BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6127
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 143/314 (45%), Gaps = 26/314 (8%)
Query: 198 RTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKN 257
+ + + SE + +Y + +T ++S+ +S +G L S S D I I+ G +
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 258 TINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSP 317
TI+ K G+ + ++ + AS D TL+ + K ++ GH V N +P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 318 VDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLY 375
+ +SGS+D++VR+WD++ + + + P++A ++ +G +++
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 376 DVRSY--------DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNG 427
D S D P SF +KFSP+GK IL +T + ++L+D G
Sbjct: 180 DTASGQCLKTLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 428 NCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQ 487
C+++ +G N +++ SGS D V+IWN + V L G H V
Sbjct: 228 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVI 286
Query: 488 SLQFNPKYHMLASA 501
S +P +++ASA
Sbjct: 287 STACHPTENIIASA 300
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 146/324 (45%), Gaps = 27/324 (8%)
Query: 189 ASLAHSRSSRTITKCSENLVR-SYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIII 247
A+ A S + T+ V+ +Y + +T ++S+ +S +G L S S D I I
Sbjct: 14 AARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI 73
Query: 248 YDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHV 307
+ G + TI+ K G+ + ++ + AS D TL+ + K ++ GH
Sbjct: 74 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHS 131
Query: 308 RKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAI 365
V N +P + +SGS+D++VR+WD++ + + + P++A ++ +G
Sbjct: 132 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVS 190
Query: 366 GVNSDSIKLYDVRSY--------DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS 417
+++D S D P SF +KFSP+GK IL +T +
Sbjct: 191 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSF------------VKFSPNGKYILAATLDN 238
Query: 418 IIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCV 477
++L+D G C+++ +G N +++ SGS D V+IWN + V
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 298
Query: 478 LDGDHPSAVQSLQFNPKYHMLASA 501
L G H V S +P +++ASA
Sbjct: 299 LQG-HTDVVISTACHPTENIIASA 321
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 146/324 (45%), Gaps = 27/324 (8%)
Query: 189 ASLAHSRSSRTITKCSENLVR-SYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIII 247
A+ A S + T+ V+ +Y + +T ++S+ +S +G L S S D I I
Sbjct: 12 AARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI 71
Query: 248 YDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHV 307
+ G + TI+ K G+ + ++ + AS D TL+ + K ++ GH
Sbjct: 72 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHS 129
Query: 308 RKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAI 365
V N +P + +SGS+D++VR+WD++ + + + P++A ++ +G
Sbjct: 130 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVS 188
Query: 366 GVNSDSIKLYDVRSY--------DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS 417
+++D S D P SF +KFSP+GK IL +T +
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSF------------VKFSPNGKYILAATLDN 236
Query: 418 IIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCV 477
++L+D G C+++ +G N +++ SGS D V+IWN + V
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 296
Query: 478 LDGDHPSAVQSLQFNPKYHMLASA 501
L G H V S +P +++ASA
Sbjct: 297 LQG-HTDVVISTACHPTENIIASA 319
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 143/314 (45%), Gaps = 26/314 (8%)
Query: 198 RTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKN 257
+ + + SE + +Y + +T ++S+ +S +G L S S D I I+ G +
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 258 TINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSP 317
TI+ K G+ + ++ + AS D TL+ + K ++ GH V N +P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 318 VDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLY 375
+ +SGS+D++VR+WD++ + + + P++A ++ +G +++
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 376 DVRSY--------DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNG 427
D S D P SF +KFSP+GK IL +T + ++L+D G
Sbjct: 180 DTASGQCLKTLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 428 NCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQ 487
C+++ +G N +++ SGS D V+IWN + V L G H V
Sbjct: 228 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVI 286
Query: 488 SLQFNPKYHMLASA 501
S +P +++ASA
Sbjct: 287 STACHPTENIIASA 300
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 148/315 (46%), Gaps = 28/315 (8%)
Query: 198 RTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKN 257
+ + + SE + +Y + +T ++S+ +S +G L + S D I I+ G +
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 258 TINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSP 317
TI+ K G+ + ++ + AS D TL+ + K ++ GH V N +P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 318 VDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSI-KL 374
+ +SGS+D++VR+WD++ + + + P++A ++ +G + + + D + ++
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDG-SLIVSSSYDGLCRI 178
Query: 375 YDVRSY--------DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFN 426
+D S D P SF +KFSP+GK IL +T + ++L+D
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 427 GNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAV 486
G C+++ +G N +++ SGS D V+IWN + V L G H V
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVV 285
Query: 487 QSLQFNPKYHMLASA 501
S +P +++ASA
Sbjct: 286 ISTACHPTENIIASA 300
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 26/301 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 71
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 72 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLYDVRSY-------- 380
VR+WD++ + + + P++A ++ +G +++D S
Sbjct: 130 VRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Query: 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440
D P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 189 DDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 236
Query: 441 ASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500
+++ SGS D V+IWN + V L G H V S +P +++AS
Sbjct: 237 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIAS 295
Query: 501 A 501
A
Sbjct: 296 A 296
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ + K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 194
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D TL+ K ++ + GH + + N S +I
Sbjct: 195 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 252
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 253 SGSEDNLVYIWNLQTKEIVQKLQ 275
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 26/301 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 68
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 69 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLYDVRSY-------- 380
VR+WD++ + + + P++A ++ +G +++D S
Sbjct: 127 VRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 185
Query: 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440
D P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 186 DDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 233
Query: 441 ASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500
+++ SGS D V+IWN + V L G H V S +P +++AS
Sbjct: 234 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIAS 292
Query: 501 A 501
A
Sbjct: 293 A 293
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ + K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 191
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D TL+ K ++ + GH + + N S +I
Sbjct: 192 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 249
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKLQ 272
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 26/301 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 73 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLYDVRSY-------- 380
VR+WD++ + + + P++A ++ +G +++D S
Sbjct: 131 VRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440
D P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 190 DDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 237
Query: 441 ASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500
+++ SGS D V+IWN + V L G H V S +P +++AS
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIAS 296
Query: 501 A 501
A
Sbjct: 297 A 297
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ + K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D TL+ K ++ + GH + + N S +I
Sbjct: 196 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQ 276
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 26/301 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 73 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLYDVRSY-------- 380
VR+WD++ + + + P++A ++ +G +++D S
Sbjct: 131 VRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440
D P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 190 DDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 237
Query: 441 ASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500
+++ SGS D V+IWN + V L G H V S +P +++AS
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIAS 296
Query: 501 A 501
A
Sbjct: 297 A 297
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ + K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D TL+ K ++ + GH + + N S +I
Sbjct: 196 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQ 276
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 24/300 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 79 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSI-KLYDVRSY--------D 381
VR+WD++ + + + A + + + + D + +++D S D
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 196
Query: 382 KGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNA 441
P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 197 DNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 442 SPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASA 501
+++ SGS D V+IWN + V L G H V S +P +++ASA
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASA 303
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ + K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D TL+ K ++ + GH + + N S +I
Sbjct: 202 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQ 282
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 24/300 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 76 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSI-KLYDVRSY--------D 381
VR+WD++ + + + A + + + + D + +++D S D
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 382 KGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNA 441
P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 194 DNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 442 SPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASA 501
+++ SGS D V+IWN + V L G H V S +P +++ASA
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASA 300
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D TL+ K ++ + GH + + N S +I
Sbjct: 199 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQ 279
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 26/301 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 73
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 74 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLYDVRSY-------- 380
VR+WD++ + + + P++A ++ +G +++D S
Sbjct: 132 VRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 190
Query: 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440
D P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 191 DDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 238
Query: 441 ASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500
+++ SGS D V+IWN + V L G H V S +P +++AS
Sbjct: 239 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIAS 297
Query: 501 A 501
A
Sbjct: 298 A 298
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ + K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 196
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D TL+ K ++ + GH + + N S +I
Sbjct: 197 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 254
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 255 SGSEDNLVYIWNLQTKEIVQKLQ 277
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 26/301 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 89
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 90 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLYDVRSY-------- 380
VR+WD++ + + + P++A ++ +G +++D S
Sbjct: 148 VRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Query: 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440
D P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 207 DDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 254
Query: 441 ASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500
+++ SGS D V+IWN + V L G H V S +P +++AS
Sbjct: 255 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIAS 313
Query: 501 A 501
A
Sbjct: 314 A 314
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ + K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 212
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D TL+ K ++ + GH + + N S +I
Sbjct: 213 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 270
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKLQ 293
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 24/300 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 79 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSI-KLYDVRSY--------D 381
VR+WD++ + + + A + + + + D + +++D S D
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 196
Query: 382 KGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNA 441
P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 197 DNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 442 SPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASA 501
+++ SGS D V+IWN + V L G H V S +P +++ASA
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASA 303
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ + K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D TL+ K ++ + GH + + N S +I
Sbjct: 202 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQ 282
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 26/301 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 79 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLYDVRSY-------- 380
VR+WD++ + + + P++A ++ +G +++D S
Sbjct: 137 VRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440
D P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 196 DDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 243
Query: 441 ASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500
+++ SGS D V+IWN + V L G H V S +P +++AS
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIAS 302
Query: 501 A 501
A
Sbjct: 303 A 303
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ + K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D TL+ K ++ + GH + + N S +I
Sbjct: 202 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQ 282
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 26/301 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 77
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 78 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLYDVRSY-------- 380
VR+WD++ + + + P++A ++ +G +++D S
Sbjct: 136 VRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 194
Query: 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440
D P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 195 DDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 242
Query: 441 ASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500
+++ SGS D V+IWN + V L G H V S +P +++AS
Sbjct: 243 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIAS 301
Query: 501 A 501
A
Sbjct: 302 A 302
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ + K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 200
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D TL+ K ++ + GH + + N S +I
Sbjct: 201 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 258
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 259 SGSEDNLVYIWNLQTKEIVQKLQ 281
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 26/301 (8%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270
Y + +T ++S+ +S +G L S S D I I+ G + TI+ K G+ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
++ + AS D TL+ + K ++ GH V N +P + +SGS+D++
Sbjct: 76 WSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLYDVRSY-------- 380
VR+WD++ + + + P++A ++ +G +++D S
Sbjct: 134 VRIWDVKTGMCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440
D P SF +KFSP+GK IL +T + ++L+D G C+++ +G N
Sbjct: 193 DDNPPVSF------------VKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK 240
Query: 441 ASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500
+++ SGS D V+IWN + V L G H V S +P +++AS
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIAS 299
Query: 501 A 501
A
Sbjct: 300 A 300
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS-KNTINSKKYGV 266
V++ K ++D ++++ ++ DGSL++S S D I+D G K I+ V
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 267 DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL--NLSPVDDSFI- 323
+KF+ + + A+ +D L+ K ++ + GH + + N S +I
Sbjct: 199 SFVKFSPNGKYILAAT--LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 324 SGSYDKTVRVWDLRQPNNVGMIQ 346
SGS D V +W+L+ V +Q
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQ 279
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 133/283 (46%), Gaps = 24/283 (8%)
Query: 224 INSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHAST 283
+ + +S DG + S SDD + +++ G T+ V + F+ T AS
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 77
Query: 284 KVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVG 343
D T++ + + + ++ GH V + SP + S S DKTV++W+ N
Sbjct: 78 --DKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQ 130
Query: 344 MIQ-LSGNKPIA---AYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWT 399
++Q L+G+ A+ P+G A + ++KL++ G G W
Sbjct: 131 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQ-TLTGHSSSVW- 184
Query: 400 GLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGS 459
G+ FSPDG+ I +++ ++L++ NG +Q+L+G +++S F+PD Q +AS S
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG---HSSSVRGVAFSPDGQTIASAS 240
Query: 460 TDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC 502
D V +WN G + L G H S+V + F P +ASA
Sbjct: 241 DDKTVKLWN-RNGQLLQTLTG-HSSSVNGVAFRPDGQTIASAS 281
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 148/321 (46%), Gaps = 29/321 (9%)
Query: 191 LAHSRSSRTITKCSENLV-----RSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQI 245
+A S +TI S++ R+ ++ + ++ + + +S DG + S SDD +
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 246 IIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPG 305
+++ G T+ V + F+ T AS D T++ + + + ++ G
Sbjct: 123 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD--DKTVKLWN-RNGQLLQTLTG 178
Query: 306 HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIA---AYDPEGL 361
H V + SP + S S DKTV++W+ N ++Q L+G+ A+ P+G
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQ 234
Query: 362 AFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRL 421
A + ++KL++ G + G+ F PDG+ I +++ ++L
Sbjct: 235 TIASASDDKTVKLWN----RNGQL--LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Query: 422 FDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGD 481
++ NG +Q+L+G +++S F+PD Q +AS S D V +WN G + L G
Sbjct: 289 WNR-NGQLLQTLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTG- 342
Query: 482 HPSAVQSLQFNPKYHMLASAC 502
H S+V + F+P +ASA
Sbjct: 343 HSSSVWGVAFSPDGQTIASAS 363
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 144/304 (47%), Gaps = 32/304 (10%)
Query: 209 RSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDL 268
R+ ++ + ++ + + +S DG + S SDD + +++ G T+ V
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWG 349
Query: 269 IKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYD 328
+ F+ T AS D T++ + + + ++ GH V + SP + S S D
Sbjct: 350 VAFSPDGQTIASASD--DKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 406
Query: 329 KTVRVWDLRQPNNVGMIQ-LSGNKPIA---AYDPEGLAFAIGVNSDSIKLYD----VRSY 380
KTV++W+ N ++Q L+G+ A+ P+ A + ++KL++ +
Sbjct: 407 KTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT 462
Query: 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440
G +S + G+ FSPDG+ I +++ ++L++ NG +Q+L+G ++
Sbjct: 463 LTGHSSSVR----------GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG---HS 508
Query: 441 ASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500
+S F+PD Q +AS S D V +WN G + L G H S+V + F+P +AS
Sbjct: 509 SSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG-HSSSVWGVAFSPDGQTIAS 566
Query: 501 ACSN 504
A S+
Sbjct: 567 ASSD 570
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 151/325 (46%), Gaps = 37/325 (11%)
Query: 191 LAHSRSSRTITKCSENLV-----RSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQI 245
+A S +TI S++ R+ ++ + ++ + + +S DG + S SDD +
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81
Query: 246 IIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPG 305
+++ G T+ V + F+ T AS D T++ + + + ++ G
Sbjct: 82 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD--DKTVKLWN-RNGQLLQTLTG 137
Query: 306 HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPI---AAYDPEGL 361
H V + SP + S S DKTV++W+ N ++Q L+G+ A+ P+G
Sbjct: 138 HSSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQ 193
Query: 362 AFAIGVNSDSIKLYD----VRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS 417
A + ++KL++ + G +S + G+ FSPDG+ I +++
Sbjct: 194 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVR----------GVAFSPDGQTIASASDDK 243
Query: 418 IIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCV 477
++L++ NG +Q+L+G +++S F PD Q +AS S D V +WN G +
Sbjct: 244 TVKLWNR-NGQLLQTLTG---HSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQT 298
Query: 478 LDGDHPSAVQSLQFNPKYHMLASAC 502
L G H S+V + F+P +ASA
Sbjct: 299 LTG-HSSSVWGVAFSPDGQTIASAS 322
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 137/296 (46%), Gaps = 45/296 (15%)
Query: 191 LAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLD----------YSSDGSLLISCS 240
+A S +TI S++ + K++ N + +L +S DG + S S
Sbjct: 309 VAFSPDGQTIASASDD-----KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 241 DDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYV 300
DD + +++ G T+ V + F+ T AS D T++ + + + +
Sbjct: 364 DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD--DKTVKLWN-RNGQLL 419
Query: 301 RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIA---AY 356
+ GH V + SP D + S S DKTV++W+ N ++Q L+G+ A+
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAF 475
Query: 357 DPEGLAFAIGVNSDSIKLYD----VRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILV 412
P+G A + ++KL++ + G +S + G+ FSPDG+ I
Sbjct: 476 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR----------GVAFSPDGQTIAS 525
Query: 413 STNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWN 468
+++ ++L++ NG +Q+L+G +++S F+PD Q +AS S+D V +WN
Sbjct: 526 ASDDKTVKLWNR-NGQLLQTLTG---HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 28/205 (13%)
Query: 306 HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIA---AYDPEGL 361
H V + SP + S S DKTV++W+ N ++Q L+G+ A+ P+G
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 362 AFAIGVNSDSIKLYD----VRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS 417
A + ++KL++ + G +S + G+ FSPDG+ I +++
Sbjct: 71 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVR----------GVAFSPDGQTIASASDDK 120
Query: 418 IIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCV 477
++L++ NG +Q+L+G +++S F+PD Q +AS S D V +WN G +
Sbjct: 121 TVKLWNR-NGQLLQTLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 175
Query: 478 LDGDHPSAVQSLQFNPKYHMLASAC 502
L G H S+V + F+P +ASA
Sbjct: 176 LTG-HSSSVWGVAFSPDGQTIASAS 199
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 120/268 (44%), Gaps = 15/268 (5%)
Query: 213 VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFT 272
+ K F +D++ +D+ +++ ++ +++ E +I + V KF
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 273 HSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVR 332
K I S D +R + + + V F H + S+ + P +SGS D TV+
Sbjct: 65 ARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 333 VWDLRQPNNVGMIQ-LSGNKPI---AAYDPEGLA-FAIGVNSDSIKLYDVRSYDKGPFAS 387
+W+ NN + Q G++ A++P+ + FA G ++K++ + P +
Sbjct: 123 LWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFT 178
Query: 388 FKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEAT 447
ERG + PD ++ +++ I+++D +CV +L G ++N + A
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AV 235
Query: 448 FTPDSQFVASGSTDGQVHIWNAERGYKV 475
F P + SGS DG + IWN+ YKV
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSST-YKV 262
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 402 KFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASP---LEATFTPDSQFVASG 458
KF I+V ++ IR+F+ G V++ A P P +V SG
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTG------EKVVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 459 STDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPK-YHMLASAC 502
S D V +WN E + + H V + FNPK AS C
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 120/268 (44%), Gaps = 15/268 (5%)
Query: 213 VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFT 272
+ K F +D++ +D+ +++ ++ +++ E +I + V KF
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 273 HSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVR 332
K I S D +R + + + V F H + S+ + P +SGS D TV+
Sbjct: 65 ARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 333 VWDLRQPNNVGMIQ-LSGNKPI---AAYDPEGLA-FAIGVNSDSIKLYDVRSYDKGPFAS 387
+W+ NN + Q G++ A++P+ + FA G ++K++ + P +
Sbjct: 123 LWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFT 178
Query: 388 FKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEAT 447
ERG + PD ++ +++ I+++D +CV +L G ++N + A
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AV 235
Query: 448 FTPDSQFVASGSTDGQVHIWNAERGYKV 475
F P + SGS DG + IWN+ YKV
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSST-YKV 262
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 402 KFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASP---LEATFTPDSQFVASG 458
KF I+V ++ IR+F+ G V++ A P P +V SG
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTG------EKVVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 459 STDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPK-YHMLASAC 502
S D V +WN E + + H V + FNPK AS C
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 120/268 (44%), Gaps = 15/268 (5%)
Query: 213 VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFT 272
+ K F +D++ +D+ +++ ++ I++ E +I + V KF
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 273 HSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVR 332
K I S D +R + + + V F H + S+ + P +SGS D TV+
Sbjct: 65 ARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 333 VWDLRQPNNVGMIQ-LSGNKPI---AAYDPEGLA-FAIGVNSDSIKLYDVRSYDKGPFAS 387
+W+ NN + Q G++ A++P+ + FA G ++K++ + P +
Sbjct: 123 LWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFT 178
Query: 388 FKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEAT 447
ERG + PD ++ +++ I+++D +CV +L G ++N + A
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AV 235
Query: 448 FTPDSQFVASGSTDGQVHIWNAERGYKV 475
F P + SGS DG + IWN+ YKV
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSST-YKV 262
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 402 KFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASP---LEATFTPDSQFVASG 458
KF I+V ++ IR+F+ G V++ A P P +V SG
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTG------EKVVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 459 STDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKY-HMLASAC 502
S D V +WN E + + H V + FNPK AS C
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 137/321 (42%), Gaps = 29/321 (9%)
Query: 192 AHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCE 251
A+ R R T ++S +V K ++ I L + G+ ++S SDD+ + ++
Sbjct: 92 AYIRQHRIDTNWRRGELKSPKVLKGHDDHV--ITCLQFC--GNRIVSGSDDNTLKVWSAV 147
Query: 252 QGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVS 311
G T+ GV ++ I S D TL+ + + + GH V
Sbjct: 148 TGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR 203
Query: 312 SLNLSPVDDSFISGSYDKTVRVWDLR--QPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNS 369
++L + +SGS D T+RVWD+ Q +V M ++ + + YD G G
Sbjct: 204 CMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ-YD--GRRVVSGAYD 258
Query: 370 DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNC 429
+K++D + + + + R L+F DG ++ + + IR++D GNC
Sbjct: 259 FMVKVWDPET--ETCLHTLQGHTNRV---YSLQF--DGIHVVSGSLDTSIRVWDVETGNC 311
Query: 430 VQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDG--DHPSAVQ 487
+ +L+G L + + SG+ D V IW+ + G + L G H SAV
Sbjct: 312 IHTLTG-----HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 488 SLQFNPKYHMLASACSNMAFW 508
LQFN + + +S + W
Sbjct: 367 CLQFNKNFVITSSDDGTVKLW 387
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 18/240 (7%)
Query: 234 SLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLS 293
+++IS S D + +++ E G +T+ V + H K S DATLR
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL-HEKRVV---SGSRDATLRVWD 225
Query: 294 LHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPI 353
+ + + GHV V + +SG+YD V+VWD + +Q N+ +
Sbjct: 226 IETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNR-V 282
Query: 354 AAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVS 413
+ +G+ G SI+++DV + + G + +G++ + ILVS
Sbjct: 283 YSLQFDGIHVVSGSLDTSIRVWDVETGN----CIHTLTGHQSLT-SGMELKDN---ILVS 334
Query: 414 TNG-SIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472
N S ++++D G C+Q+L G + ++ F + FV + S DG V +W+ + G
Sbjct: 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTG 392
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 89/199 (44%), Gaps = 13/199 (6%)
Query: 236 LISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH 295
++S S D + ++D E G + + V +++ + S D ++
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV----VSGAYDFMVKVWDPE 267
Query: 296 DNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAA 355
+ GH +V SL + +SGS D ++RVWD+ N + L+G++ + +
Sbjct: 268 TETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHT--LTGHQSLTS 323
Query: 356 YDPEGLAFAIGVNSDS-IKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST 414
+ N+DS +K++D+++ + + P + T L+F+ + ++ S+
Sbjct: 324 GMELKDNILVSGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFNKN--FVITSS 379
Query: 415 NGSIIRLFDAFNGNCVQSL 433
+ ++L+D G +++L
Sbjct: 380 DDGTVKLWDLKTGEFIRNL 398
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 120/268 (44%), Gaps = 15/268 (5%)
Query: 213 VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFT 272
+ K F +D++ +D+ +++ ++ +++ E +I + V KF
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 273 HSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVR 332
K I S D +R + + + V F H + S+ + P +SGS D TV+
Sbjct: 65 ARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 333 VWDLRQPNNVGMIQ-LSGNKPI---AAYDPEGLA-FAIGVNSDSIKLYDVRSYDKGPFAS 387
+W+ NN + Q G++ A++P+ + FA G ++K++ + P +
Sbjct: 123 LWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFT 178
Query: 388 FKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEAT 447
ERG + PD ++ +++ I+++D +CV +L G ++N + A
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AV 235
Query: 448 FTPDSQFVASGSTDGQVHIWNAERGYKV 475
F P + SGS DG + IWN+ YKV
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSST-YKV 262
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 402 KFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASP---LEATFTPDSQFVASG 458
KF I+V ++ IR+F+ G V++ A P P +V SG
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTG------EKVVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 459 STDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPK-YHMLASAC 502
S D V +WN E + + H V + FNPK AS C
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 120/278 (43%), Gaps = 28/278 (10%)
Query: 234 SLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLS 293
S+++S S+D I ++D E G + T+ V I F HS + AS D T++
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS--GKLLASCSADMTIKLWD 178
Query: 294 LHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKP- 352
+ +R GH VSS+++ P D +S S DKT+++W+++ V +G++
Sbjct: 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT--FTGHREW 236
Query: 353 --IAAYDPEGLAFAIGVNSDSIKLY---------DVRSYDK-------GPFASFKCPGER 394
+ + +G A N +++++ ++R + P +S+ E
Sbjct: 237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA 296
Query: 395 GCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQF 454
T P G +L + I+++D G C+ +L G N L F +F
Sbjct: 297 TGSETKKSGKP-GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL---FHSGGKF 352
Query: 455 VASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFN 492
+ S + D + +W+ + + L+ H V SL F+
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSLDFH 389
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 35/277 (12%)
Query: 215 KVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHS 274
+ + +TD + + + G LL SCS D I ++D + T++ + V + +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 275 KTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW 334
+ AS D T++ + V+ F GH V + + S S D+TVRVW
Sbjct: 204 GDHIVSASR--DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 335 ---------DLRQPNNV-------------GMIQLSGNKPIAAYDPEGLAFAIGVNSDSI 372
+LR+ +V + + +G++ + P G G +I
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP-GPFLLSGSRDKTI 320
Query: 373 KLYDVRSYDKGPFASFKCPGERGCEWT-GLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQ 431
K++DV + G W G+ F GK IL + +R++D N C++
Sbjct: 321 KMWDVST----GMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 432 SLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWN 468
+L+ + + L+ F + +V +GS D V +W
Sbjct: 375 TLNA-HEHFVTSLD--FHKTAPYVVTGSVDQTVKVWE 408
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 51/200 (25%)
Query: 305 GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFA 364
GH V+ + PV +S S D T++VWD Y+
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWD--------------------YETGDFERT 145
Query: 365 IGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDA 424
+ ++DS++ + F GKL+ + I+L+D
Sbjct: 146 LKGHTDSVQ--------------------------DISFDHSGKLLASCSADMTIKLWDF 179
Query: 425 FNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPS 484
C++++ G +N +S + P+ + S S D + +W + GY V G H
Sbjct: 180 QGFECIRTMHGHDHNVSS---VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HRE 235
Query: 485 AVQSLQFNPKYHMLASACSN 504
V+ ++ N ++AS CSN
Sbjct: 236 WVRMVRPNQDGTLIAS-CSN 254
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 233 GSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYL 292
G L+S S D I ++D G T+ V + F HS I S D TLR
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF-HSGGKFI-LSCADDKTLRVW 365
Query: 293 SLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLR 337
+ + ++ H V+SL+ ++GS D+TV+VW+ R
Sbjct: 366 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 437 LNNNASPL-EATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKY 495
L+ + SP+ F P + S S D + +W+ E G L G H +VQ + F+
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSG 162
Query: 496 HMLASACSNMAF 507
+LAS ++M
Sbjct: 163 KLLASCSADMTI 174
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 130/307 (42%), Gaps = 62/307 (20%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD-------------------CEQ 252
R + R + KI ++ + +D LL+S S D ++II+D C
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 253 GTSKNTINSKKYGVDLIKFTHSKTTA---IHASTKVDATLRYLS----LHDNKYV----- 300
S N + G+D I ++ T + S ++ YLS L DN+ V
Sbjct: 106 APSGNYVACG--GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 301 --------------RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ 346
F GH V SL+L+P F+SG+ D + ++WD+R+ GM +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----GMCR 219
Query: 347 --LSGNKP---IAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGL 401
+G++ + P G AFA G + + +L+D+R+ + S C T +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD---NIICGITSV 276
Query: 402 KFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD 461
FS G+L+L + ++DA + L+G +N S L T D VA+GS D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HDNRVSCL--GVTDDGMAVATGSWD 333
Query: 462 GQVHIWN 468
+ IWN
Sbjct: 334 SFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 130/307 (42%), Gaps = 62/307 (20%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD-------------------CEQ 252
R + R + KI ++ + +D LL+S S D ++II+D C
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 253 GTSKNTINSKKYGVDLIKFTHSKTTA---IHASTKVDATLRYLS----LHDNKYV----- 300
S N + G+D I ++ T + S ++ YLS L DN+ V
Sbjct: 106 APSGNYVACG--GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 301 --------------RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ 346
F GH V SL+L+P F+SG+ D + ++WD+R+ GM +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----GMCR 219
Query: 347 --LSGNKP---IAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGL 401
+G++ + P G AFA G + + +L+D+R+ + S C T +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD---NIICGITSV 276
Query: 402 KFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD 461
FS G+L+L + ++DA + L+G +N S L T D VA+GS D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HDNRVSCL--GVTDDGMAVATGSWD 333
Query: 462 GQVHIWN 468
+ IWN
Sbjct: 334 SFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 130/307 (42%), Gaps = 62/307 (20%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD-------------------CEQ 252
R + R + KI ++ + +D LL+S S D ++II+D C
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 253 GTSKNTINSKKYGVDLIKFTHSKTTA---IHASTKVDATLRYLS----LHDNKYV----- 300
S N + G+D I ++ T + S ++ YLS L DN+ V
Sbjct: 117 APSGNYVACG--GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 174
Query: 301 --------------RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ 346
F GH V SL+L+P F+SG+ D + ++WD+R+ GM +
Sbjct: 175 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----GMCR 230
Query: 347 --LSGNKP---IAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGL 401
+G++ + P G AFA G + + +L+D+R+ + S C T +
Sbjct: 231 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD---NIICGITSV 287
Query: 402 KFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD 461
FS G+L+L + ++DA + L+G +N S L T D VA+GS D
Sbjct: 288 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HDNRVSCL--GVTDDGMAVATGSWD 344
Query: 462 GQVHIWN 468
+ IWN
Sbjct: 345 SFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 130/307 (42%), Gaps = 62/307 (20%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD-------------------CEQ 252
R + R + KI ++ + +D LL+S S D ++II+D C
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 253 GTSKNTINSKKYGVDLIKFTHSKTTA---IHASTKVDATLRYLS----LHDNKYV----- 300
S N + G+D I ++ T + S ++ YLS L DN+ V
Sbjct: 106 APSGNYVACG--GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 301 --------------RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ 346
F GH V SL+L+P F+SG+ D + ++WD+R+ GM +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----GMCR 219
Query: 347 --LSGNKP---IAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGL 401
+G++ + P G AFA G + + +L+D+R+ + S C T +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD---NIICGITSV 276
Query: 402 KFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD 461
FS G+L+L + ++DA + L+G +N S L T D VA+GS D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HDNRVSCL--GVTDDGMAVATGSWD 333
Query: 462 GQVHIWN 468
+ IWN
Sbjct: 334 SFLKIWN 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 7/216 (3%)
Query: 301 RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIA-AYDPE 359
R GH+ K+ +++ +S S D + +WD N V I L + + AY P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 360 GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSII 419
G A G + +Y++++ + S + G G + +F D + I+ S+ +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 420 RLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLD 479
L+D Q + + + + PD++ SG+ D +W+ G
Sbjct: 167 ALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 480 GDHPSAVQSLQFNPKYHMLASACSNMAFWIPTLSAD 515
G H S + ++ F P + A+ + + L AD
Sbjct: 224 G-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 130/307 (42%), Gaps = 62/307 (20%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD-------------------CEQ 252
R + R + KI ++ + +D LL+S S D ++II+D C
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 253 GTSKNTINSKKYGVDLIKFTHSKTTA---IHASTKVDATLRYLS----LHDNKYV----- 300
S N + G+D I ++ T + S ++ YLS L DN+ V
Sbjct: 106 APSGNYVACG--GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 301 --------------RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ 346
F GH V SL+L+P F+SG+ D + ++WD+R+ GM +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----GMCR 219
Query: 347 --LSGNKP---IAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGL 401
+G++ + P G AFA G + + +L+D+R+ + S C T +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD---NIICGITSV 276
Query: 402 KFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD 461
FS G+L+L + ++DA + L+G +N S L T D VA+GS D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HDNRVSCL--GVTDDGMAVATGSWD 333
Query: 462 GQVHIWN 468
+ IWN
Sbjct: 334 SFLKIWN 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 7/216 (3%)
Query: 301 RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIA-AYDPE 359
R GH+ K+ +++ +S S D + +WD N V I L + + AY P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 360 GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSII 419
G A G + +Y++++ + S + G G + +F D + I+ S+ +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 420 RLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLD 479
L+D Q + + + + PD++ SG+ D +W+ G
Sbjct: 167 ALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 480 GDHPSAVQSLQFNPKYHMLASACSNMAFWIPTLSAD 515
G H S + ++ F P + A+ + + L AD
Sbjct: 224 G-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 108/282 (38%), Gaps = 47/282 (16%)
Query: 217 FRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKT 276
+ + D++ +SSD S + +CS D ++ I+D G +T + V+ FT+
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 277 TAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDL 336
+ A+ D L+ L+ + GH V+ SP D+ S S D T+R+WD+
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 337 RQPN-----NVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCP 391
R N NV LS P PE + + KC
Sbjct: 773 RSANERKSINVKRFFLSSEDP-----PEDVEVIV-----------------------KC- 803
Query: 392 GERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPD 451
C W S DG I+V+ ++ LFD + + ++++ F+P
Sbjct: 804 ----CSW-----SADGDKIIVAAKNKVL-LFDIHTSGLLAEIH--TGHHSTIQYCDFSPY 851
Query: 452 SQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNP 493
+ V +WN + KV G H S V + F+P
Sbjct: 852 DHLAVIALSQYCVELWNIDSRLKVADCRG-HLSWVHGVMFSP 892
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 19/219 (8%)
Query: 224 INSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHAST 283
+ + +++DG LIS S+D I +++ + G ++ D S+ S
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL----SW 1061
Query: 284 KVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW--DLRQPNN 341
D T++ ++ + R F H V S +S F S S DKT ++W DL P
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-- 1119
Query: 342 VGMIQLSGNK---PIAAYDPEGLAFAIGVNSDSIKLYDVRS----YDKGPFASFKCPGER 394
+ +L G+ +A+ +G+ A G ++ I++++V + P + +
Sbjct: 1120 --LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177
Query: 395 GCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSL 433
G T + FSPD K ++ + G ++ ++ G+ Q+
Sbjct: 1178 GGWVTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQTF 1214
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 16/170 (9%)
Query: 305 GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFA 364
GH+ V + SP SF++ S D+T+RVW+ ++ I L + + E + A
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Query: 365 IGVNSDSIKLYDVRS--YDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLF 422
+ N ++L ++ D P A C C SP + + I++
Sbjct: 940 VD-NIRGLQLIAGKTGQIDYLPEAQVSCC----C------LSPHLEYVAFGDEDGAIKII 988
Query: 423 DAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472
+ N S G + + FT D + + S S D + +WN + G
Sbjct: 989 ELPNNRVFSSGVG---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/334 (17%), Positives = 116/334 (34%), Gaps = 83/334 (24%)
Query: 218 RENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLI-------- 269
R + ++ + +S DGS ++ SDD I +++ ++ KN+ K +D++
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK-VCKNSAIVLKQEIDVVFQENETMV 937
Query: 270 ---------KFTHSKTTAIH-------------------ASTKVDATLRYLSLHDNKYVR 301
+ KT I A D ++ + L +N+
Sbjct: 938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997
Query: 302 YFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW------------------DLRQPNNVG 343
GH + V + + + IS S D ++VW D R +
Sbjct: 998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR 1057
Query: 344 MIQLSGNKPIAAYD------------PEGLAFAIGVNSDSIKLYDVRSYDKGPFASF--- 388
++ S + + ++ +G + ++SD+ K + SF
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 389 ----KCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLS------GVLN 438
+ G GC FS DG L+ + IR+++ +G + S + G
Sbjct: 1118 SPLHELKGHNGCVRCS-AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTAT 1176
Query: 439 NNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472
+ + F+PDS+ + S G + WN G
Sbjct: 1177 HGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 108/282 (38%), Gaps = 47/282 (16%)
Query: 217 FRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKT 276
+ + D++ +SSD S + +CS D ++ I+D G +T + V+ FT+
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 277 TAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDL 336
+ A+ D L+ L+ + GH V+ SP D+ S S D T+R+WD+
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 337 RQPN-----NVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCP 391
R N NV LS P PE + + KC
Sbjct: 780 RSANERKSINVKRFFLSSEDP-----PEDVEVIV-----------------------KC- 810
Query: 392 GERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPD 451
C W S DG I+V+ ++ LFD + + ++++ F+P
Sbjct: 811 ----CSW-----SADGDKIIVAAKNKVL-LFDIHTSGLLAEIH--TGHHSTIQYCDFSPY 858
Query: 452 SQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNP 493
+ V +WN + KV G H S V + F+P
Sbjct: 859 DHLAVIALSQYCVELWNIDSRLKVADCRG-HLSWVHGVMFSP 899
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 19/219 (8%)
Query: 224 INSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHAST 283
+ + +++DG LIS S+D I +++ + G ++ D S+ S
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL----SW 1068
Query: 284 KVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW--DLRQPNN 341
D T++ ++ + R F H V S +S F S S DKT ++W DL P
Sbjct: 1069 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-- 1126
Query: 342 VGMIQLSGNK---PIAAYDPEGLAFAIGVNSDSIKLYDVRS----YDKGPFASFKCPGER 394
+ +L G+ +A+ +G+ A G ++ I++++V + P + +
Sbjct: 1127 --LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1184
Query: 395 GCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSL 433
G T + FSPD K ++ + G ++ ++ G+ Q+
Sbjct: 1185 GGWVTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQTF 1221
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 16/170 (9%)
Query: 305 GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFA 364
GH+ V + SP SF++ S D+T+RVW+ ++ I L + + E + A
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Query: 365 IGVNSDSIKLYDVRS--YDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLF 422
+ N ++L ++ D P A C C SP + + I++
Sbjct: 947 VD-NIRGLQLIAGKTGQIDYLPEAQVSCC----C------LSPHLEYVAFGDEDGAIKII 995
Query: 423 DAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472
+ N S G + + FT D + + S S D + +WN + G
Sbjct: 996 ELPNNRVFSSGVG---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/334 (17%), Positives = 116/334 (34%), Gaps = 83/334 (24%)
Query: 218 RENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLI-------- 269
R + ++ + +S DGS ++ SDD I +++ ++ KN+ K +D++
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK-VCKNSAIVLKQEIDVVFQENETMV 944
Query: 270 ---------KFTHSKTTAIH-------------------ASTKVDATLRYLSLHDNKYVR 301
+ KT I A D ++ + L +N+
Sbjct: 945 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 1004
Query: 302 YFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW------------------DLRQPNNVG 343
GH + V + + + IS S D ++VW D R +
Sbjct: 1005 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR 1064
Query: 344 MIQLSGNKPIAAYD------------PEGLAFAIGVNSDSIKLYDVRSYDKGPFASF--- 388
++ S + + ++ +G + ++SD+ K + SF
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 389 ----KCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLS------GVLN 438
+ G GC FS DG L+ + IR+++ +G + S + G
Sbjct: 1125 SPLHELKGHNGCVRCS-AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTAT 1183
Query: 439 NNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472
+ + F+PDS+ + S G + WN G
Sbjct: 1184 HGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1215
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 31/296 (10%)
Query: 231 SDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLR 290
SDGSL+ SDD + + NT +S + + S A+ D +R
Sbjct: 93 SDGSLVARLSDDSAA----NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148
Query: 291 YLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGN 350
+ + K V GH + + SL+ P D +SGS D+TVR+WDLR + +
Sbjct: 149 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 208
Query: 351 KPIAAYDP-EGLAFAIGVNSDSIKLYDVRS---YDKGPFASFKCPGERGCEWTGLKFSPD 406
A P +G A G +++++D + ++ + G + ++ + F+ D
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS-VVFTRD 267
Query: 407 GKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATF------------TPDSQF 454
G+ ++ +GS+ R +N + S N+ E T+ T + ++
Sbjct: 268 GQSVV---SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 324
Query: 455 VASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSL------QFNPKYHMLASACSN 504
+ SGS D V W+ + G + +L G H ++V S+ P+Y++ A+ +
Sbjct: 325 ILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVISVAVANGSSLGPEYNVFATGSGD 379
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Query: 201 TKCSENLVRSY-----RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS 255
T + L+R + ++ + + + I SLDY G L+S S D + I+D G
Sbjct: 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199
Query: 256 KNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYF-------PGHVR 308
T+ S + GV + + I A + +D +R V GH
Sbjct: 200 SLTL-SIEDGVTTVAVSPGDGKYIAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKD 257
Query: 309 KVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN 341
V S+ + S +SGS D++V++W+L+ NN
Sbjct: 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 24/194 (12%)
Query: 320 DSFISGSYDKTVRVWDLRQPNNVGMIQLSGNK-PIAAYD-PEGLAFAIGVNSDS-IKLYD 376
++ ++GS D V+VW R L G++ + + D L A + D+ I+L+D
Sbjct: 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108
Query: 377 ------VRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCV 430
++S D GP + WT L FSPD + + T+ + +F +G
Sbjct: 109 LENGKQIKSIDAGPVDA----------WT-LAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 431 QSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQ 490
SL L ++PD +++ASG+ DG ++I++ G + L+G H ++SL
Sbjct: 158 YSLD---TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG-HAMPIRSLT 213
Query: 491 FNPKYHMLASACSN 504
F+P +L +A +
Sbjct: 214 FSPDSQLLVTASDD 227
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 18/262 (6%)
Query: 236 LISCSDDDQIIIYDC--EQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLS 293
+++ S DD + ++ E+ + ++ + GV + +H T I AS+ +DA +R
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLPIAASSSLDAHIRLWD 108
Query: 294 LHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPI 353
L + K ++ +L SP +G++ V ++ + + G +
Sbjct: 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 354 A-AYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILV 412
+ AY P+G A G I ++D+ + G L FSPD +L++
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIAT---GKL--LHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 413 STNGSIIRLFDAFNGNCVQSLSGVLNNNAS-PLEATFTPDSQFVASGSTDGQVHIWNAER 471
+++ I+++D + N L+G L+ +AS L F PD S S+D V +W+
Sbjct: 224 ASDDGYIKIYDVQHAN----LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV-- 277
Query: 472 GYKVCVLD-GDHPSAVQSLQFN 492
G + CV DH V +++N
Sbjct: 278 GTRTCVHTFFDHQDQVWGVKYN 299
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 40/227 (17%)
Query: 219 ENTDKINSLD----------YSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDL 268
EN +I S+D +S D L + + ++ I+ E G + +++++ G +
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR--GKFI 167
Query: 269 IKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYD 328
+ +S AS +D + + K + GH + SL SP ++ S D
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227
Query: 329 KTVRVWDLRQPNNVGMIQLSGNKPI---AAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPF 385
++++D++ N G LSG+ A+ P+ F + S+K++DV
Sbjct: 228 GYIKIYDVQHANLAGT--LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV-------- 277
Query: 386 ASFKCPGERGCEWT---------GLKFSPDGKLILVSTNGSIIRLFD 423
G R C T G+K++ +G I+ + I ++D
Sbjct: 278 ------GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 217 FRENTDKINSLDYSSDGSLLISCSDDDQIIIYDC 250
F ++ D++ + Y+ +GS ++S DD +I IYDC
Sbjct: 286 FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 47/248 (18%)
Query: 220 NTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAI 279
+T+ +++ +++ +++ S D ++D E G + + V + S+T
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 280 HASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQP 339
S D + + V+ F H V+S+ P D+F SGS D T R++DLR
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR-- 270
Query: 340 NNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWT 399
++ +A Y E + F +
Sbjct: 271 ---------ADREVAIYSKESIIFGA---------------------------------S 288
Query: 400 GLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGS 459
+ FS G+L+ N I ++D G+ V L G N S L +PD SGS
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG-HENRVSTLRV--SPDGTAFCSGS 345
Query: 460 TDGQVHIW 467
D + +W
Sbjct: 346 WDHTLRVW 353
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKK---Y 264
+RS + + F + +NS+ Y G S SDD +YD + + I SK+ +
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL-RADREVAIYSKESIIF 285
Query: 265 GVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFIS 324
G + F+ S D T+ + V GH +VS+L +SP +F S
Sbjct: 286 GASSVDFSLSGRLLFAGYN--DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 325 GSYDKTVRVW 334
GS+D T+RVW
Sbjct: 344 GSWDHTLRVW 353
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 88/225 (39%), Gaps = 14/225 (6%)
Query: 298 KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIA-AY 356
K R GH KV ++ +S S D V VWD N + + +A AY
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 357 DPEGLAFAIGVNSDSIKLYDVRSYDKGP--FASFKCPGERGCEWTGLKFSPDGKLILVST 414
P G A A G + +Y + ++DK A K + F+ IL ++
Sbjct: 115 APSGCAIACGGLDNKCSVYPL-TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 415 NGSIIRLFDAFNGNCVQSLSG----VLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE 470
L+D +G +QS G VL + +P E T FV SG D + +W+
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT----FV-SGGCDKKAMVWDMR 228
Query: 471 RGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFWIPTLSAD 515
G V + H S V S+++ P AS + + L AD
Sbjct: 229 SGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 23/217 (10%)
Query: 301 RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVG-MIQLSGNKPIAAYDPE 359
R GH VS + +S +SGS+D T+R+WDL + + + A+ +
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 360 GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTG-LKFSPDGKLILVSTNGSI 418
G +IKL++ K + E EW ++FSP+ ++ + G
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCK-----YTVQDESHSEWVSCVRFSPNSSNPIIVSCG-W 170
Query: 419 IRLFDAFN-GNCVQSL-----SGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472
+L +N NC +G LN T +PD ASG DGQ +W+ G
Sbjct: 171 DKLVKVWNLANCKLKTNHIGHTGYLNT------VTVSPDGSLCASGGKDGQAMLWDLNEG 224
Query: 473 YKVCVLDGDHPSAVQSLQFNP-KYHMLASACSNMAFW 508
+ LDG + +L F+P +Y + A+ ++ W
Sbjct: 225 KHLYTLDGG--DIINALCFSPNRYWLCAATGPSIKIW 259
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 112/279 (40%), Gaps = 37/279 (13%)
Query: 215 KVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHS 274
+ R ++ ++ + SSDG +S S D + ++D GT+ V + F+
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 275 KTTAIHASTKVDATLR-YLSLHDNKYVRYFPGHVRKVSSLNLSPVDDS--FISGSYDKTV 331
+ S D T++ + +L KY H VS + SP + +S +DK V
Sbjct: 117 NRQIVSGSR--DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 332 RVWDLR----QPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVR------SYD 381
+VW+L + N++G +G P+G A G L+D+ + D
Sbjct: 175 KVWNLANCKLKTNHIGH---TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 231
Query: 382 KGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVL---N 438
G + C FSP+ + L + G I+++D V L + +
Sbjct: 232 GGDIINALC------------FSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 278
Query: 439 NNASPLEAT---FTPDSQFVASGSTDGQVHIWNAERGYK 474
+ A P + T ++ D Q + +G TD V +W G +
Sbjct: 279 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 23/217 (10%)
Query: 301 RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVG-MIQLSGNKPIAAYDPE 359
R GH VS + +S +SGS+D T+R+WDL + + + A+ +
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 360 GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTG-LKFSPDGKLILVSTNGSI 418
G +IKL++ K + E EW ++FSP+ ++ + G
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCK-----YTVQDESHSEWVSCVRFSPNSSNPIIVSCG-W 193
Query: 419 IRLFDAFN-GNCVQSL-----SGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472
+L +N NC +G LN T +PD ASG DGQ +W+ G
Sbjct: 194 DKLVKVWNLANCKLKTNHIGHTGYLNT------VTVSPDGSLCASGGKDGQAMLWDLNEG 247
Query: 473 YKVCVLDGDHPSAVQSLQFNP-KYHMLASACSNMAFW 508
+ LDG + +L F+P +Y + A+ ++ W
Sbjct: 248 KHLYTLDGG--DIINALCFSPNRYWLCAATGPSIKIW 282
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 112/279 (40%), Gaps = 37/279 (13%)
Query: 215 KVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHS 274
+ R ++ ++ + SSDG +S S D + ++D GT+ V + F+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 275 KTTAIHASTKVDATLR-YLSLHDNKYVRYFPGHVRKVSSLNLSPVDDS--FISGSYDKTV 331
+ S D T++ + +L KY H VS + SP + +S +DK V
Sbjct: 140 NRQIVSGSR--DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 332 RVWDLR----QPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVR------SYD 381
+VW+L + N++G +G P+G A G L+D+ + D
Sbjct: 198 KVWNLANCKLKTNHIGH---TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 254
Query: 382 KGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVL---N 438
G + C FSP+ + L + G I+++D V L + +
Sbjct: 255 GGDIINALC------------FSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 301
Query: 439 NNASPLEAT---FTPDSQFVASGSTDGQVHIWNAERGYK 474
+ A P + T ++ D Q + +G TD V +W G +
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 111/279 (39%), Gaps = 63/279 (22%)
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKF----------THSKTTAIHASTK 284
LL+S S D +I + K T + +K+GV + F T + A S
Sbjct: 32 LLLSASRDKTLISW-------KLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84
Query: 285 VDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGM 344
D TLR + + + F GH V S+++ ISGS DKT++VW ++
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK------- 137
Query: 345 IQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFS 404
+ LA +G N D + V P E+ +
Sbjct: 138 -------------GQCLATLLGHN-DWVSQVRV------------VPNEKADD------- 164
Query: 405 PDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQV 464
D I+ + N +++ A+N N Q + + +N++ T +PD +AS DG++
Sbjct: 165 -DSVTIISAGNDKMVK---AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 465 HIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS 503
+WN + L V SL F+P + LA+A +
Sbjct: 221 MLWNLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATA 257
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Query: 180 FVSRVLTMAASLAHSRSSRTITKCSENLVRSY-----RVAKVFRENTDKINSLDYSSDGS 234
+VS+V + A S I+ ++ +V+++ ++ F + IN+L S DG+
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL 294
L+ S D +I++++ + T++++ L + A +T + + SL
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI----KVFSL 265
Query: 295 HDNKYVR-----YFPGHVRKVS----SLNLSPVDDSFISGSYDKTVRVWDLRQPN 340
D +Y+ F G+ + SL S + +G D +RVW + N
Sbjct: 266 -DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 111/279 (39%), Gaps = 63/279 (22%)
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKF----------THSKTTAIHASTK 284
LL+S S D +I + K T + +K+GV + F T + A S
Sbjct: 32 LLLSASRDKTLISW-------KLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84
Query: 285 VDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGM 344
D TLR + + + F GH V S+++ ISGS DKT++VW ++
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK------- 137
Query: 345 IQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFS 404
+ LA +G N D + V P E+ +
Sbjct: 138 -------------GQCLATLLGHN-DWVSQVRV------------VPNEKADD------- 164
Query: 405 PDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQV 464
D I+ + N +++ A+N N Q + + +N++ T +PD +AS DG++
Sbjct: 165 -DSVTIISAGNDKMVK---AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 465 HIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS 503
+WN + L V SL F+P + LA+A +
Sbjct: 221 MLWNLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATA 257
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 19/169 (11%)
Query: 180 FVSRVLTMAASLAHSRSSRTITKCSENLVRSY-----RVAKVFRENTDKINSLDYSSDGS 234
+VS+V + A S I+ ++ +V+++ ++ F + IN+L S DG+
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL 294
L+ S D +I++++ + T++++ L + A +T + + SL
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI----KVFSL 265
Query: 295 HDNKYV-----RYFPGHVRKVS----SLNLSPVDDSFISGSYDKTVRVW 334
D +Y+ F G+ + SL S + +G D +RVW
Sbjct: 266 -DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 111/279 (39%), Gaps = 63/279 (22%)
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKF----------THSKTTAIHASTK 284
LL+S S D +I + K T + +K+GV + F T + A S
Sbjct: 32 LLLSASRDKTLISW-------KLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84
Query: 285 VDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGM 344
D TLR + + + F GH V S+++ ISGS DKT++VW ++
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK------- 137
Query: 345 IQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFS 404
+ LA +G N D + V P E+ +
Sbjct: 138 -------------GQCLATLLGHN-DWVSQVRV------------VPNEKADD------- 164
Query: 405 PDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQV 464
D I+ + N +++ A+N N Q + + +N++ T +PD +AS DG++
Sbjct: 165 -DSVTIISAGNDKMVK---AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 465 HIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS 503
+WN + L V SL F+P + LA+A +
Sbjct: 221 MLWNLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATA 257
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Query: 180 FVSRVLTMAASLAHSRSSRTITKCSENLVRSY-----RVAKVFRENTDKINSLDYSSDGS 234
+VS+V + A S I+ ++ +V+++ ++ F + IN+L S DG+
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL 294
L+ S D +I++++ + T++++ L + A +T + + SL
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI----KVFSL 265
Query: 295 HDNKYV-----RYFPGHVRKVS----SLNLSPVDDSFISGSYDKTVRVWDLRQPN 340
D +Y+ F G+ + SL S + +G D +RVW + N
Sbjct: 266 -DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 111/279 (39%), Gaps = 63/279 (22%)
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKF----------THSKTTAIHASTK 284
LL+S S D +I + K T + +K+GV + F T + A S
Sbjct: 32 LLLSASRDKTLISW-------KLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84
Query: 285 VDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGM 344
D TLR + + + F GH V S+++ ISGS DKT++VW ++
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK------- 137
Query: 345 IQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFS 404
+ LA +G N D + V P E+ +
Sbjct: 138 -------------GQCLATLLGHN-DWVSQVRV------------VPNEKADD------- 164
Query: 405 PDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQV 464
D I+ + N +++ A+N N Q + + +N++ T +PD +AS DG++
Sbjct: 165 -DSVTIISAGNDKMVK---AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 465 HIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS 503
+WN + L V SL F+P + LA+A +
Sbjct: 221 MLWNLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATA 257
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 72/170 (42%), Gaps = 9/170 (5%)
Query: 180 FVSRVLTMAASLAHSRSSRTITKCSENLVRSY-----RVAKVFRENTDKINSLDYSSDGS 234
+VS+V + A S I+ ++ +V+++ ++ F + IN+L S DG+
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDA-TLRYLS 293
L+ S D +I++++ + T++++ L + A +T + +L
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 294 LHDN---KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPN 340
L D+ ++ Y SL S + +G D +RVW + N
Sbjct: 270 LVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 111/279 (39%), Gaps = 63/279 (22%)
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKF----------THSKTTAIHASTK 284
LL+S S D +I + K T + +K+GV + F T + A S
Sbjct: 26 LLLSASRDKTLISW-------KLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 78
Query: 285 VDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGM 344
D TLR + + + F GH V S+++ ISGS DKT++VW ++
Sbjct: 79 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK------- 131
Query: 345 IQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFS 404
+ LA +G N D + V P E+ +
Sbjct: 132 -------------GQCLATLLGHN-DWVSQVRV------------VPNEKADD------- 158
Query: 405 PDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQV 464
D I+ + N +++ A+N N Q + + +N++ T +PD +AS DG++
Sbjct: 159 -DSVTIISAGNDKMVK---AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 214
Query: 465 HIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS 503
+WN + L V SL F+P + LA+A +
Sbjct: 215 MLWNLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATA 251
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Query: 180 FVSRVLTMAASLAHSRSSRTITKCSENLVRSY-----RVAKVFRENTDKINSLDYSSDGS 234
+VS+V + A S I+ ++ +V+++ ++ F + IN+L S DG+
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 203
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL 294
L+ S D +I++++ + T++++ L + A +T + + SL
Sbjct: 204 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI----KVFSL 259
Query: 295 HDNKYV-----RYFPGHVRKVS----SLNLSPVDDSFISGSYDKTVRVWDLRQPN 340
D +Y+ F G+ + SL S + +G D +RVW + N
Sbjct: 260 -DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 111/275 (40%), Gaps = 34/275 (12%)
Query: 236 LISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH 295
+I+ +DD I +YD ++ GV +K+ H I S D T+R +
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG---GILVSGSTDRTVRVWDIK 191
Query: 296 DNKYVRYFPGHVRKVSSLNLSPVDD--SFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPI 353
F GH V L++ + ++GS D T+ VW L + ++V + P+
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 354 AAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVS 413
+ PE + +GV +G AS + S G +++
Sbjct: 252 VFHTPEENPYFVGVL-------------RGHMASVRT------------VSGHGNIVVSG 286
Query: 414 TNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGY 473
+ + + ++D C+ LSG + S + + + + S S D + IW+ E G
Sbjct: 287 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTI---YDHERKRCISASMDTTIRIWDLENGE 343
Query: 474 KVCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFW 508
+ L G H + V L+ + K+ + A+A ++ W
Sbjct: 344 LMYTLQG-HTALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 83/209 (39%), Gaps = 27/209 (12%)
Query: 171 PHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAK-----VFRENTDKIN 225
P+FV + ++ V T++ + ++ +N + + VA+ + +TD+I
Sbjct: 260 PYFVGVLRGHMASVRTVSG-----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY 314
Query: 226 SLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKV 285
S Y + IS S D I I+D E G T+ V L++ + S
Sbjct: 315 STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL----SDKFLVSAAA 370
Query: 286 DATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLR-------- 337
D ++R N Y R F H +S++ V D+ + + +++LR
Sbjct: 371 DGSIR--GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHAN 428
Query: 338 ---QPNNVGMIQLSGNKPIAAYDPEGLAF 363
+ + + G +AA + +G +F
Sbjct: 429 ILKDADQIWSVNFKGKTLVAAVEKDGQSF 457
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 279 IHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQ 338
I S D TL + K + GH ++ S IS S D T+R+WDL
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE- 340
Query: 339 PNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSD-SIKLYDVRSYDK 382
N M L G+ + F + +D SI+ +D Y +
Sbjct: 341 -NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR 384
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 12/183 (6%)
Query: 286 DATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI 345
D + LH+ VR F GH S +++S +G D TVR WDLR+ +
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
Query: 346 QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSP 405
+ Y P G A+G+ S ++++ V DK ++ C + LKF+
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLS-LKFAY 275
Query: 406 DGKLILVSTNGSIIRLFDA-FNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQV 464
GK + + +++ + + + QS ++S L + D +++ +GS D +
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISVDDKYIVTGSGDKKA 330
Query: 465 HIW 467
++
Sbjct: 331 TVY 333
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 48/224 (21%)
Query: 303 FPGHVRKVSSLNL----------SPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKP 352
P H R++++LN +P + G V+VWD+ P N P
Sbjct: 38 IPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK--GCVKVWDISHPGN--------KSP 87
Query: 353 IAAYD--------------PEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCP---GERG 395
++ D P+G +G + ++ ++D+ + P K
Sbjct: 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA----PTPRIKAELTSSAPA 143
Query: 396 CEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFV 455
C L SPD K+ + I ++D N V+ G + AS ++ + D +
Sbjct: 144 C--YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCID--ISNDGTKL 198
Query: 456 ASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLA 499
+G D V W+ G + + D S + SL + P LA
Sbjct: 199 WTGGLDNTVRSWDLREGRQ--LQQHDFTSQIFSLGYCPTGEWLA 240
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 112/282 (39%), Gaps = 69/282 (24%)
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKF----------THSKTTAIHASTK 284
LL+S S D +I + K T + +K+GV + F T + A S
Sbjct: 32 LLLSASRDKTLISW-------KLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84
Query: 285 VDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGM 344
D TLR + + + F GH V S+++ ISGS DKT++VW ++
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK------- 137
Query: 345 IQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFS 404
+ LA +G N D + V P E+ +
Sbjct: 138 -------------GQCLATLLGHN-DWVSQVRV------------VPNEKADD------- 164
Query: 405 PDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQV 464
D I+ + N ++ A+N N Q + + +N++ T +PD +AS DG++
Sbjct: 165 -DSVTIISAGNDKXVK---AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 465 HIWN---AERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS 503
+WN + Y + D V SL F+P + LA+A +
Sbjct: 221 XLWNLAAKKAXYTLSAQD-----EVFSLAFSPNRYWLAAATA 257
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 19/175 (10%)
Query: 180 FVSRVLTMAASLAHSRSSRTITKCSENLVRSY-----RVAKVFRENTDKINSLDYSSDGS 234
+VS+V + A S I+ ++ V+++ ++ F + IN+L S DG+
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL 294
L+ S D +I +++ + T++++ L + A +T + + SL
Sbjct: 210 LIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGI----KVFSL 265
Query: 295 HDNKYV-----RYFPGHVRKVS----SLNLSPVDDSFISGSYDKTVRVWDLRQPN 340
D +Y+ F G+ + SL S + +G D +RVW + N
Sbjct: 266 -DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 22/209 (10%)
Query: 301 RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ---LSGNKPI--AA 355
R GH VS + LS + +S S+D ++R+W+L+ G Q L K + A
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQN----GQCQYKFLGHTKDVLSVA 116
Query: 356 YDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTG-LKFSP--DGKLILV 412
+ P+ G +++++++V KG G +W ++FSP D +I+
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNV----KGECMHTLSRGAH-TDWVSCVRFSPSLDAPVIVS 171
Query: 413 STNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472
++++++D G V L G N S T +PD AS DG +W+ +G
Sbjct: 172 GGWDNLVKVWDLATGRLVTDLKGHTNYVTS---VTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 473 YKVCVLDGDHPSAVQSLQFNPKYHMLASA 501
+ + P + + F+P + + +A
Sbjct: 229 EALSEMAAGAP--INQICFSPNRYWMCAA 255
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 89/215 (41%), Gaps = 16/215 (7%)
Query: 217 FRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKY--GVDLIKFTHS 274
F +T + S+ +S D ++S D+ + +++ +G +T++ + V ++F+ S
Sbjct: 105 FLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPS 163
Query: 275 KTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW 334
+ S D ++ L + V GH V+S+ +SP S D R+W
Sbjct: 164 LDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Query: 335 DLRQPNNVGMIQLSGNKPI--AAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPG 392
DL + + +++ PI + P + I+++D+ + D P
Sbjct: 224 DLTKGE--ALSEMAAGAPINQICFSPNRY-WMCAATEKGIRIFDLENKD---IIVELAPE 277
Query: 393 ERGC-----EWTGLKFSPDGKLILVSTNGSIIRLF 422
+G E + +S DG + ++IR++
Sbjct: 278 HQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 17/269 (6%)
Query: 218 RENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTT 277
+ + D++ +S+D + +CS D ++ I++ G +T + V+ FT+S
Sbjct: 660 KAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHH 719
Query: 278 AIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLR 337
+ A+ D L+ L+ + GH V+ SP D S S D T+++WD
Sbjct: 720 LLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT 779
Query: 338 QPN---NVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGER 394
N ++ + Q N D E + ++D ++ V + +K G
Sbjct: 780 SANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIM-VAAKNKIFLFDIHTSGLL 838
Query: 395 GCEWTG-------LKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEAT 447
G TG FSP L +V+ + + L++ + + V G L+ +
Sbjct: 839 GEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVM--- 895
Query: 448 FTPDSQFVASGSTDGQVHIWNAERGYKVC 476
F+PD + S D + +W + KVC
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWETK---KVC 921
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 116/294 (39%), Gaps = 27/294 (9%)
Query: 216 VFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSK 275
V R +TD + +S DG + SC D + ++ E G + + K + +++ S
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETG--EKLLEIKAHEDEVLCCAFST 673
Query: 276 TTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFI--SGSYDKTVRV 333
A+ VD ++ + + V + H +V+ + + + +GS D +++
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 334 WDLRQPN-NVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYD-------KGPF 385
WDL Q M + + + P+ A ++KL+D S + K F
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Query: 386 ASFKCPGE------RGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNN 439
+ + P E + C W S DG I+V+ I LFD + + +
Sbjct: 794 LNLEDPQEDMEVIVKCCSW-----SADGARIMVAAKNKIF-LFDIHTSGLLGEIHT--GH 845
Query: 440 NASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNP 493
+++ F+P + + V +WN + KV G H S V + F+P
Sbjct: 846 HSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRG-HLSWVHGVMFSP 898
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 19/182 (10%)
Query: 305 GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFA 364
GH+ V + SP SF++ S D+T+R+W+ ++ + L + + E + A
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 365 IGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDA 424
+ D I+ + + G + + C SP + I I + +
Sbjct: 946 V----DHIRRLQLINGRTGQI-DYLTEAQVSC----CCLSPHLQYIAFGDENGAIEILEL 996
Query: 425 FNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE-------RGYKVCV 477
N QS + + FT D + + S S D ++ +WN + RG++ V
Sbjct: 997 VNNRIFQSR---FQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETV 1053
Query: 478 LD 479
D
Sbjct: 1054 KD 1055
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 24/233 (10%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKF 271
R+ + ++ + + +++D LIS SDD +I +++ + ++ D
Sbjct: 1000 RIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLL 1059
Query: 272 THSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTV 331
+S+ S D T++ ++ + F H V S ++S F S S DKT
Sbjct: 1060 KNSRLL----SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTA 1115
Query: 332 RVW--DLRQPNNVGMIQLSGNK---PIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFA 386
++W DL P + +L G+ +A+ + A G ++ I++++V + G
Sbjct: 1116 KIWSFDLLLP----LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSN---GELL 1168
Query: 387 SFKCP-GERGCE----W-TGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSL 433
P E G W T L FSPDGK+++ + G I+ ++ G Q+
Sbjct: 1169 HLCAPLSEEGAATHGGWVTDLCFSPDGKMLI--SAGGYIKWWNVVTGESSQTF 1219
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 97/247 (39%), Gaps = 60/247 (24%)
Query: 269 IKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYD 328
I+FT + T I +S DA ++ + +K + + GH V L + +S S+D
Sbjct: 1015 IQFTADEKTLISSSD--DAEIQVWNWQLDKCI-FLRGHQETVKDFRLLK-NSRLLSWSFD 1070
Query: 329 KTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASF 388
TV+VW++ ++GNK +G + ++ D+ K + S DK
Sbjct: 1071 GTVKVWNI----------ITGNKEKDFVCHQGTVLSCDISHDATK-FSSTSADK------ 1113
Query: 389 KCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATF 448
T +S D L L G NG CV+ + F
Sbjct: 1114 ----------TAKIWSFDLLLPLHELRGH--------NG-CVRC-------------SAF 1141
Query: 449 TPDSQFVASGSTDGQVHIWNAERG--YKVCVLDGD-----HPSAVQSLQFNPKYHMLASA 501
+ DS +A+G +G++ IWN G +C + H V L F+P ML SA
Sbjct: 1142 SVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
Query: 502 CSNMAFW 508
+ +W
Sbjct: 1202 GGYIKWW 1208
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 403 FSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDG 462
FS DG+ I +++F A G + L + + L F+ D +F+A+ S D
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETG---EKLLEIKAHEDEVLCCAFSTDDRFIATCSVDK 685
Query: 463 QVHIWNAERGYKVCVLDGDHPSAVQSLQF-NPKYHMLASACSNMAF 507
+V IWN+ G V D +H V F N +H+L + S+ F
Sbjct: 686 KVKIWNSMTGELVHTYD-EHSEQVNCCHFTNSSHHLLLATGSSDCF 730
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 110/275 (40%), Gaps = 34/275 (12%)
Query: 236 LISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH 295
+I+ +DD I +YD ++ GV +K+ H I S D T+R +
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG---GILVSGSTDRTVRVWDIK 191
Query: 296 DNKYVRYFPGHVRKVSSLNLSPVDD--SFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPI 353
F GH V L++ + ++GS D T+ VW L + ++V + P+
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 354 AAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVS 413
+ PE + +GV +G AS + S G +++
Sbjct: 252 VFHTPEENPYFVGVL-------------RGHXASVRT------------VSGHGNIVVSG 286
Query: 414 TNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGY 473
+ + + ++D C+ LSG + S + + + + S S D + IW+ E G
Sbjct: 287 SYDNTLIVWDVAQXKCLYILSGHTDRIYSTI---YDHERKRCISASXDTTIRIWDLENGE 343
Query: 474 KVCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFW 508
L G H + V L+ + K+ + A+A ++ W
Sbjct: 344 LXYTLQG-HTALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 27/209 (12%)
Query: 171 PHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAK-----VFRENTDKIN 225
P+FV + + V T++ + ++ +N + + VA+ + +TD+I
Sbjct: 260 PYFVGVLRGHXASVRTVSG-----HGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIY 314
Query: 226 SLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKV 285
S Y + IS S D I I+D E G T+ V L++ + S
Sbjct: 315 STIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL----SDKFLVSAAA 370
Query: 286 DATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLR-------- 337
D ++R N Y R F H +S++ V D+ + + +++LR
Sbjct: 371 DGSIR--GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHAN 428
Query: 338 ---QPNNVGMIQLSGNKPIAAYDPEGLAF 363
+ + + G +AA + +G +F
Sbjct: 429 ILKDADQIWSVNFKGKTLVAAVEKDGQSF 457
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Query: 279 IHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQ 338
I S D TL + K + GH ++ S IS S D T+R+WDL
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE- 340
Query: 339 PNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSD-SIKLYDVRSYDK 382
N L G+ + F + +D SI+ +D Y +
Sbjct: 341 -NGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR 384
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 121/302 (40%), Gaps = 61/302 (20%)
Query: 217 FRENTDKINSLDYSSDGS-LLISCSDDDQIIIY-----DCEQGTSKNTINSKKYGVDLIK 270
R +TD + ++ D + +++S S D II++ D G ++ + + V+ +
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT 330
+ A+ S D LR L R F GH + V S+ S + +S S D+T
Sbjct: 438 LSSDGQFALSGSW--DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 331 VRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKC 390
+++W N +G + + + EG
Sbjct: 496 IKLW-----NTLGECKYTIS--------EG------------------------------ 512
Query: 391 PGERGCEWTG-LKFSPD--GKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEAT 447
GE +W ++FSP+ I+ ++ +++++ N +L+G +
Sbjct: 513 -GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG---HTGYVSTVA 568
Query: 448 FTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNP-KYHMLASACSNMA 506
+PD ASG DG V +W+ G K+ L+ + S + +L F+P +Y + A+ +
Sbjct: 569 VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNRYWLCAATEHGIK 626
Query: 507 FW 508
W
Sbjct: 627 IW 628
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 107/264 (40%), Gaps = 31/264 (11%)
Query: 230 SSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATL 289
SSDG +S S D ++ ++D G S V + F+ + AS D T+
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR--DRTI 496
Query: 290 R-YLSLHDNKYV--RYFPGHVRKVSSLNLSP--VDDSFISGSYDKTVRVWDLRQPN-NVG 343
+ + +L + KY GH VS + SP + + +S S+DKTV+VW+L
Sbjct: 497 KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST 556
Query: 344 MIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKF 403
+ +G A P+G A G + L+D+ K S E L F
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK--LYSL----EANSVIHALCF 610
Query: 404 SPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLN------NNASPLEA----------T 447
SP+ + +T I +++D + + V+ L L +N+ P
Sbjct: 611 SPNRYWLCAATEHGI-KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669
Query: 448 FTPDSQFVASGSTDGQVHIWNAER 471
++ D + SG TDG + +W R
Sbjct: 670 WSADGSTLFSGYTDGVIRVWGIGR 693
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 10/169 (5%)
Query: 217 FRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYG----VDLIKFT 272
F +T + S+ +S D ++S S D I +++ G K TI+ G V ++F+
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFS 526
Query: 273 HSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVR 332
+ S D T++ +L + K GH VS++ +SP SG D V
Sbjct: 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586
Query: 333 VWDLRQPNNVGMIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLYDVRS 379
+WDL + + L N I A + P + IK++D+ S
Sbjct: 587 LWDLAEGKK--LYSLEANSVIHALCFSPNRY-WLCAATEHGIKIWDLES 632
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Query: 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINS-KKYGVDLI 269
+ + +++ S+ ++ G+LL +CS D + +++ ++ ++ + D+
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 270 KFTHSKTTAIHASTKVDATLRYLSLHDNKYV--RYFPGHVRKVSSLNLSPVDDSFISGSY 327
+ + AS D T++ ++ +V GH V SL P S S
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214
Query: 328 DKTVRVWDLRQPNNVGMIQLSGNKP 352
D+TVR+W P N + SG+ P
Sbjct: 215 DRTVRIWRQYLPGNEQGVACSGSDP 239
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 88/226 (38%), Gaps = 31/226 (13%)
Query: 305 GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNK---PIAAYDPEGL 361
GH R V + SP + S S+D T +W Q + + L G++ A+ P G
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 362 AFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLK---FSPDGKLILVSTNGSI 418
A S+ +++V D+ ++C +K + P +L+ ++
Sbjct: 119 LLATCSRDKSVWVWEVDEEDE-----YECVSVLNSHTQDVKHVVWHPSQELLASASYDDT 173
Query: 419 IRLFDAFNGN--CVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNA-----ER 471
++L+ + C +L G + ++ F P Q +AS S D V IW E+
Sbjct: 174 VKLYREEEDDWVCCATLEG---HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230
Query: 472 GYK----------VCVLDGDHPSAVQSLQFNPKYHMLASACSNMAF 507
G +C L G H + + + LA+AC + A
Sbjct: 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 9/173 (5%)
Query: 303 FP-GHVRKVSSLNLSPVD-DSFISGSYDKTVRVWDLRQPNNVGMIQLS--GNKPIAAYDP 358
FP GH V SL+++ ++ + FISGS D TVR+WDLR + G+ + P
Sbjct: 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259
Query: 359 EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEW---TGLKFSPDGKLILVSTN 415
+G F G + + +L+D+R+ + + + P E T + FS G+L+ +
Sbjct: 260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE-PDRNDNELPIVTSVAFSISGRLLFAGYS 318
Query: 416 GSIIRLFDAFNGNCVQSLSGVLNNNASPLEA-TFTPDSQFVASGSTDGQVHIW 467
++D V +L + N++ + + D + +GS D + IW
Sbjct: 319 NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 213 VAKVFRENTDKINSLDYSSDG-SLLISCSDDDQIIIYDCEQGTSKNTINSK---KYGVDL 268
V++V + +S Y D + LI+ S D +++D G + S+ + D+
Sbjct: 149 VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208
Query: 269 IKFT-HSKTTAIHASTKVDATLRYLSLH-DNKYVRYFPGHVRKVSSLNLSPVDDSFISGS 326
+ + +S + S D T+R L ++ VR + GH ++S+ P F +GS
Sbjct: 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS 268
Query: 327 YDKTVRVWDLR 337
D T R++D+R
Sbjct: 269 DDGTCRLFDMR 279
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 9/201 (4%)
Query: 301 RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPI-AAYDPE 359
R GH KV SL+ +P + +S S D + VW+ I+L + A+ P
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 360 GLAFAIGVNSDSIKLYDVRSY---DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG 416
G + A G + ++++ S D S G +G + ++ PD + L++ +G
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA-SSCQYVPDQETRLITGSG 178
Query: 417 -SIIRLFDAFNGNCVQSLSGVL--NNNASPLEATFTP-DSQFVASGSTDGQVHIWNAERG 472
L+D G + + A L + ++ SGS D V +W+
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 473 YKVCVLDGDHPSAVQSLQFNP 493
+ H + S++F P
Sbjct: 239 SRAVRTYHGHEGDINSVKFFP 259
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 429 CVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQS 488
C ++L G ++ +TP+ ++ S S DG++ +WNA K + H V
Sbjct: 58 CCRTLQG---HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK-LHCPWVME 113
Query: 489 LQFNPKYHMLA-----SACS 503
F P +A SACS
Sbjct: 114 CAFAPNGQSVACGGLDSACS 133
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 101/252 (40%), Gaps = 66/252 (26%)
Query: 286 DATLRYLSLHDNKYVRYF-------PGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQ 338
D T+ L++ + YF GH VS L LS + IS S+DKT+R+WDLR
Sbjct: 48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR- 106
Query: 339 PNNVGMIQLSGNKP---IAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERG 395
+ G++ A+ P+ IKL+++ K F+S E
Sbjct: 107 -TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK--FSS--AEKENH 161
Query: 396 CEWTG-LKFSP--------------------DGKLILVSTNGSIIRLFDAFNGNCVQSLS 434
+W +++SP DG+L + +TN I F A N V LS
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESN-VNHLS 220
Query: 435 GVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHP-------SAVQ 487
+P+ +++A+G D ++ IW+ +L+ +P S +
Sbjct: 221 -------------ISPNGKYIATGGKDKKLLIWD--------ILNLTYPQREFDAGSTIN 259
Query: 488 SLQFNPKYHMLA 499
+ FNPK +A
Sbjct: 260 QIAFNPKLQWVA 271
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 31/205 (15%)
Query: 316 SPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYD--------PEGLAFAIGV 367
SPV ISGS DKTV +W L + G + +K + ++ + FAI
Sbjct: 39 SPV---LISGSRDKTVMIWKLYEEEQNGYFGIP-HKALTGHNHFVSDLALSQENCFAISS 94
Query: 368 NSD-SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFN 426
+ D +++L+D+R+ ++K E + FSPD + IL + I+L++
Sbjct: 95 SWDKTLRLWDLRTG-----TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL- 148
Query: 427 GNCVQSLSGVLNNN-------ASPLEAT---FTPDSQFVASGSTDGQVHIWNAERGYKVC 476
G C S + N++ SP+ + P + + AS DG++ +WN +++
Sbjct: 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIR 206
Query: 477 VLDGDHPSAVQSLQFNPKYHMLASA 501
H S V L +P +A+
Sbjct: 207 YTFKAHESNVNHLSISPNGKYIATG 231
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 20/193 (10%)
Query: 296 DNKYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLRQPNNVG--MIQLSGNKP 352
D K + H +KV+ + L+P D F+ + S D+TV++WDLRQ + L P
Sbjct: 240 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 299
Query: 353 I--AAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLK--FSPDGK 408
+ A + P+G I++Y +D P P T +K + P
Sbjct: 300 VNAACFSPDGARLLTTDQKSEIRVYSASQWD-CPLGLIPHPHRHFQHLTPIKAAWHPRYN 358
Query: 409 LILV---------STNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEA--TFTPDSQFVAS 457
LI+V S +R D F+GN + + + + +S + + F P +AS
Sbjct: 359 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 418
Query: 458 GSTDGQVHIWNAE 470
+ + IW+ E
Sbjct: 419 -AMGYHILIWSQE 430
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 126/280 (45%), Gaps = 39/280 (13%)
Query: 219 ENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKK----YGVDLIKFTHS 274
E + + L Y D ++S D+ I I+D KNT+ K+ + ++ +
Sbjct: 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWD------KNTLECKRILTGHTGSVLCLQYD 182
Query: 275 KTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW 334
+ I S+ D+T+R ++ + + H V L+L + ++ S D+++ VW
Sbjct: 183 ERVIITGSS--DSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVW 238
Query: 335 DLRQPNNVGMIQ-LSGNKP---IAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKC 390
D+ P ++ + + L G++ + +D + + A G +IK+++ + + F
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCE---FVRTLN 293
Query: 391 PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTP 450
+RG L++ +L++ ++ + IRL+D G C++ L G L
Sbjct: 294 GHKRGI--ACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG-----HEELVRCIRF 344
Query: 451 DSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQ 490
D++ + SG+ DG++ +W+ V LD P+ L+
Sbjct: 345 DNKRIVSGAYDGKIKVWDL-----VAALDPRAPAGTLCLR 379
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 49/212 (23%)
Query: 301 RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLR------------------QPNNV 342
R GH V L L + I+GS D TVRVWD+ + NN
Sbjct: 167 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 224
Query: 343 GMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLK 402
M+ S ++ IA +D +A + +R G A+ +
Sbjct: 225 MMVTCSKDRSIAVWD---MASPTDIT--------LRRVLVGHRAAVNV----------VD 263
Query: 403 FSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDG 462
F D K I+ ++ I++++ V++L+G A + V SGS+D
Sbjct: 264 F--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-----LQYRDRLVVSGSSDN 316
Query: 463 QVHIWNAERGYKVCVLDGDHPSAVQSLQFNPK 494
+ +W+ E G + VL+G H V+ ++F+ K
Sbjct: 317 TIRLWDIECGACLRVLEG-HEELVRCIRFDNK 347
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 82/194 (42%), Gaps = 19/194 (9%)
Query: 319 DDSFISGSYDKTVRVWDLRQPNNVGMIQL----SGNKPIAAYDPEGLAFAIGVNSDSIKL 374
D +SG D T+++WD N + ++ +G+ YD G + ++++
Sbjct: 143 DQKIVSGLRDNTIKIWD---KNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRV 197
Query: 375 YDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLS 434
+DV + + C L+F+ +G ++ S + SI ++D + +
Sbjct: 198 WDVNTGEMLNTLIHHCEAV-----LHLRFN-NGMMVTCSKDRSIA-VWDMASPTDITLRR 250
Query: 435 GVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPK 494
++ + A+ F D +++ S S D + +WN V L+G H + LQ+ +
Sbjct: 251 VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG-HKRGIACLQYRDR 307
Query: 495 YHMLASACSNMAFW 508
+ S+ + + W
Sbjct: 308 LVVSGSSDNTIRLW 321
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 138/334 (41%), Gaps = 43/334 (12%)
Query: 216 VFRENTDKINSLDYSS-DGSLLISCSDDDQIIIYDCEQGTSKNTINSK------------ 262
V R + IN+LD +G ++S D I++YD E + ++ K
Sbjct: 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97
Query: 263 -KYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDS 321
+Y V+ +++ + T + S+ D TL+ + + F V S ++SPV
Sbjct: 98 HRYSVETVQW-YPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTK 155
Query: 322 F---ISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIA-AYDPEGLAFAIGVNSDS-IKLYD 376
G+ V++ DL+ + ++Q + +A ++ P ++DS +KL+D
Sbjct: 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
Query: 377 VRSYD-----------KGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAF 425
VR K A + GL F+ DG +L + +RL+++
Sbjct: 216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
Query: 426 NG-NCVQSLSGVLNNNASPLEATF----TPDSQFVASGSTDGQVHIWNAERGYKVCVLDG 480
NG N + + V NN+ L+ T + + FV GST + ++ G ++ +L G
Sbjct: 276 NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST---IAVYTVYSGEQITMLKG 332
Query: 481 DHPSAVQSLQFNPKYHMLASACS--NMAFWIPTL 512
H V F + L S N+ W+P+L
Sbjct: 333 -HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 200 ITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTI 259
IT N +S V + K+N L ++SDG L++ D+++ +++ G +NT+
Sbjct: 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG--ENTL 281
Query: 260 -------NSKKYGVDLIKFTHS-KTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVS 311
N+ K G +KFT S ++ +T+ +++ + + GH + V
Sbjct: 282 VNYGKVCNNSKKG---LKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVD 338
Query: 312 SLNLSPVDDSFISGSYDKTVRVW 334
SGS D + W
Sbjct: 339 CCVFQSNFQELYSGSRDCNILAW 361
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 20/193 (10%)
Query: 296 DNKYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLRQPNNVG--MIQLSGNKP 352
D K + H +KV+ + L+P D F+ + S D+TV++WDLRQ + L P
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 298
Query: 353 I--AAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLK--FSPDGK 408
+ A + P+G I++Y +D P P T +K + P
Sbjct: 299 VNAACFSPDGARLLTTDQKSEIRVYSASQWD-CPLGLIPHPHRHFQHLTPIKAAWHPRYN 357
Query: 409 LILV---------STNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEA--TFTPDSQFVAS 457
LI+V S +R D F+GN + + + + +S + + F P +AS
Sbjct: 358 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 417
Query: 458 GSTDGQVHIWNAE 470
+ + IW+ +
Sbjct: 418 -AMGYHILIWSEQ 429
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 20/193 (10%)
Query: 296 DNKYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLRQPNNVG--MIQLSGNKP 352
D K + H +KV+ + L+P D F+ + S D+TV++WDLRQ + L P
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 298
Query: 353 I--AAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLK--FSPDGK 408
+ A + P+G I++Y +D P P T +K + P
Sbjct: 299 VNAACFSPDGARLLTTDQKSEIRVYSASQWD-CPLGLIPHPHRHFQHLTPIKAAWHPRYN 357
Query: 409 LILV---------STNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEA--TFTPDSQFVAS 457
LI+V S +R D F+GN + + + + +S + + F P +AS
Sbjct: 358 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 417
Query: 458 GSTDGQVHIWNAE 470
+ + IW+ +
Sbjct: 418 -AMGYHILIWSQQ 429
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 141/368 (38%), Gaps = 94/368 (25%)
Query: 194 SRSSRTITKCSENLVR-----SYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIY 248
SR R I+ +N V ++ F E+T ++S+ Y+ DGSL S D I++Y
Sbjct: 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Query: 249 DCEQGTS---------KNTINSKKY--------GVDLIKFTHSKTTAIH--ASTKVDATL 289
+ GT KN +S G + + KT I A+ KV+ T+
Sbjct: 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
Query: 290 ------------------RYLSLHDNKY-------------VRYFPGHVRKVSSLNLSPV 318
+S+ N + VRY GH + +++L+ S
Sbjct: 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY--GHNKAITALSSSAD 335
Query: 319 DDSFISGSYDKTVRVWDL------RQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSI 372
+ S + + WD+ R +V ++G K + +G F + + D +
Sbjct: 336 GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS----KGDLFTVSWD-DHL 390
Query: 373 KLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDG--------KLILVSTNGSIIRLFDA 424
K+ V + G +S + + GL S DG K I + ++G + + +
Sbjct: 391 KV--VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448
Query: 425 FNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPS 484
+N +CV L+N D QFVA G D +VH++ V HP+
Sbjct: 449 YNSSCV-----ALSN-----------DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 492
Query: 485 AVQSLQFN 492
+ S+ F+
Sbjct: 493 EITSVAFS 500
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 448 FTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGD------HPSAVQSLQFNPKYHMLASA 501
+ PD AS DG + ++N G K V + D H +V L ++P +ASA
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257
Query: 502 CSN 504
++
Sbjct: 258 SAD 260
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 306 HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI 345
H KV+ ++ SP + +GS D +V VW++ +P++ +I
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 574
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 216 VFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDC-EQGTSKNTINS-KKYGVDLIKFTH 273
+ + +++ + +S+DG L +CS D + I++ E G I+ +++ D+
Sbjct: 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161
Query: 274 SKTTAIHASTKVDATLRYLSLHDNKY--VRYFPGHVRKVSSLNLSPVDDSF--ISGSYDK 329
+ A+ AS+ D T+R +D+ + V GH V S + + F SGS D
Sbjct: 162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS 221
Query: 330 TVRVW 334
TVRVW
Sbjct: 222 TVRVW 226
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 23/116 (19%)
Query: 404 SPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNA---SPLEATFTPDSQFVASGST 460
S D K+ LVS +D F +L VL+ A + + P + +A+GS
Sbjct: 31 STDRKIKLVSVK------YDDF------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78
Query: 461 DGQVHIW----NAERGYK---VCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFWI 509
D V IW +A+R ++ + +++G H + V+ + ++ + LA+ + + WI
Sbjct: 79 DSTVSIWAKEESADRTFEMDLLAIIEG-HENEVKGVAWSNDGYYLATCSRDKSVWI 133
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 366 GVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAF 425
G S +I +DVR + + + C GL + DG + N ++++++DA
Sbjct: 192 GSRSGAIHHHDVRIANH-QIGTLQGHSSEVC---GLAWRSDGLQLASGGNDNVVQIWDAR 247
Query: 426 NGNCVQSLSGVLNNNASPLEATFTP-DSQFVASG--STDGQVHIWNAERGYKVCVLDGDH 482
+ + + N+NA+ + P S +A+G + D Q+H WNA G +V +D
Sbjct: 248 S--SIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG- 303
Query: 483 PSAVQSLQFNPKYHMLASAC----SNMAFW 508
S V SL ++P + S +N++ W
Sbjct: 304 -SQVTSLIWSPHSKEIMSTHGFPDNNLSIW 332
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 106/276 (38%), Gaps = 46/276 (16%)
Query: 224 INSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTH------SKTT 277
+ S+ +S DGS L + + IYD E T T+ + V + + S++
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSG 196
Query: 278 AIHASTKVDATLRYLSLHD----NKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRV 333
AIH HD N + GH +V L SG D V++
Sbjct: 197 AIHH-------------HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI 243
Query: 334 WDLRQ--PNNVGMIQLSGNKPIA--AYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFK 389
WD R P + K +A + LA G I ++ + +
Sbjct: 244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT------GARV 297
Query: 390 CPGERGCEWTGLKFSPDGKLILVSTNG---SIIRLFDAFNGNCVQSLSGVLNNNASPLEA 446
+ G + T L +SP K I+ ST+G + + ++ +++ + + + ++ L +
Sbjct: 298 NTVDAGSQVTSLIWSPHSKEIM-STHGFPDNNLSIW-SYSSSGLTKQVDIPAHDTRVLYS 355
Query: 447 TFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDH 482
+PD + +++ ++D + W V DGDH
Sbjct: 356 ALSPDGRILSTAASDENLKFWR--------VYDGDH 383
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 90/225 (40%), Gaps = 33/225 (14%)
Query: 300 VRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN-VGMIQLSGNKPIA-AYD 357
+R GH +V L+ + SGS + D+R N+ +G +Q ++ A+
Sbjct: 169 LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226
Query: 358 PEGLAFAIGVNSDSIKLYDVRS---------YDKGPFASFKCPGERGCEWTGLKFSPDGK 408
+GL A G N + ++++D RS ++ A CP + TG
Sbjct: 227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286
Query: 409 LILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVAS--GSTDGQVHI 466
+ G+ + DA G+ V SL ++P S+ + S G D + I
Sbjct: 287 HFWNAATGARVNTVDA--GSQVTSL-------------IWSPHSKEIMSTHGFPDNNLSI 331
Query: 467 WN-AERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS--NMAFW 508
W+ + G V H + V +P +L++A S N+ FW
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
Query: 297 NKYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWD---------LRQPNNVGMIQ 346
+K V GH V + P +D+ I SGS D TV VW+ LR+P +I
Sbjct: 71 DKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP----VIT 126
Query: 347 LSGNKP---IAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWT--GL 401
L G+ I A+ P + D++ L +D G A+ G T +
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILV----WDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 402 KFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASG--- 458
+S DG LI S +R+ + G V + P+ A F + + + +G
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAE-KDRPHEGTRPVHAVFVSEGKILTTGFSR 241
Query: 459 STDGQVHIWNAE 470
++ QV +W+ +
Sbjct: 242 MSERQVALWDTK 253
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
Query: 297 NKYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWD---------LRQPNNVGMIQ 346
+K V GH V + P +D+ I SGS D TV VW+ LR+P +I
Sbjct: 71 DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP----VIT 126
Query: 347 LSGNKP---IAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWT--GL 401
L G+ I A+ P + D++ L +D G A+ G T +
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV----WDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 402 KFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASG--- 458
+S DG LI S +R+ + G V + P+ A F + + + +G
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAE-KDRPHEGTRPVHAVFVSEGKILTTGFSR 241
Query: 459 STDGQVHIWNAE 470
++ QV +W+ +
Sbjct: 242 MSERQVALWDTK 253
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 32/188 (17%)
Query: 306 HVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLR--QPNNVGMIQLSGNKPI--AAYDP-E 359
H KV+ +P D + + S D TV++WDLR + N + ++ KP+ A ++P +
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 360 GLAFAIGVNSDSIKLYDVRSYDK------GPFASFKCPGERGCEWTGL------KFSPDG 407
+ I++Y + K P F+ W + PD
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD 321
Query: 408 KLILVSTNGSIIRLFDAFNGNCVQSL-----SGVLNNNASPLEATFTPDSQFVASGSTDG 462
+L+L + I ++DA +G V L +G+++ N F+P +ASG
Sbjct: 322 QLLL--NDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK------FSPTGDVLASG-MGF 372
Query: 463 QVHIWNAE 470
+ IWN E
Sbjct: 373 NILIWNRE 380
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 282 STKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW 334
S +D TL + L ++ ++ GH + +++L ++P+ ISGSYD + W
Sbjct: 314 SLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL----ISGSYDGRIMEW 362
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 32/188 (17%)
Query: 306 HVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLR--QPNNVGMIQLSGNKPI--AAYDP-E 359
H KV+ +P D + + S D TV++WDLR + N + ++ KP+ A ++P +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 360 GLAFAIGVNSDSIKLYDVRSYDK------GPFASFKCPGERGCEWTGL------KFSPDG 407
+ I++Y + K P F+ W + PD
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD 322
Query: 408 KLILVSTNGSIIRLFDAFNGNCVQSL-----SGVLNNNASPLEATFTPDSQFVASGSTDG 462
+L+L + I ++DA +G V L +G+++ N F+P +ASG
Sbjct: 323 QLLL--NDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK------FSPTGDVLASG-MGF 373
Query: 463 QVHIWNAE 470
+ IWN E
Sbjct: 374 NILIWNRE 381
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 282 STKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW 334
S +D TL + L ++ ++ GH + +++L ++P+ ISGSYD + W
Sbjct: 314 SLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL----ISGSYDGRIXEW 362
>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|A Chain A, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|A Chain A, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|A Chain A, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2H6G|A Chain A, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
pdb|2H6H|A Chain A, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
pdb|2H6I|A Chain A, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
pdb|2IEJ|A Chain A, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
Length = 382
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 23 SLALSMSALTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCP 74
L + L ++++LK + NNSV N+ SN+T ND +VLE E L +KL P
Sbjct: 212 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 271
Query: 75 GNSLA 79
N A
Sbjct: 272 HNESA 276
>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|3E37|A Chain A, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 379
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 23 SLALSMSALTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCP 74
L + L ++++LK + NNSV N+ SN+T ND +VLE E L +KL P
Sbjct: 212 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 271
Query: 75 GNSLA 79
N A
Sbjct: 272 HNESA 276
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 321 SFISGSYDKTVRVWDLRQPN----NVGMIQLSGNKPIA------AYDPEGLAFAIGVNSD 370
++GS D TV+VWD RQ + N+ +Q + AY+ E G ++
Sbjct: 131 EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG 190
Query: 371 SIKLYDVRS 379
IKL+D+R+
Sbjct: 191 DIKLFDLRN 199
>pdb|1FWX|A Chain A, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|B Chain B, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|C Chain C, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|D Chain D, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
Length = 595
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 268 LIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFI---S 324
++K+ +A KVD L +H Y PGH++ V L +D +
Sbjct: 354 VVKWNIEDAIRAYAGEKVDPIKDKLDVH------YQPGHLKTVMGETLDATNDWLVCLSK 407
Query: 325 GSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFA 364
S D+ + V L+ P N +I +SG+K + +D G FA
Sbjct: 408 FSKDRFLNVGPLK-PENDQLIDISGDKMVLVHD--GPTFA 444
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 100/259 (38%), Gaps = 28/259 (10%)
Query: 222 DKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHA 281
+ I+S+ + +G+ L + ++ ++D +Q + S V + + + I +
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN----SYILS 123
Query: 282 STKVDATLRYLSLHD----NKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLR 337
S + + HD +V GH ++V L +P SG D V VW
Sbjct: 124 SGSRSGHIHH---HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP-S 179
Query: 338 QPNNVGMI------QLSGNKPIAAYDPEG---LAFAIGVNSDSIKLYDVRSYDKGPFASF 388
P G + Q G A+ P LA G + I++++V S G S
Sbjct: 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSA 236
Query: 389 KCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATF 448
+ C + +SP K L+S +G + + ++ + + + L T
Sbjct: 237 VDAHSQVCS---ILWSPHYKE-LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM 292
Query: 449 TPDSQFVASGSTDGQVHIW 467
+PD VAS + D + +W
Sbjct: 293 SPDGATVASAAADETLRLW 311
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 15/172 (8%)
Query: 328 DKTVRVWDLRQPNNVGMIQLSGNKPI---AAYDPEGLAFAIGVNSDSIKLYDVRSYDKGP 384
D +V +W + + ++Q+ A+ EG A+G +S ++L+DV+ +
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 385 FASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPL 444
+ W S S +G I + V +LSG ++
Sbjct: 104 NMTSHSARVGSLSWNSYILSSG------SRSGHIHHHDVRVAEHHVATLSG---HSQEVC 154
Query: 445 EATFTPDSQFVASGSTDGQVHIWNA---ERGYKVCVLDGDHPSAVQSLQFNP 493
+ PD + +ASG D V++W + E G+ H AV+++ + P
Sbjct: 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 234 SLLISCSDDDQIIIYDCEQGTS---KNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLR 290
SL S +DD +++I+D T+ + +++ V+ + F + I A+ D T+
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 291 YLSLHDNKY-VRYFPGHVRKVSSLNLSPVDDSFISGS-YDKTVRVWDLRQ 338
L + K + F H ++ ++ SP +++ ++ S D+ + VWDL +
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 236 LISCSDDDQIIIYDCEQGTSKNTINSKKY-------GVDLIKFTHSKTTAIHASTKVDAT 288
L+S SDD + ++D G + I K V+ + + H ++ S D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW-HLLHESLFGSVADDQK 253
Query: 289 LRYLSLHDN---KYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLR 337
L N K H +V+ L+ +P + + +GS DKTV +WDLR
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 100/259 (38%), Gaps = 28/259 (10%)
Query: 222 DKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHA 281
+ I+S+ + +G+ L + ++ ++D +Q + S V + + + I +
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN----SYILS 203
Query: 282 STKVDATLRYLSLHD----NKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLR 337
S + + HD +V GH ++V L +P SG D V VW
Sbjct: 204 SGSRSGHIHH---HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP-S 259
Query: 338 QPNNVGMI------QLSGNKPIAAYDPEG---LAFAIGVNSDSIKLYDVRSYDKGPFASF 388
P G + Q G A+ P LA G + I++++V S G S
Sbjct: 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSA 316
Query: 389 KCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATF 448
+ C + +SP K L+S +G + + ++ + + + L T
Sbjct: 317 VDAHSQVCS---ILWSPHYKE-LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM 372
Query: 449 TPDSQFVASGSTDGQVHIW 467
+PD VAS + D + +W
Sbjct: 373 SPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 99/255 (38%), Gaps = 20/255 (7%)
Query: 222 DKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHA 281
+ I+S+ + +G+ L + ++ ++D +Q + S V + + ++
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSR 218
Query: 282 STKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN 341
S + ++ H +V GH ++V L +P SG D V VW P
Sbjct: 219 SGHIHHHDVRVAEH---HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP-SAPGE 274
Query: 342 VGMI------QLSGNKPIAAYDPEG---LAFAIGVNSDSIKLYDVRSYDKGPFASFKCPG 392
G + Q G A+ P LA G + I++++V S G S
Sbjct: 275 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSAVDAH 331
Query: 393 ERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDS 452
+ C + +SP K L+S +G + + ++ + + + L T +PD
Sbjct: 332 SQVCS---ILWSPHYKE-LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 387
Query: 453 QFVASGSTDGQVHIW 467
VAS + D + +W
Sbjct: 388 ATVASAAADETLRLW 402
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 23/173 (13%)
Query: 305 GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFA 364
GH V SL+ D ISGS+DKT +VW ++ + V +Q + +D + ++F+
Sbjct: 102 GHQGNVCSLSFQ--DGVVISGSWDKTAKVW--KEGSLVYNLQA---HNASVWDAKVVSFS 154
Query: 365 ----IGVNSD-SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSII 419
+ ++D +IKL+ K F+ R L DG I S +G +I
Sbjct: 155 ENKFLTASADKTIKLWQNDKVIK-TFSGIHNDVVR-----HLAVVDDGHFISCSNDG-LI 207
Query: 420 RLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472
+L D G+ +++ G + + P+ V+ G D V IW+ E G
Sbjct: 208 KLVDXHTGDVLRTYEG---HESFVYCIKLLPNGDIVSCGE-DRTVRIWSKENG 256
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 286 DATLRYLSLHDNKYVRYFPGHVRKVSSLNL--SPVDDSFISGSYDKTVRVWDLRQPNNVG 343
D T + L N+ ++ H V +++ +P ++GS+DKT++ WD R N +
Sbjct: 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM 165
Query: 344 MIQL 347
++QL
Sbjct: 166 VLQL 169
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
pdb|1N94|A Chain A, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|A Chain A, Farnesyl Transferase Structure Of Jansen Compound
Length = 315
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 29 SALTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCPGNSLA 79
+ L ++++LK + NNSV N+ SN+T +D +VLE E L +KL P N A
Sbjct: 164 NELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESA 222
>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|A Chain A, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|A Chain A, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 315
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 29 SALTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCPGNSLA 79
+ L ++++LK + NNSV N+ SN+T +D +VLE E L +KL P N A
Sbjct: 164 NELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESA 222
>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
Length = 312
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 29 SALTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCPGNSLA 79
+ L ++++LK + NNSV N+ SN+T +D +VLE E L +KL P N A
Sbjct: 164 NELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESA 222
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 31 LTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCPGNSLA 79
L ++++LK + NNSV N+ SN+T +D +VLE E L +KL P N A
Sbjct: 176 LQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESA 232
>pdb|3ZWU|A Chain A, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|3ZWU|B Chain B, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|4A9V|A Chain A, Pseudomonas Fluorescens Phox
pdb|4A9X|A Chain A, Pseudomonas Fluorescens Phox In Complex With The Substrate
Analogue Appcp
Length = 592
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 25/90 (27%)
Query: 326 SYDKTVRVWDLRQPN--NVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKG 383
+DK R+W L + N G GN + DP A G ++R + G
Sbjct: 482 GFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADP-----ATG---------EIRRFMVG 527
Query: 384 PFASFKCPGERGCEWTGLKFSPDGKLILVS 413
P GCE TG+ FSPD K + V
Sbjct: 528 PI---------GCEVTGISFSPDQKTLFVG 548
>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 315
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 29 SALTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCPGNSLA 79
+ L ++++LK + NNSV N+ SN+T +D +VLE E L +KL P N A
Sbjct: 165 NELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESA 223
>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|2ZIR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
pdb|3KSL|A Chain A, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|A Chain A, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 377
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 31 LTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCPGNSLA 79
L ++++LK + NNSV N+ SN+T +D +VLE E L +KL P N A
Sbjct: 220 LQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESA 276
>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp
pdb|1O1S|A Chain A, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|A Chain A, Structure Of Fpt Bound To The Cvim-Fpp Product
Length = 380
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 31 LTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCPGNSLA 79
L ++++LK + NNSV N+ SN+T +D +VLE E L +KL P N A
Sbjct: 223 LQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESA 279
>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1N4P|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1SA5|A Chain A, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1S64|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TN7|A Chain A, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|A Chain A, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|1TNB|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|3DPY|A Chain A, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3EU5|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|3EUV|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
pdb|4GTM|A Chain A, Ftase In Complex With Bms Analogue 11
pdb|4GTO|A Chain A, Ftase In Complex With Bms Analogue 14
pdb|4GTP|A Chain A, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|A Chain A, Ftase In Complex With Bms Analogue 12
pdb|4GTR|A Chain A, Ftase In Complex With Bms Analogue 13
Length = 377
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 31 LTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCPGNSLA 79
L ++++LK + NNSV N+ SN+T +D +VLE E L +KL P N A
Sbjct: 220 LQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESA 276
>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736
Length = 313
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 29 SALTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCPGNSLA 79
+ L ++++LK + NNSV N+ SN+T +D +VLE E L +KL P N A
Sbjct: 165 NELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESA 223
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 48/157 (30%)
Query: 224 INSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHAST 283
I+ L+++ LL+S SDD + I+ G S+N
Sbjct: 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC------------------------- 284
Query: 284 KVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVG 343
F GH + + S + DD IS S D +VR+W L+Q N +
Sbjct: 285 -------------------FYGHSQSIVSASWVG-DDKVISCSMDGSVRLWSLKQ-NTLL 323
Query: 344 MIQLSGNKPIAA--YDPEGLAFAIGVNSDSIKLYDVR 378
+ + PI A +G +A+ + +YD++
Sbjct: 324 ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 401 LKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGST 460
L+F+ KL+L +++ +R++ NGN G ++ S + A++ D + V S S
Sbjct: 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG---HSQSIVSASWVGDDK-VISCSM 308
Query: 461 DGQVHIWNAERG--YKVCVLDG 480
DG V +W+ ++ + ++DG
Sbjct: 309 DGSVRLWSLKQNTLLALSIVDG 330
>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 379
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 31 LTCINEILKGPIENNSVLNK-----SNST--NDFSVLE-ETAKRLMCLKLCPGNSLA 79
L ++++LK + NNSV N+ SN+T +D +VLE E L +KL P N A
Sbjct: 222 LQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESA 278
>pdb|3PNO|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNQ|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
Length = 357
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 273 HSKTTAIHASTKVDATLRYLSLHDNKY-----VRYFPGHVRK-VSSLNLSPVDDSF---- 322
HS A+ A T A +L DN+ + PG R+ SSL+ + VD+ F
Sbjct: 186 HSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQT-VDEMFDTLL 244
Query: 323 ISGSYDKTVRVWDLRQ 338
++GSY +T+R WD +Q
Sbjct: 245 VNGSYHRTLRFWDYQQ 260
>pdb|3PNM|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
Length = 357
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 273 HSKTTAIHASTKVDATLRYLSLHDNKY-----VRYFPGHVRK-VSSLNLSPVDDSF---- 322
HS A+ A T A +L DN+ + PG R+ SSL+ + VD+ F
Sbjct: 186 HSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQT-VDEMFDTLL 244
Query: 323 ISGSYDKTVRVWDLRQ 338
++GSY +T+R WD +Q
Sbjct: 245 VNGSYHRTLRFWDYQQ 260
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 236 LISCSDDDQIIIYDCEQGTSKNTINSKKY-------GVDLIKFTHSKTTAIHASTKVDAT 288
L+S SDD + ++D G + I K V+ + + H ++ S D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW-HLLHESLFGSVADDQK 253
Query: 289 LRYLSLHDN---KYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLR 337
L N K H +V+ L+ +P + + +GS DKTV +WDLR
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 236 LISCSDDDQIIIYDCEQGT-------SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDAT 288
L+S SDD I ++D +KN V+ + + H ++ S D
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQK 257
Query: 289 LRYLSLHDN---KYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLR 337
L +N K H +V+ L+ +P + + +GS DKTV +WDLR
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
>pdb|3PNK|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNK|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNL|A Chain A, Crystal Structure Of E.coli Dha Kinase Dhak-dhal Complex
Length = 357
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 273 HSKTTAIHASTKVDATLRYLSLHDNKY-----VRYFPGHVRK-VSSLNLSPVDDSF---- 322
HS A+ A T A +L DN+ + PG R+ SSL+ + VD+ F
Sbjct: 186 HSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQT-VDEMFDTLL 244
Query: 323 ISGSYDKTVRVWDLRQ 338
++GSY +T+R WD +Q
Sbjct: 245 VNGSYHRTLRFWDYQQ 260
>pdb|1OI2|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI2|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1UOD|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
pdb|1UOD|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
Length = 366
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 273 HSKTTAIHASTKVDATLRYLSLHDNKY-----VRYFPGHVRK-VSSLNLSPVDDSF---- 322
HS A+ A T A +L DN+ + PG R+ SSL+ + VD+ F
Sbjct: 195 HSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQT-VDEMFDTLL 253
Query: 323 ISGSYDKTVRVWDLRQ 338
++GSY +T+R WD +Q
Sbjct: 254 VNGSYHRTLRFWDYQQ 269
>pdb|4DPP|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana
pdb|4DPP|B Chain B, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana
pdb|4DPQ|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana In Complex With (S)-Lysine
pdb|4DPQ|B Chain B, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana In Complex With (S)-Lysine
Length = 360
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Query: 230 SSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTT--AIHASTKVDA 287
++G ++ + + Q++ +D +T+N + +I T S +T AIHA+ + A
Sbjct: 93 GAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFA 152
Query: 288 TLRYLSLHDNKY-----VRYFPGHVRKVSSLNLSPVDDSFISGSYDKTV---RVWDLRQ- 338
+ +LH N Y + H + V L++ P + G + + ++ L Q
Sbjct: 153 VGMHAALHINPYYGKTSIEGLIAHFQSV--LHMGPTIIYNVPGRTGQDIPPRAIFKLSQN 210
Query: 339 PNNVGMIQLSGNKPIAAYDPEGLA 362
PN G+ + GNK + Y G+
Sbjct: 211 PNLAGVKECVGNKRVEEYTENGVV 234
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 236 LISCSDDDQIIIYDCEQGT-------SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDAT 288
L+S SDD I ++D +KN V+ + + H ++ S D
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQK 255
Query: 289 LRYLSLHDN---KYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLR 337
L +N K H +V+ L+ +P + + +GS DKTV +WDLR
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
>pdb|1UOE|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
pdb|1UOE|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
Length = 366
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 273 HSKTTAIHASTKVDATLRYLSLHDNKY-----VRYFPGHVRKVSSLNLSPVDDSF----I 323
HS A+ A T A +L DN+ + PG R+ S + VD+ F +
Sbjct: 195 HSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDNTVDEMFDTLLV 254
Query: 324 SGSYDKTVRVWDLRQ 338
+GSY +T+R WD +Q
Sbjct: 255 NGSYHRTLRFWDYQQ 269
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 236 LISCSDDDQIIIYDCEQGT-------SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDAT 288
L+S SDD I ++D +KN V+ + + H ++ S D
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQK 259
Query: 289 LRYLSLHDN---KYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLR 337
L +N K H +V+ L+ +P + + +GS DKTV +WDLR
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
>pdb|2IWF|A Chain A, Resting Form Of Pink Nitrous Oxide Reductase From
Achromobacter Cycloclastes
pdb|2IWF|B Chain B, Resting Form Of Pink Nitrous Oxide Reductase From
Achromobacter Cycloclastes
pdb|2IWK|A Chain A, Inhibitor-Bound Form Of Nitrous Oxide Reductase From
Achromobacter Cycloclastes At 1.7 Angstrom Resolution
pdb|2IWK|B Chain B, Inhibitor-Bound Form Of Nitrous Oxide Reductase From
Achromobacter Cycloclastes At 1.7 Angstrom Resolution
Length = 642
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 294 LHDNKYVRYFPGHVRKVSSLNLSPVDDSFI---SGSYDKTVRVWDLRQPNNVGMIQLSGN 350
+ D V+Y PGH++ V L +D + S D+ + V L+ P N +I +SG+
Sbjct: 421 IKDKLDVQYQPGHLKTVMGETLDAANDWLVCLCKFSKDRFLNVGPLK-PENDQLIDISGD 479
Query: 351 KPIAAYDPEGLAFA 364
K + +D G FA
Sbjct: 480 KMVLVHD--GPTFA 491
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 286 DATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDS-FISGSYDKTVRVWDLRQPNNVGM 344
D +++ L ++ + H +V+ + P D+ F+S D + +WD R+P
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219
Query: 345 IQLSGNKPI---AAYDPE-GLAFAIGVNSDSIKLYDVRSYD 381
I + I + PE FA G + ++ L ++++ D
Sbjct: 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD 260
>pdb|1GOA|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 156
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 445 EATFTPDSQFVASGSTDGQVHIWNAERGYK 474
E + DSQ+V G T G +H W +RG+K
Sbjct: 64 EVILSTDSQYVRQGITQGWIHNWK-KRGWK 92
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 397 EWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVA 456
E T LKF P G+ ++ S+ ++++ +G+ ++L G + A+ + + V
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG---HRATVTDIAIIDRGRNVL 194
Query: 457 SGSTDGQVHIWNAERGYKV 475
S S DG + +W G +
Sbjct: 195 SASLDGTIRLWECGTGTTI 213
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 282 STKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWD 335
S+ D L+ S+ D R GH V+ + + + +S S D T+R+W+
Sbjct: 153 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 306 HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN 341
HV +++ L P ++ IS S D +++W ++ +N
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 397 EWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVA 456
E T LKF P G+ ++ S+ ++++ +G+ ++L G + A+ + + V
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG---HRATVTDIAIIDRGRNVL 197
Query: 457 SGSTDGQVHIWNAERGYKV 475
S S DG + +W G +
Sbjct: 198 SASLDGTIRLWECGTGTTI 216
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 306 HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN 341
HV +++ L P ++ IS S D +++W ++ +N
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 282 STKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWD 335
S+ D L+ S+ D R GH V+ + + + +S S D T+R+W+
Sbjct: 156 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 305 GHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLR 337
H +V+ L+ +P + + +GS DKTV +WDLR
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 224 INSLDYSSDGSLLISCSDDDQ-IIIYDCEQGTSKNTINSKK 263
I +L +SD S LI+C+D D+ ++++D ++ TSKN + +K
Sbjct: 105 IRNLRLTSDESRLIACADSDKSLLVFDVDK-TSKNVLKLRK 144
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249
+V +VFR+NTD + L +GS DDQ+ D
Sbjct: 288 KVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFID 325
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 454 FVASGSTDGQVHIWNAERG-YKVCVLDGDHPSAVQSLQFNP 493
+AS S DG+V IW E G + + H ++V S+Q+ P
Sbjct: 69 ILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 30/173 (17%)
Query: 297 NKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAY 356
+K+ +Y H VS++++ +SGS D ++VWDL Q + LS + AA
Sbjct: 119 SKFCKY--EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-----QVVLSSYRAHAAQ 171
Query: 357 ------DPEGLAFAIGVNSDS-IKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSP---- 405
P + + + D+ I L+D R PG T L + P
Sbjct: 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP---TSLAWHPQQSE 228
Query: 406 -------DGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPD 451
+G + LV T + L A + CV L V + ++ P A+ + D
Sbjct: 229 VFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL--VFSPHSVPFLASLSED 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,537,102
Number of Sequences: 62578
Number of extensions: 592038
Number of successful extensions: 2529
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1719
Number of HSP's gapped (non-prelim): 354
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)