RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6126
         (214 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 46.9 bits (110), Expect = 5e-07
 Identities = 23/182 (12%), Positives = 53/182 (29%)

Query: 4   FRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLL 63
             +   +R      ++NL+V+DL            T     +  G   C L         
Sbjct: 62  TVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 121

Query: 64  AVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFG 123
            ++L++++ + I RYV++  P    +   +  +  +     +    A  P          
Sbjct: 122 EIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPE 181

Query: 124 LEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRAMNMKN 183
                            + + F+  +  V   I ++V +     +V      +       
Sbjct: 182 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESA 241

Query: 184 MN 185
             
Sbjct: 242 TT 243


>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase
           MurC {Thermotoga maritima [TaxId: 2336]}
          Length = 151

 Score = 30.3 bits (67), Expect = 0.088
 Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 2/84 (2%)

Query: 117 GVWGRFGLEPSIGSCSI-LPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMK 175
           GV  RF +       +I + DDY H+P E   L+                         +
Sbjct: 1   GVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLER 60

Query: 176 SRAMN-MKNMNANKGQYDTMKPPG 198
                      A++     +    
Sbjct: 61  EDGNFAKALQLADEVVVTEVYDAF 84


>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId:
           1049]}
          Length = 131

 Score = 27.6 bits (61), Expect = 0.61
 Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 170 RKTAMKSRAMNMKNMNAN-KGQYD 192
           R+   +    NM  + AN +G+Y+
Sbjct: 12  RQAGYEFMGWNMGKIKANLEGEYN 35


>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase
           MurC {Haemophilus influenzae [TaxId: 727]}
          Length = 152

 Score = 27.3 bits (59), Expect = 0.85
 Identities = 16/93 (17%), Positives = 23/93 (24%), Gaps = 6/93 (6%)

Query: 117 GVWGRF---GLEPSIGSCSILPDDYGHSPKEF---LFLVAFVIPCISIVVCYARIFYIVR 170
           G   RF   G          L DDYGH P E    +           IV+ +    Y   
Sbjct: 1   GAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRT 60

Query: 171 KTAMKSRAMNMKNMNANKGQYDTMKPPGYGKKY 203
           +         +  ++A                 
Sbjct: 61  RDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGA 93


>d2j8wa1 a.24.3.2 (A:1-128) Cytochrome c' {Rhodocyclus gelatinosus
           [TaxId: 28068]}
          Length = 128

 Score = 26.5 bits (58), Expect = 1.4
 Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 1/24 (4%)

Query: 170 RKTAMKSRAMNMKNMNAN-KGQYD 192
           R++A    A +   + A  +G+  
Sbjct: 12  RQSAFTLIANHFGRVAAMAQGKAP 35


>d1e85a_ a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxId: 512]}
          Length = 125

 Score = 26.0 bits (57), Expect = 1.9
 Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)

Query: 170 RKTAMKSRAMNMKNMNAN-KGQYD 192
           R++A+   A +   M    KGQ  
Sbjct: 12  RQSALTLMASHFGRMTPVVKGQAP 35


>d1s05a_ a.24.3.2 (A:) Cytochrome c-556 {Rhodopseudomonas palustris
           [TaxId: 1076]}
          Length = 129

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 170 RKTAMKSRAMNMKNMNAN-KGQ--YD 192
            +  MK    NM  + A  KG+  YD
Sbjct: 8   TQKLMKDNGRNMMVLGAIAKGEKPYD 33


>d1cpqa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter capsulatus [TaxId:
           1061]}
          Length = 129

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 170 RKTAMKSRAMNMKNMNANKGQYD 192
           R+   KS   +MK M      +D
Sbjct: 10  REAYFKSLGGSMKAMTGVAKAFD 32


>d1bg1a2 b.2.5.5 (A:322-575) STAT3b {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 254

 Score = 26.0 bits (57), Expect = 3.4
 Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 20  NLSVSDLMFCCFNLPLAASTFWQRAWTHGHL 50
              ++   FC  N+     +FW   W    +
Sbjct: 220 GCQITWAKFCKENMAGKGFSFWV--WLDNII 248


>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase)
           {Thermus aquaticus [TaxId: 271]}
          Length = 305

 Score = 25.4 bits (55), Expect = 5.6
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 181 MKNMNANKGQYDTMKPPGYGKKYMKATV 208
            + +N N  ++D  K  G  ++ +K  V
Sbjct: 265 REALNKNPKEFDPRKYLGPAREAVKEVV 292


>d1bf5a2 b.2.5.5 (A:317-568) STAT-1, DNA-binding domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 252

 Score = 25.2 bits (55), Expect = 7.3
 Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 2/31 (6%)

Query: 20  NLSVSDLMFCCFNLPLAASTFWQRAWTHGHL 50
           +  +    FC  N+      FW   W    L
Sbjct: 218 DGLIPWTRFCKENINDKNFPFWL--WIESIL 246


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.141    0.466 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 830,789
Number of extensions: 37956
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 15
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.8 bits)