---TTELEEGLRNGVYLAK-L-GNFFSPK 90 (193)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHSSCCCC---GGGHHHHHTTSHHHHH-H-HHHHCTT
T ss_pred HhhHHHHHHHHHH-HHHHHHHHHhCCCCCC---hHHHHHHhccHHHHHH-H-HHHHCCC
Confidence 3678889999999 9999999999999964 2479999999999995 4 4445444
No 43
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=98.22 E-value=1.7e-07 Score=72.33 Aligned_cols=42 Identities=38% Similarity=0.672 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccH
Q psy6125 11 EELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSE 59 (242)
Q Consensus 11 ~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~ 59 (242)
|++|+|+++||++++|++++. +|.+.|+||++||+ ++| +..|
T Consensus 2 ~~~e~e~~~WIe~~l~~~~~~-----~l~~~L~dGvvLCk-L~N-~l~P 43 (108)
T 1h67_A 2 PQTERQLRVWIEGATGRRIGD-----NFMDGLKDGVILCE-LIN-KLQP 43 (108)
T ss_dssp CCSSHHHHHHHHHHHSCCCCS-----CHHHHHHHCSHHHH-HHH-HHST
T ss_pred hHHHHHHHHHHHHHhCCCCcH-----HHHHHHccHHHHHH-HHH-HhCC
Confidence 467899999999999999843 79999999999995 444 4443
No 44
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=98.21 E-value=2.2e-06 Score=67.92 Aligned_cols=89 Identities=15% Similarity=0.264 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHH-HHhhhcHHHHHHHHhhcCCCcc--ccccCC-ccchhhhhHHHHHHHHHHcCCC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFY-EILKDGTLLCKLVNDLKPNSVK--KINVST-MAFKCMENINCFLDVAREMGVP 137 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~-~~LrDGvvLCkL~N~l~Pg~i~--ki~~~~-~~f~~~ENI~~FL~ac~~lGv~ 137 (242)
++++.+|.+..+...-. .....+|. ..++||+.+|.|++.+.|+.|. -+..+. ......+|....+..|+++|++
T Consensus 9 d~~ll~W~N~kl~~~g~-~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~ArklG~~ 87 (124)
T 1wjo_A 9 DDIIVNWVNRTLSEAGK-STSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGAR 87 (124)
T ss_dssp CHHHHHHHHHHHHHHTC-SCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHhcCC-CcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 56789999887642100 01256899 8999999999999999999982 222333 4567789999999999999999
Q ss_pred CcCccccchhhcccChh
Q psy6125 138 AQETFQTVDLWERQNLN 154 (242)
Q Consensus 138 ~~~lF~t~DL~E~kn~~ 154 (242)
. .-.+.|+.|. |..
T Consensus 88 ~--~l~pEDIve~-~pK 101 (124)
T 1wjo_A 88 V--YALPEDLVEV-KPK 101 (124)
T ss_dssp C--CCCHHHHHHT-CTT
T ss_pred c--ccCHHHHhcC-cch
Confidence 6 6789999998 444
No 45
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=97.99 E-value=2.3e-06 Score=85.78 Aligned_cols=150 Identities=19% Similarity=0.326 Sum_probs=102.6
Q ss_pred hccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhccc-------cc-------------------
Q psy6125 5 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSK-------YS------------------- 58 (242)
Q Consensus 5 ~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~K-------yd------------------- 58 (242)
++++|++..+.....||...++....+ ..++.+.|+||++||+ +++.. +.
T Consensus 1 ~~~~~~~~q~~~f~~Win~~L~~~~~~---v~~l~~dl~DG~~L~~-l~e~l~~~~~~~~~~~~~~~~~~eN~~~~l~~~ 76 (863)
T 1sjj_A 1 LDPAWEKQQRKTFTAWCNSHLRKAGTQ---IENIEEDFRDGLKLML-LLEVISGERLAKPERGKMRVHKISNVNKALDFI 76 (863)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHCSC---CCCCSSTTSSCHHHHH-HHHHTSCCCCCCSCCCSSHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccCCCC---ccCHHHHhcCHHHHHH-HHHHhCCCceeCCCCCccHHHHHHHHHHHHHHH
Confidence 478999999999999999998643211 2368889999999995 33211 00
Q ss_pred -----------HH--------------------------------HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHH
Q psy6125 59 -----------EE--------------------------------LAQECLEWIREITGENIDTSGNMDNFYEILKDGTL 95 (242)
Q Consensus 59 -----------~e--------------------------------~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvv 95 (242)
++ ..+.+..|+...+.. .+ .....+|-..++||.+
T Consensus 77 ~~~g~~~~~i~~~di~~g~~~~~l~l~w~l~~~~~~~~~~~~~~~~~~~ll~W~~~~~~~-~~-~~~v~nf~~s~~dg~~ 154 (863)
T 1sjj_A 77 ASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWYQRKTAP-YK-NVNIQNFHISWKDGLG 154 (863)
T ss_dssp HHTTCCCTTCCSHHHHTTCHHHHHHHHHHHHSCCCCCCCCCCCCCSTTTTHHHHHHHHTT-ST-TCCCCSSSGGGTTSHH
T ss_pred HHcCCccCCCChHHhhcCCHHHHHHHHHHHHHHHhhcccchhccchHHHHHHHHHHhccC-CC-CCCCCCCccccccHHH
Confidence 00 012356666655521 11 0135688889999999
Q ss_pred HHHHHHhhcCCCcc--ccccCCccchhhhhHHHHHHHHHH-cCCCCcCccccchhhccc--ChhHHHHHHHHHHHh
Q psy6125 96 LCKLVNDLKPNSVK--KINVSTMAFKCMENINCFLDVARE-MGVPAQETFQTVDLWERQ--NLNSVVICLQSLGRK 166 (242)
Q Consensus 96 LCkL~N~l~Pg~i~--ki~~~~~~f~~~ENI~~FL~ac~~-lGv~~~~lF~t~DL~E~k--n~~~Vv~cL~aL~~~ 166 (242)
+|.|++.+.|+.|. .+.. -...+|....+..+++ +|+|. +..+.|+.+.. |-..|+..|..|-..
T Consensus 155 ~~~li~~~~p~~~~~~~~~~----~~~~~n~~~a~~~a~~~lg~~~--~l~~ed~~~~~~pd~~~~~~y~~~l~~~ 224 (863)
T 1sjj_A 155 FCALIHRHRPELIDYGKLRK----DDPLTNLNTAFDVAEKYLDIPK--MLDAEDIVGTARPDEKAIMTYVSSFYHA 224 (863)
T ss_dssp HHHHHHTTCCSSSCSGGGGS----CCCGGGCTHHHHHHHHHHCCCC--SCCHHHHTTCSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHhCCCCcChhhCCC----CCHHHHHHHHHHHHHHhCCCCC--ccCHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999873 1211 2357899999999975 99985 78999998754 446666655555443
No 46
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.98 E-value=3.7e-06 Score=69.11 Aligned_cols=42 Identities=24% Similarity=0.539 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccH
Q psy6125 13 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSE 59 (242)
Q Consensus 13 ~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~ 59 (242)
.++|+++||++++|++++. .++|.+.|+||++||+ ++ ++..|
T Consensus 12 ~~~e~~~WIe~~l~~~l~~---~~~l~~~LkdGvvLCk-L~-N~l~P 53 (159)
T 1p2x_A 12 RVDEAKKWIEECLGTDLGP---TSTFEQSLRNGVVLAL-LV-QKFQP 53 (159)
T ss_dssp HHHHHHHHHHHHHTSCCCC---GGGHHHHTTTSHHHHH-HH-HHHCT
T ss_pred HHHHHHHHHHHHhCCCCCC---hHHHHHHHcchHHHHH-HH-HHhCC
Confidence 4678999999999999863 3589999999999995 44 43443
No 47
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=5.1e-05 Score=59.33 Aligned_cols=100 Identities=17% Similarity=0.285 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHHHcCCCCcCc
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAREMGVPAQET 141 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~~lGv~~~~l 141 (242)
++.+..|+...+..- + .....+|-...+||..+|.|++.+.|+.|. ...- ..-...+|...-++.++++|+|. +
T Consensus 11 ~~~LL~W~~~~~~~y-~-~v~v~nFs~sw~dG~af~aLi~~~~P~lid-~~~l-~~~~~~~n~~~af~~a~~LGi~~--l 84 (119)
T 2d89_A 11 SQSLLVWCKEVTKNY-R-GVKITNFTTSWRNGLSFCAILHHFRPDLID-YKSL-NPQDIKENNKKAYDGFASIGISR--L 84 (119)
T ss_dssp HHHHHHHHHHHTTTC-S-SCCCCCSSHHHHTTHHHHHHHHHHCTTTSC-GGGC-CTTCSHHHHHHHHHHHHHHTCCC--C
T ss_pred HHHHHHHHHHHhccC-C-CCCCCCccccccccHHHHHHHHHHCcCcCC-hhhh-cccCHHHHHHHHHHHHHHhCCCc--c
Confidence 567899999988531 1 123578999999999999999999999872 1111 01235789988888889999996 7
Q ss_pred cccchhhcc--cChhHHHHHHHHHHHhh
Q psy6125 142 FQTVDLWER--QNLNSVVICLQSLGRKA 167 (242)
Q Consensus 142 F~t~DL~E~--kn~~~Vv~cL~aL~~~a 167 (242)
.++.|+.+. -|-..|+.-+..|-...
T Consensus 85 l~peDi~~~~~pD~ksvmtYvs~l~~~f 112 (119)
T 2d89_A 85 LEPSDMVLLAIPDKLTVMTYLYQIRAHF 112 (119)
T ss_dssp SCHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHhccCCCcHHHHHHHHHHHHHHc
Confidence 899999865 36666666666665543
No 48
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=97.81 E-value=8.6e-05 Score=57.76 Aligned_cols=99 Identities=19% Similarity=0.318 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHHH-cCCCCcC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVARE-MGVPAQE 140 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~~-lGv~~~~ 140 (242)
++.+..|....+.. .+ .....+|-...+||..+|.|++.+.|+.|. ... -..-...+|+..-++.+++ +|+|.
T Consensus 9 ~~~LL~W~q~~~~~-y~-~v~v~nFs~sw~dG~af~aLih~~~P~lid-~~~-l~~~~~~~n~~~af~~Ae~~lgi~~-- 82 (116)
T 1wyl_A 9 QEELLRWCQEQTAG-YP-GVHVSDLSSSWADGLALCALVYRLQPGLLE-PSE-LQGLGALEATAWALKVAENELGITP-- 82 (116)
T ss_dssp HHHHHHHHHHHHHH-ST-TCCCSCTTTTTTSSHHHHHHHHHHCTTSCC-CSS-GGGCCHHHHHHHHHHHHHHTTCCCC--
T ss_pred HHHHHHHHHHHhcc-CC-CCCCCCccccccccHHHHHHHHHHCcCCCC-HHH-hccCCHHHHHHHHHHHHHHHcCCcc--
Confidence 56788999988742 11 013568889999999999999999999873 111 1122368999999999976 99986
Q ss_pred ccccchhhcccChhHHHHHHHHHHHh
Q psy6125 141 TFQTVDLWERQNLNSVVICLQSLGRK 166 (242)
Q Consensus 141 lF~t~DL~E~kn~~~Vv~cL~aL~~~ 166 (242)
+.++.|+.+.-|...|+.-+..|-+.
T Consensus 83 lL~peD~~~~~d~ksv~tYvs~l~~~ 108 (116)
T 1wyl_A 83 VVSAQAVVAGSDPLGLIAYLSHFHSA 108 (116)
T ss_dssp CSCHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ccCHHHHhcCCchhHHHHHHHHHHHH
Confidence 78999998876665666555555544
No 49
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=97.74 E-value=0.0002 Score=56.67 Aligned_cols=100 Identities=21% Similarity=0.321 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHHH-cCCCCcC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVARE-MGVPAQE 140 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~~-lGv~~~~ 140 (242)
++.+..|+...+.. .+ .....+|-...+||.++|.|++.+.|+.|. ... -..-...+|+..-++.+++ +|+|.
T Consensus 9 k~~LL~W~q~~~~~-y~-~v~V~nFs~sw~DG~af~aLih~~~P~lid-~~~-l~~~~~~~n~~~af~~Ae~~lgip~-- 82 (128)
T 2d87_A 9 KQMLLDWCRAKTRG-YE-HVDIQNFSSSWSDGMAFCALVHNFFPEAFD-YGQ-LSPQNRRQNFEVAFSSAETHADCPQ-- 82 (128)
T ss_dssp HHHHHHHHHHHSSS-CT-TCCCSCTTTTTTSSHHHHHHHHHHCTTTSC-STT-SCSSCHHHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHhcc-CC-CCCCCCccccccccHHHHHHHHHHCcCcCC-HHH-cCccCHHHHHHHHHHHHHHcCCCCc--
Confidence 57889999998853 11 123578999999999999999999999872 111 1123468999999999976 89986
Q ss_pred ccccchhhccc--ChhHHHHHHHHHHHhh
Q psy6125 141 TFQTVDLWERQ--NLNSVVICLQSLGRKA 167 (242)
Q Consensus 141 lF~t~DL~E~k--n~~~Vv~cL~aL~~~a 167 (242)
+.++.|+.+.. |-..|+.-+..|-+..
T Consensus 83 lL~peD~v~~~~pD~ksvmtYvs~l~~~~ 111 (128)
T 2d87_A 83 LLDTEDMVRLREPDWKCVYTYIQEFYRCL 111 (128)
T ss_dssp CSCHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHhccCCccHHHHHHHHHHHHHHH
Confidence 78999997654 4556666666555543
No 50
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=97.56 E-value=0.0004 Score=54.80 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHH-HcCCCCcC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAR-EMGVPAQE 140 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~-~lGv~~~~ 140 (242)
++.+..|+...+.. .+ .....+|-...+||..+|.|++.+.|+.|. ...- ..-...+|+..-++.++ .+|+|.
T Consensus 9 k~~LL~W~q~~~~~-y~-~v~V~nFs~sw~DG~Af~aLih~~~P~lid-~~~l-~~~~~~~n~~~af~~Ae~~Lgi~~-- 82 (127)
T 1wyq_A 9 KDALLLWCQMKTAG-YP-NVNVHNFTTSWRDGLAFNAIVHKHRPDLLD-FESL-KKCNAHYNLQNAFNLAEKELGLTK-- 82 (127)
T ss_dssp THHHHHHHHHHHHT-SS-SCCCSCSSTTSSSSHHHHHHHHHHCTTTCC-TTTS-CSSCCHHHHHHHHHHHHHTTCCCC--
T ss_pred HHHHHHHHHHHHhc-CC-CCCCCCCcccccccHHHHHHHHHHCcCcCC-HHHh-CcCCHHHHHHHHHHHHHHHcCCCc--
Confidence 45688999988642 11 013578889999999999999999999873 1110 11235789999889886 799995
Q ss_pred ccccchhhcc-cChhHHHHHHHHHHHhh
Q psy6125 141 TFQTVDLWER-QNLNSVVICLQSLGRKA 167 (242)
Q Consensus 141 lF~t~DL~E~-kn~~~Vv~cL~aL~~~a 167 (242)
++++.|+... -|-..|+.-+..|-+..
T Consensus 83 ll~~eDv~~~~pDeksimtYvs~l~~~~ 110 (127)
T 1wyq_A 83 LLDPEDVNVDQPDEKSIITYVATYYHYF 110 (127)
T ss_dssp CSCTTTSCSSSCCHHHHHHHHHHHHHHH
T ss_pred ccCHHHhccCCCcHHHHHHHHHHHHHHh
Confidence 7799998643 24455555555555443
No 51
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=97.52 E-value=0.00026 Score=55.44 Aligned_cols=100 Identities=17% Similarity=0.292 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHH-HcCCCCcC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAR-EMGVPAQE 140 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~-~lGv~~~~ 140 (242)
++.+..|....+.. .+ .....+|-...+||.++|.|++.+.|+.+. ...- ..-...+|+..-++.++ .+|+|.
T Consensus 11 ~~~LL~W~q~~~~~-y~-~v~v~nFs~sw~DG~af~aLih~~~P~lid-~~~l-~~~~~~~n~~~af~~Ae~~lgi~~-- 84 (121)
T 2d88_A 11 SSKLLGWCQRQTDG-YA-GVNVTDLTMSWKSGLALCAIIHRYRPDLID-FDSL-DEQNVEKNNQLAFDIAEKELGISP-- 84 (121)
T ss_dssp SCHHHHHHHHHSTT-SS-SCCCCCSSHHHHTSHHHHHHHHHHCTTTSC-TTTS-CTTCHHHHHHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHhcc-CC-CCCCCCchhhccccHHHHHHHHHhCcCcCC-HHHc-CccCHHHHHHHHHHHHHHHcCCCC--
Confidence 34578999998853 11 123578999999999999999999999872 1111 11235899999999987 599986
Q ss_pred ccccchhhcc--cChhHHHHHHHHHHHhh
Q psy6125 141 TFQTVDLWER--QNLNSVVICLQSLGRKA 167 (242)
Q Consensus 141 lF~t~DL~E~--kn~~~Vv~cL~aL~~~a 167 (242)
+.++.|+.+. -|-..|+.-+..|-+..
T Consensus 85 lL~peD~~~~~~pD~ksimtYvs~l~~~~ 113 (121)
T 2d88_A 85 IMTGKEMASVGEPDKLSMVMYLTQFYEMF 113 (121)
T ss_dssp SSCHHHHHHSSCCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhccCCCcHHHHHHHHHHHHHHc
Confidence 7899999853 46666766666665554
No 52
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=97.52 E-value=0.00017 Score=63.77 Aligned_cols=97 Identities=21% Similarity=0.331 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--cccc-cCCccchhhhhHHHHHHHHHHcCCC
Q psy6125 61 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKIN-VSTMAFKCMENINCFLDVAREMGVP 137 (242)
Q Consensus 61 ~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~-~~~~~f~~~ENI~~FL~ac~~lGv~ 137 (242)
.+.++..||++.+...+. . .+.|.+|.+.|+|++.|.||+| .|++ .++..+....|...+-++-.++|++
T Consensus 16 sR~elL~WiN~~L~~~~~---k----iEel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~ 88 (268)
T 2r8u_A 16 SRHDMLAWINESLQLNLT---K----IEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVD 88 (268)
T ss_dssp CHHHHHHHHHHHHTCCCC---C----GGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHhcCCcc---h----HHHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 368999999999999885 2 4568999999999999999998 4666 5566777777777777777999998
Q ss_pred CcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 138 AQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 138 ~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
. .+....|.-++ +.-=+.-|..+.++.
T Consensus 89 k--~ipV~kLvkgk-~qDNlEFlqWfkkf~ 115 (268)
T 2r8u_A 89 K--IIPVDKLVKGK-FQDNFEFVQWFKKFF 115 (268)
T ss_dssp C--CCCHHHHTTTC-HHHHHHHHHHHHHHH
T ss_pred C--ccCHHHHhccC-chhHHHHHHHHHHHH
Confidence 6 46666666665 333344455555444
No 53
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=97.48 E-value=0.00031 Score=53.99 Aligned_cols=98 Identities=15% Similarity=0.271 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHH-HcCCCCcC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAR-EMGVPAQE 140 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~-~lGv~~~~ 140 (242)
++.+..|+...+.. .+ .....+|-...+||..+|.|++.+.|+.+. ...- ..-...+|+..-++.++ .+|+|.
T Consensus 5 k~~LL~W~q~~~~~-y~-~v~v~nFs~sw~dG~af~aLih~~~P~lid-~~~l-~~~~~~~n~~~af~~Ae~~lgi~~-- 78 (109)
T 1bkr_A 5 KDALLLWCQMKTAG-YP-NVNIHNFTTSWRDGMAFNALIHKHRPDLID-FDKL-KKSNAHYNLQNAFNLAEQHLGLTK-- 78 (109)
T ss_dssp HHHHHHHHHHHTTT-CT-TCCCSSSSGGGTTSHHHHHHHHHHCGGGCC-GGGC-CTTCHHHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHcc-CC-CCCCCCCcccccccHHHHHHHHHHCcCCCC-HHHc-CcCCHHHHHHHHHHHHHHHcCCCc--
Confidence 56789999988753 21 123578999999999999999999999872 1111 11235789999888886 799995
Q ss_pred ccccchhhccc-ChhHHHHHHHHHHH
Q psy6125 141 TFQTVDLWERQ-NLNSVVICLQSLGR 165 (242)
Q Consensus 141 lF~t~DL~E~k-n~~~Vv~cL~aL~~ 165 (242)
+.++.|+..+. |-..|+.-+..+-+
T Consensus 79 ll~~eDv~~~~pD~ksi~tYvs~~~~ 104 (109)
T 1bkr_A 79 LLDPEDISVDHPDEKSIITYVVTYYH 104 (109)
T ss_dssp CCCHHHHSSSSCCHHHHHHHHHHHHH
T ss_pred cCCHHHccCCCCcHHHHHHHHHHHHH
Confidence 78899986432 33455555544443
No 54
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.41 E-value=4.1e-05 Score=60.10 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCCC--CCCchh-HHHHhhcchhhhhhhhcccccH
Q psy6125 10 SEELAQECLEWIREITGENIDT--SGNMDN-FYEILKDGTLLCKTTINSKYSE 59 (242)
Q Consensus 10 d~~~~~e~~~WI~~~~g~~i~~--~~~~~~-~~~~Lk~g~~Lc~~ki~~Kyd~ 59 (242)
.+++|+++.+||+++++.+... -.+.++ |.+.|+||++||+ ++| +..|
T Consensus 4 ~~~~e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCk-L~N-~l~P 54 (121)
T 1wyr_A 4 GSSGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCK-LIN-RLMP 54 (121)
T ss_dssp SCCSHHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHH-HHH-HHST
T ss_pred cHHHHHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHH-HHH-HhCC
Confidence 3567899999999998744321 113455 5899999999995 444 3443
No 55
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=97.40 E-value=0.00025 Score=55.33 Aligned_cols=98 Identities=21% Similarity=0.311 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcc--ccccCCccchhhhhHHHHHHHHH-HcCCC
Q psy6125 61 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVK--KINVSTMAFKCMENINCFLDVAR-EMGVP 137 (242)
Q Consensus 61 ~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~--ki~~~~~~f~~~ENI~~FL~ac~-~lGv~ 137 (242)
.++.+..|+...+..- + .....+|-...+||.++|.|++.+.|+.+. .+.. -...+|+..-++.++ .+|+|
T Consensus 9 ~~~~LL~W~q~~~~~y-~-~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~----~~~~~n~~~af~~Ae~~lgi~ 82 (118)
T 1bhd_A 9 SEKILLSWVRQTTRPY-S-QVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVK----MSPIERLEHAFSKAQTYLGIE 82 (118)
T ss_dssp HHHHHHHHHHHHHTTS-T-TCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHH----SCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhccC-C-CCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhCc----CCHHHHHHHHHHHHHHHcCCC
Confidence 4677899999988421 1 013578889999999999999999999873 2211 135789988888885 89998
Q ss_pred CcCccccchhhcc-cChhHHHHHHHHHHHh
Q psy6125 138 AQETFQTVDLWER-QNLNSVVICLQSLGRK 166 (242)
Q Consensus 138 ~~~lF~t~DL~E~-kn~~~Vv~cL~aL~~~ 166 (242)
. +.++.|+..+ -|-..|+.-+..|-+.
T Consensus 83 ~--ll~~eDv~~~~pD~ksvmtYvs~l~~~ 110 (118)
T 1bhd_A 83 K--LLDPEDVAVRLPDKKSIIMYLTSLFEV 110 (118)
T ss_dssp C--CSCHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred c--ccCHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 5 6799998654 3445565555555544
No 56
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=97.37 E-value=7.6e-05 Score=59.02 Aligned_cols=48 Identities=23% Similarity=0.460 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhc-CCCC-CCCCchhH-HHHhhcchhhhhhhhcccccHH
Q psy6125 11 EELAQECLEWIREITG-ENID-TSGNMDNF-YEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 11 ~~~~~e~~~WI~~~~g-~~i~-~~~~~~~~-~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
.+.+.|+.+||+++++ +... +..+.++| ++.|+||++||+ ++ ++..|.
T Consensus 11 ~~~~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCk-Li-N~l~Pg 61 (126)
T 2l3g_A 11 MNSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCR-LL-ERLLPG 61 (126)
T ss_dssp CCHHHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHH-HH-HHHSTT
T ss_pred HHHHHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHH-HH-HHhCCC
Confidence 3578899999999977 3311 11345577 799999999995 44 444443
No 57
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=97.24 E-value=0.00056 Score=55.27 Aligned_cols=96 Identities=18% Similarity=0.254 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--cccc-cCCccchhhhhHHHHHHHHHHcCCC
Q psy6125 61 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKIN-VSTMAFKCMENINCFLDVAREMGVP 137 (242)
Q Consensus 61 ~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~-~~~~~f~~~ENI~~FL~ac~~lGv~ 137 (242)
.+.|+..||++.+..++. . .+.|.+|.+.|+|++.|. ++| .|++ ..+..+....|...+-++-+++|++
T Consensus 7 SR~eLL~WiN~~L~~n~t---k----IE~l~sGAaYCQlmD~lf-g~i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~ 78 (145)
T 4abo_I 7 SRQELLAWINQVTSLGLT---R----IEDCGKGYAMIQIFDSIY-QDIPLKKVNFECNNEYQYINNWKVLQQVFLKKGID 78 (145)
T ss_dssp CHHHHHHHHHHHHTCCCC---S----GGGGGGSHHHHHHHHHHH-CCSCTTTSCSSCCSHHHHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHcCCCcc---h----HHHccccHHHHHHHHHHh-cCcchhhcccCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 467899999999999885 2 456899999999999999 666 4666 5677788888998888888999998
Q ss_pred CcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 138 AQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 138 ~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
.. +....|.-++ +.-=+.-|..+.+..
T Consensus 79 k~--ipV~kLvKgk-~QDNlEFlQWfkkf~ 105 (145)
T 4abo_I 79 KV--VDPERLSRCK-MQDNLEFVQWAKRFW 105 (145)
T ss_dssp CC--CCHHHHTTTC-HHHHHHHHHHHHHHH
T ss_pred Cc--cCHHHHhccc-hHhHHHHHHHHHHHH
Confidence 63 5666666665 444445555555554
No 58
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=97.10 E-value=0.0015 Score=59.62 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHHH-cCCCCcC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVARE-MGVPAQE 140 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~~-lGv~~~~ 140 (242)
++.+..|+...+.. . ...+|-...+||.++|.|++.+.|+.++....- ..-...+|...-++.+++ +|+|.
T Consensus 142 k~~LL~W~~~~~~~-~----~v~nF~~sw~DG~af~aLi~~~~P~~~~d~~~l-~~~~~~~n~~~Af~~Ae~~lGip~-- 213 (347)
T 4b7l_A 142 KQRLLGWIQNKIPY-L----PITNFNQNWQDGKALGALVDSCAPGLCPDWESW-DPQKPVDNAREAMQQADDWLGVPQ-- 213 (347)
T ss_dssp HHHHHHHHHHHCTT-S----CCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGS-CTTCHHHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHhhCCC-c----ccCCCCCCccchHHHHHHHHHhCCccccchhhc-CcCCHHHHHHHHHHHHHHhcCCCc--
Confidence 56789999876532 2 356788899999999999999999988543321 122357899988888865 99996
Q ss_pred ccccchhhccc
Q psy6125 141 TFQTVDLWERQ 151 (242)
Q Consensus 141 lF~t~DL~E~k 151 (242)
+..+.|+...+
T Consensus 214 ll~peDi~~~~ 224 (347)
T 4b7l_A 214 VITPEEIIHPD 224 (347)
T ss_dssp SSCHHHHTCTT
T ss_pred ccCHHHcCCCC
Confidence 78999998754
No 59
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=97.05 E-value=0.001 Score=58.86 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCccccccCCccchhhhhHHHHHHHHHH-cCCCCcC
Q psy6125 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVARE-MGVPAQE 140 (242)
Q Consensus 62 ~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~ki~~~~~~f~~~ENI~~FL~ac~~-lGv~~~~ 140 (242)
++.+..|....+. . ....+|-...+||..+|.|++.+.|+.++....-. .-...+|....++.+++ +|+|.
T Consensus 172 k~~LL~W~n~~~~-~----~~I~nFs~sw~DG~af~aLi~~~~P~li~d~~~l~-~~~~~~n~~~Af~~Ae~~lGi~~-- 243 (272)
T 3hoc_A 172 KQRLLGWIQNKLP-Q----LPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWD-ASKPVTNAREAMQQADDWLGIPQ-- 243 (272)
T ss_dssp HHHHHHHHHHHCT-T----SCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSC-TTCHHHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHhhCC-C----CCCCChhhcccchHHHHHHHHHhCcccccchhhcC-ccCHHHHHHHHHHHHHHhCCCCc--
Confidence 4568889887643 1 23567888899999999999999999885443211 23468999999999987 99995
Q ss_pred ccccchhhcc
Q psy6125 141 TFQTVDLWER 150 (242)
Q Consensus 141 lF~t~DL~E~ 150 (242)
+.++.|+.+.
T Consensus 244 ll~peDiv~~ 253 (272)
T 3hoc_A 244 VITPEEIVDP 253 (272)
T ss_dssp SSCHHHHTCT
T ss_pred cCCHHHhccC
Confidence 7899999885
No 60
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0024 Score=50.55 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc--cccc-cCCccchhhhhHHHHHHHHHHcCCC
Q psy6125 61 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV--KKIN-VSTMAFKCMENINCFLDVAREMGVP 137 (242)
Q Consensus 61 ~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i--~ki~-~~~~~f~~~ENI~~FL~ac~~lGv~ 137 (242)
.+.|+..||++.+..++. . .+.|.+|.+.|++++.+.| .| .|++ .++..+....|...+-++-.++|++
T Consensus 11 sR~elL~WiN~~L~~n~~---k----iEel~tGaayCQl~d~l~g-~v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~ 82 (127)
T 2qjx_A 11 SRTELLTWLNGLLNLNYK---K----IEECGTGAAYCQIMDSIYG-DLPMNRVKFNATAEYEFQTNYKILQSCFSRHGIE 82 (127)
T ss_dssp CHHHHHHHHHHHHTCCCC---S----GGGGGGSHHHHHHHHHHHC-CSCGGGSCTTCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHcCCcc---H----HHHccchHHHHHHHhhhcc-ccCccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 468999999999999985 2 4567999999999999995 45 4565 5666788889999988888999998
Q ss_pred CcCccccchhhcccChhHHHHHHHHHHHhh
Q psy6125 138 AQETFQTVDLWERQNLNSVVICLQSLGRKA 167 (242)
Q Consensus 138 ~~~lF~t~DL~E~kn~~~Vv~cL~aL~~~a 167 (242)
. .+....|.-++ +.-=+.=|..+.+.-
T Consensus 83 k--~ipV~kLvKgr-fQDNlEFlQWfkkf~ 109 (127)
T 2qjx_A 83 K--TVYVDKLIRCK-FQDNLEFLQWLKKHW 109 (127)
T ss_dssp C--CCCHHHHTTTC-HHHHHHHHHHHHHHH
T ss_pred C--ccCHHHHhccC-chhHHHHHHHHHHHH
Confidence 5 35666666665 343444455555543
No 61
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.00045 Score=54.33 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=38.6
Q ss_pred cchhccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhh
Q psy6125 2 SDRINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCK 50 (242)
Q Consensus 2 ~~K~~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~ 50 (242)
+.|.+.+|+.+.+..+..||...+++... .....++.+.|+||++||+
T Consensus 8 ~~~~~~~~~~~q~~~f~~WIN~~L~~~~~-~~~v~dl~~dL~DGv~L~~ 55 (129)
T 2yrn_A 8 KRKPVIHGLEDQKRIYTDWANHYLAKSGH-KRLIRDLQQDVTDGVLLAQ 55 (129)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHHTCC-CSCCSCHHHHSSSSHHHHH
T ss_pred hhcccchhhHHHHHHHHHHHHHHhcccCC-CccchhHHHHcccHHHHHH
Confidence 45678899999999999999999986521 1123479999999999995
No 62
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.85 E-value=0.0026 Score=52.15 Aligned_cols=101 Identities=12% Similarity=0.231 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHHHHHHHHHHHHHHhCCCCCC-CCChhhH
Q psy6125 8 KYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIREITGENIDT-SGNMDNF 86 (242)
Q Consensus 8 K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~-~~~~~~f 86 (242)
.-+++.+.|++.||.++++.++.. .+.|++|.++|+ +++..+ |.. +--.++.. .....++
T Consensus 18 ~~~~~sr~ElL~WIN~~L~~~~~k-------iE~L~~GaayCQ-Lmd~L~-Pgs----------V~l~KVkf~a~~e~e~ 78 (159)
T 1wyo_A 18 TSENLSRHDMLAWVNDSLHLNYTK-------IEQLCSGAAYCQ-FMDMLF-PGC----------VHLRKVKFQAKLEHEY 78 (159)
T ss_dssp CCCCCCHHHHHHHHHHHSCCCCSS-------GGGGGGCHHHHH-HHHHHS-TTS----------SCTTSCCTTCCSSHHH
T ss_pred CCCchhHHHHHHHHHHHHCCCCch-------hhhcCccHHHHH-HHHHHc-cCC----------CcHhhhccCCCChHHH
Confidence 456777899999999999999864 267999999995 554433 321 11011221 1223455
Q ss_pred HHHhhhcHHHHHHHHhhc-CCCcccccc-CCccchhhhhHHHHHHHHHHc
Q psy6125 87 YEILKDGTLLCKLVNDLK-PNSVKKINV-STMAFKCMENINCFLDVAREM 134 (242)
Q Consensus 87 ~~~LrDGvvLCkL~N~l~-Pg~i~ki~~-~~~~f~~~ENI~~FL~ac~~l 134 (242)
.+.++ +|=+..+++. |..|+ |.. .+..| .+|+ .||+|.++|
T Consensus 79 ~~N~k---~lQ~af~k~gV~k~ip-V~kLvkgk~--qdNl-EFlqWfk~f 121 (159)
T 1wyo_A 79 IHNFK---VLQAAFKKMGVDKIIP-VEKLVKGKF--QDNF-EFIQWFKKF 121 (159)
T ss_dssp HHHHH---HHHHHHHHHTCCCCCC-HHHHTTTCS--HHHH-HHHHHHHHH
T ss_pred HHHHH---HHHHHHHHcCCCCccC-HHHHhcCCc--hhHH-HHHHHHHHH
Confidence 55555 5556666653 22221 111 12223 4665 588888764
No 63
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=95.58 E-value=0.0077 Score=47.32 Aligned_cols=35 Identities=26% Similarity=0.522 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccc
Q psy6125 15 QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKY 57 (242)
Q Consensus 15 ~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Ky 57 (242)
.|+++||.++++.++.. .+.|++|.++|+ +++..+
T Consensus 8 ~ElL~WIN~~L~~~~~k-------iE~L~~Ga~yCq-lmd~l~ 42 (123)
T 2qjz_A 8 HDMLAWINESLQLNLTK-------IEQLCSGAAYCQ-FMDMLF 42 (123)
T ss_dssp HHHHHHHHHHHTCCCCC-------GGGGGGSHHHHH-HHHHHS
T ss_pred HHHHHHHHHHHCCCCch-------HHHcCchHHHHH-HHHHHc
Confidence 68999999999999864 267999999995 554443
No 64
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=94.44 E-value=0.016 Score=55.80 Aligned_cols=61 Identities=18% Similarity=0.354 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhhcCCCC-----CCCCchhHHHHhhcchhhhhhhhccccc----------------HHHHHHHHHHH
Q psy6125 11 EELAQECLEWIREITGENID-----TSGNMDNFYEILKDGTLLCKTTINSKYS----------------EELAQECLEWI 69 (242)
Q Consensus 11 ~~~~~e~~~WI~~~~g~~i~-----~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd----------------~e~~~e~~~WI 69 (242)
.|+-+|+.+|+++....+.. ++...++|.+.|+||++||+ ++|..+. -...+.+..||
T Consensus 4 ~~~w~~~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~-l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl 82 (587)
T 3ky9_A 4 KELWRQCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQ-LLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFL 82 (587)
T ss_dssp -CHHHHHHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHH-HHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHH-HHHHhCCCCCCccccCCCccccchHHHHHHHHHH
Confidence 35668999999997664432 23345789999999999995 5543211 12345577777
Q ss_pred HHH
Q psy6125 70 REI 72 (242)
Q Consensus 70 ~~v 72 (242)
..+
T Consensus 83 ~~~ 85 (587)
T 3ky9_A 83 STC 85 (587)
T ss_dssp HHH
T ss_pred HHH
Confidence 777
No 65
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.39 E-value=0.11 Score=40.88 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=66.7
Q ss_pred ccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCcc--ccccCCccchhhhhHHHHH-HHH
Q psy6125 55 SKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVK--KINVSTMAFKCMENINCFL-DVA 131 (242)
Q Consensus 55 ~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i~--ki~~~~~~f~~~ENI~~FL-~ac 131 (242)
...+++..+++.+||.++ ..+. ...++...+.||+++.+++..+.|..|. .+......-..+.|=..|- +..
T Consensus 10 ~~l~~ee~~el~~WL~~l-~Ls~----~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl 84 (127)
T 2ee7_A 10 SSVDEEALHQLYLWVDNI-PLSR----PKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVL 84 (127)
T ss_dssp SSCCHHHHHHHHHHHHHS-CCSC----CSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHcC-CCCC----CCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHH
Confidence 346778889999999942 3333 2467899999999999999999998763 2223333445688999995 778
Q ss_pred HHcCCCCcCccccchhh---cc--cChhHHHHHH
Q psy6125 132 REMGVPAQETFQTVDLW---ER--QNLNSVVICL 160 (242)
Q Consensus 132 ~~lGv~~~~lF~t~DL~---E~--kn~~~Vv~cL 160 (242)
+++|++ +...|+- .+ .-+..|+.+|
T Consensus 85 ~kl~~~----l~~~~i~~i~~~~~Gaie~lL~~L 114 (127)
T 2ee7_A 85 KRLNFS----VPDDVMRKIAQCAPGVVELVLIPL 114 (127)
T ss_dssp GGGTCC----CCHHHHHHHHTTCTTTTHHHHHHH
T ss_pred HHcCCC----CCHHHHHHHHhCCCCHHHHHHHHH
Confidence 889885 4444332 22 2345666666
No 66
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=72.49 E-value=5.6 Score=32.14 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcHHHHHHHHhhcCCCc-----cccccC-C-ccchhhhhHHHHHHHH
Q psy6125 59 EELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV-----KKINVS-T-MAFKCMENINCFLDVA 131 (242)
Q Consensus 59 ~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGvvLCkL~N~l~Pg~i-----~ki~~~-~-~~f~~~ENI~~FL~ac 131 (242)
.+....+.+|++..- ..-+ .. =.+.|.||++|.++++.|.|... .+++.. . .--..+.|+...++..
T Consensus 8 ~~~~~aLl~W~~tf~-~~~~----~~-~~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i 81 (164)
T 1wix_A 8 LPLCDSLIIWLQTFK-TASP----CQ-DVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGI 81 (164)
T ss_dssp CHHHHHHHHHHTTCC-CSSC----CC-SHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcC-CCCC----cC-cHHHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHH
Confidence 467788999997653 2211 12 25789999999999999999763 355422 1 1223567887777777
Q ss_pred HH
Q psy6125 132 RE 133 (242)
Q Consensus 132 ~~ 133 (242)
..
T Consensus 82 ~~ 83 (164)
T 1wix_A 82 TS 83 (164)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 67
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=64.50 E-value=2.1 Score=33.26 Aligned_cols=44 Identities=25% Similarity=0.491 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 13 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 13 ~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
.++.++.|+...+.. .+ +....+|....+||.++|. |...|.|+
T Consensus 8 ~k~~LL~W~q~~~~~-y~-~v~V~nFs~sw~DG~af~a--Lih~~~P~ 51 (128)
T 2d87_A 8 IKQMLLDWCRAKTRG-YE-HVDIQNFSSSWSDGMAFCA--LVHNFFPE 51 (128)
T ss_dssp HHHHHHHHHHHHSSS-CT-TCCCSCTTTTTTSSHHHHH--HHHHHCTT
T ss_pred HHHHHHHHHHHHhcc-CC-CCCCCCccccccccHHHHH--HHHHHCcC
Confidence 356799999999874 21 2344689999999999996 44446665
No 68
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.66 E-value=2.8 Score=32.02 Aligned_cols=43 Identities=23% Similarity=0.504 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 14 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 14 ~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
++.++.|+...+.. . .+....+|....+||.++|. |...|.|+
T Consensus 11 ~~~LL~W~~~~~~~-y-~~v~v~nFs~sw~dG~af~a--Li~~~~P~ 53 (119)
T 2d89_A 11 SQSLLVWCKEVTKN-Y-RGVKITNFTTSWRNGLSFCA--ILHHFRPD 53 (119)
T ss_dssp HHHHHHHHHHHTTT-C-SSCCCCCSSHHHHTTHHHHH--HHHHHCTT
T ss_pred HHHHHHHHHHHhcc-C-CCCCCCCccccccccHHHHH--HHHHHCcC
Confidence 56799999999963 2 12344589999999999996 44445555
No 69
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=63.61 E-value=2.9 Score=31.87 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 12 ELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 12 ~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
..++.++.|+...+.. .+ +....+|....+||.++|. |...|.|+
T Consensus 8 ~~~~~LL~W~q~~~~~-y~-~v~v~nFs~sw~DG~af~a--Lih~~~P~ 52 (118)
T 1bhd_A 8 NSEKILLSWVRQTTRP-YS-QVNVLNFTTSWTDGLAFNA--VLHRHKPD 52 (118)
T ss_dssp HHHHHHHHHHHHHHTT-ST-TCCCCSSSGGGTTSHHHHH--HHHHHCGG
T ss_pred CHHHHHHHHHHHHhcc-CC-CCCCCCCcccccCcHHHHH--HHHHHCcC
Confidence 3456799999999862 11 1334589999999999996 44445554
No 70
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=63.29 E-value=2.9 Score=31.42 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 13 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 13 ~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
.++.++.|+...+.. .+ +....+|....+||.++|. +...|.|+
T Consensus 4 ~k~~LL~W~q~~~~~-y~-~v~v~nFs~sw~dG~af~a--Lih~~~P~ 47 (109)
T 1bkr_A 4 AKDALLLWCQMKTAG-YP-NVNIHNFTTSWRDGMAFNA--LIHKHRPD 47 (109)
T ss_dssp HHHHHHHHHHHHTTT-CT-TCCCSSSSGGGTTSHHHHH--HHHHHCGG
T ss_pred HHHHHHHHHHHHHcc-CC-CCCCCCCcccccccHHHHH--HHHHHCcC
Confidence 356799999998863 21 2344689999999999996 44446665
No 71
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=57.17 E-value=2.6 Score=32.02 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 13 LAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 13 ~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
.++.++.|+...+.. .+ +....+|....+||.++|. +| ..|.|+
T Consensus 8 ~~~~LL~W~q~~~~~-y~-~v~v~nFs~sw~dG~af~a-Li-h~~~P~ 51 (116)
T 1wyl_A 8 TQEELLRWCQEQTAG-YP-GVHVSDLSSSWADGLALCA-LV-YRLQPG 51 (116)
T ss_dssp SHHHHHHHHHHHHHH-ST-TCCCSCTTTTTTSSHHHHH-HH-HHHCTT
T ss_pred HHHHHHHHHHHHhcc-CC-CCCCCCccccccccHHHHH-HH-HHHCcC
Confidence 356799999999852 11 1234589999999999996 43 334443
No 72
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=53.28 E-value=2.8 Score=32.13 Aligned_cols=43 Identities=23% Similarity=0.433 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 14 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 14 ~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
++.++.|+...+.. . .+....+|....+||.++|. |...|.|+
T Consensus 11 ~~~LL~W~q~~~~~-y-~~v~v~nFs~sw~DG~af~a--Lih~~~P~ 53 (121)
T 2d88_A 11 SSKLLGWCQRQTDG-Y-AGVNVTDLTMSWKSGLALCA--IIHRYRPD 53 (121)
T ss_dssp SCHHHHHHHHHSTT-S-SSCCCCCSSHHHHTSHHHHH--HHHHHCTT
T ss_pred HHHHHHHHHHHhcc-C-CCCCCCCchhhccccHHHHH--HHHHhCcC
Confidence 34689999999963 1 12334589999999999996 44445554
No 73
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=45.39 E-value=4.2 Score=31.43 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 14 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 14 ~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
++.++.|+...+.. .+ +....+|....+||.++|. |...|.|+
T Consensus 9 k~~LL~W~q~~~~~-y~-~v~V~nFs~sw~DG~Af~a--Lih~~~P~ 51 (127)
T 1wyq_A 9 KDALLLWCQMKTAG-YP-NVNVHNFTTSWRDGLAFNA--IVHKHRPD 51 (127)
T ss_dssp THHHHHHHHHHHHT-SS-SCCCSCSSTTSSSSHHHHH--HHHHHCTT
T ss_pred HHHHHHHHHHHHhc-CC-CCCCCCCcccccccHHHHH--HHHHHCcC
Confidence 45689999998852 21 2334589999999999996 44556665
No 74
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=36.81 E-value=23 Score=28.23 Aligned_cols=96 Identities=19% Similarity=0.280 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhc
Q psy6125 14 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDG 93 (242)
Q Consensus 14 ~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDG 93 (242)
-.|++.||-..+..++.- .+-|.+|.+.|+ .+...| .. ..+-..++.. ....++...+
T Consensus 8 R~eLL~WiN~~L~~n~tk-------IE~l~sGAaYCQ-lmD~lf-g~---------i~l~kVkf~a-~~e~e~i~Nf--- 65 (145)
T 4abo_I 8 RQELLAWINQVTSLGLTR-------IEDCGKGYAMIQ-IFDSIY-QD---------IPLKKVNFEC-NNEYQYINNW--- 65 (145)
T ss_dssp HHHHHHHHHHHHTCCCCS-------GGGGGGSHHHHH-HHHHHH-CC---------SCTTTSCSSC-CSHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCCcch-------HHHccccHHHHH-HHHHHh-cC---------cchhhcccCC-CCHHHHHHHH---
Confidence 358999999999988853 556899999995 444433 10 0000112211 1223444444
Q ss_pred HHHHHHHHhhcCCCcccccc-CCccchhhhhHHHHHHHHHHc
Q psy6125 94 TLLCKLVNDLKPNSVKKINV-STMAFKCMENINCFLDVAREM 134 (242)
Q Consensus 94 vvLCkL~N~l~Pg~i~ki~~-~~~~f~~~ENI~~FL~ac~~l 134 (242)
-+|-...+++.-.-...|.. .+..| .+|+ .||+|.+++
T Consensus 66 KlLQ~~F~k~~I~k~ipV~kLvKgk~--QDNl-EFlQWfkkf 104 (145)
T 4abo_I 66 KVLQQVFLKKGIDKVVDPERLSRCKM--QDNL-EFVQWAKRF 104 (145)
T ss_dssp HHHHHHHHHHTCCCCCCHHHHTTTCH--HHHH-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHhccch--HhHH-HHHHHHHHH
Confidence 48888888774221111111 12223 4564 477777653
No 75
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=30.79 E-value=40 Score=26.09 Aligned_cols=95 Identities=17% Similarity=0.300 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcH
Q psy6125 15 QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGT 94 (242)
Q Consensus 15 ~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGv 94 (242)
.|++.||-..+..++.- .+-|.+|.+.|+ .+...| +. | .+-..++. +..=.+.+++-.
T Consensus 13 ~elL~WiN~~L~~n~~k-------iEel~tGaayCQ-l~d~l~-g~--------v-~l~kVkf~----a~~e~e~~~N~k 70 (127)
T 2qjx_A 13 TELLTWLNGLLNLNYKK-------IEECGTGAAYCQ-IMDSIY-GD--------L-PMNRVKFN----ATAEYEFQTNYK 70 (127)
T ss_dssp HHHHHHHHHHHTCCCCS-------GGGGGGSHHHHH-HHHHHH-CC--------S-CGGGSCTT----CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccH-------HHHccchHHHHH-HHhhhc-cc--------c-CccccCCC----CCCHHHHHHHHH
Confidence 58999999999988753 455789999995 444433 10 0 00111221 222356677777
Q ss_pred HHHHHHHhhcCCCcccccc-CCccchhhhhHHHHHHHHHHc
Q psy6125 95 LLCKLVNDLKPNSVKKINV-STMAFKCMENINCFLDVAREM 134 (242)
Q Consensus 95 vLCkL~N~l~Pg~i~ki~~-~~~~f~~~ENI~~FL~ac~~l 134 (242)
+|=...+++.-.....|.. .+..| .+|. .||+|.+++
T Consensus 71 ~LQ~~f~k~~I~k~ipV~kLvKgrf--QDNl-EFlQWfkkf 108 (127)
T 2qjx_A 71 ILQSCFSRHGIEKTVYVDKLIRCKF--QDNL-EFLQWLKKH 108 (127)
T ss_dssp HHHHHHHHTTCCCCCCHHHHTTTCH--HHHH-HHHHHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHhccCc--hhHH-HHHHHHHHH
Confidence 8888888875332212221 12233 4565 477777653
No 76
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=30.59 E-value=26 Score=30.44 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.0
Q ss_pred chhhhhHHHHHHHHHHcCCCCcC
Q psy6125 118 FKCMENINCFLDVAREMGVPAQE 140 (242)
Q Consensus 118 f~~~ENI~~FL~ac~~lGv~~~~ 140 (242)
-.|.|.+..|+.+|+.+||...|
T Consensus 248 ~~Q~~~L~~Fy~~ck~~gi~~~~ 270 (271)
T 3zyl_A 248 LTRMTRISEFLKVAEQVGIDRGD 270 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHcCcCcCC
Confidence 35789999999999999997655
No 77
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=29.99 E-value=30 Score=26.57 Aligned_cols=32 Identities=13% Similarity=0.343 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhcC-CCCCCCCchhHHHHhhcchhhhh
Q psy6125 15 QECLEWIREITGE-NIDTSGNMDNFYEILKDGTLLCK 50 (242)
Q Consensus 15 ~e~~~WI~~~~g~-~i~~~~~~~~~~~~Lk~g~~Lc~ 50 (242)
.-...||-..+.. ++. ..++...|+||++||+
T Consensus 25 ktft~WiN~~L~~~~~~----v~dL~~Dl~DGv~L~~ 57 (131)
T 2vzc_A 25 KTLITFVNKHLNKLNLE----VTELETQFADGVYLVL 57 (131)
T ss_dssp HHHHHHHHHHHGGGTCC----CCCTTTTTTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCc----ccCHHHHcccHHHHHH
Confidence 3488999998763 232 2478899999999995
No 78
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.66 E-value=44 Score=25.80 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=33.2
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHH
Q psy6125 6 NSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60 (242)
Q Consensus 6 ~~K~d~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e 60 (242)
...-+.+..+++..|+..+ ++.. ...++...+.||..+.. |-++|.|.
T Consensus 9 ~~~l~~ee~~el~~WL~~l---~Ls~--~~rn~rRDFSdG~lvAE--Il~~y~Pk 56 (127)
T 2ee7_A 9 ASSVDEEALHQLYLWVDNI---PLSR--PKRNLSRDFSDGVLVAE--VIKFYFPK 56 (127)
T ss_dssp CSSCCHHHHHHHHHHHHHS---CCSC--CSSCHHHHHTTSHHHHH--HHHHHCTT
T ss_pred CCCCCHHHHHHHHHHHHcC---CCCC--CCCchhhhccchhHHHH--HHHHHCcC
Confidence 3456788889999999842 3432 23467888999988874 66666654
No 79
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=26.04 E-value=37 Score=23.97 Aligned_cols=36 Identities=14% Similarity=0.378 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHh---CCCCCCCCChhhHHHHhhhcHHHHHHHH
Q psy6125 62 AQECLEWIREIT---GENIDTSGNMDNFYEILKDGTLLCKLVN 101 (242)
Q Consensus 62 ~~e~~~WI~~vl---g~~~~~~~~~~~f~~~LrDGvvLCkL~N 101 (242)
+++|++||.-+. +.+++ ..++...=.||..||.|-.
T Consensus 16 ~~~V~~WL~w~~~e~~l~l~----~~~~~~f~m~G~~Lc~ls~ 54 (82)
T 1sv0_C 16 RADVWKWLINMAVSEGLEVT----AELPQKFPMNGKALCLMSL 54 (82)
T ss_dssp HHHHHHHHHHHHHHHTCCCC----THHHHTCCSCHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhCCCCC----CCccccCCCCHHHHHhCCH
Confidence 467889997554 33332 3445544579999998755
No 80
>2kwz_A Protease NS2-3; NS2 domain, viral protein, membrane prote; NMR {Hepatitis c virus}
Probab=26.02 E-value=49 Score=20.57 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.4
Q ss_pred hcchhhhhhhhcccccHHHHHHHHHHHHHHhC
Q psy6125 43 KDGTLLCKTTINSKYSEELAQECLEWIREITG 74 (242)
Q Consensus 43 k~g~~Lc~~ki~~Kyd~e~~~e~~~WI~~vlg 74 (242)
+||++|+. ..+.|++.-++-+|+-.++|
T Consensus 2 RDaiIll~----~~~hP~L~FdITK~LlailG 29 (40)
T 2kwz_A 2 RDAVILLT----CAIHPELIFTITKILLAILG 29 (40)
T ss_dssp CSSHHHHH----HHSSHHHHHHHHHHHHHTSC
T ss_pred cceeeeHH----HHhCchHHHHHHHHHHHHHC
Confidence 57888874 45788999999999999987
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=24.04 E-value=1.6e+02 Score=21.27 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=43.4
Q ss_pred hccCCCHHHHHHHHHHHHHhhcCCCC--C----CCCchhHHHHhhcchhhh-------h-----hhhcccccHHHHHHHH
Q psy6125 5 INSKYSEELAQECLEWIREITGENID--T----SGNMDNFYEILKDGTLLC-------K-----TTINSKYSEELAQECL 66 (242)
Q Consensus 5 ~~~K~d~~~~~e~~~WI~~~~g~~i~--~----~~~~~~~~~~Lk~g~~Lc-------~-----~ki~~Kyd~e~~~e~~ 66 (242)
...+|+.+.-.++..+++.- |.... . +++......|+++-..+. . ........++.|+.+.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~-g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~~~~~~~~~~~~~kr~r~~~~~~~E~~L~ 82 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEEN-PDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGLLI 82 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHHTHHHHHHHHHHHGGGGGTCCCCCCCTTHHHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHC-CCCcHHHHHHHhCCCHHHHHHHHhchhhhcchhhhccccchhhcccCCCCCHHHHHHHH
Confidence 46789999999999988532 22211 0 344455667776532211 0 0111124577899999
Q ss_pred HHHHHHhCCCCC
Q psy6125 67 EWIREITGENID 78 (242)
Q Consensus 67 ~WI~~vlg~~~~ 78 (242)
.||..+....+|
T Consensus 83 ~Wi~~~~~~g~p 94 (131)
T 1hlv_A 83 AWFQQIRAAGLP 94 (131)
T ss_dssp HHHHHHGGGTCC
T ss_pred HHHHHHHHCCCC
Confidence 999998744443
No 82
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=23.93 E-value=53 Score=28.64 Aligned_cols=96 Identities=15% Similarity=0.250 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhhhcH
Q psy6125 15 QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGT 94 (242)
Q Consensus 15 ~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~LrDGv 94 (242)
.|++.||-..++.++.- .+-|.+|.+.|+ .+...|. ... .+-..++. ...=.+.++|=-
T Consensus 18 ~elL~WiN~~L~~~~~k-------iEel~tGaayCQ-lmd~l~P-~~i--------~l~kVkf~----a~~e~e~i~N~k 76 (268)
T 2r8u_A 18 HDMLAWINESLQLNLTK-------IEQLCSGAAYCQ-FMDMLFP-GSI--------ALKKVKFQ----AKLEHEYIQNFK 76 (268)
T ss_dssp HHHHHHHHHHHTCCCCC-------GGGGGGSHHHHH-HHHHHST-TSS--------CGGGCCTT----CCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcch-------HHHcccchHHHH-HHHHHcc-CCC--------chhhccCC----CCCHHHHHHHHH
Confidence 68999999999988853 556899999995 4444442 110 00011222 111234444444
Q ss_pred HHHHHHHhhcCCCcccccc-CCccchhhhhHHHHHHHHHHc
Q psy6125 95 LLCKLVNDLKPNSVKKINV-STMAFKCMENINCFLDVAREM 134 (242)
Q Consensus 95 vLCkL~N~l~Pg~i~ki~~-~~~~f~~~ENI~~FL~ac~~l 134 (242)
+|=...+++.-.-...|.. .+..| .+|+ .||+|+++|
T Consensus 77 ~LQ~~F~k~~I~k~ipV~kLvkgk~--qDNl-EFlqWfkkf 114 (268)
T 2r8u_A 77 ILQAGFKRMGVDKIIPVDKLVKGKF--QDNF-EFVQWFKKF 114 (268)
T ss_dssp HHHHHHHHTTCCCCCCHHHHTTTCH--HHHH-HHHHHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHhccCc--hhHH-HHHHHHHHH
Confidence 7777777765322111111 12223 4665 578888653
No 83
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=21.53 E-value=1.3e+02 Score=21.81 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCchhHHHHhhcchhhhhhhhcccccHHHHHHHHHHHHHHhCCC
Q psy6125 11 EELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIREITGEN 76 (242)
Q Consensus 11 ~~~~~e~~~WI~~~~g~~i~~~~~~~~~~~~Lk~g~~Lc~~ki~~Kyd~e~~~e~~~WI~~vlg~~ 76 (242)
++...-+..||+. ...+...|.+-|..+| | +.+ ...+-+....+.+|+..+....
T Consensus 12 ~dvr~~l~~Wv~~---~~~P~~~DV~~l~~yL------~-~lv-~~~~lek~~~vlk~l~rlv~~~ 66 (97)
T 4fjo_A 12 SDVKTLLKEWITT---ISDPMEEDILQVVRYC------T-DLI-EEKDLEKLDLVIKYMKRLMQQS 66 (97)
T ss_dssp HHHHHHHHHHHHH---CSSCCHHHHHHHHHHH------H-HHH-HTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc---CCCCCHHHHHHHHHHH------H-HHh-hccCHHHHHHHHHHHHHHHhcc
Confidence 4556678999985 2333333344455544 3 233 2345677788999998877543
No 84
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=20.23 E-value=1.4e+02 Score=22.37 Aligned_cols=35 Identities=11% Similarity=0.298 Sum_probs=30.4
Q ss_pred hcccccHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHhh
Q psy6125 53 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILK 91 (242)
Q Consensus 53 i~~Kyd~e~~~e~~~WI~~vlg~~~~~~~~~~~f~~~Lr 91 (242)
+.+..+++..+.+++-|.+++..++. +++|...|.
T Consensus 19 la~~~~pev~~~Vr~LVq~Ll~~~i~----~EeFt~~Lq 53 (105)
T 2h7b_A 19 FGNDISPEIGERVRTLVLGLVNSTLT----IEEFHSKLQ 53 (105)
T ss_dssp SHHHHCHHHHHHHHHHHHHHHTSSCC----HHHHHHHHH
T ss_pred HhccCChHHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Confidence 55677999999999999999999984 789988876
Done!