RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6125
(242 letters)
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 144
Score = 130 bits (327), Expect = 6e-39
Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 19/150 (12%)
Query: 56 KYSEELAQECLEWIREITGENIDTSG-NMDNFYEILKDGTLLCKLVNDLKPNSVKKI--- 111
EEL + +EWI G ++ F LK+G +L KLVN L P K +
Sbjct: 5 SSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVP 64
Query: 112 -NVSTMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASIN 170
N +M FK ME + FL A + GV + FQTVDL+E +++ +V L +LG A
Sbjct: 65 ENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAV-- 122
Query: 171 SRNFNLKAISLLWELSGGNYGKPSIGPKEA 200
+ G G P+ K
Sbjct: 123 ------------TKNDGNYRGDPNWFMKSG 140
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 121 bits (306), Expect = 3e-36
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 60 ELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFK 119
+ ++ WI TG I DNF + LKDG +LC+L+N L+P SV+K+N +
Sbjct: 3 QTERQLRVWIEGATGRRIG-----DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWH 57
Query: 120 CMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 167
+ENI FL + GV + F+ DL+E N V L +L +A
Sbjct: 58 KLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQA 105
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 108 bits (271), Expect = 3e-30
Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 54 NSKYSEELA--QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKI 111
+ + L E +WI E G ++ G F + L++G +L LV +P+ + KI
Sbjct: 3 TLQAYDYLCRVDEAKKWIEECLGTDL---GPTSTFEQSLRNGVVLALLVQKFQPDKLIKI 59
Query: 112 NV-STMAFKCMENINCFLDVAREMGVPAQETFQTVDLWERQNLNSVVICLQSLGRKASIN 170
+ + F+ +NIN FLD +G+P F+ D++E +NL V+ C+ +L S+
Sbjct: 60 FYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSM- 118
Query: 171 SRNFNLKAISLLWELSGGNYGKPSIGPKEADKNVRHFTEEQLKAGQTVISLQYGSN 226
+ P FT+E + + Q
Sbjct: 119 ---------------------QDLAPPLIKSDENLSFTDEDVSIIVRRLR-QSNVI 152
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 43.1 bits (101), Expect = 1e-05
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 84 DNFYEILKDGTLLCKLVNDLKPNSVKKINVST----MAFKCMENINCFLDVAREMGV 136
+ YE++KDG LLCKL+N P ++ + ++T ++ EN L+ A+ +G
Sbjct: 31 NQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGC 87
Score = 40.0 bits (93), Expect = 2e-04
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Query: 52 TINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKI 111
+ + L+W+ + + NF LKD L+N L P
Sbjct: 138 DVEELLRLPPEKVLLKWMNFHL-KKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPA 196
Query: 112 NVSTMAFKCMENINCFLDVAREMGVP 137
+ +E L A M
Sbjct: 197 TLDAK--DPLERAELVLSHAERMNCK 220
Score = 30.7 bits (69), Expect = 0.15
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 50 KTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFY-EILKDGTLLCKLVNDLKPNSV 108
+ E + L W + +++F + L G L+ ++P V
Sbjct: 381 SLRSRTLGKEMTDADILSWANRKV-RTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVV 439
Query: 109 --KKINVSTMAFKCMENINCFLDVAREMGVP 137
+ + N + VAR++G
Sbjct: 440 NWNLVTKGETDDEKRLNATYIVSVARKLGCS 470
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 39.2 bits (91), Expect = 5e-05
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 82 NMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAREMG 135
+++N + L+DG L L+ L + K + + N+N L V +
Sbjct: 28 HIENLFSDLQDGRRLLDLLEGLTGQKLPKEKG-STRVHALNNVNKALRVLQNNN 80
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 39.2 bits (91), Expect = 7e-05
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 83 MDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDVAREMGVP 137
+ + YE L+DG L L+ L +S+ + M F ++N+ LD R V
Sbjct: 30 ISDLYEDLRDGHNLISLLEVLSGDSLPREKG-RMRFHKLQNVQIALDYLRHRQVK 83
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 38.5 bits (89), Expect = 1e-04
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 66 LEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINV-------STMAF 118
L W + ++NF +KD L+N + P K+
Sbjct: 15 LRWANFHLENSGWQK--INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNET 72
Query: 119 KCMENINCFLDVAREMGVP 137
++ L A ++G
Sbjct: 73 DDLKRAESMLQQADKLGCR 91
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 38.5 bits (89), Expect = 2e-04
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 57 YSEELAQECLEWIREITGENIDTSG------NMDNFYEILKDGTLLCKLVNDLKPNSVKK 110
YSEE + WI + + D N D+ ++ + DG +LCK++N P+++ +
Sbjct: 1 YSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDE 60
Query: 111 INVST---MAFKCMENINCFLDVAREMGVP 137
++ F EN+N L+ A +G
Sbjct: 61 RAINKKKLTPFIIQENLNLALNSASAIGCH 90
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 35.7 bits (82), Expect = 8e-04
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 58 SEELAQEC--LEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVST 115
SE++ + L W + + DNF +DG L +++ KP + V
Sbjct: 2 SEDMTAKEKLLLWSQRMVEGYQGL--RCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYR 59
Query: 116 MAFKCMENINCFLDVA-REMGVPAQETFQTVDLWERQNLNSVVICLQSL 163
+EN++ VA R++GV + VD+ + + S++ + SL
Sbjct: 60 Q--TNLENLDQAFSVAERDLGVTRLLDPEDVDV-PQPDEKSIITYVSSL 105
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 35.3 bits (81), Expect = 0.001
Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 66 LEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENIN 125
L W + T + N+ NF +DG L++ +P+ + + N+
Sbjct: 8 LLWCQMKTAGYPNV--NIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKS--NAHYNLQ 63
Query: 126 CFLDVA-REMGVPAQETFQTVDLWERQNLNSVVICLQSL 163
++A + +G+ + + + + + S++ + +
Sbjct: 64 NAFNLAEQHLGLTKLLDPEDISV-DHPDEKSIITYVVTY 101
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 36.6 bits (84), Expect = 0.002
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 82 NMDNFYEILKDGTLLCKLVNDLKPNSVKKINVS--------TMAFKCMENINCFLDVARE 133
++ +F+ L+DG +L + + + PN+V V+ M FK +EN N +D+ +
Sbjct: 294 SIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKN 353
Query: 134 MGVP 137
G
Sbjct: 354 QGFS 357
Score = 35.8 bits (82), Expect = 0.003
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 66 LEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENIN 125
L W + + + NF + + DG L+N L P + + T ++
Sbjct: 159 LRWFNYHL-KAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTT--DVLQRAE 215
Query: 126 CFLDVAREMGVP 137
L A ++
Sbjct: 216 QVLQNAEKLDCR 227
Score = 35.4 bits (81), Expect = 0.004
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 84 DNFYEILKDGTLLCKLVNDLKPNSVKKINVST-------MAFKCMENINCFLDVAREMGV 136
F++ KDG +L KL+ND P+++ + ++ FKC+EN N ++ A+ MG
Sbjct: 34 FEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGG 93
Score = 33.9 bits (77), Expect = 0.016
Identities = 10/79 (12%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 62 AQECLEWIREITGENIDTSGNMDNFYEI-LKDGTLLCKLVNDLKPNSV--KKINVSTMAF 118
+ + W + + S + +F + + G + +++ +K V + +
Sbjct: 402 DSDMVAWANSMAAKGGKGS-QIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEE 460
Query: 119 KCMENINCFLDVAREMGVP 137
++N + +AR++G
Sbjct: 461 LAIQNARLAISIARKLGAV 479
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 32.9 bits (75), Expect = 0.010
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 66 LEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENIN 125
L W+R+ T N+ NF DG +++ KP+ V M +E +
Sbjct: 11 LSWVRQTTRPYSQV--NVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKM--SPIERLE 66
Query: 126 CFLDVA-REMGVP 137
A +G+
Sbjct: 67 HAFSKAQTYLGIE 79
>d1o3ua_ a.24.16.3 (A:) Hypothetical protein TM0613 {Thermotoga
maritima [TaxId: 2336]}
Length = 126
Score = 28.4 bits (63), Expect = 0.36
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 12 ELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIRE 71
+ E EI E +D + +D + L + ++YS A+ + + +
Sbjct: 56 DFLGELSS-RFEIPEELMDHALELDKACIPTRYPDALPSGSPRNRYSRIEAERLVNYAEK 114
Query: 72 I 72
I
Sbjct: 115 I 115
>d1ufba_ a.24.16.3 (A:) Hypothetical protein TT1696 {Thermus
thermophilus [TaxId: 274]}
Length = 127
Score = 27.3 bits (60), Expect = 0.88
Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 12 ELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKTTINSKYSEELAQECLEWIRE 71
+L + E + ++ + ++ + +D +Y + Y+ A+E L+ ++
Sbjct: 60 DLLADLPEDV-DVPEDLVEAAKVLDKYYIPTRYPDAHPAGPAARHYTRLEAEEALDLAQK 118
Query: 72 I 72
I
Sbjct: 119 I 119
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
N-terminal microtubule binding domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 27.0 bits (60), Expect = 0.92
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 63 QECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMA---FK 119
+ L WI E N+ E L G C+ ++ L P S+ V A +
Sbjct: 6 HDMLAWINESLQLNLTK-------IEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHE 58
Query: 120 CMENINCFLDVAREMGVP 137
++N + MGV
Sbjct: 59 YIQNFKILQAGFKRMGVD 76
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow
(Bos taurus) [TaxId: 9913]}
Length = 284
Score = 28.2 bits (62), Expect = 0.98
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 13/114 (11%)
Query: 55 SKYSEELAQECLEWIREITGENIDT-----SGNMDNFYEILKDGTLLCKLVNDLK--PNS 107
+ Y+ E Q+ +W+ T + SG + L +++ P S
Sbjct: 3 NGYTYEDYQDTAKWLLSHTEQRPQVAVICGSG-LGGLVNKLTQAQTF--DYSEIPNFPES 59
Query: 108 VKKINVSTMAFKCMENINCFLDVARE---MGVPAQETFQTVDLWERQNLNSVVI 158
+ + F + C + R G P + V ++ + ++V+
Sbjct: 60 TVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVV 113
Score = 26.6 bits (58), Expect = 2.7
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 7 SKYSEELAQECLEWIREITGENIDT-----SGNMDNFYEILKD 44
+ Y+ E Q+ +W+ T + SG + L
Sbjct: 3 NGYTYEDYQDTAKWLLSHTEQRPQVAVICGSG-LGGLVNKLTQ 44
>d1ucra_ a.4.5.45 (A:) Dissimilatory sulfite reductase DsvD
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 74
Score = 25.6 bits (56), Expect = 1.7
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 59 EELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKI 111
EE Q+ ++++ SG+ FY D L D+K VKKI
Sbjct: 2 EEAKQKVVDFLNS-------KSGSKSKFY--FND---FTDLFPDMKQREVKKI 42
>d1v8da_ c.140.1.1 (A:) Hypothetical protein TT1679 {Thermus
thermophilus [TaxId: 274]}
Length = 193
Score = 26.6 bits (59), Expect = 2.0
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 71 EITGENIDTSGNMDNFYEILKDGTLLCKLVNDLKPNSVKKINVSTMAFKCMENINCFLDV 130
E+ GE + T +++ + +L+ L+ L V +A + E++N L V
Sbjct: 35 EVLGERVGTRPSLEAAHAVLEG------LLPPLLERGV------HVAVQACEHLNRALVV 82
Query: 131 ARE 133
RE
Sbjct: 83 ERE 85
>d1ikpa1 b.29.1.7 (A:2-251) Exotoxin A, N-terminal domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 250
Score = 27.0 bits (59), Expect = 2.0
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 42 LKDGTLLCKTTINSKYSEELAQECLEWIREITGENIDTSGNMDNFYEILKDGTLLCKLVN 101
LKDG + +++ ++ Q L + + G N +DN I DG L +L
Sbjct: 18 LKDGVRSSRMSVDPAIADTNGQGVLHYSMVLEGGNDALKLAIDNALSITSDG-LTIRLEG 76
Query: 102 DLKPN 106
++PN
Sbjct: 77 GVEPN 81
>d1hlva2 a.4.1.7 (A:67-131) DNA-binding domain of centromere
binding protein B (CENP-B) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 24.7 bits (54), Expect = 3.1
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 50 KTTINSKYSEELAQECLEWIREITGENIDTSGNM 83
KT S Y ++L + W ++I + G +
Sbjct: 1 KTNKLSPY-DKLEGLLIAWFQQIRAAGLPVKGII 33
Score = 23.6 bits (51), Expect = 8.6
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 7 SKYSEELAQECLEWIREITGENIDTSGNM 35
S Y ++L + W ++I + G +
Sbjct: 6 SPY-DKLEGLLIAWFQQIRAAGLPVKGII 33
>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis
sp., strain PCC 6803 [TaxId: 1143]}
Length = 120
Score = 25.1 bits (55), Expect = 4.2
Identities = 5/26 (19%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 11 EELAQECLEWIREITGENIDTSGNMD 36
E++A+ L+++ +T ++ N+
Sbjct: 75 EDIAESVLDFLPGMTRNSLA-ESNIA 99
Score = 25.1 bits (55), Expect = 4.2
Identities = 5/26 (19%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 59 EELAQECLEWIREITGENIDTSGNMD 84
E++A+ L+++ +T ++ N+
Sbjct: 75 EDIAESVLDFLPGMTRNSLA-ESNIA 99
>d1n8yc2 c.10.2.5 (C:323-488) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 166
Score = 24.9 bits (54), Expect = 7.0
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 21 IREITGENIDTSGNMDNFY---------EILKDGTLLCKTTINSKYSEELAQECLEWIRE 71
+ + G TS N+ F L + ++ + E + E + E
Sbjct: 4 MEHLRGARAITSDNVQEFDGCKKIFGSLAFLPESFDGDPSSGIAPLRPEQ-LQVFETLEE 62
Query: 72 ITG 74
ITG
Sbjct: 63 ITG 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.384
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 883,775
Number of extensions: 40504
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 44
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.3 bits)