BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6126
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 6/162 (3%)
Query: 6 RPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAV 65
R + ++ AT ++I NL+++D + +P ++ + +W G +LC++ + Y +
Sbjct: 49 RYTKMKTATNIYIFNLALADALVTT-TMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFT 107
Query: 66 SLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLE 125
S+FT+ ++++RY+ + HP + + C WL + + + +
Sbjct: 108 SIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVRED 167
Query: 126 PSIGSCSI-LPDD----YGHSPKEFLFLVAFVIPCISIVVCY 162
+ CS+ PDD + K +F+ AFVIP + I+VCY
Sbjct: 168 VDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCY 209
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 6 RPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAV 65
R + ++ AT ++I NL+++D + LP ++ + W G LLC+ + Y +
Sbjct: 41 RYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFT 99
Query: 66 SLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLE 125
S+FT+ ++++RY+ + HP + + C W+ G VP + +
Sbjct: 100 SIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVT----Q 155
Query: 126 PSIGSCSIL-----PDDYGHSPKEF-LFLVAFVIPCISIVVCYARIFYIVR 170
P G+ + P Y + + +FL AFV+P + I VCY + +R
Sbjct: 156 PRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLR 206
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 9/170 (5%)
Query: 6 RPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAV 65
R + ++ AT ++I NL+++D + LP + W G+ LC+ + Y +
Sbjct: 152 RHTKMKTATNIYIFNLALADTLVL-LTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFT 210
Query: 66 SLFTVLGITINRYVMIGHPTLYPKLY-SSKFLAFMVACTWLFGFGALVPTWLGVWGRFGL 124
S FT+ ++++RYV I HP + SSK A VA ++ ++V + + G +
Sbjct: 211 STFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVA---IWALASVVGVPVAIMGSAQV 267
Query: 125 EPSIGSCSI---LPDDY-GHSPKEFLFLVAFVIPCISIVVCYARIFYIVR 170
E C + P DY G +FL +F++P + I VCY+ + +R
Sbjct: 268 EDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLR 317
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
Query: 4 FRRPSTVRNATAVFIINLSVSDLMFCCFN-LPLAASTFWQRAWTHGHLLCQLFPLLRYGL 62
F + +++ +FIINL+ SD F N PL + + + W G C+++ +
Sbjct: 59 FTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIF 118
Query: 63 LAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRF 122
+S+ T+ I+I+RY +IG P K S + M+ WL+ + G WG +
Sbjct: 119 GFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG-WGAY 177
Query: 123 GLEPSIGSCS---ILPDDYGHSPKEFLFLVAFVIPCISIVVCYARI 165
LE + +CS I D S +F++ F P + I CY I
Sbjct: 178 TLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNI 223
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
Query: 4 FRRPSTVRNATAVFIINLSVSDLMFCCFN-LPLAASTFWQRAWTHGHLLCQLFPLLRYGL 62
F + +++ +FIINL+ SD F N PL + + + W G C+++ +
Sbjct: 58 FTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIF 117
Query: 63 LAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRF 122
+S+ T+ I+I+RY +IG P K S + M+ WL+ + G WG +
Sbjct: 118 GFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG-WGAY 176
Query: 123 GLEPSIGSCS---ILPDDYGHSPKEFLFLVAFVIPCISIVVCYARI 165
LE + +CS I D S +F++ F P + I CY I
Sbjct: 177 TLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNI 222
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 6 RPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAV 65
R + ++ AT ++I NL+++D + LP + + W G++LC++ + Y +
Sbjct: 44 RYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFT 102
Query: 66 SLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLE 125
S+FT+ ++++RY+ + HP + + + C W+ +P ++ +
Sbjct: 103 SIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYR-Q 161
Query: 126 PSIGSCSIL---PDDYGHS-PKEFLFLVAFVIPCISIVVCYA 163
SI C++ P Y + K +F+ AF++P + I VCY
Sbjct: 162 GSI-DCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYG 202
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Query: 5 RRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLA 64
R+ TV N ++I++LSV+DL+ +P+ W+ G LC + + Y
Sbjct: 37 RKLHTVGN---LYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVAST 93
Query: 65 VSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGL 124
S+F+V + I+RY + P Y K + + + W F ++P LG W F
Sbjct: 94 ASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPI-LG-WNHFMQ 151
Query: 125 EPSIGSCSILPDDYGHSP--KEFLFLVAFVIPCISIVVCYARIFYIVRK 171
+ S+ D+ K ++ F +P + ++ YA+I+ VR+
Sbjct: 152 QTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQ 200
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 1 MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRY 60
++ F R TV N FI +L+ +DL+ +P A+ + WT G+ C+ + +
Sbjct: 66 IAKFERLQTVTN---YFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDV 122
Query: 61 GLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLF-GFGALVPTWLGVW 119
+ S++T+ I ++RY I P Y L + ++ W+ G + +P + W
Sbjct: 123 LCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH-W 181
Query: 120 GRFGLEPSIG-----SCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRK 171
R + +I +C + ++ +V+F +P + +V Y+R+F ++
Sbjct: 182 YRATHQEAINCYAEETCCDFFTNQAYAIAS--SIVSFYVPLVIMVFVYSRVFQEAKR 236
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 12/206 (5%)
Query: 1 MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRY 60
++ F R TV N FI +L+ +DL+ +P A+ + WT G+ C+ + +
Sbjct: 207 IAKFERLQTVTN---YFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDV 263
Query: 61 GLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLF-GFGALVPTWLGVW 119
+ S+ T+ I ++RY I P Y L + ++ W+ G + +P + W
Sbjct: 264 LCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH-W 322
Query: 120 GRFGLEPSIG-----SCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTXX 174
R + +I +C + ++ +V+F +P + +V Y+R+F ++
Sbjct: 323 YRATHQEAINCYAEETCCDFFTNQAYAIAS--SIVSFYVPLVIMVFVYSRVFQEAKRQLQ 380
Query: 175 XXXXXXXXXXXXXXGQYDTMKPPGYG 200
Q + G+G
Sbjct: 381 KIDKSEGRFHVQNLSQVEQDGRTGHG 406
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 85/208 (40%), Gaps = 12/208 (5%)
Query: 1 MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRY 60
++ F R TV N FI +L+ +DL+ +P A+ + WT G+ C+ + +
Sbjct: 58 IAKFERLQTVTN---YFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDV 114
Query: 61 GLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLF-GFGALVPTWLGVW 119
+ S+ T+ I ++RY I P Y L + ++ W+ G + +P + W
Sbjct: 115 LCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH-W 173
Query: 120 GRFGLEPSIG-----SCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTXX 174
R + +I +C + ++ +V+F +P + +V Y+R+F ++
Sbjct: 174 YRATHQEAINCYANETCCDFFTNQAYAIAS--SIVSFYVPLVIMVFVYSRVFQEAKRQLQ 231
Query: 175 XXXXXXXXXXXXXXGQYDTMKPPGYGKK 202
Q + G+G +
Sbjct: 232 KIDKSEGRFHVQNLSQVEQDGRTGHGLR 259
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 85/208 (40%), Gaps = 12/208 (5%)
Query: 1 MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRY 60
++ F R TV N FI +L+ +DL+ +P A+ + WT G+ C+ + +
Sbjct: 59 IAKFERLQTVTN---YFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDV 115
Query: 61 GLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLF-GFGALVPTWLGVW 119
+ S+ T+ I ++RY I P Y L + ++ W+ G + +P + W
Sbjct: 116 LCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH-W 174
Query: 120 GRFGLEPSIG-----SCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTXX 174
R + +I +C + ++ +V+F +P + +V Y+R+F ++
Sbjct: 175 YRATHQEAINCYAEETCCDFFTNQAYAIAS--SIVSFYVPLVIMVFVYSRVFQEAKRQLQ 232
Query: 175 XXXXXXXXXXXXXXGQYDTMKPPGYGKK 202
Q + G+G +
Sbjct: 233 KIDKSEGRFHVQNLSQVEQDGRTGHGLR 260
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 85/208 (40%), Gaps = 12/208 (5%)
Query: 1 MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRY 60
++ F R TV N FI +L+ +DL+ +P A+ + WT G+ C+ + +
Sbjct: 35 IAKFERLQTVTN---YFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDV 91
Query: 61 GLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLF-GFGALVPTWLGVW 119
+ S+ T+ I ++RY I P Y L + ++ W+ G + +P + W
Sbjct: 92 LCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH-W 150
Query: 120 GRFGLEPSIG-----SCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTXX 174
R + +I +C + ++ +V+F +P + +V Y+R+F ++
Sbjct: 151 YRATHQEAINCYANETCCDFFTNQAYAIAS--SIVSFYVPLVIMVFVYSRVFQEAKRQLQ 208
Query: 175 XXXXXXXXXXXXXXGQYDTMKPPGYGKK 202
Q + G+G +
Sbjct: 209 KIDKSEGRFHVQNLSQVEQDGRTGHGLR 236
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 1 MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRY 60
++ F R TV N FI +L+ +DL+ +P A+ + WT G+ C+ + +
Sbjct: 66 IAKFERLQTVTN---YFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDV 122
Query: 61 GLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLF-GFGALVPTWLGVW 119
+ S+ T+ I ++RY I P Y L + ++ W+ G + +P + W
Sbjct: 123 LCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH-W 181
Query: 120 GRFGLEPSIG-----SCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRK 171
R + +I +C + ++ +V+F +P + +V Y+R+F ++
Sbjct: 182 YRATHQEAINCYAEETCCDFFTNQAYAIAS--SIVSFYVPLVIMVFVYSRVFQEAKR 236
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 1 MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRY 60
++ F R TV N FI +L+ +DL+ +P A+ + WT G+ C+ + +
Sbjct: 34 IAKFERLQTVTN---YFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDV 90
Query: 61 GLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLF-GFGALVPTWLGVW 119
+ S+ T+ I ++RY I P Y L + ++ W+ G + +P + W
Sbjct: 91 LCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH-W 149
Query: 120 GRFGLEPSIG-----SCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRK 171
R + +I +C + ++ +V+F +P + +V Y+R+F ++
Sbjct: 150 YRATHQEAINCYAEETCCDFFTNQAYAIAS--SIVSFYVPLVIMVFVYSRVFQEAKR 204
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 1 MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRY 60
++ F R TV N FI +L+ +DL+ +P A+ + WT G+ C+ + +
Sbjct: 65 IAKFERLQTVTN---YFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDV 121
Query: 61 GLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLF-GFGALVPTWLGVW 119
+ S+ T+ I ++RY I P Y L + ++ W+ G + +P + W
Sbjct: 122 LCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH-W 180
Query: 120 GRFGLEPSIG-----SCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRK 171
R + +I +C + ++ +V+F +P + +V Y+R+F ++
Sbjct: 181 YRATHQEAINCYAEETCCDFFTNQAYAIAS--SIVSFYVPLVIMVFVYSRVFQEAKR 235
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 1 MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRY 60
++ F R TV N FI +L+ +DL+ +P A+ + WT G+ C+ + +
Sbjct: 30 IAKFERLQTVTN---YFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDV 86
Query: 61 GLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLF-GFGALVPTWLGVW 119
+ S+ T+ I ++RY I P Y L + ++ W+ G + +P + W
Sbjct: 87 LCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH-W 145
Query: 120 GRFGLEPSIG-----SCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRK 171
R + +I +C + ++ +V+F +P + +V Y+R+F ++
Sbjct: 146 YRATHQEAINCYAEETCCDFFTNQAYAIAS--SIVSFYVPLVIMVFVYSRVFQEAKR 200
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 12/170 (7%)
Query: 6 RPSTVRNATAVFIINLSVSDLMFCCFNLP-LAASTFWQRAWTHGHLLCQLFPLLRYGLLA 64
+ ++ T +++L+V+DL+ +P + W + C +F L +
Sbjct: 65 KERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCT 124
Query: 65 VSLFTVLGITINRYVMIGHPTLYPK---LYSSKFLAFMVACTWLFGFGALVPTWLGVWGR 121
S++ + I+I+RY + P Y S + +A M+ W+ F P G
Sbjct: 125 ASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFG---- 180
Query: 122 FGLEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRK 171
F CSI D+ + +V+F +P V+ YARI+ ++++
Sbjct: 181 FNTTGDPTVCSISNPDF----VIYSSVVSFYLPFGVTVLVYARIYVVLKQ 226
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 26/181 (14%)
Query: 8 STVRNATAVFIINLSVSDLMFCCFNLPLAA--STFWQRAWTHGHLLCQLFPLLRYGLLAV 65
S ++N T F+++L+ +D++ +P A ST + A HG L F L+ L
Sbjct: 35 SNLQNVTNYFVVSLAAADILVGVLAIPFAITISTGFCAA-CHGCLFIACFVLV---LAQS 90
Query: 66 SLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLE 125
S+F++L I I+RY+ I P Y L + A ++A W+ F + LG W G +
Sbjct: 91 SIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLG-WNNCG-Q 148
Query: 126 PSIG------------SC---SILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVR 170
P G +C ++P +Y F F ++P + ++ Y RIF R
Sbjct: 149 PKEGKNHSQGCGEGQVACLFEDVVPMNY---MVYFNFFACVLVPLLLMLGVYLRIFAAAR 205
Query: 171 K 171
+
Sbjct: 206 R 206
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Query: 5 RRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLA 64
R TV N F+ +L+ +DL+ F++ L W G ++C L+ L Y +
Sbjct: 52 RHLQTVNN---YFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSN 108
Query: 65 VSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPT---WLGVWGR 121
S+ +L I+ +RY + P YP ++K M+A W+ F P W + G
Sbjct: 109 ASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGV 168
Query: 122 FGLEPSIGSCSILPDDYGHSPKEF-LFLVAFVIPCISIVVCYARI 165
+E G C I + ++ F + AF +P I + V Y I
Sbjct: 169 RTVED--GECYI--QFFSNAAVTFGTAIAAFYLPVIIMTVLYWHI 209
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 18/178 (10%)
Query: 3 PFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGL 62
F+ ++ F+++L+ +DL+ ++ L + W G+L C L+ + Y
Sbjct: 36 AFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVA 95
Query: 63 LAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRF 122
S+ +L I+ +RY I P Y ++K M+ W+ F P L W F
Sbjct: 96 SNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAIL-FWQYF 154
Query: 123 GLEPSIGSCSILPDDYGHSPKEFL---------FLVAFVIPCISIVVCYARIFYIVRK 171
+G ++ P G +FL + AF +P + + Y RI+ K
Sbjct: 155 -----VGKRTVPP---GECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEK 204
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 8 STVRNATAVFIINLSVSDLMFCCFNLP--LAASTFWQRAWTHGHLLCQLFPLLRYGLLAV 65
S ++N T F+++ + +D++ +P +A ST + A HG L F L+ L A
Sbjct: 35 SNLQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFCAA-CHGCLFIACFVLV---LTAS 90
Query: 66 SLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLE 125
S+F++L I I+RY+ I P Y L + ++A W+ F + LG W G +
Sbjct: 91 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLG-WNNCG-Q 148
Query: 126 PSIGSC---------------SILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVR 170
P G ++P +Y F F ++P + ++ Y RIF R
Sbjct: 149 PKEGKAHSQGCGEGQVACLFEDVVPMNY---MVYFNFFACVLVPLLLMLGVYLRIFLAAR 205
Query: 171 KT 172
+
Sbjct: 206 RQ 207
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFT 69
+R ++NL+V+DL T + G C L ++L++
Sbjct: 69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128
Query: 70 VLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIG 129
++ + I RYV++ P + + VA TW+ P +G W R+ E
Sbjct: 129 LVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQC 186
Query: 130 SCSILPDDYGHSPKE---------FLFLVAFVIPCISIVVCYARIFYIVRK 171
SC I DY ++P E ++F+V F+IP I I CY ++ + V++
Sbjct: 187 SCGI---DY-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKE 233
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFT 69
+R ++NL+V+DL T + G C L ++L++
Sbjct: 68 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127
Query: 70 VLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIG 129
++ + I RYV++ P + + VA TW+ P +G W R+ E
Sbjct: 128 LVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQC 185
Query: 130 SCSILPDDYGHSPKE---------FLFLVAFVIPCISIVVCYARIFYIVRK 171
SC I DY ++P E ++F+V F+IP I I CY ++ + V++
Sbjct: 186 SCGI---DY-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKE 232
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 8 STVRNATAVFIINLSVSDLMFCCFNLPLA---ASTFWQRAWTHGHLLCQLFPLLRYGLLA 64
S ++N T F+++L+ +D+ +P A ++ F A HG L F L+ L
Sbjct: 50 SNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFC--AACHGCLFIACFVLV---LTQ 104
Query: 65 VSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGL 124
S+F++L I I+RY+ I P Y L + ++A W+ F + LG W G
Sbjct: 105 SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLG-WNNCG- 162
Query: 125 EPSIG------------SC---SILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIV 169
+P G +C ++P +Y F F ++P + ++ Y RIF
Sbjct: 163 QPKEGKNHSQGCGEGQVACLFEDVVPMNY---MVYFNFFACVLVPLLLMLGVYLRIFLAA 219
Query: 170 RK 171
R+
Sbjct: 220 RR 221
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFT 69
+R ++NL+V+DL T + G C L ++L++
Sbjct: 69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128
Query: 70 VLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIG 129
++ + I RYV++ P + + VA TW+ P +G W R+ E
Sbjct: 129 LVVLAIERYVVVCKP-MSNFRFGENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQC 186
Query: 130 SCSILPDDYGHSPKE---------FLFLVAFVIPCISIVVCYARIFYIVRK 171
SC I DY ++P E ++F+V F+IP I I CY ++ + V++
Sbjct: 187 SCGI---DY-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKE 233
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFT 69
+R ++NL+V+DL T + G C L ++L++
Sbjct: 68 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127
Query: 70 VLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIG 129
++ + I RYV++ P + + VA TW+ P +G W R+ E
Sbjct: 128 LVVLAIERYVVVCKP-MSNFRFGENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQC 185
Query: 130 SCSILPDDYGHSPKE---------FLFLVAFVIPCISIVVCYARIFYIVRK 171
SC I DY ++P E ++F+V F+IP I I CY ++ + V++
Sbjct: 186 SCGI---DY-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKE 232
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFT 69
+R ++NL+V+DL T + G C L ++L++
Sbjct: 69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128
Query: 70 VLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIG 129
++ + I RYV++ P + + VA TW+ P +G W R+ E
Sbjct: 129 LVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQC 186
Query: 130 SCSILPDDYGHSPKE---------FLFLVAFVIPCISIVVCYARIFYIVRK 171
SC I DY ++P E ++F+V F+IP I I CY ++ + V++
Sbjct: 187 SCGI---DY-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKE 233
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFT 69
+R ++NL+V+DL T + G C L ++L++
Sbjct: 69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWS 128
Query: 70 VLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIG 129
++ + I RYV++ P + + VA TW+ P +G W R+ E
Sbjct: 129 LVVLAIERYVVVCKP-MSNFRFGENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQC 186
Query: 130 SCSILPDDYGHSPKE---------FLFLVAFVIPCISIVVCYARIFYIVRK 171
SC I DY ++P E ++F+V F+IP I I CY ++ + V++
Sbjct: 187 SCGI---DY-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKE 233
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 8 STVRNATAVFIINLSVSDLMFCCFNLPLA---ASTFWQRAWTHGHLLCQLFPLLRYGLLA 64
S ++N T F+++L+ +D+ +P A ++ F A HG L F L+ L
Sbjct: 60 SNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFC--AACHGCLFIACFVLV---LTQ 114
Query: 65 VSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGL 124
S+F++L I I+RY+ I P Y L + ++A W+ F + LG W G
Sbjct: 115 SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLG-WNNCG- 172
Query: 125 EPSIG------------SC---SILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIV 169
+P G +C ++P +Y F F ++P + ++ Y RIF
Sbjct: 173 QPKEGKNHSQGCGEGQVACLFEDVVPMNY---MVYFNFFACVLVPLLLMLGVYLRIFLAA 229
Query: 170 RK 171
R+
Sbjct: 230 RR 231
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 26/181 (14%)
Query: 8 STVRNATAVFIINLSVSDLMFCCFNLPLAA--STFWQRAWTHGHLLCQLFPLLRYGLLAV 65
S ++N T F+++L+ +D+ +P A ST + A HG L F L+ L
Sbjct: 35 SNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAA-CHGCLFIACFVLV---LTQS 90
Query: 66 SLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLE 125
S+F++L I I+RY+ I P Y L + ++A W+ F + LG W G +
Sbjct: 91 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLG-WNNCG-Q 148
Query: 126 PSIG------------SC---SILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVR 170
P G +C ++P +Y F F ++P + ++ Y RIF R
Sbjct: 149 PKEGKQHSQGCGEGQVACLFEDVVPMNY---MVYFNFFACVLVPLLLMLGVYLRIFLAAR 205
Query: 171 K 171
+
Sbjct: 206 R 206
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFT 69
++ T +FI +L+ +DL+ +P A+ + W G LC+L+ L + S+ T
Sbjct: 42 LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 70 VLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTW 104
+ I I+RY+ I P Y L + ++ W
Sbjct: 102 LCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVW 136
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFT 69
++ T +FI +L+ +DL+ +P A+ + W G LC+L+ L + S+ T
Sbjct: 42 LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 70 VLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTW 104
+ I I+RY+ I P Y L + ++ W
Sbjct: 102 LCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVW 136
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFT 69
+R T F++NL+ ++ FN + + W +G C+ + S+++
Sbjct: 63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122
Query: 70 VLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIG 129
+ + +RY+ I HP L P+L S+ ++ W+ P G + PS
Sbjct: 123 MTAVAFDRYMAIIHP-LQPRL-SATATKVVICVIWVLALLLAFPQ--GYYSTTETMPSRV 178
Query: 130 SCSI 133
C I
Sbjct: 179 VCMI 182
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 19/160 (11%)
Query: 17 FIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYG----LLAVSLFTVLG 72
FI NL++SDL+ + A+ A T+ Q F LR G L+ S+F++L
Sbjct: 101 FIGNLALSDLLA---GVAYTANLLLSGATTYKLTPAQWF--LREGSMFVALSASVFSLLA 155
Query: 73 ITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGSCS 132
I I RY+ + L+ + + + AC W+ +L+ L + G + ++ SCS
Sbjct: 156 IAIERYITMLKMKLHNGSNNFRLFLLISAC-WVI---SLILGGLPIMG-WNCISALSSCS 210
Query: 133 -ILPDDYGHSPKEFLF-LVAFVIPCISIVVCYARIFYIVR 170
+LP + H LF F + +SIV+ Y RI+ +VR
Sbjct: 211 TVLPLYHKHY---ILFCTTVFTLLLLSIVILYCRIYSLVR 247
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 7 PSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQ----RAWTHGHLLCQLFPLLRYGL 62
+R+ T + ++LSV+DL+F LP FW W G+ LC+ ++
Sbjct: 76 QKKLRSMTDKYRLHLSVADLLFV-ITLP-----FWAVDAVANWYFGNFLCKAVHVIYTVN 129
Query: 63 LAVSLFTVLGITINRYVMIGHPT 85
L S++ + I+++RY+ I H T
Sbjct: 130 LYSSVWILAFISLDRYLAIVHAT 152
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQ----RAWTHGHLLCQLFPLLRYGLLAV 65
+R+ T + ++LSV+DL+F LP FW W G+ LC+ ++ L
Sbjct: 79 LRSMTDKYRLHLSVADLLFV-ITLP-----FWAVDAVANWYFGNFLCKAVHVIYTVNLYS 132
Query: 66 SLFTVLGITINRYVMIGHPT 85
S++ + I+++RY+ I H T
Sbjct: 133 SVWILAFISLDRYLAIVHAT 152
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQ----RAWTHGHLLCQLFPLLRYGLLAV 65
+R+ T + ++LSV+DL+F LP FW W G+ LC+ ++ L
Sbjct: 79 LRSMTDKYRLHLSVADLLFV-ITLP-----FWAVDAVANWYFGNFLCKAVHVIYTVNLYS 132
Query: 66 SLFTVLGITINRYVMIGHPT 85
S++ + I+++RY+ I H T
Sbjct: 133 SVWILAFISLDRYLAIVHAT 152
>pdb|2F00|A Chain A, Escherichia Coli Murc
pdb|2F00|B Chain B, Escherichia Coli Murc
Length = 491
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 120 GRFGLEPSIGSC--SILPDDYGHSPKE 144
G F LEP G + L DDYGH P E
Sbjct: 332 GEFPLEPVNGKSGTAXLVDDYGHHPTE 358
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 45 WTHGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTW 104
W G C+ + LR + V +++ RY+ I HP L S ++ W
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIW 162
Query: 105 L 105
L
Sbjct: 163 L 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.144 0.483
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,019,377
Number of Sequences: 62578
Number of extensions: 216208
Number of successful extensions: 452
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 41
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)