RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6125
(242 letters)
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 146
Score = 156 bits (396), Expect = 7e-49
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 22/157 (14%)
Query: 53 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKIN 112
+ SKY + E WI +TG +I +F + LKDGT+LC L+N L+P SV KIN
Sbjct: 10 LLSKYDPQKEAELRTWIEGLTGLSIG-----PDFQKGLKDGTILCTLMNKLQPGSVPKIN 64
Query: 113 VSTMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINSR 172
S + +EN++ F+ G+ + F+ DL+E N+ V + L +L KA
Sbjct: 65 RSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAK---- 120
Query: 173 NFNLKAISLLWELSGGNYGKPSIGPKEADKNVRHFTE 209
+ G IG K ++K R
Sbjct: 121 -------------TKGLQSGVDIGVKYSEKQERSGPS 144
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 152 bits (384), Expect = 3e-46
Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 26/168 (15%)
Query: 53 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKIN 112
+ + E +WI E G ++ G F + L++G +L LV +P+ + KI
Sbjct: 48 LQAYDYLCRVDEAKKWIEECLGTDL---GPTSTFEQSLRNGVVLALLVQKFQPDKLIKIF 104
Query: 113 V-STMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASINS 171
+ + F+ +NIN FLD +G+P F+ D++E +NL V+ C+ +L
Sbjct: 105 YSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFL---- 160
Query: 172 RNFNLKAISLLWELSGGNYGKPSIGPKEADKNVRHFTEEQLKAGQTVI 219
+ P FT+E + +
Sbjct: 161 ------------------SMQDLAPPLIKSDENLSFTDEDVSIIVRRL 190
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 159
Score = 150 bits (379), Expect = 5e-46
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 29/170 (17%)
Query: 53 INSKYSEELAQ--ECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKK 110
Y + L + E +WI E G ++ G F + L++G +L LV +P+ + K
Sbjct: 3 TLQAY-DYLCRVDEAKKWIEECLGTDL---GPTSTFEQSLRNGVVLALLVQKFQPDKLIK 58
Query: 111 INV-STMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASI 169
I + + F+ +NIN FLD +G+P F+ D++E +NL V+ C+ +L
Sbjct: 59 IFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFL-- 116
Query: 170 NSRNFNLKAISLLWELSGGNYGKPSIGPKEADKNVRHFTEEQLKAGQTVI 219
+ P FT+E + +
Sbjct: 117 --------------------SMQDLAPPLIKSDENLSFTDEDVSIIVRRL 146
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 147 bits (372), Expect = 4e-45
Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 18/155 (11%)
Query: 53 INSKYSEELAQECLEWIREITGENID-TSGNMDNFYEILKDGTLLCKLVNDLKPN---SV 108
I +Y +L Q ++WI +++ +NF LKDGT+LC+L+N L P V
Sbjct: 10 IEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPV 69
Query: 109 KKINVSTMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAS 168
KKI STMAFK ME I+ FL A G+ + FQTVDLWE +N+ V L +LG A
Sbjct: 70 KKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAV 129
Query: 169 INSRNFNLKAISLLWELSGGNYGKPSIGPKEADKN 203
G G P+ PK++ ++
Sbjct: 130 --------------ARDDGLFSGDPNWFPKKSKES 150
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 136
Score = 146 bits (369), Expect = 7e-45
Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 53 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKIN 112
+ KY + QE EWI +TG I +NF + LKDG +LC+ +N L+P SVKKIN
Sbjct: 10 LAQKYDHQREQELREWIEGVTGRRIG-----NNFMDGLKDGIILCEFINKLQPGSVKKIN 64
Query: 113 VSTMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167
ST + +ENI F+ + GV + F+ DL+E N V L +L A
Sbjct: 65 ESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMA 119
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Length = 144
Score = 145 bits (367), Expect = 2e-44
Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 19/152 (12%)
Query: 54 NSKYSEELAQECLEWIREITGENI-DTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKIN 112
+ EEL + +EWI G ++ F LK+G +L KLVN L P K +
Sbjct: 3 SGSSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVK 62
Query: 113 V----STMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAS 168
V +M FK ME + FL A + GV + FQTVDL+E +++ +V L +LG A
Sbjct: 63 VPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAV 122
Query: 169 INSRNFNLKAISLLWELSGGNYGKPSIGPKEA 200
+ G G P+ K
Sbjct: 123 --------------TKNDGNYRGDPNWFMKSG 140
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 142 bits (359), Expect = 1e-43
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 60 ELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFK 119
+ ++ WI TG I DNF + LKDG +LC+L+N L+P SV+K+N +
Sbjct: 3 QTERQLRVWIEGATGRRIG-----DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWH 57
Query: 120 CMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167
+ENI FL + GV + F+ DL+E N V L +L +A
Sbjct: 58 KLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQA 105
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 142 bits (359), Expect = 1e-42
Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 38/182 (20%)
Query: 50 KTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNS-- 107
+ + +Y L +E W+ GE++ + E L++G L KL N P
Sbjct: 38 RQNVAYEYLCHL-EEAKRWMEACLGEDLPPT---TELEEGLRNGVYLAKLGNFFSPKVVS 93
Query: 108 --------VKKINVSTMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVIC 159
+ + + F+ +N+ +L+ E+G+P +T D+++R+N+ + C
Sbjct: 94 LKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYC 153
Query: 160 LQSLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEADK-NVRHFTEEQLKAGQTV 218
+ +L K + P+ D FTEE++ +T
Sbjct: 154 IHALSLYLF-----------------------KLGLAPQIQDLYGKVDFTEEEINNMKTE 190
Query: 219 IS 220
+
Sbjct: 191 LE 192
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
sapiens}
Length = 190
Score = 141 bits (357), Expect = 2e-42
Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 38/180 (21%)
Query: 53 INSKYSEEL-AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNS---- 107
N Y +E W+ GE++ + E L++G L KL N P
Sbjct: 17 QNVAYEYLCHLEEAKRWMEACLGEDLPPT---TELEEGLRNGVYLAKLGNFFSPKVVSLK 73
Query: 108 ------VKKINVSTMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQ 161
+ + + F+ +N+ +L+ E+G+P +T D+++R+N+ + C+
Sbjct: 74 KIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIH 133
Query: 162 SLGRKASINSRNFNLKAISLLWELSGGNYGKPSIGPKEADK-NVRHFTEEQLKAGQTVIS 220
+L K + P+ D FTEE++ +T +
Sbjct: 134 ALSLYLF-----------------------KLGLAPQIQDLYGKVDFTEEEINNMKTELE 170
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Length = 121
Score = 127 bits (321), Expect = 7e-38
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 56 KYSEELAQECLEWIREITGENIDTSGNMD---NFYEILKDGTLLCKLVNDLKPNSVKKIN 112
++ + W+ + D LK+G +LCKL+N L P SV+K
Sbjct: 2 SSGSSGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFC 61
Query: 113 V-STMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167
+ C+ NIN FL + V F DL+ N + V+ L ++ +
Sbjct: 62 LDPQTEADCINNINDFLKGCATLQVE---IFDPDDLYSGVNFSKVLSTLLAVNKAT 114
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics,
northeast structural genomics consortiu PSI-biology,
calponin-homology domain; NMR {Homo sapiens}
Length = 126
Score = 113 bits (284), Expect = 3e-32
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 60 ELAQECLEWIREITGENIDTSGNMD---NFYEILKDGTLLCKLVNDLKPNSVKKINV-ST 115
A++ + W+ + D LKDG +LC+L+ L P +++K+
Sbjct: 12 NSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPR 71
Query: 116 MAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167
+C+ NI FL ETF DL++ QN N V+ L +L +
Sbjct: 72 SESECLSNIREFLRGCG--ASLRLETFDANDLYQGQNFNKVLSSLVTLNKVT 121
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 67.8 bits (165), Expect = 3e-13
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 59 EELAQECLEWIREITG-----ENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINV 113
+EL ++C W+ + + + L+DG LLC+L+N+L P+++ V
Sbjct: 4 KELWRQCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREV 63
Query: 114 S----TMAFKCMENINCFLDVARE-MGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAS 168
+ F C++NI FL E G+ E F+ DL++ Q+ V+ L +L
Sbjct: 64 NLRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQDFGKVIYTLSALSWTPI 123
Query: 169 INSRNFN 175
+R
Sbjct: 124 AQNRGIM 130
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 45.7 bits (108), Expect = 4e-06
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 82 NMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTM---AFKCMENINCFLDVAREMGVP 137
N D+ ++ + DG +LCK++N P+++ + ++ F EN+N L+ A +G
Sbjct: 52 NTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCH 110
Score = 33.0 bits (75), Expect = 0.058
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 52 TINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKI 111
T+ + L W + ++NF +KD L+N + P K+
Sbjct: 160 TLEELMKLSPEELLLRWANFHLENS--GWQKINNFSADIKDSKAYFHLLNQIAPKGQKEG 217
Query: 112 NVSTMAFKC-------MENINCFLDVAREMGVP 137
++ L A ++G
Sbjct: 218 EPRIDINMSGFNETDDLKRAESMLQQADKLGCR 250
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 44.0 bits (104), Expect = 4e-06
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 84 DNFYEILKDGTLLCKLVNDLKPNSVKKINVS-TMAFKCMENINCFLDVAREMGV 136
+ + + DG LL +++ + ++ IN + +ENI+ L+ G+
Sbjct: 41 RDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAKGI 94
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 45.5 bits (107), Expect = 7e-06
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 82 NMDNFYEILKDGTLLCKLVNDLKPNSVKKINVST----MAFKCMENINCFLDVAREMGV 136
+ + YE++KDG LLCKL+N P ++ + ++T ++ EN L+ A+ +G
Sbjct: 35 HSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGC 93
Score = 43.9 bits (103), Expect = 2e-05
Identities = 16/107 (14%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 35 MDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGT 94
+ + K +E++ E + ++ ++N +E +++G
Sbjct: 246 VAQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCYRLWINSLGIDSYVNNVFEDVRNGW 305
Query: 95 LLCKLVNDLKPNSVKKINVST----MAFKCMENINCFLDVAREMGVP 137
+L ++++ + P+SV + S M F+ +EN N + + +++
Sbjct: 306 ILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFS 352
Score = 33.9 bits (77), Expect = 0.042
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Query: 52 TINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKI 111
+ + L+W+ + + NF LKD L+N L P
Sbjct: 144 DVEELLRLPPEKVLLKWMNFHL-KKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPA 202
Query: 112 NVSTMAFKCMENINCFLDVAREMGVP 137
+ +E L A M
Sbjct: 203 TLDAK--DPLERAELVLSHAERMNCK 226
Score = 32.4 bits (73), Expect = 0.11
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 66 LEWIREITGENIDTSGNMDNF-YEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENI 124
L W + +++F + L G L+ ++P V V+ + +
Sbjct: 403 LSWANRKV-RTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRL 461
Query: 125 NC--FLDVAREMGVP 137
N + VAR++G
Sbjct: 462 NATYIVSVARKLGCS 476
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 44.3 bits (104), Expect = 1e-05
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 83 MDNFYEILKDGTLLCKLVNDLKPNSV--KKINVSTMAFKCMENINCFLDVAREMGV 136
+ N L DG L L+ L + K T +EN++ L+ +
Sbjct: 67 IANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESI 122
Score = 28.1 bits (62), Expect = 2.3
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 82 NMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAR-EMGVP 137
+ NF + G L LV+ P + A K + N + A +G+P
Sbjct: 187 PITNFSRDWQSGRALGALVDSCAPGLCPDWDSWD-ASKPVTNAREAMQQADDWLGIP 242
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 42.0 bits (98), Expect = 1e-04
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 50 KTTINSKYSEELAQECLEWI------REITGENIDTSGNMDNFYEILKDGTLLCKLVNDL 103
+EE +E ++ I G + + F++ KDG +L KL+ND
Sbjct: 2 SPEFMHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDS 61
Query: 104 KP--NSVKKINVS-----TMAFKCMENINCFLDVAREMG 135
P + +N FKC+EN N ++ A+ MG
Sbjct: 62 VPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 100
Score = 37.8 bits (87), Expect = 0.003
Identities = 13/120 (10%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 24 ITGENI---DTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIREITGENIDTS 80
I G +I + + +++++ +++ + + W + + S
Sbjct: 369 IQGADITDGSRTLTLALVWQMMRMNITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGS 428
Query: 81 GNMDNFY-EILKDGTLLCKLVNDLKPNSV--KKINVSTMAFKCMENINCFLDVAREMGVP 137
+ +F + G + +++ +K V + + ++N + +AR++G
Sbjct: 429 -QIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIARKLGAV 487
Score = 33.9 bits (77), Expect = 0.035
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 66 LEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENIN 125
L W + + + NF + + DG L+N L P + + T ++
Sbjct: 167 LRWFNYHL-KAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTT--DVLQRAE 223
Query: 126 CFLDVAREMGVP 137
L A ++
Sbjct: 224 QVLQNAEKLDCR 235
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 40.3 bits (94), Expect = 2e-04
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 83 MDNFYEILKDGTLLCKLVNDLKPNSV--KKINVSTMAFKCMENINCFLDVAREMGV 136
+ N L DG L L+ L + K T +EN++ L+ +
Sbjct: 40 IGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESI 95
Score = 30.3 bits (68), Expect = 0.47
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 49 CKTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV 108
+ + Q L WI+ + NF + +DG L LV+ P
Sbjct: 132 EDEGDDDAKKQTPKQRLLGWIQNKIPY-----LPITNFNQNWQDGKALGALVDSCAPGLC 186
Query: 109 KKINVSTMAFKCMENINCFLDVA-REMGVP 137
S K ++N + A +GVP
Sbjct: 187 PDWE-SWDPQKPVDNAREAVQQADDWLGVP 215
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 38.0 bits (88), Expect = 0.001
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 83 MDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAREMGVP 137
++N E ++G L L+ + + + + M F + N+N LD GV
Sbjct: 47 IENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGVK 101
Score = 34.5 bits (79), Expect = 0.020
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 49 CKTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSV 108
S + L W + T + N+ NF+ KDG LC L++ +P+ +
Sbjct: 129 FAIQDISVEETSAKEGLLLWCQRKTAPYRNV--NVQNFHTSWKDGLALCALIHRHRPDLI 186
Query: 109 KKINVSTMAFKCMENINCFLDVA-REMGVP 137
+ + N+N +VA + + +P
Sbjct: 187 DYAKLRKD--DPIGNLNTAFEVAEKYLDIP 214
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 37.4 bits (86), Expect = 0.002
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 83 MDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAREMGVP 137
+ + YE L+DG L L+ L +S+ + M F ++N+ LD R V
Sbjct: 93 ISDLYEDLRDGHNLISLLEVLSGDSLPREK-GRMRFHKLQNVQIALDYLRHRQVK 146
Score = 30.9 bits (69), Expect = 0.30
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 62 AQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCM 121
++ L W + + DNF +DG L +++ KP + V +
Sbjct: 191 KEKLLLWSQRMVEGYQGL--RCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQ--TNL 246
Query: 122 ENINCFLDVA-REMGVP 137
EN++ VA R++GV
Sbjct: 247 ENLDQAFSVAERDLGVT 263
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 36.9 bits (85), Expect = 0.004
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 83 MDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAREMGVP 137
++N + L+DG L L+ L + K + + N+N L V + V
Sbjct: 37 IENLFSDLQDGRRLLDLLEGLTGQKLPKEK-GSTRVHALNNVNKALRVLQNNNVD 90
Score = 31.9 bits (72), Expect = 0.16
Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 8/101 (7%)
Query: 38 FYEILKDGTLLCKTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLC 97
+++ + + + L L W+R+ T N+ NF DG L
Sbjct: 117 HWQVKNVMKNIMAGLQQTNSEKIL----LSWVRQSTRNYPQV--NVINFTTSWSDGLALN 170
Query: 98 KLVNDLKPNSVKKINVSTMAFKCMENINCFLDVA-REMGVP 137
L++ +P+ N + + ++A ++G+
Sbjct: 171 ALIHSHRPDLF-DWNSVVSQQSATQRLEHAFNIARYQLGIE 210
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.007
Identities = 50/300 (16%), Positives = 89/300 (29%), Gaps = 125/300 (41%)
Query: 6 NSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSK--YSEELAQ 63
Y EEL ++ + + G+ I S E L + L +TT++++ +++ L
Sbjct: 166 TDDYFEEL-RDLYQTYHVLVGDLIKFSA------ETLSE---LIRTTLDAEKVFTQGL-- 213
Query: 64 ECLEWIREITGENIDTSGNMDNF-----------------YEILKDGTLLCKLVNDLKPN 106
LEW+ EN + + D Y + K + P
Sbjct: 214 NILEWL-----ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT------AK-LLGFTPG 261
Query: 107 SVKKINVSTMAFKCMENI------------NCFLDVAREM-------GVPAQETFQTVDL 147
++ + + F R+ GV E + L
Sbjct: 262 ELRSYLKGATG--HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 148 WERQNLNSVV---------ICLQSLGRK---ASINSRNFNLKA-----ISLLWELSGGNY 190
+S+ + + +L ++ +N N +L A ISL+ N
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV------N- 372
Query: 191 GKPSIGPKEADKNVRHFTEEQLKAGQTVI-----SLQYGSNK---------GANQSGINF 236
G ++ V+ SL YG N G +QS I F
Sbjct: 373 -----GA-------KNL----------VVSGPPQSL-YGLNLTLRKAKAPSGLDQSRIPF 409
Score = 36.2 bits (83), Expect = 0.010
Identities = 14/95 (14%), Positives = 37/95 (38%), Gaps = 28/95 (29%)
Query: 52 TINSKYSEELAQECLEWIREITGE-------NID-----TSGNMDNFYEILKDGTLLCKL 99
+ + +S+E Q +E + + TG N++ +G++ L +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA----------LDTV 1865
Query: 100 VNDLKPNSVKKINVSTMAFKCMENINCFLDVAREM 134
N L ++KI++ + ++++ L+
Sbjct: 1866 TNVLNFIKLQKIDII----ELQKSLS--LEEVEGH 1894
Score = 29.6 bits (66), Expect = 1.1
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 15/56 (26%)
Query: 3 DRINSKYSEELAQECLEWIREITGE-------NID-----TSGNM---DNFYEILK 43
R+ + +S+E Q +E + + TG N++ +G++ D +L
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 35.3 bits (81), Expect = 0.009
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 68 WIRE--ITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENIN 125
W+ + I + ++ + YE L+DG L L+ L +S+ + M F ++N+
Sbjct: 20 WVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREK-GRMRFHKLQNVQ 78
Query: 126 CFLDVAREMGVP 137
LD R V
Sbjct: 79 IALDYLRHRQVK 90
Score = 32.7 bits (74), Expect = 0.068
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 63 QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCME 122
++ L W + + DNF +DG L +++ KP + V +E
Sbjct: 136 EKLLLWSQRMVEGYQGL--RCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQ--TNLE 191
Query: 123 NINCFLDVA-REMGVP 137
N++ VA R++GV
Sbjct: 192 NLDQAFSVAERDLGVT 207
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 36.0 bits (82), Expect = 0.010
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 83 MDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAREMGVP 137
++N E +DG L L+ + + K M + N+N LD GV
Sbjct: 28 IENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVK 82
Score = 29.1 bits (64), Expect = 1.7
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 63 QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCME 122
+ L W + T + N+ NF+ KDG C L++ +P + + +
Sbjct: 124 EGLLLWYQRKTAPYKNV--NIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKD--DPLT 179
Query: 123 NIN-CFLDVAREMGVPA 138
N+N F + + +P
Sbjct: 180 NLNTAFDVAEKYLDIPK 196
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 33.3 bits (76), Expect = 0.024
Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 83 MDNFYEILKDGTLLCKLVNDLKPNSVKKINVS---TMAFKCMENINCFLDVAREMGVP 137
+ DG L L+ L+ V + + + N++ ++ ++ G+
Sbjct: 42 VTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLE 99
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A
{Serratia fonticola} PDB: 3sd9_A
Length = 233
Score = 32.8 bits (75), Expect = 0.063
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 43 KDGTLLCKTTINSKYSEELAQECLEWIREITGENI 77
DG + I + ++ E A+ + IR+++ I
Sbjct: 34 TDGITI----IGATWTPETAETLYKEIRKVSPLPI 64
Score = 30.9 bits (70), Expect = 0.31
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 5 INSKYSEELAQECLEWIREITGENI 29
I + ++ E A+ + IR+++ I
Sbjct: 40 IGATWTPETAETLYKEIRKVSPLPI 64
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET:
CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB:
1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A
2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A
2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Length = 227
Score = 32.4 bits (74), Expect = 0.093
Identities = 6/35 (17%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 43 KDGTLLCKTTINSKYSEELAQECLEWIREITGENI 77
G +L ++S + ++L +E +E + + + +
Sbjct: 49 SKGLVL----VDSSWDDKLTKELIEMVEKKFQKRV 79
Score = 30.5 bits (69), Expect = 0.39
Identities = 4/25 (16%), Positives = 15/25 (60%)
Query: 5 INSKYSEELAQECLEWIREITGENI 29
++S + ++L +E +E + + + +
Sbjct: 55 VDSSWDDKLTKELIEMVEKKFQKRV 79
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding;
HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A
3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A
Length = 227
Score = 32.4 bits (74), Expect = 0.093
Identities = 4/37 (10%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 43 KDGTLLCKTTINSKYSEELAQECLEWIREITGENIDT 79
G + + + ++ + A+E + I+ ++ + +
Sbjct: 31 AKGVTV----VGATWTPDTARELHKLIKRVSRKPVLE 63
Score = 30.0 bits (68), Expect = 0.46
Identities = 3/27 (11%), Positives = 15/27 (55%)
Query: 5 INSKYSEELAQECLEWIREITGENIDT 31
+ + ++ + A+E + I+ ++ + +
Sbjct: 37 VGATWTPDTARELHKLIKRVSRKPVLE 63
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic
recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A
2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Length = 265
Score = 32.1 bits (73), Expect = 0.12
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 43 KDGTLLCKTTINSKYSEELAQECLEWIREITGENIDT 79
D LL I++ + + L I + G +
Sbjct: 76 ADELLL----IDTAWGAKNTVALLAEIEKQIGLPVTR 108
Score = 29.8 bits (67), Expect = 0.70
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 5 INSKYSEELAQECLEWIREITGENIDT 31
I++ + + L I + G +
Sbjct: 82 IDTAWGAKNTVALLAEIEKQIGLPVTR 108
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
hydrolase; HET: MCO; 1.50A {Elizabethkingia
meningoseptica} SCOP: d.157.1.1
Length = 223
Score = 31.7 bits (72), Expect = 0.14
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 24 ITGEN-IDTSGNMDNFYEIL-KDGTLLCKTTINSKYSEELAQECLEWIREITGENI 77
T N + + N ++ G ++ I+ + E+ + + I + G+ +
Sbjct: 14 YTTYNTFNGTKYAANAVYLVTDKGVVV----IDCPWGEDKFKSFTDEIYKKHGKKV 65
Score = 29.4 bits (66), Expect = 0.87
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 5 INSKYSEELAQECLEWIREITGENI 29
I+ + E+ + + I + G+ +
Sbjct: 41 IDCPWGEDKFKSFTDEIYKKHGKKV 65
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
hydrolase; 1.65A {Chryseobacterium indologenes}
Length = 219
Score = 30.9 bits (70), Expect = 0.24
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 43 KDGTLLCKTTINSKYSEELAQECLEWIREITGENI 77
K G +L + + + Q ++ I++ +
Sbjct: 39 KKGVVL----FDVPWEKVQYQSLMDTIKKRHNLPV 69
Score = 29.0 bits (65), Expect = 1.1
Identities = 2/25 (8%), Positives = 10/25 (40%)
Query: 5 INSKYSEELAQECLEWIREITGENI 29
+ + + Q ++ I++ +
Sbjct: 45 FDVPWEKVQYQSLMDTIKKRHNLPV 69
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET:
MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 30.9 bits (70), Expect = 0.27
Identities = 5/61 (8%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 20 WIREITGENIDTSGNMDNFYEIL-KDGTLLCKTTINSKYSEELAQECLEWIREITGENID 78
+ E N ++ L +++ ++ + + W+ + +
Sbjct: 21 YTYVSLAEIEGWGMVPSNGMIVINNHQAAL----LDTPINDAQTEMLVNWVTDSLHAKVT 76
Query: 79 T 79
T
Sbjct: 77 T 77
Score = 29.0 bits (65), Expect = 1.2
Identities = 2/27 (7%), Positives = 12/27 (44%)
Query: 5 INSKYSEELAQECLEWIREITGENIDT 31
+++ ++ + + W+ + + T
Sbjct: 51 LDTPINDAQTEMLVNWVTDSLHAKVTT 77
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic,
hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella
pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A*
3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A
3zr9_A 3s0z_A 3pg4_A
Length = 270
Score = 29.6 bits (66), Expect = 0.93
Identities = 4/35 (11%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 43 KDGTLLCKTTINSKYSEELAQECLEWIREITGENI 77
L+ +++ ++++ + L WI++ +
Sbjct: 83 GGRVLV----VDTAWTDDQTAQILNWIKQEINLPV 113
Score = 28.0 bits (62), Expect = 2.4
Identities = 3/25 (12%), Positives = 14/25 (56%)
Query: 5 INSKYSEELAQECLEWIREITGENI 29
+++ ++++ + L WI++ +
Sbjct: 89 VDTAWTDDQTAQILNWIKQEINLPV 113
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein
structure initiative; 2.20A {Burkholderia pseudomallei}
Length = 285
Score = 28.1 bits (63), Expect = 2.3
Identities = 9/56 (16%), Positives = 17/56 (30%)
Query: 5 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEE 60
+++ E A+ L ++R +D D L G L +
Sbjct: 89 YGAQHDEADARRALAFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLG 144
Score = 26.2 bits (58), Expect = 9.6
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 53 INSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTL 95
+++ E A+ L ++R +D D L G L
Sbjct: 89 YGAQHDEADARRALAFVRADETLTVDVKPAADAMLAALAAGGL 131
>1xg0_C B-phycoerythrin beta chain; light-harvesting protein, cryptophyte,
photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP}
SCOP: a.1.1.3 PDB: 1qgw_C* 1xf6_C* 1lia_B* 1eyx_B*
2vjh_B* 1b8d_B*
Length = 177
Score = 27.5 bits (60), Expect = 3.0
Identities = 10/70 (14%), Positives = 20/70 (28%)
Query: 26 GENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIREITGENIDTSGNMDN 85
N T+ M + + S + L CL ++E + +
Sbjct: 70 SGNCYTNRRMAACLRDGEIILRYVSYALLSGDASVLEDRCLNGLKETYSSLGVPANSNAR 129
Query: 86 FYEILKDGTL 95
I+K +
Sbjct: 130 AVSIMKACAV 139
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC;
2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A*
2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Length = 160
Score = 27.0 bits (59), Expect = 4.2
Identities = 10/91 (10%), Positives = 24/91 (26%), Gaps = 2/91 (2%)
Query: 7 SKYSEELAQECLEWIREIT--GENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQE 64
+ ++ + + ++ G N L L I S + +
Sbjct: 47 ERIVKQAGDQLFQKRPDVVSPGGNAYGEEMTATCLRDLDYYLRLVTYGIVSGDVTPIEEI 106
Query: 65 CLEWIREITGENIDTSGNMDNFYEILKDGTL 95
L +RE+ + + +K
Sbjct: 107 GLVGVREMYKSLGTPISAVAEGVKCMKSVAS 137
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown
function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Length = 205
Score = 27.2 bits (61), Expect = 4.4
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 140 ETFQTVDLWERQNLNSVVICLQSLGRKASINSRNFNLKAISLLWELSGGNY-------GK 192
E T+DL R + + S G A SR L A + L E++ G Y G
Sbjct: 17 EAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGI 76
Query: 193 PSIGPK--EADKNVRHFTEEQLKAGQTV 218
G + + ++ ++G+ V
Sbjct: 77 K--GAECFRDSTLLVETVKQFHRSGRIV 102
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: CIT; 1.85A {Parabacteroides distasonis}
Length = 262
Score = 27.1 bits (60), Expect = 5.3
Identities = 10/94 (10%), Positives = 25/94 (26%), Gaps = 7/94 (7%)
Query: 64 ECLEWIR-------EITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTM 116
E L+ + EI + D ++ D ++ +K +
Sbjct: 26 EALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVY 85
Query: 117 AFKCMENINCFLDVAREMGVPAQETFQTVDLWER 150
+ + A+ M + + W+
Sbjct: 86 VAEKSSDWEKMFKFAKAMDLEFITCEPALSDWDL 119
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL
metabolism, nucleotide-binding, transferase; 2.40A
{Thermococcus kodakarensis}
Length = 497
Score = 27.1 bits (61), Expect = 5.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 3 DRINSKYSEELAQECLEWIREITGENIDT 31
R ++ EE+ +E I+E TG D
Sbjct: 103 CRRTAEMVEEIKREYGTMIKEKTGLVPDA 131
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A
{Anopheles gambiae}
Length = 373
Score = 27.0 bits (60), Expect = 6.3
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 1 MSDRINSKYSEELAQECLEWIREITGENIDT 31
M + Y+ + QE ++ E T
Sbjct: 82 MPRTEHVGYTYDTLQEIATYLLERTELRPKV 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.384
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,593,028
Number of extensions: 206136
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 81
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.7 bits)