RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6126
(214 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 110 bits (276), Expect = 9e-30
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 8/186 (4%)
Query: 11 RNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTV 70
R T +F++NL+V+DL+F P A W G LC+L L S+ +
Sbjct: 10 RTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASILLL 69
Query: 71 LGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGS 130
I+I+RY+ I HP Y ++ + + ++ W+ +P L W R E ++ +
Sbjct: 70 TAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTT 129
Query: 131 CSILPDDYGHSPKE-----FLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRAMNMKNMN 185
C I D+ + L+ FV+P + I+VCY I +RK A + +
Sbjct: 130 CLI---DFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARAKRS 186
Query: 186 ANKGQY 191
++K +
Sbjct: 187 SSKERK 192
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 49.8 bits (119), Expect = 2e-07
Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 7/175 (4%)
Query: 8 STVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSL 67
+ ++ ++++NL+VSDL+F LP + W+ G C++ L Y S+
Sbjct: 68 TKIKTPMDIYLLNLAVSDLLFV-MTLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSM 126
Query: 68 FTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPS 127
+ ++++RY+ I HP K+ + K+ + W+ P + +
Sbjct: 127 NFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTP--ILFVYTTKKDHE 184
Query: 128 IGSCSILPDDYGHSPKEFL-FLV---AFVIPCISIVVCYARIFYIVRKTAMKSRA 178
C + ++ + K F+ F + +IP ++ CY++I ++ +
Sbjct: 185 TLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINKSKKN 239
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 36.5 bits (84), Expect = 0.006
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 10 VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFT 69
++ T ++I NL++SDL+F + + F Q W G +C++ Y ++F
Sbjct: 128 IKTITDIYIFNLAISDLIFVIDFPFIIYNEFDQ--WIFGDFMCKVISASYYIGFFSNMFL 185
Query: 70 VLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWL 116
+ ++I+RY I +P + K + + +W+ P +
Sbjct: 186 ITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYF 232
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 32.9 bits (76), Expect = 0.075
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 4 FRRPSTVRNATAVFIINLSVSDLMFC----CFNLPLAA---STFWQRAWTHGHLLCQLFP 56
F + +++N+ + N ++S+ + C + +P+ S + +H + L
Sbjct: 18 FLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSFLPELLNSH---IGGLIL 74
Query: 57 LLRYGLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFG 109
L Y +S T L I++NR+ + P Y K++S K ++ W+
Sbjct: 75 LGLY---EISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIWIIAII 124
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 32.2 bits (74), Expect = 0.16
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 34/123 (27%)
Query: 69 TVLGITINRYVMIGHPTL-YPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPS 127
+ ++ NRY+ I P K++ S L ++ WL G
Sbjct: 92 GISFLSTNRYLAICFPISRLTKIWQSARLWKIILIYWLPGLL------------------ 133
Query: 128 IGSCSILPDDYGH---------SPKEFL---FLVAFVI---PCISIVVCYARIFYIVRKT 172
I + D + + K+ + L+A + CI ++ Y +F+++RK
Sbjct: 134 ISLVVLKNTDIYYDNEENMPVVADKDVIQRFTLIALIFVFVTCIYCIIAYGALFFVIRKK 193
Query: 173 AMK 175
K
Sbjct: 194 FNK 196
>gnl|CDD|176492 cd08762, Cyt_b561_CYBASC3, Vertebrate cytochrome b(561), CYBASC3
gene product. Cytochrome b ascorbate-dependent 3, as
found in vertebrates, which might act as a
ferric-chelate reductase, catalyzing the reduction of
Fe(3+) to Fe(2+), such as associated with the transport
of iron from the endosome to the cytoplasm. It is
assumed that this protein uses ascorbate as the electron
donor. Belongs to the cytochrome b(561) family, which
are secretory vesicle-specific electron transport
proteins. Cytochromes b(561) are integral membrane
proteins that bind two heme groups non-covalently, and
may have six alpha-helical trans-membrane segments.
Length = 179
Score = 31.4 bits (71), Expect = 0.24
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 47 HGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVM---IGHPTLYPKLYSSKFLAFMVACT 103
H LL F L GL AV F + T N Y + +G T + C
Sbjct: 74 HAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICT-----------VALFTCQ 122
Query: 104 WLFGFGALVPTWLGVWGRFGLEP 126
W+ GF + + W +W R ++P
Sbjct: 123 WVMGFTSFLLPWAPMWLRALVKP 145
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 28.7 bits (64), Expect = 2.4
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 16 VFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITI 75
V++ N+++SDLM F+ P W G +C+L + + ++F V I+I
Sbjct: 64 VYLFNIAMSDLMLV-FSFPFIIHNDLNE-WIFGEFMCKLVLGVYFVGFFSNMFFVTLISI 121
Query: 76 NRYVMIGHPT 85
+RY+++ + T
Sbjct: 122 DRYILVVNAT 131
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found
in organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 28.6 bits (65), Expect = 2.5
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 54 LFPLLRYGLLAVSLFT-VLGITINRYVMIGHP--TLYPKLYSSKFL---AFMVACTWLFG 107
LFPLL + AV + ++G R +P L L S L A A WL
Sbjct: 251 LFPLL---VAAVGIIASIIGTFFVRTGKGANPMKALNRGLIVSAILSIVATYFATYWLLP 307
Query: 108 FGALVPTWLGVWG 120
W ++
Sbjct: 308 AAGKGFLWWNLFL 320
>gnl|CDD|131998 TIGR02953, penta_MxKDx, pentapeptide MXKDX repeat protein. Members
of this protein family are small bacterial proteins,
each with an N-terminal signal sequence followed by up
to 11 imperfect repeats of a pentapeptide. The
pentapeptide repeat usually follows the form
Met-Xaa-Lys-Asp-Xaa.
Length = 75
Score = 26.3 bits (58), Expect = 3.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 170 RKTAMKSRAMNMKNMNANKGQYDTMKPPGYGKKYMK 205
+K MK AM M + D MK K MK
Sbjct: 26 KKDTMKKDAMGKDAMAKDAMSKDAMKKDAMKKDAMK 61
>gnl|CDD|222959 PHA02999, PHA02999, Hypothetical protein; Provisional.
Length = 382
Score = 28.2 bits (63), Expect = 3.5
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 163 ARIFYIVRKTAMKSRAMNMKNMN----ANKGQYDTMKPPGY--GKKYMKATVSTDDS 213
+ +K +K + ++ +N Y+T+K GY KK ++ ++T
Sbjct: 97 NTMKMDKKKYKLKKKIKKVREINDTIRFAHYDYETIK-KGYIKFKKMIRKDIATSIP 152
>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 27.8 bits (63), Expect = 4.9
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 54 LFPLLRYGLLAVSLFT-VLGITINRYVMIGHP--TLYPKLYSSKFL---AFMVACTWLFG 107
LFPLL + AV + ++GI R G+P L L + L A WL G
Sbjct: 237 LFPLL---IAAVGIIASIIGIFFVRLGKGGNPMKALNRGLIVTAVLSIVLTYFATYWLLG 293
Query: 108 FGALVPTWLGVWG 120
GA TWL ++G
Sbjct: 294 DGADGFTWLNLFG 306
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine
subtype. Members of this protein family are well
conserved subclass of putative ammonimum transporters,
belonging to the much broader set of
ammonium/methylammonium transporter described by
TIGR00836. Species with this transporter tend to be
marine bacteria. Partial phylogenetic profiling (PPP)
picks a member of this protein family as the single
best-scoring protein vs. a reference profile for the
marine environment Genome Property for a large number of
different query genomes. This finding by PPP suggests
that this transporter family represents an important
adaptation to the marine environment.
Length = 404
Score = 27.7 bits (62), Expect = 5.4
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 98 FMVACT--WLFGF-------GALVPTWLGVWGRFGLEPSIGSCSILPDDYGHSP-KEFLF 147
F +AC L G+ G + LG + P + D +S +F F
Sbjct: 46 FAIACIMYLLVGYNIMYPGGGIFLGGILGSFLLGADNPVGDLIAGFEGDADYSSGSDFFF 105
Query: 148 LVAFVIPCISIV 159
V FV +SIV
Sbjct: 106 QVVFVATAMSIV 117
>gnl|CDD|236251 PRK08375, PRK08375, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 487
Score = 26.8 bits (60), Expect = 9.6
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 62 LLAVSLFTVLGIT-INRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWG 120
LLA SL +L I G P + + M+A + +L LG++
Sbjct: 410 LLASSLLALLYFLRIWYRAFFGPPPPGSEAPKQEAPLGMLAPSLALALLSL---LLGIYA 466
Query: 121 RF 122
Sbjct: 467 GP 468
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.141 0.466
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,060,387
Number of extensions: 1042602
Number of successful extensions: 1221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1211
Number of HSP's successfully gapped: 68
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.8 bits)