Query psy6127
Match_columns 515
No_of_seqs 1019 out of 2852
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 18:19:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 7.8E-48 2.7E-52 407.4 41.9 308 193-511 164-610 (611)
2 1nr0_A Actin interacting prote 100.0 2.7E-46 9.2E-51 395.5 45.5 361 133-513 31-568 (611)
3 1vyh_C Platelet-activating fac 100.0 2.2E-46 7.4E-51 376.9 40.7 287 214-511 101-410 (410)
4 2ynn_A Coatomer subunit beta'; 100.0 1.5E-45 5E-50 355.6 43.7 292 212-513 4-303 (304)
5 3ow8_A WD repeat-containing pr 100.0 1.4E-45 4.8E-50 358.3 42.8 290 211-511 22-320 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 3.2E-45 1.1E-49 359.0 44.7 289 211-509 45-340 (340)
7 2ymu_A WD-40 repeat protein; u 100.0 8.5E-45 2.9E-49 381.5 43.6 341 133-509 234-577 (577)
8 4ery_A WD repeat-containing pr 100.0 1.1E-43 3.9E-48 343.4 46.4 295 210-511 12-311 (312)
9 2pbi_B Guanine nucleotide-bind 100.0 5.6E-44 1.9E-48 352.1 43.5 289 212-509 55-354 (354)
10 3iz6_a 40S ribosomal protein R 100.0 1.1E-44 3.6E-49 360.9 34.9 300 208-513 53-376 (380)
11 3frx_A Guanine nucleotide-bind 100.0 3.7E-43 1.3E-47 341.1 42.3 292 209-512 5-317 (319)
12 3ow8_A WD repeat-containing pr 100.0 3.3E-43 1.1E-47 341.7 39.8 298 162-470 22-320 (321)
13 2ymu_A WD-40 repeat protein; u 100.0 6.8E-43 2.3E-47 367.0 44.3 343 133-511 193-538 (577)
14 4g56_B MGC81050 protein; prote 100.0 1.4E-43 4.7E-48 349.6 34.1 304 193-513 20-344 (357)
15 1erj_A Transcriptional repress 100.0 2.3E-42 7.9E-47 345.6 42.7 285 219-512 62-389 (393)
16 1vyh_C Platelet-activating fac 100.0 2.1E-43 7.1E-48 355.1 34.8 290 164-470 100-410 (410)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-42 8E-47 339.3 41.3 297 210-513 4-336 (345)
18 2xzm_R RACK1; ribosome, transl 100.0 5.6E-42 1.9E-46 336.4 39.2 291 210-513 10-341 (343)
19 4gqb_B Methylosome protein 50; 100.0 3.4E-42 1.2E-46 337.4 37.0 284 218-513 27-332 (344)
20 1got_B GT-beta; complex (GTP-b 100.0 1E-41 3.5E-46 334.0 39.6 291 162-468 45-340 (340)
21 2hes_X YDR267CP; beta-propelle 100.0 2.6E-41 9E-46 329.7 41.4 293 210-512 3-328 (330)
22 1r5m_A SIR4-interacting protei 100.0 5.3E-41 1.8E-45 337.9 37.6 337 155-511 28-424 (425)
23 2ynn_A Coatomer subunit beta'; 100.0 5.6E-41 1.9E-45 323.5 36.1 290 164-471 5-302 (304)
24 1pgu_A Actin interacting prote 100.0 1.6E-40 5.4E-45 351.2 43.0 354 133-512 31-614 (615)
25 4aow_A Guanine nucleotide-bind 100.0 6.4E-40 2.2E-44 320.3 43.9 295 208-514 25-339 (340)
26 3frx_A Guanine nucleotide-bind 100.0 1.9E-40 6.4E-45 322.1 39.4 297 162-472 7-318 (319)
27 2oaj_A Protein SNI1; WD40 repe 100.0 7.8E-41 2.7E-45 367.0 41.0 352 132-510 29-659 (902)
28 2pbi_B Guanine nucleotide-bind 100.0 1.7E-40 6E-45 327.1 37.3 291 163-468 55-354 (354)
29 3iz6_a 40S ribosomal protein R 100.0 2.5E-41 8.6E-46 336.5 29.0 309 155-473 49-377 (380)
30 2hes_X YDR267CP; beta-propelle 100.0 1E-39 3.5E-44 318.4 39.5 301 161-471 3-328 (330)
31 3zwl_B Eukaryotic translation 100.0 2.5E-39 8.5E-44 319.3 42.5 287 214-512 25-346 (369)
32 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.7E-39 5.7E-44 318.9 40.4 309 162-479 5-343 (345)
33 1gxr_A ESG1, transducin-like e 100.0 2.6E-39 8.9E-44 315.2 40.4 279 217-510 47-335 (337)
34 3vl1_A 26S proteasome regulato 100.0 6.1E-40 2.1E-44 330.5 36.7 317 176-512 62-419 (420)
35 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-40 4.8E-45 380.0 35.9 353 133-513 670-1159(1249)
36 4gqb_B Methylosome protein 50; 100.0 8.3E-40 2.8E-44 320.4 36.2 298 155-474 17-334 (344)
37 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.5E-39 2.5E-43 325.5 43.1 330 157-514 103-444 (445)
38 1sq9_A Antiviral protein SKI8; 100.0 1.2E-39 4E-44 325.8 35.6 292 211-513 6-396 (397)
39 2xzm_R RACK1; ribosome, transl 100.0 2.5E-39 8.6E-44 317.4 37.1 300 163-473 12-342 (343)
40 3dm0_A Maltose-binding peripla 100.0 6.9E-39 2.4E-43 344.1 43.3 288 212-511 373-692 (694)
41 4ery_A WD repeat-containing pr 100.0 8.5E-39 2.9E-43 309.2 39.1 291 163-470 14-311 (312)
42 2pm9_A Protein WEB1, protein t 100.0 2.7E-40 9.2E-45 332.4 27.5 306 196-513 42-415 (416)
43 3ei3_B DNA damage-binding prot 100.0 8.5E-39 2.9E-43 318.4 38.1 297 208-512 60-382 (383)
44 3v7d_B Cell division control p 100.0 3.6E-38 1.2E-42 322.1 42.3 323 164-511 113-462 (464)
45 4g56_B MGC81050 protein; prote 100.0 3.1E-39 1.1E-43 318.5 33.1 296 155-473 29-345 (357)
46 3sfz_A APAF-1, apoptotic pepti 100.0 5.8E-39 2E-43 366.7 40.0 357 133-513 628-1075(1249)
47 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-39 7.3E-44 355.6 34.0 363 133-513 111-733 (902)
48 3odt_A Protein DOA1; ubiquitin 100.0 6.3E-38 2.2E-42 302.3 39.1 286 209-513 6-297 (313)
49 4e54_B DNA damage-binding prot 100.0 3.3E-39 1.1E-43 327.2 30.8 299 211-513 109-431 (435)
50 1k8k_C P40, ARP2/3 complex 41 100.0 5.2E-38 1.8E-42 310.7 37.6 289 217-511 4-360 (372)
51 1gxr_A ESG1, transducin-like e 100.0 1.2E-37 4E-42 303.5 39.2 295 155-469 34-335 (337)
52 1r5m_A SIR4-interacting protei 100.0 3.8E-38 1.3E-42 317.0 36.3 300 196-511 22-360 (425)
53 3k26_A Polycomb protein EED; W 100.0 2.1E-38 7.2E-43 312.5 33.6 288 216-511 13-365 (366)
54 1erj_A Transcriptional repress 100.0 5.8E-38 2E-42 313.6 36.4 289 170-472 62-390 (393)
55 3i2n_A WD repeat-containing pr 100.0 1.8E-38 6E-43 312.1 31.3 290 215-513 12-354 (357)
56 3mkq_A Coatomer beta'-subunit; 100.0 3.3E-37 1.1E-41 337.0 41.2 291 212-512 4-302 (814)
57 3dw8_B Serine/threonine-protei 100.0 3E-37 1E-41 313.4 37.7 289 219-512 26-446 (447)
58 3vl1_A 26S proteasome regulato 100.0 1.2E-37 4E-42 313.8 34.0 314 133-471 69-419 (420)
59 4h5i_A Guanine nucleotide-exch 100.0 6.7E-38 2.3E-42 309.8 31.2 287 221-513 14-344 (365)
60 4aow_A Guanine nucleotide-bind 100.0 1.2E-36 4E-41 297.1 39.5 302 157-473 23-339 (340)
61 3dwl_C Actin-related protein 2 100.0 1.7E-38 5.7E-43 315.4 25.3 288 216-510 6-377 (377)
62 4a11_B DNA excision repair pro 100.0 1.2E-36 4.1E-41 304.5 38.1 307 201-513 25-366 (408)
63 2j04_B YDR362CP, TAU91; beta p 100.0 7.4E-39 2.5E-43 329.6 22.5 306 193-513 177-518 (524)
64 3gre_A Serine/threonine-protei 100.0 7.5E-38 2.6E-42 317.2 29.6 295 203-509 47-437 (437)
65 1yfq_A Cell cycle arrest prote 100.0 3.5E-37 1.2E-41 301.2 33.3 281 213-505 3-314 (342)
66 1sq9_A Antiviral protein SKI8; 100.0 1.6E-37 5.4E-42 310.3 31.4 292 165-473 9-397 (397)
67 2pm7_B Protein transport prote 100.0 1.3E-36 4.3E-41 292.0 36.3 253 215-470 3-284 (297)
68 3mkq_A Coatomer beta'-subunit; 100.0 4.7E-37 1.6E-41 335.8 37.5 331 164-512 5-386 (814)
69 3v7d_B Cell division control p 100.0 3.2E-36 1.1E-40 307.6 40.2 284 213-513 113-422 (464)
70 3i2n_A WD repeat-containing pr 100.0 6.9E-37 2.3E-41 300.7 33.0 296 168-474 14-356 (357)
71 3dm0_A Maltose-binding peripla 100.0 2.8E-36 9.6E-41 323.8 39.8 292 166-470 376-692 (694)
72 2pm9_A Protein WEB1, protein t 100.0 8.5E-38 2.9E-42 314.2 26.2 281 221-513 12-338 (416)
73 3mmy_A MRNA export factor; mRN 100.0 2.2E-36 7.6E-41 298.0 35.6 288 208-504 26-336 (368)
74 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.9E-36 1.3E-40 305.5 37.0 306 133-471 130-442 (445)
75 1pgu_A Actin interacting prote 100.0 6E-36 2.1E-40 316.1 39.7 298 198-511 38-365 (615)
76 3ei3_B DNA damage-binding prot 100.0 2.5E-36 8.5E-41 300.5 34.6 303 155-471 56-382 (383)
77 4gga_A P55CDC, cell division c 100.0 1.8E-35 6.3E-40 298.2 41.2 278 223-512 107-395 (420)
78 4aez_A CDC20, WD repeat-contai 100.0 6E-36 2.1E-40 299.9 36.6 281 217-513 87-381 (401)
79 4a11_B DNA excision repair pro 100.0 3.3E-36 1.1E-40 301.3 33.5 341 155-512 26-405 (408)
80 3zwl_B Eukaryotic translation 100.0 1.1E-35 3.6E-40 293.2 36.7 290 165-473 25-348 (369)
81 3k26_A Polycomb protein EED; W 100.0 8E-37 2.7E-41 301.1 28.2 295 169-471 15-366 (366)
82 4ggc_A P55CDC, cell division c 100.0 1.3E-34 4.3E-39 279.9 41.1 277 224-512 28-315 (318)
83 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-35 4.8E-40 285.8 34.2 291 162-479 8-304 (313)
84 3bg1_A Protein SEC13 homolog; 100.0 2.8E-36 9.6E-41 292.2 28.8 248 216-470 8-292 (316)
85 4aez_A CDC20, WD repeat-contai 100.0 4.5E-35 1.5E-39 293.6 36.2 284 194-490 108-399 (401)
86 3f3f_A Nucleoporin SEH1; struc 100.0 2E-35 6.9E-40 288.3 32.3 291 215-514 5-339 (351)
87 3jrp_A Fusion protein of prote 100.0 3.8E-35 1.3E-39 290.6 34.5 257 212-471 2-287 (379)
88 1k8k_C P40, ARP2/3 complex 41 100.0 4.8E-35 1.6E-39 289.4 33.3 288 171-473 7-363 (372)
89 2pm7_B Protein transport prote 100.0 1.4E-34 4.7E-39 277.7 35.4 249 257-513 3-286 (297)
90 1p22_A F-BOX/WD-repeat protein 100.0 7.1E-35 2.4E-39 295.3 35.1 275 214-513 126-415 (435)
91 4e54_B DNA damage-binding prot 100.0 1.4E-35 4.7E-40 300.6 26.9 300 166-475 113-434 (435)
92 4h5i_A Guanine nucleotide-exch 100.0 5.3E-35 1.8E-39 289.0 29.2 285 174-472 16-344 (365)
93 4gga_A P55CDC, cell division c 100.0 2.5E-34 8.4E-39 290.0 33.8 277 198-490 124-413 (420)
94 2j04_B YDR362CP, TAU91; beta p 100.0 5.1E-36 1.7E-40 308.5 21.3 316 132-471 173-517 (524)
95 3gre_A Serine/threonine-protei 100.0 2.8E-35 9.7E-40 298.3 26.4 299 156-468 47-437 (437)
96 1p22_A F-BOX/WD-repeat protein 100.0 2.1E-34 7.2E-39 291.9 32.0 291 170-493 131-434 (435)
97 3dwl_C Actin-related protein 2 100.0 1.4E-35 4.9E-40 294.2 21.8 284 175-469 14-377 (377)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-34 4.9E-39 289.9 28.0 280 224-512 37-342 (402)
99 2aq5_A Coronin-1A; WD40 repeat 100.0 4.4E-34 1.5E-38 286.4 29.9 277 191-475 49-346 (402)
100 3bg1_A Protein SEC13 homolog; 100.0 2.8E-34 9.7E-39 278.1 27.6 248 258-513 8-294 (316)
101 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2E-33 6.7E-38 286.0 35.0 284 221-513 4-392 (450)
102 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-33 3.7E-38 278.7 31.9 290 208-512 6-336 (355)
103 2j04_A TAU60, YPL007P, hypothe 100.0 3.4E-34 1.2E-38 288.3 27.1 267 218-511 12-296 (588)
104 4ggc_A P55CDC, cell division c 100.0 6.9E-33 2.4E-37 267.7 34.3 261 198-473 44-317 (318)
105 3jrp_A Fusion protein of prote 100.0 2.6E-33 9E-38 277.3 31.7 262 162-432 1-293 (379)
106 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-35 8.5E-40 296.5 16.4 299 133-503 28-350 (588)
107 3dw8_B Serine/threonine-protei 100.0 4.7E-33 1.6E-37 282.4 31.4 281 173-470 29-445 (447)
108 1l0q_A Surface layer protein; 100.0 7.4E-32 2.5E-36 268.8 38.9 277 191-484 4-287 (391)
109 1yfq_A Cell cycle arrest prote 100.0 1.4E-32 4.7E-37 268.5 31.6 283 168-468 7-321 (342)
110 3lrv_A PRE-mRNA-splicing facto 100.0 5.2E-33 1.8E-37 272.5 25.5 261 228-504 43-323 (343)
111 3bws_A Protein LP49; two-domai 100.0 6.5E-32 2.2E-36 273.0 34.2 297 200-511 102-431 (433)
112 3mmy_A MRNA export factor; mRN 100.0 2.5E-32 8.6E-37 268.9 29.7 305 155-475 22-353 (368)
113 3jro_A Fusion protein of prote 100.0 1.3E-32 4.3E-37 297.5 30.0 255 214-471 2-285 (753)
114 3f3f_A Nucleoporin SEH1; struc 100.0 8.8E-32 3E-36 262.5 30.6 294 167-477 6-343 (351)
115 1l0q_A Surface layer protein; 100.0 1.1E-30 3.9E-35 260.2 35.1 335 134-502 4-366 (391)
116 3bws_A Protein LP49; two-domai 100.0 8.6E-31 2.9E-35 264.8 33.2 289 163-471 114-432 (433)
117 2xyi_A Probable histone-bindin 100.0 7.1E-31 2.4E-35 265.5 31.2 248 257-511 122-409 (430)
118 2xyi_A Probable histone-bindin 100.0 4.7E-31 1.6E-35 266.8 29.2 249 215-472 122-411 (430)
119 4gq1_A NUP37; propeller, trans 100.0 5.5E-31 1.9E-35 263.0 26.9 231 279-510 103-387 (393)
120 2w18_A PALB2, fancn, partner a 100.0 4E-31 1.4E-35 250.3 24.2 263 155-469 66-355 (356)
121 3jro_A Fusion protein of prote 100.0 3E-31 1E-35 286.7 26.4 255 166-429 3-288 (753)
122 3vu4_A KMHSV2; beta-propeller 100.0 6.1E-30 2.1E-34 251.8 30.2 290 156-471 3-336 (355)
123 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-29 4.9E-34 257.5 31.9 243 219-470 100-390 (450)
124 4gq1_A NUP37; propeller, trans 100.0 6E-30 2E-34 255.5 24.7 246 217-469 85-387 (393)
125 2w18_A PALB2, fancn, partner a 100.0 1.2E-28 4.2E-33 233.3 31.8 292 211-511 25-356 (356)
126 3lrv_A PRE-mRNA-splicing facto 100.0 8.4E-30 2.9E-34 249.6 24.8 261 191-470 50-332 (343)
127 1nir_A Nitrite reductase; hemo 100.0 4.4E-28 1.5E-32 251.2 35.1 310 193-513 153-515 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.7E-28 9.2E-33 245.1 29.0 278 200-496 94-410 (415)
129 1nir_A Nitrite reductase; hemo 100.0 7.4E-27 2.5E-31 242.0 31.2 325 133-480 150-523 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.8E-27 2.7E-31 234.4 27.8 277 221-511 62-386 (415)
131 3u4y_A Uncharacterized protein 100.0 1.2E-25 4.3E-30 218.3 33.7 279 228-513 4-305 (331)
132 2ecf_A Dipeptidyl peptidase IV 100.0 2.5E-26 8.5E-31 248.4 30.7 282 221-512 36-413 (741)
133 3vgz_A Uncharacterized protein 99.9 9.8E-25 3.4E-29 213.7 35.9 272 220-502 39-332 (353)
134 2ecf_A Dipeptidyl peptidase IV 99.9 4.5E-26 1.6E-30 246.3 28.5 297 200-511 65-458 (741)
135 1k32_A Tricorn protease; prote 99.9 3E-25 1E-29 248.5 33.7 275 216-509 198-499 (1045)
136 1ri6_A Putative isomerase YBHE 99.9 1.3E-24 4.5E-29 211.7 33.2 291 194-496 10-335 (343)
137 2z3z_A Dipeptidyl aminopeptida 99.9 4.3E-25 1.5E-29 237.3 30.3 298 197-512 43-435 (706)
138 1k32_A Tricorn protease; prote 99.9 1.2E-24 4.1E-29 243.7 33.1 332 155-514 227-639 (1045)
139 2ojh_A Uncharacterized protein 99.9 3.7E-25 1.3E-29 210.4 24.8 254 238-504 17-292 (297)
140 1ri6_A Putative isomerase YBHE 99.9 1.9E-24 6.5E-29 210.6 29.3 272 235-511 7-307 (343)
141 1pby_B Quinohemoprotein amine 99.9 3.1E-24 1E-28 208.5 28.6 265 234-513 2-311 (337)
142 3u4y_A Uncharacterized protein 99.9 1E-23 3.5E-28 204.8 32.1 273 193-474 14-307 (331)
143 1xfd_A DIP, dipeptidyl aminope 99.9 6.4E-25 2.2E-29 236.6 24.4 294 196-502 34-428 (723)
144 2ojh_A Uncharacterized protein 99.9 4.1E-24 1.4E-28 203.2 26.3 258 194-462 17-293 (297)
145 1xfd_A DIP, dipeptidyl aminope 99.9 6.7E-25 2.3E-29 236.4 22.5 286 223-513 18-394 (723)
146 1pby_B Quinohemoprotein amine 99.9 4.4E-24 1.5E-28 207.4 26.1 273 193-480 5-319 (337)
147 3scy_A Hypothetical bacterial 99.9 2.3E-22 7.9E-27 197.9 35.7 288 196-492 24-360 (361)
148 3o4h_A Acylamino-acid-releasin 99.9 1.3E-23 4.5E-28 220.6 24.7 261 220-504 20-302 (582)
149 3hfq_A Uncharacterized protein 99.9 2.7E-22 9.1E-27 196.3 32.4 254 218-476 36-324 (347)
150 3vgz_A Uncharacterized protein 99.9 3.1E-22 1.1E-26 195.9 32.2 251 198-462 68-335 (353)
151 2z3z_A Dipeptidyl aminopeptida 99.9 3E-23 1E-27 222.9 27.2 274 224-511 28-388 (706)
152 3hfq_A Uncharacterized protein 99.9 5.7E-22 2E-26 194.0 32.7 268 242-512 15-317 (347)
153 3pe7_A Oligogalacturonate lyas 99.9 9.6E-23 3.3E-27 202.5 27.5 296 209-513 18-383 (388)
154 1jmx_B Amine dehydrogenase; ox 99.9 4.6E-22 1.6E-26 194.2 27.8 243 226-480 4-334 (349)
155 3scy_A Hypothetical bacterial 99.9 1.6E-20 5.4E-25 184.8 33.7 279 230-512 10-337 (361)
156 2oiz_A Aromatic amine dehydrog 99.9 1.2E-20 4.1E-25 185.6 28.3 286 198-496 30-360 (361)
157 1z68_A Fibroblast activation p 99.9 7.8E-22 2.7E-26 212.4 20.6 302 197-512 34-443 (719)
158 3o4h_A Acylamino-acid-releasin 99.9 2.4E-21 8.2E-26 203.4 23.8 267 175-471 26-315 (582)
159 1z68_A Fibroblast activation p 99.9 8.3E-22 2.8E-26 212.2 19.7 281 226-512 20-391 (719)
160 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.7E-19 5.9E-24 177.8 32.7 252 220-472 38-342 (365)
161 3c5m_A Oligogalacturonate lyas 99.9 9.9E-21 3.4E-25 188.2 22.1 275 223-512 37-382 (396)
162 2oit_A Nucleoporin 214KDA; NH2 99.9 1.7E-20 5.9E-25 189.0 21.9 215 287-513 23-279 (434)
163 2oit_A Nucleoporin 214KDA; NH2 99.9 4.6E-20 1.6E-24 185.9 23.8 246 220-469 35-331 (434)
164 4a5s_A Dipeptidyl peptidase 4 99.9 5.5E-20 1.9E-24 198.5 24.8 284 222-512 17-398 (740)
165 3azo_A Aminopeptidase; POP fam 99.9 8E-20 2.7E-24 194.8 25.8 290 215-511 17-366 (662)
166 1jmx_B Amine dehydrogenase; ox 99.9 2.1E-19 7.1E-24 175.3 26.6 231 269-512 5-325 (349)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.7E-19 1.6E-23 174.6 28.7 273 235-512 4-341 (365)
168 3pe7_A Oligogalacturonate lyas 99.8 3.6E-20 1.2E-24 183.9 17.6 300 157-469 15-380 (388)
169 4a5s_A Dipeptidyl peptidase 4 99.8 1.5E-18 5.3E-23 187.1 29.8 302 198-511 35-448 (740)
170 2oiz_A Aromatic amine dehydrog 99.8 6E-18 2E-22 166.3 28.5 274 232-513 14-335 (361)
171 1q7f_A NHL, brain tumor CG1071 99.8 7.9E-17 2.7E-21 152.8 32.6 245 218-472 26-281 (286)
172 2gop_A Trilobed protease; beta 99.8 2.8E-17 9.6E-22 160.4 28.6 258 222-511 15-330 (347)
173 3fvz_A Peptidyl-glycine alpha- 99.8 5.8E-17 2E-21 157.2 28.8 243 221-470 23-321 (329)
174 3azo_A Aminopeptidase; POP fam 99.8 2E-17 7E-22 176.2 25.8 296 168-480 19-378 (662)
175 2dg1_A DRP35, lactonase; beta 99.8 2.8E-17 9.4E-22 159.6 24.4 277 222-512 6-314 (333)
176 1qks_A Cytochrome CD1 nitrite 99.8 3.6E-15 1.2E-19 154.1 38.1 309 193-512 171-538 (567)
177 3c5m_A Oligogalacturonate lyas 99.8 5.4E-18 1.9E-22 168.4 15.2 267 197-475 58-388 (396)
178 3e5z_A Putative gluconolactona 99.8 1E-15 3.5E-20 146.0 29.7 243 253-512 17-284 (296)
179 3fvz_A Peptidyl-glycine alpha- 99.7 7.6E-16 2.6E-20 149.3 27.7 242 263-511 23-321 (329)
180 2gop_A Trilobed protease; beta 99.7 5.4E-16 1.8E-20 151.2 26.4 250 198-480 42-338 (347)
181 1q7f_A NHL, brain tumor CG1071 99.7 3.9E-15 1.3E-19 141.0 30.7 241 261-512 27-280 (286)
182 2dg1_A DRP35, lactonase; beta 99.7 1.2E-14 4E-19 140.9 34.7 247 212-462 35-301 (333)
183 2z2n_A Virginiamycin B lyase; 99.7 9.9E-14 3.4E-18 131.8 40.3 280 217-512 10-295 (299)
184 3dsm_A Uncharacterized protein 99.7 2.7E-15 9.3E-20 145.3 29.6 277 197-491 15-319 (328)
185 2xdw_A Prolyl endopeptidase; a 99.7 8.1E-16 2.8E-20 165.1 27.9 248 219-473 122-416 (710)
186 3e5z_A Putative gluconolactona 99.7 4.5E-15 1.5E-19 141.5 27.7 243 216-474 22-289 (296)
187 3dsm_A Uncharacterized protein 99.7 8.5E-15 2.9E-19 141.8 29.3 255 241-511 15-301 (328)
188 2mad_H Methylamine dehydrogena 99.7 9.4E-14 3.2E-18 136.5 36.8 265 200-478 48-357 (373)
189 2xdw_A Prolyl endopeptidase; a 99.7 1.1E-14 3.7E-19 156.3 32.1 242 262-512 123-414 (710)
190 3sjl_D Methylamine dehydrogena 99.7 8.5E-15 2.9E-19 142.3 26.8 282 199-494 59-384 (386)
191 2bkl_A Prolyl endopeptidase; m 99.7 7.5E-16 2.6E-20 164.9 20.9 248 218-474 117-400 (695)
192 1rwi_B Serine/threonine-protei 99.7 9.6E-15 3.3E-19 136.9 25.7 240 223-473 25-266 (270)
193 1qks_A Cytochrome CD1 nitrite 99.7 1.1E-13 3.9E-18 142.9 35.7 273 230-512 164-477 (567)
194 3no2_A Uncharacterized protein 99.7 4E-14 1.4E-18 133.3 28.4 236 232-480 4-261 (276)
195 2mad_H Methylamine dehydrogena 99.7 4.5E-13 1.5E-17 131.7 36.4 277 228-513 27-351 (373)
196 3sjl_D Methylamine dehydrogena 99.7 8.8E-14 3E-18 135.2 28.2 280 227-513 38-364 (386)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.5E-13 5.1E-18 131.7 29.3 246 219-471 15-299 (314)
198 2qc5_A Streptogramin B lactona 99.6 1.9E-12 6.4E-17 122.9 36.7 275 218-509 16-295 (300)
199 3no2_A Uncharacterized protein 99.6 4.2E-14 1.4E-18 133.1 24.3 211 281-502 9-231 (276)
200 1rwi_B Serine/threonine-protei 99.6 6.1E-14 2.1E-18 131.4 25.3 237 265-512 25-264 (270)
201 2bkl_A Prolyl endopeptidase; m 99.6 1.9E-14 6.4E-19 154.1 24.0 271 230-512 76-397 (695)
202 3c75_H MADH, methylamine dehyd 99.6 1.2E-13 4.1E-18 136.6 27.0 268 199-478 99-409 (426)
203 1yr2_A Prolyl oligopeptidase; 99.6 7E-14 2.4E-18 150.7 24.4 247 219-474 160-444 (741)
204 1yr2_A Prolyl oligopeptidase; 99.6 4.2E-13 1.5E-17 144.6 28.1 273 230-512 115-441 (741)
205 2z2n_A Virginiamycin B lyase; 99.6 3E-11 1E-15 114.5 37.3 261 196-473 33-297 (299)
206 3c75_H MADH, methylamine dehyd 99.6 1E-12 3.4E-17 130.1 26.3 275 231-513 82-403 (426)
207 3g4e_A Regucalcin; six bladed 99.6 6.7E-12 2.3E-16 119.5 30.7 234 218-460 9-261 (297)
208 3g4e_A Regucalcin; six bladed 99.6 9.7E-12 3.3E-16 118.4 31.7 231 261-502 10-260 (297)
209 3hrp_A Uncharacterized protein 99.5 1.9E-12 6.4E-17 129.0 26.6 242 221-469 130-408 (409)
210 2qe8_A Uncharacterized protein 99.5 1.2E-12 4E-17 127.5 23.4 257 222-502 17-309 (343)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.2E-12 1.1E-16 122.4 26.2 241 262-512 16-299 (314)
212 1mda_H Methylamine dehydrogena 99.5 2.3E-13 7.9E-18 132.4 17.4 273 200-493 47-366 (368)
213 3hrp_A Uncharacterized protein 99.5 2.1E-11 7.1E-16 121.5 28.8 238 264-509 131-405 (409)
214 2ghs_A AGR_C_1268P; regucalcin 99.5 1.8E-10 6.2E-15 111.1 34.3 227 223-461 50-292 (326)
215 3dr2_A Exported gluconolactona 99.5 1.6E-11 5.5E-16 117.3 26.4 231 217-462 40-298 (305)
216 3dr2_A Exported gluconolactona 99.5 3.9E-11 1.3E-15 114.6 28.2 233 255-504 36-297 (305)
217 2qc5_A Streptogramin B lactona 99.5 5.7E-10 1.9E-14 105.6 36.2 257 197-470 39-299 (300)
218 2ghs_A AGR_C_1268P; regucalcin 99.5 2.7E-10 9.3E-15 109.9 33.2 223 266-501 51-289 (326)
219 3iuj_A Prolyl endopeptidase; h 99.5 4.7E-12 1.6E-16 135.2 22.6 247 218-475 125-409 (693)
220 1xip_A Nucleoporin NUP159; bet 99.4 2.7E-12 9.3E-17 125.2 17.6 173 309-502 39-232 (388)
221 1xip_A Nucleoporin NUP159; bet 99.4 2.8E-12 9.5E-17 125.1 15.5 176 223-413 39-231 (388)
222 1yiq_A Quinohemoprotein alcoho 99.4 2.9E-11 9.9E-16 128.5 23.9 267 232-502 120-537 (689)
223 1kb0_A Quinohemoprotein alcoho 99.4 5.1E-11 1.7E-15 126.3 24.2 264 232-500 127-537 (677)
224 2ece_A 462AA long hypothetical 99.4 5E-10 1.7E-14 109.5 28.7 231 228-459 88-399 (462)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.5E-09 5.2E-14 106.7 30.5 230 232-480 102-346 (376)
226 1mda_H Methylamine dehydrogena 99.3 5.4E-11 1.8E-15 115.7 18.8 253 244-512 47-346 (368)
227 1npe_A Nidogen, entactin; glyc 99.3 7.4E-09 2.5E-13 96.6 31.8 250 234-496 2-263 (267)
228 2qe8_A Uncharacterized protein 99.3 2.4E-10 8.4E-15 111.0 21.8 234 219-468 64-318 (343)
229 1fwx_A Nitrous oxide reductase 99.3 3.3E-10 1.1E-14 114.6 23.0 257 236-502 18-406 (595)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.3 5.5E-09 1.9E-13 102.7 29.0 265 232-512 52-337 (376)
231 1kb0_A Quinohemoprotein alcoho 99.3 8.5E-10 2.9E-14 116.9 24.5 271 233-513 77-508 (677)
232 3iuj_A Prolyl endopeptidase; h 99.3 5.3E-10 1.8E-14 119.3 23.1 242 174-429 130-408 (693)
233 3hxj_A Pyrrolo-quinoline quino 99.3 2.3E-10 7.7E-15 110.2 18.4 272 212-511 50-323 (330)
234 2ece_A 462AA long hypothetical 99.2 6.4E-09 2.2E-13 101.7 26.1 225 273-502 93-399 (462)
235 1fwx_A Nitrous oxide reductase 99.2 6.5E-10 2.2E-14 112.5 19.7 241 231-473 99-433 (595)
236 1yiq_A Quinohemoprotein alcoho 99.2 3.1E-09 1.1E-13 112.9 24.4 273 233-513 70-506 (689)
237 2hz6_A Endoplasmic reticulum t 99.1 1.8E-11 6.3E-16 120.2 4.8 188 232-434 8-200 (369)
238 3hxj_A Pyrrolo-quinoline quino 99.1 3.8E-09 1.3E-13 101.5 20.5 217 233-471 107-324 (330)
239 2hz6_A Endoplasmic reticulum t 99.1 2.6E-11 8.8E-16 119.1 5.0 203 274-497 8-217 (369)
240 1kv9_A Type II quinohemoprotei 99.1 8.1E-09 2.8E-13 109.3 24.4 266 233-503 117-521 (668)
241 2fp8_A Strictosidine synthase; 99.1 1.3E-07 4.6E-12 90.6 29.7 241 222-471 19-313 (322)
242 2iwa_A Glutamine cyclotransfer 99.1 4.8E-08 1.6E-12 89.9 24.1 210 209-427 7-238 (266)
243 2iwa_A Glutamine cyclotransfer 99.0 2.5E-08 8.5E-13 91.7 20.1 197 298-503 10-225 (266)
244 3nol_A Glutamine cyclotransfer 99.0 3.2E-08 1.1E-12 89.9 20.3 202 298-510 32-252 (262)
245 1npe_A Nidogen, entactin; glyc 99.0 1.2E-06 4.2E-11 81.4 30.3 221 222-453 36-263 (267)
246 3nol_A Glutamine cyclotransfer 99.0 1.2E-07 4E-12 86.2 22.1 200 209-416 29-245 (262)
247 1w6s_A Methanol dehydrogenase 99.0 9.7E-08 3.3E-12 99.0 24.5 270 227-502 111-535 (599)
248 4a2l_A BT_4663, two-component 99.0 3.4E-06 1.2E-10 91.4 37.9 278 224-512 175-480 (795)
249 4a2l_A BT_4663, two-component 99.0 1.3E-05 4.4E-10 86.9 41.4 276 221-511 262-570 (795)
250 2ad6_A Methanol dehydrogenase 99.0 1.8E-07 6E-12 97.0 25.3 260 233-500 115-523 (571)
251 1flg_A Protein (quinoprotein e 98.9 3.3E-07 1.1E-11 95.1 27.4 266 233-502 117-548 (582)
252 3nok_A Glutaminyl cyclase; bet 98.9 1.2E-07 4.1E-12 86.1 20.3 199 208-415 40-254 (268)
253 3mbr_X Glutamine cyclotransfer 98.9 5.1E-07 1.7E-11 81.3 22.8 202 298-510 10-231 (243)
254 3nok_A Glutaminyl cyclase; bet 98.9 1.1E-07 3.6E-12 86.5 18.4 200 298-510 44-262 (268)
255 1kv9_A Type II quinohemoprotei 98.9 1.8E-07 6.2E-12 98.9 22.5 270 233-513 66-489 (668)
256 3mbr_X Glutamine cyclotransfer 98.9 6.3E-07 2.2E-11 80.7 22.5 198 210-415 8-223 (243)
257 3v64_C Agrin; beta propeller, 98.8 7.2E-06 2.5E-10 79.4 30.8 246 221-479 33-283 (349)
258 2ad6_A Methanol dehydrogenase 98.8 8.4E-07 2.9E-11 91.9 25.5 270 233-513 62-495 (571)
259 2p4o_A Hypothetical protein; p 98.8 6.8E-06 2.3E-10 78.0 29.9 241 210-462 21-279 (306)
260 1k3i_A Galactose oxidase precu 98.8 1.9E-07 6.7E-12 98.8 20.6 275 226-503 190-530 (656)
261 1w6s_A Methanol dehydrogenase 98.8 3.6E-06 1.2E-10 87.2 28.1 195 233-434 62-350 (599)
262 2p4o_A Hypothetical protein; p 98.8 1.2E-05 4.2E-10 76.2 29.7 236 254-502 23-276 (306)
263 1ijq_A LDL receptor, low-densi 98.8 3.5E-05 1.2E-09 73.4 32.4 235 235-479 3-246 (316)
264 3v65_B Low-density lipoprotein 98.8 1.2E-05 4.2E-10 78.9 29.6 245 223-480 78-327 (386)
265 3qqz_A Putative uncharacterize 98.7 2.4E-05 8E-10 71.5 27.8 209 258-470 21-252 (255)
266 3v9f_A Two-component system se 98.7 2.4E-05 8.1E-10 84.6 32.3 281 220-511 311-610 (781)
267 3p5b_L Low density lipoprotein 98.7 9.9E-05 3.4E-09 72.8 33.8 246 234-490 84-338 (400)
268 2fp8_A Strictosidine synthase; 98.7 5.4E-06 1.8E-10 79.3 23.5 234 264-511 19-312 (322)
269 3v9f_A Two-component system se 98.7 8.3E-05 2.8E-09 80.3 35.3 279 221-511 162-477 (781)
270 3qqz_A Putative uncharacterize 98.6 5.3E-05 1.8E-09 69.1 27.6 205 302-509 21-248 (255)
271 3tc9_A Hypothetical hydrolase; 98.6 1.8E-05 6.3E-10 78.8 26.1 244 222-470 137-429 (430)
272 4hw6_A Hypothetical protein, I 98.5 2.9E-05 9.8E-10 77.4 25.5 244 222-470 139-432 (433)
273 1flg_A Protein (quinoprotein e 98.5 4.1E-05 1.4E-09 79.3 27.3 195 233-435 68-364 (582)
274 3sov_A LRP-6, low-density lipo 98.5 0.00011 3.8E-09 69.9 27.1 234 235-479 6-246 (318)
275 2xbg_A YCF48-like protein; pho 98.5 0.00059 2E-08 65.2 31.8 272 221-511 35-319 (327)
276 3ei3_A DNA damage-binding prot 98.5 0.0016 5.5E-08 72.6 39.1 283 221-513 553-914 (1158)
277 2xe4_A Oligopeptidase B; hydro 98.5 2.4E-05 8.2E-10 84.0 23.8 244 218-474 169-461 (751)
278 3tc9_A Hypothetical hydrolase; 98.4 6.3E-05 2.2E-09 74.9 25.2 237 265-510 138-428 (430)
279 3s94_A LRP-6, low-density lipo 98.4 0.0022 7.5E-08 66.8 37.3 281 219-510 124-463 (619)
280 2xe4_A Oligopeptidase B; hydro 98.4 3.5E-05 1.2E-09 82.7 23.5 197 265-469 175-398 (751)
281 1ijq_A LDL receptor, low-densi 98.4 0.0018 6.2E-08 61.4 31.9 210 221-435 29-247 (316)
282 3v64_C Agrin; beta propeller, 98.4 0.00055 1.9E-08 66.0 28.6 207 222-435 73-284 (349)
283 3v65_B Low-density lipoprotein 98.3 0.00043 1.5E-08 67.9 27.2 208 221-435 115-327 (386)
284 3kya_A Putative phosphatase; s 98.3 0.00052 1.8E-08 68.7 27.7 243 265-511 140-474 (496)
285 3p5b_L Low density lipoprotein 98.3 0.0019 6.6E-08 63.5 31.8 211 220-435 110-329 (400)
286 4hw6_A Hypothetical protein, I 98.3 0.00018 6.1E-09 71.6 24.5 238 265-510 140-431 (433)
287 3amr_A 3-phytase; beta-propell 98.3 0.0004 1.4E-08 65.8 25.1 200 231-434 38-272 (355)
288 3kya_A Putative phosphatase; s 98.3 0.00028 9.5E-09 70.6 25.3 252 223-478 140-482 (496)
289 1k3i_A Galactose oxidase precu 98.3 2.3E-05 7.9E-10 82.8 18.1 256 200-460 220-530 (656)
290 3m0c_C LDL receptor, low-densi 98.2 0.0021 7E-08 68.7 32.0 234 235-479 397-640 (791)
291 2ism_A Putative oxidoreductase 98.2 0.0021 7.1E-08 62.0 29.2 230 221-459 30-333 (352)
292 2p9w_A MAL S 1 allergenic prot 98.2 0.00081 2.8E-08 63.1 24.4 209 259-471 8-265 (334)
293 2xzh_A Clathrin heavy chain 1; 98.2 0.0043 1.5E-07 57.7 28.8 253 242-510 48-328 (365)
294 1n7d_A LDL receptor, low-densi 98.2 9.2E-06 3.1E-10 86.2 12.5 240 242-491 385-633 (699)
295 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0081 2.8E-07 62.6 33.7 231 235-478 8-244 (628)
296 3sov_A LRP-6, low-density lipo 98.1 0.0019 6.6E-08 61.3 26.4 206 223-435 36-247 (318)
297 3s94_A LRP-6, low-density lipo 98.1 0.0019 6.6E-08 67.2 27.9 227 242-478 17-250 (619)
298 2xbg_A YCF48-like protein; pho 98.1 0.008 2.7E-07 57.2 32.5 246 209-468 66-319 (327)
299 3a9g_A Putative uncharacterize 98.1 0.01 3.4E-07 57.2 30.3 234 221-459 28-330 (354)
300 1bpo_A Protein (clathrin); cla 98.0 0.012 4.1E-07 57.0 31.9 253 242-510 47-327 (494)
301 2g8s_A Glucose/sorbosone dehyd 98.0 0.0044 1.5E-07 59.8 26.6 235 222-458 18-340 (353)
302 3m0c_C LDL receptor, low-densi 98.0 0.0082 2.8E-07 64.1 30.4 209 220-434 422-640 (791)
303 2ism_A Putative oxidoreductase 98.0 0.0022 7.4E-08 61.9 23.4 226 264-502 31-333 (352)
304 3amr_A 3-phytase; beta-propell 97.9 0.005 1.7E-07 58.3 24.9 186 319-511 40-262 (355)
305 2xzh_A Clathrin heavy chain 1; 97.9 0.014 4.6E-07 54.4 32.2 231 229-470 74-331 (365)
306 4a0p_A LRP6, LRP-6, low-densit 97.9 0.032 1.1E-06 58.1 41.2 284 220-512 121-463 (628)
307 1bpo_A Protein (clathrin); cla 97.9 0.02 7E-07 55.4 31.3 232 228-470 72-330 (494)
308 2p9w_A MAL S 1 allergenic prot 97.8 0.0025 8.5E-08 59.8 20.2 166 305-472 10-216 (334)
309 3a9g_A Putative uncharacterize 97.8 0.027 9.1E-07 54.2 29.5 241 263-511 28-349 (354)
310 3sre_A PON1, serum paraoxonase 97.8 0.023 7.8E-07 54.4 26.3 196 224-424 52-296 (355)
311 2g8s_A Glucose/sorbosone dehyd 97.6 0.03 1E-06 53.8 25.4 242 264-511 18-351 (353)
312 1n7d_A LDL receptor, low-densi 97.6 0.00052 1.8E-08 72.7 13.3 209 222-435 406-623 (699)
313 3sre_A PON1, serum paraoxonase 97.5 0.025 8.5E-07 54.1 23.2 186 309-502 51-285 (355)
314 3sbq_A Nitrous-oxide reductase 97.5 0.064 2.2E-06 53.6 25.3 264 236-502 73-453 (638)
315 3das_A Putative oxidoreductase 97.5 0.077 2.6E-06 50.5 29.1 241 217-459 27-326 (347)
316 2vpj_A Kelch-like protein 12; 97.4 0.011 3.7E-07 55.4 18.7 229 232-474 14-281 (301)
317 3s25_A Hypothetical 7-bladed b 97.4 0.03 1E-06 52.4 21.4 212 271-512 21-253 (302)
318 2xn4_A Kelch-like protein 2; s 97.3 0.015 5.1E-07 54.4 18.8 228 234-475 17-280 (302)
319 1cru_A Protein (soluble quinop 97.3 0.16 5.5E-06 50.5 30.9 107 221-327 26-163 (454)
320 2vpj_A Kelch-like protein 12; 97.3 0.013 4.3E-07 54.9 17.9 213 287-512 31-278 (301)
321 3ii7_A Kelch-like protein 7; p 97.3 0.019 6.4E-07 53.8 18.8 224 276-512 12-272 (306)
322 3s25_A Hypothetical 7-bladed b 97.3 0.078 2.7E-06 49.5 22.7 236 230-502 22-280 (302)
323 3pbp_A Nucleoporin NUP82; beta 97.2 0.042 1.4E-06 53.1 20.5 148 270-422 27-208 (452)
324 4asc_A Kelch repeat and BTB do 97.2 0.038 1.3E-06 52.0 19.8 230 235-477 7-283 (315)
325 3ott_A Two-component system se 97.2 0.36 1.2E-05 51.5 35.0 261 221-501 21-296 (758)
326 3ii7_A Kelch-like protein 7; p 97.1 0.044 1.5E-06 51.3 19.6 227 234-474 13-275 (306)
327 3ei3_A DNA damage-binding prot 97.1 0.54 1.9E-05 52.4 39.2 168 330-508 808-993 (1158)
328 2xn4_A Kelch-like protein 2; s 97.1 0.041 1.4E-06 51.3 19.1 214 287-512 30-276 (302)
329 3pbp_A Nucleoporin NUP82; beta 97.1 0.064 2.2E-06 51.9 20.1 148 317-467 30-208 (452)
330 1xi4_A Clathrin heavy chain; a 97.0 0.034 1.2E-06 61.8 19.7 235 242-492 47-309 (1630)
331 1zgk_A Kelch-like ECH-associat 96.9 0.064 2.2E-06 50.2 18.8 230 232-475 24-291 (308)
332 1xi4_A Clathrin heavy chain; a 96.9 0.042 1.4E-06 61.1 18.9 200 229-434 73-297 (1630)
333 2uvk_A YJHT; unknown function, 96.9 0.024 8.1E-07 54.5 15.8 237 232-479 19-350 (357)
334 2be1_A Serine/threonine-protei 96.9 0.045 1.5E-06 51.9 17.1 195 234-431 11-236 (339)
335 2woz_A Kelch repeat and BTB do 96.9 0.091 3.1E-06 49.4 19.5 222 244-477 25-293 (318)
336 1zgk_A Kelch-like ECH-associat 96.7 0.048 1.6E-06 51.1 16.0 213 287-512 39-287 (308)
337 3ott_A Two-component system se 96.5 1.1 3.9E-05 47.6 37.6 269 221-509 62-349 (758)
338 2zwa_A Leucine carboxyl methyl 96.5 0.076 2.6E-06 56.1 17.2 226 275-503 397-674 (695)
339 3das_A Putative oxidoreductase 96.5 0.41 1.4E-05 45.4 20.5 150 303-457 27-218 (347)
340 1tl2_A L10, protein (tachylect 96.4 0.11 3.8E-06 45.5 14.9 153 350-511 42-207 (236)
341 4asc_A Kelch repeat and BTB do 96.4 0.22 7.6E-06 46.6 18.3 220 201-432 15-283 (315)
342 1cru_A Protein (soluble quinop 96.2 0.28 9.5E-06 48.7 18.8 108 307-414 26-162 (454)
343 2uvk_A YJHT; unknown function, 96.1 0.12 4.1E-06 49.4 15.3 93 275-369 19-128 (357)
344 2woz_A Kelch repeat and BTB do 95.6 1.4 4.9E-05 40.9 20.5 193 229-432 53-293 (318)
345 2zwa_A Leucine carboxyl methyl 95.3 0.94 3.2E-05 47.7 19.0 199 231-430 396-639 (695)
346 1tl2_A L10, protein (tachylect 95.1 0.22 7.7E-06 43.6 11.1 103 397-505 42-156 (236)
347 2be1_A Serine/threonine-protei 95.1 0.038 1.3E-06 52.4 6.9 186 284-476 17-236 (339)
348 2wg3_C Hedgehog-interacting pr 94.9 3.4 0.00012 40.9 31.2 107 222-328 14-159 (463)
349 3sbq_A Nitrous-oxide reductase 93.6 0.44 1.5E-05 47.7 10.9 126 330-459 299-453 (638)
350 3q6k_A 43.2 kDa salivary prote 92.6 7.4 0.00025 37.2 25.3 190 244-458 124-341 (381)
351 3qhy_B Beta-lactamase inhibito 90.7 9.6 0.00033 34.7 17.3 247 223-502 25-272 (282)
352 2wg3_C Hedgehog-interacting pr 88.2 21 0.00073 35.1 31.2 242 264-511 14-370 (463)
353 3qhy_B Beta-lactamase inhibito 86.4 14 0.00049 33.5 13.9 219 265-510 25-244 (282)
354 3b7f_A Glycosyl hydrolase, BNR 86.0 24 0.00083 33.6 27.0 260 221-492 54-391 (394)
355 3q6k_A 43.2 kDa salivary prote 84.4 29 0.00099 33.1 23.1 186 287-502 123-342 (381)
356 4hvt_A Ritya.17583.B, post-pro 81.6 55 0.0019 34.2 19.8 223 271-502 137-415 (711)
357 1wp5_A Topoisomerase IV; broke 81.1 35 0.0012 31.7 26.8 236 231-470 3-276 (323)
358 4hvt_A Ritya.17583.B, post-pro 81.0 57 0.002 34.1 24.8 242 224-473 131-431 (711)
359 3no0_A DNA gyrase subunit A; D 80.0 34 0.0012 30.9 24.5 198 264-470 24-245 (276)
360 3b7f_A Glycosyl hydrolase, BNR 75.0 58 0.002 30.9 27.8 215 234-458 23-296 (394)
361 4gq2_M Nucleoporin NUP120; bet 74.1 10 0.00035 41.4 9.4 38 222-259 236-273 (950)
362 1suu_A DNA gyrase subunit A; t 70.9 65 0.0022 29.6 29.0 192 230-425 5-230 (312)
363 1zi0_A DNA gyrase subunit A; b 70.8 64 0.0022 29.6 27.8 236 231-471 1-277 (307)
364 3zwu_A Alkaline phosphatase PH 69.6 16 0.00055 37.2 9.0 59 443-501 478-548 (592)
365 3no0_A DNA gyrase subunit A; D 69.2 65 0.0022 29.0 22.9 197 222-424 24-244 (276)
366 4a9v_A PHOX; hydrolase, beta-p 67.0 23 0.00079 35.7 9.3 61 442-502 477-549 (592)
367 3kci_A Probable E3 ubiquitin-p 65.5 94 0.0032 29.4 32.3 229 276-510 63-343 (389)
368 3f7f_A Nucleoporin NUP120; nuc 64.1 23 0.00077 36.8 8.8 37 223-261 223-259 (729)
369 4fhn_B Nucleoporin NUP120; pro 62.8 1.1E+02 0.0038 33.9 15.0 37 443-479 240-276 (1139)
370 4gq2_M Nucleoporin NUP120; bet 60.3 1.9E+02 0.0066 31.3 22.8 38 397-434 237-274 (950)
371 3l6v_A GYRA, DNA gyrase subuni 60.0 1.2E+02 0.004 28.7 26.8 236 229-469 3-314 (370)
372 4fhn_B Nucleoporin NUP120; pro 59.5 95 0.0033 34.5 13.7 37 398-434 240-276 (1139)
373 3uc1_A DNA gyrase subunit A; D 58.0 1.2E+02 0.004 28.1 24.1 199 223-425 43-278 (327)
374 3zwu_A Alkaline phosphatase PH 57.2 27 0.00093 35.5 8.0 59 398-458 478-548 (592)
375 3uc1_A DNA gyrase subunit A; D 56.0 1.3E+02 0.0043 27.9 25.5 234 234-470 4-278 (327)
376 4a9v_A PHOX; hydrolase, beta-p 46.1 72 0.0025 32.2 8.8 62 396-459 476-549 (592)
377 1sqj_A OXG-RCBH, oligoxylogluc 46.0 2.9E+02 0.0099 29.1 28.3 146 221-369 14-190 (789)
378 1zvt_A Topoisomerase IV subuni 40.6 1.9E+02 0.0066 25.5 15.2 141 235-379 4-163 (256)
379 3f7f_A Nucleoporin NUP120; nuc 39.0 37 0.0013 35.3 5.6 31 450-480 229-259 (729)
380 1zi0_A DNA gyrase subunit A; b 35.6 2.5E+02 0.0087 25.4 25.1 189 232-425 52-276 (307)
381 1suu_A DNA gyrase subunit A; t 31.6 3E+02 0.01 25.0 25.4 145 232-380 57-232 (312)
382 1b2p_A Protein (lectin); manno 25.8 2.2E+02 0.0074 21.6 7.1 54 454-511 63-116 (119)
383 4d9s_A UVB-resistance protein 24.9 4.4E+02 0.015 24.8 29.4 234 269-508 19-301 (406)
384 1wp5_A Topoisomerase IV; broke 23.5 4.3E+02 0.015 24.2 25.5 145 232-379 49-225 (323)
385 3a0c_A Mannose/sialic acid-bin 22.6 2.4E+02 0.0081 20.9 7.8 53 455-511 54-106 (110)
386 2cn3_A Xyloglucanase, beta-1,4 21.0 7E+02 0.024 25.7 24.9 101 265-367 24-151 (737)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.8e-48 Score=407.35 Aligned_cols=308 Identities=20% Similarity=0.307 Sum_probs=257.8
Q ss_pred eeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEec-------CCCCc
Q psy6127 193 HSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTIN-------SKKYG 265 (515)
Q Consensus 193 ~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~-------~~~~~ 265 (515)
++++.|+.+++|+ .+++++..++.+|.+.|++++|+|||++||+|+.|++|++||..+++....+. +|...
T Consensus 164 ~s~s~D~~v~lwd--~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 164 ISGSDDNTVAIFE--GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp EEEETTSCEEEEE--TTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred EEEeCCCeEEEEE--CCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence 3677788899998 67788899999999999999999999999999999999999999999888874 79999
Q ss_pred eeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeE-------------------------------------------E
Q psy6127 266 VDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVR-------------------------------------------Y 302 (515)
Q Consensus 266 v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~-------------------------------------------~ 302 (515)
|.+++|+|++..+++++ .|++|++||+.+++.+. .
T Consensus 242 V~~v~~spdg~~l~s~s--~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~ 319 (611)
T 1nr0_A 242 VFGLTWSPDGTKIASAS--ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV 319 (611)
T ss_dssp EEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred EEEEEECCCCCEEEEEe--CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence 99999999999887665 79999999998876543 3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-------------------------------------
Q psy6127 303 FPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI------------------------------------- 345 (515)
Q Consensus 303 ~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------------------------------------- 345 (515)
+.+|...|++++|+|++++|++++.|++|++||+.+++....+
T Consensus 320 ~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence 4579999999999999999999999999999999876543221
Q ss_pred ----------------------------------------------ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeec
Q psy6127 346 ----------------------------------------------QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRS 379 (515)
Q Consensus 346 ----------------------------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 379 (515)
.+...+.+++|+|+|+++++|+.|++|++||+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~ 479 (611)
T 1nr0_A 400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 479 (611)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC
Confidence 1112356789999999999999999999999986
Q ss_pred CCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CceeEEeeccccCCCCCEEEEEecCCCEEEEE
Q psy6127 380 YDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFN-GNCVQSLSGVLNNNASPLEATFTPDSQFVASG 458 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sg 458 (515)
... ..... ..|...|++++|+|+|++|++++.|++|++||+.+ ++..... ....|...|.+++|+|||++|++|
T Consensus 480 ~~~---~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~-~~~~H~~~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 480 ASV---SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN-SWTFHTAKVACVSWSPDNVRLATG 554 (611)
T ss_dssp TEE---EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC-CCCCCSSCEEEEEECTTSSEEEEE
T ss_pred Cce---eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee-eeeecccceeEEEECCCCCEEEEE
Confidence 421 11222 45778899999999999999999999999999987 5544321 111245569999999999999999
Q ss_pred eCCCcEEEEECCCCe-EE-EEEcCCC-CCCeEEEEECCCCCEEEEeeCC--EEEEcCC
Q psy6127 459 STDGQVHIWNAERGY-KV-CVLDGDH-PSAVQSLQFNPKYHMLASACSN--MAFWIPT 511 (515)
Q Consensus 459 s~dg~I~iwd~~~~~-~~-~~~~~~h-~~~V~~l~~sp~~~~las~~~d--v~iW~~~ 511 (515)
+.|++|++||+.++. .. ..+.+ | .+.|++++|+|+++ |++++.| +++|+++
T Consensus 555 s~D~~v~lW~~~~~~~~~~~~~~~-h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 555 SLDNSVIVWNMNKPSDHPIIIKGA-HAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTSCEEEEETTCTTSCCEEETTS-STTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ECCCcEEEEECCCcccccchhhcc-CcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999999999998865 33 45555 8 89999999999998 8888765 9999985
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-46 Score=395.55 Aligned_cols=361 Identities=13% Similarity=0.143 Sum_probs=287.3
Q ss_pred hheeecccccccccccCCCCcCCCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEcccee----
Q psy6127 133 KIVAKSENMCNLTKLDLPYNKLGSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLV---- 208 (515)
Q Consensus 133 ~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~---- 208 (515)
+.||++. ...| .+||..+++.+.++.+|...+.+++|.|... +.++++.|+.+++||-..
T Consensus 31 ~~l~~~~-~~~v----------~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-----~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 31 DKIQYCN-GTSV----------YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-----YCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp SEEEEEE-TTEE----------EEEETTCSSCCEEECCCSSCEEEEEECTTSS-----EEEEEETTSEEEEEESSSTTCC
T ss_pred CEEEeCC-CCEE----------EEecCCCcccCeEecCCCCceEEEEECCCCc-----EEEEEeCCCCEEEeECCCCcce
Confidence 4566654 3456 9999999999999999977777777766532 334777788888887310
Q ss_pred --ee--------------------------------------eEeeeeccccCCcEEEEEEcCCCC-EEEEEeCCCeEEE
Q psy6127 209 --RS--------------------------------------YRVAKVFRENTDKINSLDYSSDGS-LLISCSDDDQIII 247 (515)
Q Consensus 209 --~~--------------------------------------~~~~~~~~~h~~~I~~l~~spd~~-~lasgs~dg~i~i 247 (515)
.. +++..++.+|.+.|++++|+|++. .|++|+.|++|++
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~l 174 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEE
Confidence 00 011234678888999999999886 5999999999999
Q ss_pred EECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEec-------CCCCCeEEEEEcCCCC
Q psy6127 248 YDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFP-------GHVRKVSSLNLSPVDD 320 (515)
Q Consensus 248 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~ 320 (515)
||..+++....+.+|...|.+++|+|+++.+++++ .|++|++||+.+++.+..+. +|.+.|.+++|+|+++
T Consensus 175 wd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s--~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 252 (611)
T 1nr0_A 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252 (611)
T ss_dssp EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred EECCCCeEeeeeccccCceEEEEECCCCCEEEEEE--CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence 99999999999999999999999999999777654 79999999999999888884 7999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCeEEEE--------------------------------------------ecCCCeeEEEE
Q psy6127 321 SFISGSYDKTVRVWDLRQPNNVGMI--------------------------------------------QLSGNKPIAAY 356 (515)
Q Consensus 321 ~l~s~s~dg~i~iwd~~~~~~~~~~--------------------------------------------~~~~~~~~~~~ 356 (515)
+|++++.|++|++||+++++....+ .+...+.+++|
T Consensus 253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~ 332 (611)
T 1nr0_A 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS 332 (611)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE
Confidence 9999999999999999988765543 23456889999
Q ss_pred CCCCCEEEEEECCCcEEEEEeecCCCCCc---------eeee--------------------------------------
Q psy6127 357 DPEGLAFAIGVNSDSIKLYDVRSYDKGPF---------ASFK-------------------------------------- 389 (515)
Q Consensus 357 s~~~~~l~~g~~dg~i~i~d~~~~~~~~~---------~~~~-------------------------------------- 389 (515)
+|+|++|++++.|++|++||+.++..... ..+.
T Consensus 333 spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 333 SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence 99999999999999999999875421000 0000
Q ss_pred ------c-CC-----------------------CCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccC
Q psy6127 390 ------C-PG-----------------------ERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNN 439 (515)
Q Consensus 390 ------~-~~-----------------------~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 439 (515)
. .. .+...+.+++|+|+|+++++|+.|++|++||+.++..... .. ..+
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~-~~-~~h 490 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV-KT-IVH 490 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE-EE-EEC
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee-ec-cCC
Confidence 0 00 0234577899999999999999999999999987653211 11 234
Q ss_pred CCCCEEEEEecCCCEEEEEeCCCcEEEEECCC-CeEEEE-EcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 440 NASPLEATFTPDSQFVASGSTDGQVHIWNAER-GYKVCV-LDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 440 ~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~-~~~~~~-~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
...|.+++|+|+|++|++++.|++|++||+.+ +++... ....|.+.|++++|+||+++||+++.| +++|+++..
T Consensus 491 ~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 491 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 55699999999999999999999999999987 665543 223399999999999999999999865 999999754
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-46 Score=376.85 Aligned_cols=287 Identities=21% Similarity=0.355 Sum_probs=262.8
Q ss_pred eeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEE
Q psy6127 214 AKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLS 293 (515)
Q Consensus 214 ~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd 293 (515)
...+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|+++.+++++ .|++|++||
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs--~D~~i~iwd 178 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS--ADMTIKLWD 178 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE--TTSCCCEEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe--CCCeEEEEe
Confidence 456789999999999999999999999999999999999999999999999999999999998776654 799999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEECCCcE
Q psy6127 294 LHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNSDSI 372 (515)
Q Consensus 294 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i 372 (515)
+.+++++..+.+|...|.+++|+|++++|++|+.|++|++||++++.++..+. +...+.++.++|++.++++|+.|++|
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 99999999999999999999999999999999999999999999999988874 44568999999999999999999999
Q ss_pred EEEEeecCCCCCceeeecCCCCCcCeEEEEEcCC--------------------CCEEEEEECCCcEEEEECCCCceeEE
Q psy6127 373 KLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPD--------------------GKLILVSTNGSIIRLFDAFNGNCVQS 432 (515)
Q Consensus 373 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~--------------------~~~l~~~s~dg~i~iwd~~~~~~~~~ 432 (515)
++||+++.. .......|...|.+++|+|+ +.++++|+.|+.|++||+++++++..
T Consensus 259 ~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~ 333 (410)
T 1vyh_C 259 RVWVVATKE-----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 (410)
T ss_dssp EEEETTTCC-----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEECCCCc-----eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 999998754 33444578889999999996 67899999999999999999999998
Q ss_pred eeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcC
Q psy6127 433 LSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIP 510 (515)
Q Consensus 433 ~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~ 510 (515)
+.+|.. .|.+++|+|+|++|++|+.||.|++||+.+++++..+.+ |...|++++|+|++.+|++|+.| +++|++
T Consensus 334 ~~~h~~---~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 334 LVGHDN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECCSS---CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-CSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EECCCC---cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 887654 499999999999999999999999999999999999988 99999999999999999999866 999986
Q ss_pred C
Q psy6127 511 T 511 (515)
Q Consensus 511 ~ 511 (515)
.
T Consensus 410 r 410 (410)
T 1vyh_C 410 R 410 (410)
T ss_dssp -
T ss_pred C
Confidence 3
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-45 Score=355.57 Aligned_cols=292 Identities=20% Similarity=0.320 Sum_probs=258.9
Q ss_pred EeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEE
Q psy6127 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRY 291 (515)
Q Consensus 212 ~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~v 291 (515)
+..++|++|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|+++.+++++ .|++|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~d~~i~v 81 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS--DDFRIRV 81 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE--TTSEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC--CCCEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999887665 7999999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeE-EEE-ecCCCeeEEEECC-CCCEEEEEEC
Q psy6127 292 LSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNV-GMI-QLSGNKPIAAYDP-EGLAFAIGVN 368 (515)
Q Consensus 292 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~-~~~~~~~~~~~s~-~~~~l~~g~~ 368 (515)
||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|++|++||++++... ..+ .+...+.+++|+| ++..+++|+.
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999987544 444 4556799999999 6789999999
Q ss_pred CCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcC--CCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEE
Q psy6127 369 SDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSP--DGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEA 446 (515)
Q Consensus 369 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~ 446 (515)
|++|++||++.... .......+...+..+.|+| +++++++++.|++|++||+++++++..+.+|... |.++
T Consensus 162 D~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~---v~~~ 234 (304)
T 2ynn_A 162 DRTVKVWSLGQSTP----NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN---VSFA 234 (304)
T ss_dssp TSEEEEEETTCSSC----SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC---EEEE
T ss_pred CCeEEEEECCCCCc----cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC---EEEE
Confidence 99999999976442 2222345666788999987 7789999999999999999999999999876544 9999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCC--EEEEeeCC-EEEEcCCCC
Q psy6127 447 TFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYH--MLASACSN-MAFWIPTLS 513 (515)
Q Consensus 447 ~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~las~~~d-v~iW~~~~~ 513 (515)
+|+|++++|++|+.||+|++||+.+++++..+.. |...+++++|+|++. ++|+++.+ ..+|++..+
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV-GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-SSSSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCceeeeccC-CCccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 9999999999999999999999999999999987 889999999999875 68888776 788887643
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-45 Score=358.34 Aligned_cols=290 Identities=19% Similarity=0.307 Sum_probs=259.5
Q ss_pred eEeeeeccccCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCee--eeEecCCCCceeEEEEecCCCeEEEEEee
Q psy6127 211 YRVAKVFRENTDKINSLDYSSD----GSLLISCSDDDQIIIYDCEQGTS--KNTINSKKYGVDLIKFTHSKTTAIHASTK 284 (515)
Q Consensus 211 ~~~~~~~~~h~~~I~~l~~spd----~~~lasgs~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~~ 284 (515)
+.+.+.+++|.+.|++++|+|+ +++|+||+.|++|++|++.+++. ...+.+|...|.+++|++++..++++ +
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~--s 99 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASS--S 99 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEE--E
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEE--e
Confidence 4445678899999999999984 67999999999999999987654 45689999999999999999876655 4
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEec-CCCeeEEEECCCCCEE
Q psy6127 285 VDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQL-SGNKPIAAYDPEGLAF 363 (515)
Q Consensus 285 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~l 363 (515)
.|++|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||+++++....+.. ...+.+++|+|++++|
T Consensus 100 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence 899999999999999999999999999999999999999999999999999999998877744 4558899999999999
Q ss_pred EEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCC
Q psy6127 364 AIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASP 443 (515)
Q Consensus 364 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i 443 (515)
++|+.||.|++||+++++ .......|..+|.+++|+|++++|++++.|+.|++||+++++....+.+|.. .|
T Consensus 180 asg~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~---~v 251 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGK-----LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS---WV 251 (321)
T ss_dssp EEEETTSCEEEEETTTTE-----EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS---CE
T ss_pred EEEcCCCeEEEEECCCCc-----EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC---ce
Confidence 999999999999998754 4444567888999999999999999999999999999999998888877554 49
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCC
Q psy6127 444 LEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPT 511 (515)
Q Consensus 444 ~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~ 511 (515)
.+++|+|++++|++++.|++|++||+.+++++..+.+ |.+.|++++|+|++.+|++++.| +++||.+
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD-HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999999988 99999999999999999999865 9999976
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-45 Score=359.02 Aligned_cols=289 Identities=20% Similarity=0.319 Sum_probs=259.8
Q ss_pred eEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEE
Q psy6127 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLR 290 (515)
Q Consensus 211 ~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~ 290 (515)
.+...++++|.+.|++++|+||+++|++|+.||+|++||..+++....+..|...|.+++|+|+++.+++++ .|+.++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~d~~v~ 122 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG--LDNICS 122 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEE--TTCEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEe--CCCeEE
Confidence 345678899999999999999999999999999999999999999999999999999999999999777654 799999
Q ss_pred EEECCCC----eeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEE
Q psy6127 291 YLSLHDN----KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAI 365 (515)
Q Consensus 291 vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~ 365 (515)
+||+.++ +....+.+|.+.|.++.|++++. +++++.|++|++||+++++.+..+. +...+.+++|+|+++++++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9999875 45667889999999999998765 8999999999999999999888884 5567999999999999999
Q ss_pred EECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEE
Q psy6127 366 GVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLE 445 (515)
Q Consensus 366 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 445 (515)
|+.|+.|++||++++. .......|...|++++|+|++++|++++.|+.|++||+++++.+..+. +......+.+
T Consensus 202 g~~d~~v~~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~v~~ 275 (340)
T 1got_B 202 GACDASAKLWDVREGM-----CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITS 275 (340)
T ss_dssp EETTSCEEEEETTTCS-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCEEE
T ss_pred EeCCCcEEEEECCCCe-----eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-cCCcccceEE
Confidence 9999999999998754 444456788899999999999999999999999999999998877665 3333445899
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEc
Q psy6127 446 ATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWI 509 (515)
Q Consensus 446 ~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~ 509 (515)
++|+|+|++|++|+.||.|++||+.+++.+..+.+ |.++|++++|+|++.+|++++.| ++||+
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec-CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999988 99999999999999999999865 99996
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.5e-45 Score=381.49 Aligned_cols=341 Identities=24% Similarity=0.377 Sum_probs=295.0
Q ss_pred hheeecccccccccccCCCCcCCCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE
Q psy6127 133 KIVAKSENMCNLTKLDLPYNKLGSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR 212 (515)
Q Consensus 133 ~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~ 212 (515)
+.|++++.++.| ++||. +++.+.++.+|...+.++.+.+... ...+++.++.+++|+. ..+
T Consensus 234 ~~l~~~~~d~~i----------~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~-----~l~~~~~d~~i~~w~~---~~~ 294 (577)
T 2ymu_A 234 QTIASASDDKTV----------KLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQ-----TIASASDDKTVKLWNR---NGQ 294 (577)
T ss_dssp SCEEEEETTSCE----------EEECT-TSCEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSCEEEEET---TSC
T ss_pred CEEEEEeCCCEE----------EEEeC-CCCEEEEEecCCCCEEEEEEcCCCC-----EEEEEeCCCEEEEEeC---CCc
Confidence 567788888888 99995 5778888899877777888776543 2236677888999983 356
Q ss_pred eeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEE
Q psy6127 213 VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYL 292 (515)
Q Consensus 213 ~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vw 292 (515)
+...+.+|...|.+++|+|++++|++++.|++|++||.. ++....+.+|...+.+++|+|++..+++++ .|+.+++|
T Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~v~~~ 371 (577)
T 2ymu_A 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASAS--DDKTVKLW 371 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSEEEEE
T ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEe--CCCEEEEE
Confidence 778889999999999999999999999999999999976 556677889999999999999999877664 79999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECCCCCEEEEEECCCc
Q psy6127 293 SLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDPEGLAFAIGVNSDS 371 (515)
Q Consensus 293 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~ 371 (515)
|. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+ .+...+.+++|+|+++++++++.|+.
T Consensus 372 ~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 372 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp ET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence 95 57788889999999999999999999999999999999996 45555555 55667899999999999999999999
Q ss_pred EEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecC
Q psy6127 372 IKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPD 451 (515)
Q Consensus 372 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 451 (515)
|++||... + .......|...|++++|+|++++|++++.|+.|++||. +++++..+.+|.. .|++++|+|+
T Consensus 450 v~~w~~~~-~-----~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~---~v~~l~~s~d 519 (577)
T 2ymu_A 450 VKLWNRNG-Q-----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS---SVRGVAFSPD 519 (577)
T ss_dssp EEEEETTS-C-----EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS---CEEEEEECTT
T ss_pred EEEEECCC-C-----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC---CEEEEEEcCC
Confidence 99999643 1 33334567889999999999999999999999999994 7888888887554 4999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEc
Q psy6127 452 SQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWI 509 (515)
Q Consensus 452 g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~ 509 (515)
|++|++++.||.|++||. +++++..+.+ |.+.|++++|+||+++|++++.| +++||
T Consensus 520 g~~l~s~~~dg~v~lwd~-~~~~~~~~~~-h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSEEEEECT-TSCEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECcCEEEEEeC-CCCEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999996 6889999988 99999999999999999999866 99997
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-43 Score=343.43 Aligned_cols=295 Identities=25% Similarity=0.422 Sum_probs=263.9
Q ss_pred eeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeE
Q psy6127 210 SYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATL 289 (515)
Q Consensus 210 ~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v 289 (515)
.+....++.+|.+.|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|+++.+++++ .|+.|
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~d~~i 89 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS--DDKTL 89 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEEC--CCCEE
Confidence 4566788999999999999999999999999999999999999999999999999999999999998877665 79999
Q ss_pred EEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEEC
Q psy6127 290 RYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVN 368 (515)
Q Consensus 290 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~ 368 (515)
++||+++++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999999999888874 4567899999999999999999
Q ss_pred CCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEE
Q psy6127 369 SDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATF 448 (515)
Q Consensus 369 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 448 (515)
||.|++||+++.+. .......+...+..++|+|+++++++++.|+.|++||+++++++..+.++......+.....
T Consensus 170 d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 170 DGLCRIWDTASGQC----LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp TSCEEEEETTTCCE----EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred CCcEEEEECCCCce----eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 99999999987541 22223456678999999999999999999999999999999999988877665444444444
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee----CCEEEEcCC
Q psy6127 449 TPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC----SNMAFWIPT 511 (515)
Q Consensus 449 sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~----~dv~iW~~~ 511 (515)
.+++.++++|+.||.|++||+.+++.+..+.+ |.+.|.+++|+|++.++++++ +.+++|+.+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEECC-CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhhc-cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 57889999999999999999999999999998 999999999999999999985 349999875
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.6e-44 Score=352.06 Aligned_cols=289 Identities=17% Similarity=0.289 Sum_probs=257.2
Q ss_pred EeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEE
Q psy6127 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRY 291 (515)
Q Consensus 212 ~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~v 291 (515)
+...++++|.+.|++++|+|++++||||+.||+|++||..+++....+..|...|.+++|+|++..++++ +.|+.+++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg--~~d~~i~v 132 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACG--GLDNKCSV 132 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEE--STTSEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEe--eCCCCEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999877655 58999999
Q ss_pred EECCCC------eeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECC--CCCE
Q psy6127 292 LSLHDN------KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDP--EGLA 362 (515)
Q Consensus 292 wd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~--~~~~ 362 (515)
|++... .....+.+|...|.+++|+|++..|++++.|++|++||+++++.+..+. +...+.+++++| ++++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 998643 3455677899999999999999999999999999999999999988885 455688899987 5789
Q ss_pred EEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCC
Q psy6127 363 FAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNAS 442 (515)
Q Consensus 363 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 442 (515)
|++|+.||.|++||+++++ .......|...|++++|+|++++|++++.|++|++||+++++.+..+..+. ....
T Consensus 213 l~sgs~Dg~v~~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~-~~~~ 286 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQ-----CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES-IIFG 286 (354)
T ss_dssp EEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-CCSC
T ss_pred EEEEeCCCeEEEEECCCCc-----EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC-cccc
Confidence 9999999999999998865 444456788899999999999999999999999999999988776665332 3345
Q ss_pred CEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEc
Q psy6127 443 PLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWI 509 (515)
Q Consensus 443 i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~ 509 (515)
+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+ |.+.|++++|+|++++|++++.| +++|+
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG-HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC-CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 78999999999999999999999999999999999988 99999999999999999999866 99995
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-44 Score=360.86 Aligned_cols=300 Identities=17% Similarity=0.309 Sum_probs=260.3
Q ss_pred eeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCC
Q psy6127 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDA 287 (515)
Q Consensus 208 ~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~ 287 (515)
.....+.+++++|.+.|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|+++.++++ +.|+
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~--~~d~ 130 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG--GLDS 130 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC--CSSS
T ss_pred cceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe--eCCC
Confidence 34566778899999999999999999999999999999999999999999999999999999999999977654 5899
Q ss_pred eEEEEECCCCe-------eeEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCeEEEEe------cCCCeeE
Q psy6127 288 TLRYLSLHDNK-------YVRYFPGHVRKVSSLNLSPVD-DSFISGSYDKTVRVWDLRQPNNVGMIQ------LSGNKPI 353 (515)
Q Consensus 288 ~v~vwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~~~~ 353 (515)
.+++||+.+.. ....+.+|.+.|.++.|.|++ ..|++|+.|++|++||+++++.+..+. +...+.+
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 99999987532 345678999999999999975 479999999999999999999888762 3455888
Q ss_pred EEECC-CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEE
Q psy6127 354 AAYDP-EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQS 432 (515)
Q Consensus 354 ~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~ 432 (515)
++++| +++++++|+.|++|++||++.... .......|...|.+++|+|++++|++++.|++|++||+++++++..
T Consensus 211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDTTVRLWDLRITSR----AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp EEECSSSCCEEEEEETTSCEEEEETTTTCC----CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred EEeecCCCCEEEEEECCCeEEEEECCCCCc----ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence 99977 889999999999999999985321 3333457888999999999999999999999999999999998887
Q ss_pred eeccccC----CCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEc---CCCCCCeEEEEECCCCCEEEEeeCC-
Q psy6127 433 LSGVLNN----NASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLD---GDHPSAVQSLQFNPKYHMLASACSN- 504 (515)
Q Consensus 433 ~~~~~~~----~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~sp~~~~las~~~d- 504 (515)
+..+... ...+.+++|+|+|++|++|+.||.|++||+.+++.+..+. ..|.+.|++++|+|++.+|++|+.|
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~ 366 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK 366 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC
Confidence 7654322 2347899999999999999999999999999999888772 2399999999999999999999865
Q ss_pred -EEEEcCCCC
Q psy6127 505 -MAFWIPTLS 513 (515)
Q Consensus 505 -v~iW~~~~~ 513 (515)
+++|++...
T Consensus 367 ~i~iW~~~~~ 376 (380)
T 3iz6_a 367 NLKIWAFSGH 376 (380)
T ss_dssp CEEEEECCSS
T ss_pred CEEEEecCCC
Confidence 999998754
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.7e-43 Score=341.11 Aligned_cols=292 Identities=20% Similarity=0.279 Sum_probs=252.6
Q ss_pred eeeEeeeeccccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----CeeeeEecCCCCceeEEEEecCCCeEEEEE
Q psy6127 209 RSYRVAKVFRENTDKINSLDYSSDG-SLLISCSDDDQIIIYDCEQ-----GTSKNTINSKKYGVDLIKFTHSKTTAIHAS 282 (515)
Q Consensus 209 ~~~~~~~~~~~h~~~I~~l~~spd~-~~lasgs~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 282 (515)
+...+..++++|.+.|++++|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|++..+++++
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 3466778899999999999999965 8999999999999999864 345678899999999999999999877665
Q ss_pred eeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECCC---
Q psy6127 283 TKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPE--- 359 (515)
Q Consensus 283 ~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~--- 359 (515)
.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++.........+...+..+.++|.
T Consensus 85 --~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 85 --WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp --TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred --CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence 799999999999999999999999999999999999999999999999999975443333356667899999985
Q ss_pred ---CCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecc
Q psy6127 360 ---GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGV 436 (515)
Q Consensus 360 ---~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 436 (515)
+..+++++.|+.|++||++..+ .......|...|.+++|+|++++|++++.|+.|++||+.+++++..+..+
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 237 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQ-----IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTE-----EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred CCCccEEEEEeCCCEEEEEECCcch-----hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 4589999999999999998743 33344578889999999999999999999999999999999998888753
Q ss_pred ccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcC-------CCCCCeEEEEECCCCCEEEEeeCC--EEE
Q psy6127 437 LNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDG-------DHPSAVQSLQFNPKYHMLASACSN--MAF 507 (515)
Q Consensus 437 ~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~las~~~d--v~i 507 (515)
..+.+++|+|++.++++++.+ .+++|++..+..+..+.. .|...+.+++|+|||++|++++.| +++
T Consensus 238 ----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~v 312 (319)
T 3frx_A 238 ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312 (319)
T ss_dssp ----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEE
Confidence 349999999999999988755 499999998888777653 145679999999999999999865 999
Q ss_pred EcCCC
Q psy6127 508 WIPTL 512 (515)
Q Consensus 508 W~~~~ 512 (515)
|++..
T Consensus 313 Wd~~t 317 (319)
T 3frx_A 313 WQVMT 317 (319)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 99864
No 12
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.3e-43 Score=341.65 Aligned_cols=298 Identities=13% Similarity=0.164 Sum_probs=257.9
Q ss_pred ccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeC
Q psy6127 162 LHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSD 241 (515)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~ 241 (515)
+..+..+++|...|.++++.+....... +.++++.|+.+++|+.......+...+.+|...|.+++|+|++.++++|+.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence 3344566788777888888754322111 334888999999998332334556679999999999999999999999999
Q ss_pred CCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCE
Q psy6127 242 DDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDS 321 (515)
Q Consensus 242 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 321 (515)
|++|++||+.+++.+..+..+...+.+++|+|+++.++++ +.|+.|++||+++++....+..|...|.+++|+|++++
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g--~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATG--THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEE--CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEE--cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence 9999999999999999999999999999999999987765 47999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEE
Q psy6127 322 FISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTG 400 (515)
Q Consensus 322 l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~ 400 (515)
|++|+.||.|++||+++++.+..+. +...+.+++|+|++++|++|+.|++|++||++... .......|...|.+
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~ 253 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-----LAGTLSGHASWVLN 253 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC-----EEEEECCCSSCEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc-----eeEEEcCCCCceEE
Confidence 9999999999999999999988885 45678999999999999999999999999998754 34445678889999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 401 LKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 401 l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
++|+|++++|++++.|++|++||+.+++++..+..|.. .|.+++|+|++++|++++.||.|++||..
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~---~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD---QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS---CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC---cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999887554 49999999999999999999999999974
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.8e-43 Score=366.99 Aligned_cols=343 Identities=23% Similarity=0.376 Sum_probs=295.6
Q ss_pred hheeecccccccccccCCCCcCCCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE
Q psy6127 133 KIVAKSENMCNLTKLDLPYNKLGSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR 212 (515)
Q Consensus 133 ~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~ 212 (515)
+.+++++.++.| ++||. +++.+.++.+|...+.++.+.+... ...+++.++.+++|+. ..+
T Consensus 193 ~~l~~~~~d~~v----------~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~-----~l~~~~~d~~i~~w~~---~~~ 253 (577)
T 2ymu_A 193 QTIASASDDKTV----------KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-----TIASASDDKTVKLWNR---NGQ 253 (577)
T ss_dssp SCEEEEETTSEE----------EEECT-TSCEEEEEECCSSCEEEEEECTTSS-----CEEEEETTSCEEEECT---TSC
T ss_pred CEEEEEcCCCEE----------EEEeC-CCcEEEEEecCCCCEEEEEECCCCC-----EEEEEeCCCEEEEEeC---CCC
Confidence 578888888888 99995 6788888889877777777776543 2236677888999984 356
Q ss_pred eeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEE
Q psy6127 213 VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYL 292 (515)
Q Consensus 213 ~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vw 292 (515)
++..+.+|...|.+++|+|++++|++++.|+.|++||.. ++....+.+|...|.+++|+|++..+++++ .|+.|++|
T Consensus 254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~--~d~~i~~w 330 (577)
T 2ymu_A 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASAS--DDKTVKLW 330 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEE
T ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEe--CCCeEEEE
Confidence 778899999999999999999999999999999999964 778888999999999999999999887665 79999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECCCCCEEEEEECCCc
Q psy6127 293 SLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDPEGLAFAIGVNSDS 371 (515)
Q Consensus 293 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~ 371 (515)
|... +.+..+.+|...|.+++|+|+++.+++++.|+.|++||. +++.+..+ .+...+.+++|+|++++|++++.|+.
T Consensus 331 ~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 331 NRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp ETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred eCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 9764 456778899999999999999999999999999999995 45666655 45667999999999999999999999
Q ss_pred EEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecC
Q psy6127 372 IKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPD 451 (515)
Q Consensus 372 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 451 (515)
|++||... + .......|...|++++|+|+++++++++.|+.|++||. +++.+..+.+|.. .+.+++|+|+
T Consensus 409 v~~~~~~~-~-----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~---~v~~~~~spd 478 (577)
T 2ymu_A 409 VKLWNRNG-Q-----LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSS---SVRGVAFSPD 478 (577)
T ss_dssp EEEECTTC-C-----EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSS---CEEEEEECTT
T ss_pred EEEEeCCC-C-----EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCC---CEEEEEEcCC
Confidence 99999542 1 33334567889999999999999999999999999995 6677777776544 4999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCC
Q psy6127 452 SQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPT 511 (515)
Q Consensus 452 g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~ 511 (515)
+++|++++.|+.|++||. +++++..+.+ |.+.|++++|+|++++||+++.| +++|+.+
T Consensus 479 ~~~las~~~d~~i~iw~~-~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp SCEEEEEETTSEEEEEET-TSCEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEEeC-CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 999999999999999995 6889999988 99999999999999999999866 9999964
No 14
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-43 Score=349.65 Aligned_cols=304 Identities=16% Similarity=0.153 Sum_probs=232.9
Q ss_pred eeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeee----eEecCC
Q psy6127 193 HSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSD------DDQIIIYDCEQGTSK----NTINSK 262 (515)
Q Consensus 193 ~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~------dg~i~iwd~~~~~~~----~~~~~~ 262 (515)
+.++++.....|+ ++. ....+|...|++++|||||++||+||. |+.|++|+..++... .....|
T Consensus 20 ~~~~g~~~~~~w~--~p~----~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~ 93 (357)
T 4g56_B 20 FQSNGSSKGSAWG--RPV----TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT 93 (357)
T ss_dssp --------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC
T ss_pred EecCCCccccccC--CCC----CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC
Confidence 3455556677787 433 234579999999999999999999997 788999998876543 334568
Q ss_pred CCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeE----EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy6127 263 KYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVR----YFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQ 338 (515)
Q Consensus 263 ~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 338 (515)
...|.+++|+|++. ++++ +.|++|++||+.+++... ...+|.+.|++++|+|++++|++|+.|++|++||+++
T Consensus 94 ~~~V~~~~~s~d~~-~l~~--s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 94 EAGVTDVAWVSEKG-ILVA--SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp SSCEEEEEEETTTE-EEEE--ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEEcCCCC-EEEE--ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 88999999999975 4443 369999999999887543 3458999999999999999999999999999999999
Q ss_pred CCeEEEEe-cCCCeeEEEECCCCC-EEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCC-CCEEEEEEC
Q psy6127 339 PNNVGMIQ-LSGNKPIAAYDPEGL-AFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPD-GKLILVSTN 415 (515)
Q Consensus 339 ~~~~~~~~-~~~~~~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-~~~l~~~s~ 415 (515)
++.+..+. +...+.+++|+|++. .+++++.||.|++||+++++... ......+...+.+++|+|+ +.++++|+.
T Consensus 171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~---~~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT---RIDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC---BCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee---eeeeccccccccchhhhhcccceEEEeec
Confidence 99988885 456799999999875 78999999999999998765221 1122356678999999997 468899999
Q ss_pred CCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECC-
Q psy6127 416 GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDS-QFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNP- 493 (515)
Q Consensus 416 dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp- 493 (515)
|+.|++||+++++++..+.++.. .|.+++|+|++ ++|++|+.||+|+|||+++++++..+ + |.+.|++++|+|
T Consensus 248 d~~i~~wd~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~-H~~~V~~vafsP~ 322 (357)
T 4g56_B 248 TGNVSLVNIKNPDSAQTSAVHSQ---NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-S-HRDFVTGVAWSPL 322 (357)
T ss_dssp SSCEEEEESSCGGGCEEECCCSS---CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-C-CSSCEEEEEECSS
T ss_pred ccceeEEECCCCcEeEEEeccce---eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-C-CCCCEEEEEEeCC
Confidence 99999999999999988887554 49999999987 58999999999999999999888765 4 999999999999
Q ss_pred CCCEEEEeeCC--EEEEcCCCC
Q psy6127 494 KYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 494 ~~~~las~~~d--v~iW~~~~~ 513 (515)
++.+|++++.| +++|+++..
T Consensus 323 d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 323 DHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp STTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEcCCCeEEEEECCCC
Confidence 89999999855 999998754
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-42 Score=345.59 Aligned_cols=285 Identities=21% Similarity=0.384 Sum_probs=247.1
Q ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCC------------------ceeEEEEecCCCeEEE
Q psy6127 219 ENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKY------------------GVDLIKFTHSKTTAIH 280 (515)
Q Consensus 219 ~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~ 280 (515)
+|.+.|.+++|+|||++||+|+ ++++++|++.+++.+..+..+.. .|.+++|+|+++.+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999987 68999999999998887765532 3899999999998776
Q ss_pred EEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECC-C
Q psy6127 281 ASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDP-E 359 (515)
Q Consensus 281 ~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~-~ 359 (515)
++ .|+.|++||+.+++.+..+.+|...|.+++|+|+++.|++++.|++|++||++++++...+.....+.+++++| +
T Consensus 141 ~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GA--EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred Ec--CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 64 79999999999999999999999999999999999999999999999999999999988888888899999999 8
Q ss_pred CCEEEEEECCCcEEEEEeecCCCCCceee----ecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--------
Q psy6127 360 GLAFAIGVNSDSIKLYDVRSYDKGPFASF----KCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNG-------- 427 (515)
Q Consensus 360 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~-------- 427 (515)
++++++|+.|+.|++||++++.. ...+ .....|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCEEEEEcCCCcEEEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 99999999999999999987541 1111 112467889999999999999999999999999999764
Q ss_pred ----ceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECC------CCCE
Q psy6127 428 ----NCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNP------KYHM 497 (515)
Q Consensus 428 ----~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp------~~~~ 497 (515)
.+...+.+| ...|.+++|+|++++|++|+.||.|++||..+++++..+.+ |.+.|.+++|+| ++.+
T Consensus 297 ~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-h~~~v~~v~~~~~~~~~p~~~~ 372 (393)
T 1erj_A 297 PNSGTCEVTYIGH---KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVISVAVANGSSLGPEYNV 372 (393)
T ss_dssp ----CEEEEEECC---SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSCTTCTTCEE
T ss_pred CCCCcceEEEecc---cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-CCCCEEEEEecCCcCcCCCCCE
Confidence 334445544 44599999999999999999999999999999999999988 999999999986 6889
Q ss_pred EEEeeCC--EEEEcCCC
Q psy6127 498 LASACSN--MAFWIPTL 512 (515)
Q Consensus 498 las~~~d--v~iW~~~~ 512 (515)
|++|+.| +++|+++.
T Consensus 373 l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 373 FATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEETTSEEEEEEEEE
T ss_pred EEEECCCCcEEECcccc
Confidence 9999866 99999753
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-43 Score=355.14 Aligned_cols=290 Identities=21% Similarity=0.313 Sum_probs=260.3
Q ss_pred ccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCC
Q psy6127 164 SLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDD 243 (515)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg 243 (515)
...++.+|...|.++.|.+... +.++++.|+.+++|| ..++++.+++.+|.+.|++++|+|++++|++|+.|+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~-----~l~s~s~Dg~i~vwd--~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~ 172 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFS-----VMVSASEDATIKVWD--YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 172 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSS-----EEEEEESSSCEEEEE--TTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceEeecccCCcEEEEEEcCCCC-----EEEEEeCCCeEEEEE--CCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCC
Confidence 3456778887888888887643 445788899999999 778888999999999999999999999999999999
Q ss_pred eEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEE
Q psy6127 244 QIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFI 323 (515)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 323 (515)
+|++||+.+++++..+.+|...|.+++|+|+++.+++++ .|++|++||++++.++..+.+|...|.+++++|++.+|+
T Consensus 173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s--~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~ 250 (410)
T 1vyh_C 173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS--RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA 250 (410)
T ss_dssp CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEE
Confidence 999999999999999999999999999999999877654 799999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECCC--------------------CCEEEEEECCCcEEEEEeecCCC
Q psy6127 324 SGSYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDPE--------------------GLAFAIGVNSDSIKLYDVRSYDK 382 (515)
Q Consensus 324 s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~--------------------~~~l~~g~~dg~i~i~d~~~~~~ 382 (515)
+|+.|++|++||++++++...+ .+...+.+++|+|+ +.++++|+.|++|++||++++.
T Consensus 251 s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~- 329 (410)
T 1vyh_C 251 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM- 329 (410)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-
T ss_pred EEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-
Confidence 9999999999999999988887 45566899999996 6789999999999999998754
Q ss_pred CCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCC
Q psy6127 383 GPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDG 462 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg 462 (515)
.......|...|++++|+|++++|++++.|+.|++||+.+++++..+.+|.. .|++++|+|++.+|++|+.||
T Consensus 330 ----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 330 ----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH---FVTSLDFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp ----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS---CEEEEEECSSSSCEEEEETTS
T ss_pred ----eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC---cEEEEEEcCCCCEEEEEeCCC
Confidence 4444457888999999999999999999999999999999999998887654 499999999999999999999
Q ss_pred cEEEEECC
Q psy6127 463 QVHIWNAE 470 (515)
Q Consensus 463 ~I~iwd~~ 470 (515)
+|++|+++
T Consensus 403 ~i~vW~~r 410 (410)
T 1vyh_C 403 TVKVWECR 410 (410)
T ss_dssp EEEEEC--
T ss_pred cEEEEeCC
Confidence 99999863
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=339.29 Aligned_cols=297 Identities=21% Similarity=0.338 Sum_probs=245.3
Q ss_pred eeEeeeeccccCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee---EecCCCCceeEEEEecCCCeEEEEEeeC
Q psy6127 210 SYRVAKVFRENTD-KINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKN---TINSKKYGVDLIKFTHSKTTAIHASTKV 285 (515)
Q Consensus 210 ~~~~~~~~~~h~~-~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~s~~~ 285 (515)
..+++.++++|.+ .|.+++|+|+|++||+|+.|++|+|||+.+++... ...+|...|.+++|+|+++.+++++ .
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s--~ 81 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS--F 81 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE--T
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE--C
Confidence 3567888999988 99999999999999999999999999998876432 2368999999999999999877665 7
Q ss_pred CCeEEEEECCCC--eeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCe---EEEE-ecCCCeeEEEECCC
Q psy6127 286 DATLRYLSLHDN--KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN---VGMI-QLSGNKPIAAYDPE 359 (515)
Q Consensus 286 d~~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~-~~~~~~~~~~~s~~ 359 (515)
|+++++||+.++ +.+..+.+|...|.+++|+|++++|++|+.|++|++||++++.. +..+ .+...+.+++|+|+
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence 999999998876 46788999999999999999999999999999999999987754 3333 34566899999999
Q ss_pred CCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------------
Q psy6127 360 GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNG------------ 427 (515)
Q Consensus 360 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~------------ 427 (515)
+++|++++.|++|++||.+.... ........|...|.+++|+|++++|++++.|++|++||....
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~ 238 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEEDDW---VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD 238 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred CCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence 99999999999999999986431 122334678889999999999999999999999999996332
Q ss_pred ---ceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCe--------EEEEEcCCCCCCeEEEEECCCC-
Q psy6127 428 ---NCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGY--------KVCVLDGDHPSAVQSLQFNPKY- 495 (515)
Q Consensus 428 ---~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~h~~~V~~l~~sp~~- 495 (515)
+++..+.+ .+...|.+++|+|++..|++++.|+.|++|+...+. ........|.+.|++++|+|++
T Consensus 239 ~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 239 PSWKCICTLSG--FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP 316 (345)
T ss_dssp CEEEEEEEECS--SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred CccceeEEecC--CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence 22233332 144569999999999999999999999999986542 2222323499999999999987
Q ss_pred CEEEEeeCC--EEEEcCCCC
Q psy6127 496 HMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 496 ~~las~~~d--v~iW~~~~~ 513 (515)
.+||+++.| +++|++...
T Consensus 317 ~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 317 GLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp TEEEEEETTSCEEEEEECC-
T ss_pred eEEEEcCCCCcEEEEEecCC
Confidence 499999865 999998754
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.6e-42 Score=336.36 Aligned_cols=291 Identities=20% Similarity=0.265 Sum_probs=241.3
Q ss_pred eeEeeeeccccCCcEEEEEE-----cC-CCCEEEEEeCCCeEEEEECCCC-------eeeeEecCCCCceeEEEEecCCC
Q psy6127 210 SYRVAKVFRENTDKINSLDY-----SS-DGSLLISCSDDDQIIIYDCEQG-------TSKNTINSKKYGVDLIKFTHSKT 276 (515)
Q Consensus 210 ~~~~~~~~~~h~~~I~~l~~-----sp-d~~~lasgs~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~ 276 (515)
..++..++++|.+.|++++| +| ++++|++|+.|++|++||+.++ .+...+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 45667889999999999999 77 9999999999999999998753 45677899999999999999998
Q ss_pred eEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE---ecCCCeeE
Q psy6127 277 TAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI---QLSGNKPI 353 (515)
Q Consensus 277 ~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~ 353 (515)
.++++ +.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+......... .+...+.+
T Consensus 90 ~l~s~--s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISS--SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEE--ETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEE--cCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 77755 48999999999999999999999999999999999999999999999999999843322222 34456889
Q ss_pred EEECCCC----------CEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEE
Q psy6127 354 AAYDPEG----------LAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFD 423 (515)
Q Consensus 354 ~~~s~~~----------~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd 423 (515)
++|+|++ .++++++.|+.|++||... ........|...|.+++|+|+|++|++|+.|+.|++||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 9999987 7999999999999999432 12333456788999999999999999999999999999
Q ss_pred CCC-CceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE--EEcC----------CCCCCeEEEE
Q psy6127 424 AFN-GNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVC--VLDG----------DHPSAVQSLQ 490 (515)
Q Consensus 424 ~~~-~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~--~~~~----------~h~~~V~~l~ 490 (515)
+.. ......+. ....+.+++|+|++.+++++ .|+.|++||+.+++... .+.. .|...|++++
T Consensus 242 ~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 316 (343)
T 2xzm_R 242 ILNLTYPQREFD----AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLA 316 (343)
T ss_dssp SSCCSSCSEEEE----CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEE
T ss_pred CCCCcccceeec----CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEE
Confidence 954 33333332 12348999999999988765 57789999998776443 3331 3788999999
Q ss_pred ECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 491 FNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 491 ~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
|+|++++|++|+.| +++|+++.+
T Consensus 317 ~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 317 WNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp ECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred ECCCCCeEEEecCCceEEEEEEEcc
Confidence 99999999999865 999998643
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.4e-42 Score=337.35 Aligned_cols=284 Identities=19% Similarity=0.230 Sum_probs=228.7
Q ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------CeeeeEecCCCCceeEEEEecCCCeEEEEEeeCC
Q psy6127 218 RENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQ-----------GTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVD 286 (515)
Q Consensus 218 ~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d 286 (515)
..|...|.+++|+|||++|++++ |+++++||... .........+...|.+++|+|++ .++++ +.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~--s~d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVA--SDS 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEE--ETT
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEE--ECC
Confidence 46788899999999999999888 67788886321 11111223355789999999986 45444 479
Q ss_pred CeEEEEECCCCeeeEE----ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCC-
Q psy6127 287 ATLRYLSLHDNKYVRY----FPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEG- 360 (515)
Q Consensus 287 ~~v~vwd~~~~~~~~~----~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~- 360 (515)
|+|++||+++++.... +.+|.+.|++++|+|++++|++|+.|++|++||+++++.+..+. +...+.+++|+|++
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC
Confidence 9999999998876543 45899999999999999999999999999999999999998885 56779999999988
Q ss_pred CEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCceeEEeeccccC
Q psy6127 361 LAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPD-GKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNN 439 (515)
Q Consensus 361 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 439 (515)
.++++++.|++|++||+++++. ...+ ....+...+.+++|+|+ ++++++|+.||.|++||+++++++..+.+|..
T Consensus 183 ~~l~s~s~D~~v~iwd~~~~~~--~~~~-~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~- 258 (344)
T 4gqb_B 183 SVFLSCSEDNRILLWDTRCPKP--ASQI-GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ- 258 (344)
T ss_dssp TEEEEEETTSCEEEEETTSSSC--EEEC-C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-
T ss_pred Cceeeeccccccccccccccce--eeee-ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-
Confidence 4789999999999999987652 1111 12345567889999995 56889999999999999999999999887654
Q ss_pred CCCCEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCC-EEEEeeCC--EEEEcCCCC
Q psy6127 440 NASPLEATFTPDS-QFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYH-MLASACSN--MAFWIPTLS 513 (515)
Q Consensus 440 ~~~i~~~~~sp~g-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~las~~~d--v~iW~~~~~ 513 (515)
.|++++|+|++ ++|++|+.|++|+|||+.++++.. +.+ |.+.|++++|+|++. ++++++.| +++|+++..
T Consensus 259 --~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 259 --CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp --CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred --CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 49999999998 589999999999999999988654 566 999999999999886 56777754 999998754
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-41 Score=334.01 Aligned_cols=291 Identities=20% Similarity=0.297 Sum_probs=253.0
Q ss_pred ccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeC
Q psy6127 162 LHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSD 241 (515)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~ 241 (515)
.+...++.+|...|.++.|.+... +.++++.|+.+++|| ....+....+..|...|.+++|+|++++|++|+.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-----~l~s~s~Dg~v~iWd--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 117 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-----LLLSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-----EEEEEETTTEEEEEE--TTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred chhheeecCCCCceEEEEECCCCC-----EEEEEeCCCcEEEEE--CCCCCcceEeecCCccEEEEEECCCCCEEEEEeC
Confidence 345567889988788888876543 344788899999999 7778888999999999999999999999999999
Q ss_pred CCeEEEEECCCC----eeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcC
Q psy6127 242 DDQIIIYDCEQG----TSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSP 317 (515)
Q Consensus 242 dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 317 (515)
|+.|++|++.++ .....+.+|...|.++.|++++. +++ ++.|++|++||+++++.+..+.+|.+.|.+++|+|
T Consensus 118 d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s--~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 194 (340)
T 1got_B 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVT--SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194 (340)
T ss_dssp TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEE--EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEE--EECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence 999999999875 35567889999999999999874 443 35799999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCc
Q psy6127 318 VDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGC 396 (515)
Q Consensus 318 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 396 (515)
+++++++|+.|++|++||++++.+...+. +...+.+++|+|++++|++|+.||+|++||++.... ...+ ....+..
T Consensus 195 ~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~-~~~~~~~ 271 (340)
T 1got_B 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE--LMTY-SHDNIIC 271 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEE-CCTTCCS
T ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE--EEEE-ccCCccc
Confidence 99999999999999999999999988884 556799999999999999999999999999987431 1111 1223445
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEE
Q psy6127 397 EWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWN 468 (515)
Q Consensus 397 ~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd 468 (515)
.|++++|+|+|+++++|+.|+.|++||+.+++.+..+.+|.. .|.+++|+|+|.+|++|+.||.|++||
T Consensus 272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~---~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN---RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS---CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC---cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 799999999999999999999999999999999888887554 499999999999999999999999997
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-41 Score=329.70 Aligned_cols=293 Identities=15% Similarity=0.236 Sum_probs=232.5
Q ss_pred eeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeeEe-cC-CCCceeEEEEecCCCeEEEEEeeC
Q psy6127 210 SYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQG--TSKNTI-NS-KKYGVDLIKFTHSKTTAIHASTKV 285 (515)
Q Consensus 210 ~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~s~~~ 285 (515)
..++++++++|.++|++++|+|+ +||+|+.|++|++||+.++ +....+ .. |...|.+++|+|+++.+++++ .
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s--~ 78 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS--F 78 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE--T
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe--C
Confidence 45677889999999999999998 9999999999999999875 445556 44 999999999999998776654 7
Q ss_pred CCeEEEEECCC-------CeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----CeEEEE-ecCCCeeE
Q psy6127 286 DATLRYLSLHD-------NKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQP----NNVGMI-QLSGNKPI 353 (515)
Q Consensus 286 d~~v~vwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~-~~~~~~~~ 353 (515)
|++|++||+.. .+.+..+.+|...|.+++|+|++++|++|+.|++|++||++.. +++..+ .+...+.+
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 99999999853 3567788999999999999999999999999999999999532 344555 45567999
Q ss_pred EEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCC--CCEEEEEECCCcEEEEECCCC----
Q psy6127 354 AAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPD--GKLILVSTNGSIIRLFDAFNG---- 427 (515)
Q Consensus 354 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~--~~~l~~~s~dg~i~iwd~~~~---- 427 (515)
++|+|++.+|++++.|++|++||.+.... ........|...|.+++|+|+ +.++++++.|++|++||+..+
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~ 235 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDW---ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCe---eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence 99999999999999999999999876421 134445678889999999998 778999999999999998654
Q ss_pred ----ceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEEEcCCCCC-CeEEEEECC--CCCEE
Q psy6127 428 ----NCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGY--KVCVLDGDHPS-AVQSLQFNP--KYHML 498 (515)
Q Consensus 428 ----~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~-~V~~l~~sp--~~~~l 498 (515)
.+...+.. .+...|.+++|++++ +|++++.||.|++||..+++ ........|.. .|++++|+| ++.+|
T Consensus 236 ~~~~~~~~~~~~--~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 236 QQEWVCEAILPD--VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTIL 312 (330)
T ss_dssp CEEEEEEEECCS--CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCE
T ss_pred cceeEEeeeccc--ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEE
Confidence 22333322 244569999999765 78999999999999998874 34444333876 899999999 78999
Q ss_pred EEeeCC--EEEEcCCC
Q psy6127 499 ASACSN--MAFWIPTL 512 (515)
Q Consensus 499 as~~~d--v~iW~~~~ 512 (515)
|+++.| +++|+++.
T Consensus 313 as~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 313 ATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEETTSEEEEEEC--
T ss_pred EEecCCCcEEEEEecc
Confidence 999865 99999864
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-41 Score=337.87 Aligned_cols=337 Identities=12% Similarity=0.152 Sum_probs=273.8
Q ss_pred CCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEcccee----eeeE------eeeeccc-----
Q psy6127 155 GSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLV----RSYR------VAKVFRE----- 219 (515)
Q Consensus 155 ~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~----~~~~------~~~~~~~----- 219 (515)
.+|+............|...+.++.+.+..... ++ +++.++.+++|+ + ..++ ....+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~---l~-~~~~dg~i~iw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 1r5m_A 28 SSDDLDGFVKILKEIVKLDNIVSSTWNPLDESI---LA-YGEKNSVARLAR--IVETDQEGKKYWKLTIIAELRHPFALS 101 (425)
T ss_dssp ------CCCEECEEEEECSCCSEEEECSSCTTE---EE-EEETBTEEEEEE--EEEC------CEEEEEEEEEECCCCCC
T ss_pred ccccchhhhhheeeeeccCceEEEEECCCCCcE---EE-EecCCceEEEEE--EecccCCcccccccccccccccccccc
Confidence 567776554443333333456677776654311 33 667789999999 6 5555 3333333
Q ss_pred -----cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEEC
Q psy6127 220 -----NTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL 294 (515)
Q Consensus 220 -----h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~ 294 (515)
|.+.|++++|+|++++|++|+.||.|++|| .+++....+..|...|.+++|+|+++.+++++ .|+.|++||+
T Consensus 102 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~ 178 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMD--VENVTILWNV 178 (425)
T ss_dssp ------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEE--TTCCEEEEET
T ss_pred ccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEe--cCCeEEEEEC
Confidence 788999999999999999999999999999 67888899999999999999999999887665 7999999999
Q ss_pred CCCeeeEEecCCCCC---------------eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECC
Q psy6127 295 HDNKYVRYFPGHVRK---------------VSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDP 358 (515)
Q Consensus 295 ~~~~~~~~~~~h~~~---------------v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~ 358 (515)
.+++.+..+..|... +.+++|+|+ ..+++++.||.|++||+++++....+ .+...+.+++|+|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND 257 (425)
T ss_dssp TTTEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET
T ss_pred CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC
Confidence 999999999888777 999999997 46889999999999999999888777 4556789999999
Q ss_pred CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecccc
Q psy6127 359 EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLN 438 (515)
Q Consensus 359 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 438 (515)
+++++++++.|+.|++||++..+ .......+...+.+++|+|++ ++++++.|+.|++||+++++.+..+..+.
T Consensus 258 ~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~- 330 (425)
T 1r5m_A 258 TNKLLLSASDDGTLRIWHGGNGN-----SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG- 330 (425)
T ss_dssp TTTEEEEEETTSCEEEECSSSBS-----CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT-
T ss_pred CCCEEEEEcCCCEEEEEECCCCc-----cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC-
Confidence 99999999999999999998754 223334677899999999999 99999999999999999999888887644
Q ss_pred CCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCe--------------------EEEEEcCCCCC--CeEEEEECCCCC
Q psy6127 439 NNASPLEATFTPDSQFVASGSTDGQVHIWNAERGY--------------------KVCVLDGDHPS--AVQSLQFNPKYH 496 (515)
Q Consensus 439 ~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~--------------------~~~~~~~~h~~--~V~~l~~sp~~~ 496 (515)
..+.+++|+|++++|++++.||.|++||+.+++ ++..+.. |.. .|++++|+|+++
T Consensus 331 --~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 331 --VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS-SQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp --CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECC-TTCCCCEEEEEECTTSS
T ss_pred --ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcC-cccCCceEEEEccCCCc
Confidence 349999999999999999999999999999888 8888988 765 999999999999
Q ss_pred EEEEeeCC--EEEEcCC
Q psy6127 497 MLASACSN--MAFWIPT 511 (515)
Q Consensus 497 ~las~~~d--v~iW~~~ 511 (515)
+|++++.+ +++|+++
T Consensus 408 ~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 408 KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEESSSCCEEEECC
T ss_pred eEEEEecCceEEEEeec
Confidence 99998855 9999986
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.6e-41 Score=323.47 Aligned_cols=290 Identities=15% Similarity=0.201 Sum_probs=249.4
Q ss_pred ccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCC
Q psy6127 164 SLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDD 243 (515)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg 243 (515)
...++.+|...|.++.|.|... +.++++.|+.+++|| ..+.+++..+.+|..+|.+++|+|++++|++|+.|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~-----~l~s~~~dg~v~lWd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEP-----WVLTTLYSGRVELWN--YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-----EEEEEETTSEEEEEE--TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred eEEeecCCCCceEEEEECCCCC-----EEEEEcCCCcEEEEE--CCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCC
Confidence 3456778877788888877653 334778899999999 778888999999999999999999999999999999
Q ss_pred eEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCC-eeeEEecCCCCCeEEEEEcC-CCCE
Q psy6127 244 QIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDN-KYVRYFPGHVRKVSSLNLSP-VDDS 321 (515)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~ 321 (515)
+|++||+.+++.+..+.+|...|.+++|+|+++.+++++ .|++|++||++++ .....+.+|...|.+++|+| ++..
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE--TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEEC--CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence 999999999999999999999999999999999777554 8999999999887 55678899999999999999 5789
Q ss_pred EEEEeCCCcEEEEEcCCCCeEEEEe--cCCCeeEEEECC--CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcC
Q psy6127 322 FISGSYDKTVRVWDLRQPNNVGMIQ--LSGNKPIAAYDP--EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCE 397 (515)
Q Consensus 322 l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 397 (515)
|++|+.|++|++||++++.....+. +...+..+.++| ++.++++|+.|++|++||+++++ .......|...
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----~~~~~~~h~~~ 230 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVATLEGHMSN 230 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-----EEEEEECCSSC
T ss_pred EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-----cceeeCCCCCC
Confidence 9999999999999999887766553 335578888876 77899999999999999998754 44445678889
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCC--EEEEEeCCCcEEEEECCC
Q psy6127 398 WTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQ--FVASGSTDGQVHIWNAER 471 (515)
Q Consensus 398 i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~--~l~sgs~dg~I~iwd~~~ 471 (515)
|.+++|+|++++|++|+.||+|++||+.+++..+.+..+.. .+.+++|+|++. ++++|+.|| +.+|++..
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE---RSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS---SEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc---cEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 99999999999999999999999999999999998876544 489999999875 578777665 77888754
No 24
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-40 Score=351.24 Aligned_cols=354 Identities=15% Similarity=0.164 Sum_probs=301.8
Q ss_pred hheeecccccccccccCCCCcCCCcchhhc----cccccccCCcee-EEEEEEee--ccccceeeeeeeCCCCcEEEEcc
Q psy6127 133 KIVAKSENMCNLTKLDLPYNKLGSWDFELL----HSLSSLESPHFV-SLFVTFVS--RVLTMAASLAHSRSSRTITKCSE 205 (515)
Q Consensus 133 ~~la~~~~~~~i~~~~~~~n~~~~wd~~~~----~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~l~~s~~~~~~i~~wd 205 (515)
++||++. ++.| .+||..++ +.+..+.+|... +.++.+.+ ... +.++++.++.+++|+
T Consensus 31 ~~l~~~~-~~~v----------~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-----~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 31 NAIAYPC-GKSA----------FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-----YLCSGDESGKVIVWG 94 (615)
T ss_dssp TEEEEEE-TTEE----------EEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-----EEEEEETTSEEEEEE
T ss_pred CEEEEec-CCeE----------EEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-----EEEEecCCCEEEEEe
Confidence 5677766 5677 99999999 899999999877 88888887 432 334677789999999
Q ss_pred ceee--------eeEeeeeccccCCcEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeeEecCCCCceeEEEEec
Q psy6127 206 NLVR--------SYRVAKVFRENTDKINSLDYSSDGSLLISCSDD----DQIIIYDCEQGTSKNTINSKKYGVDLIKFTH 273 (515)
Q Consensus 206 ~~~~--------~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 273 (515)
+. ..++...+.+|...|.+++|+|++++|++++.+ +.|++|| .++....+.+|...|.+++|+|
T Consensus 95 --~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 95 --WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp --EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS
T ss_pred --CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECC
Confidence 65 447888999999999999999999999999988 6888888 6778889999999999999999
Q ss_pred CCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCeEEEE----
Q psy6127 274 SKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVR---KVSSLNLSPV-DDSFISGSYDKTVRVWDLRQPNNVGMI---- 345 (515)
Q Consensus 274 ~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~---~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~---- 345 (515)
+++.+++.+ +.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.||.|++||+++++.+..+
T Consensus 171 ~~~~~l~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 249 (615)
T 1pgu_A 171 SRPMRSMTV-GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 249 (615)
T ss_dssp SSSCEEEEE-ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT
T ss_pred CCCcEEEEE-eCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccc
Confidence 998443333 4799999999999999999999999 9999999999 999999999999999999999999988
Q ss_pred -ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCC-----C-----------------------------------
Q psy6127 346 -QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKG-----P----------------------------------- 384 (515)
Q Consensus 346 -~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-----~----------------------------------- 384 (515)
.+...+.+++|+ +++++++++.|+.|++||+++++.. .
T Consensus 250 ~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 250 EPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp BCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred cccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 566779999999 9999999999999999997632100 0
Q ss_pred ---cee--------------------------------------------------------------------------
Q psy6127 385 ---FAS-------------------------------------------------------------------------- 387 (515)
Q Consensus 385 ---~~~-------------------------------------------------------------------------- 387 (515)
...
T Consensus 329 ~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 408 (615)
T 1pgu_A 329 DEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQ 408 (615)
T ss_dssp EEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSC
T ss_pred CcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCC
Confidence 000
Q ss_pred ----------------------------------------------------------------------e--ecCCCCC
Q psy6127 388 ----------------------------------------------------------------------F--KCPGERG 395 (515)
Q Consensus 388 ----------------------------------------------------------------------~--~~~~~~~ 395 (515)
. .....|.
T Consensus 409 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 488 (615)
T 1pgu_A 409 PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR 488 (615)
T ss_dssp EEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCS
T ss_pred ceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCcc
Confidence 0 1123456
Q ss_pred cCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEec----------CCCEEEEEeCCCcEE
Q psy6127 396 CEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTP----------DSQFVASGSTDGQVH 465 (515)
Q Consensus 396 ~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp----------~g~~l~sgs~dg~I~ 465 (515)
..|++++|+|++++|++++.|+.|++||+.+++.+..+.+. +...|++++|+| ++++|++++.||.|+
T Consensus 489 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 489 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC--CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence 78899999999999999999999999999999988877651 334599999999 999999999999999
Q ss_pred EEECCCC-eEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCC
Q psy6127 466 IWNAERG-YKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTL 512 (515)
Q Consensus 466 iwd~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~ 512 (515)
+||+.++ +++..+.+ |.+.|++++|+|++. |++++.| +++|+++.
T Consensus 567 iw~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 567 IYSVKRPMKIIKALNA-HKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEESSCTTCCEEETTS-STTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEECCCCceechhhhc-CccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999998 78888887 999999999999999 9998865 99999875
No 25
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.4e-40 Score=320.29 Aligned_cols=295 Identities=18% Similarity=0.285 Sum_probs=252.8
Q ss_pred eeeeEeeeeccccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe-----eeeEecCCCCceeEEEEecCCCeEEEE
Q psy6127 208 VRSYRVAKVFRENTDKINSLDYSSD-GSLLISCSDDDQIIIYDCEQGT-----SKNTINSKKYGVDLIKFTHSKTTAIHA 281 (515)
Q Consensus 208 ~~~~~~~~~~~~h~~~I~~l~~spd-~~~lasgs~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~ 281 (515)
.+..++..+|+||++.|++++|+|+ +++|||||.||+|+|||+.+++ +...+.+|...|.+++|+|++..++++
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 5566778899999999999999997 6899999999999999987643 466789999999999999999987766
Q ss_pred EeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE--ecCCCeeEEEECCC
Q psy6127 282 STKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI--QLSGNKPIAAYDPE 359 (515)
Q Consensus 282 s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~s~~ 359 (515)
+ .|+.|++|+............+...+....++++++.|++++.|+.+++||+......... .+...+..++|+++
T Consensus 105 ~--~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 105 S--WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp E--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred c--ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 5 7999999999999999888889999999999999999999999999999999876554433 33456788899876
Q ss_pred C--CEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccc
Q psy6127 360 G--LAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVL 437 (515)
Q Consensus 360 ~--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 437 (515)
+ ..+++++.|+.|++||+++.+ .......|...|++++|+|++++|++++.|+.|++||+++++++..+..+
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~- 256 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCK-----LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG- 256 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-
T ss_pred CCCcEEEEEcCCCEEEEEECCCCc-----eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-
Confidence 4 578899999999999998754 44445678889999999999999999999999999999999998888754
Q ss_pred cCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcC--------CCCCCeEEEEECCCCCEEEEeeCC--EEE
Q psy6127 438 NNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDG--------DHPSAVQSLQFNPKYHMLASACSN--MAF 507 (515)
Q Consensus 438 ~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------~h~~~V~~l~~sp~~~~las~~~d--v~i 507 (515)
..+.+++|+|++.+++ ++.|+.|++||++++..+..+.. .|...|++++|+|++++|++|+.| ++|
T Consensus 257 ---~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 257 ---DIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp ---SCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ---ceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 3489999999887655 55799999999999888776642 388899999999999999999865 999
Q ss_pred EcCCCCC
Q psy6127 508 WIPTLSA 514 (515)
Q Consensus 508 W~~~~~~ 514 (515)
|+++.+.
T Consensus 333 W~~~tGt 339 (340)
T 4aow_A 333 WQVTIGT 339 (340)
T ss_dssp EEEEC--
T ss_pred EeCCCcC
Confidence 9998754
No 26
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.9e-40 Score=322.08 Aligned_cols=297 Identities=19% Similarity=0.226 Sum_probs=248.7
Q ss_pred ccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEcccee---eeeEeeeeccccCCcEEEEEEcCCCCEEEE
Q psy6127 162 LHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLV---RSYRVAKVFRENTDKINSLDYSSDGSLLIS 238 (515)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~---~~~~~~~~~~~h~~~I~~l~~spd~~~las 238 (515)
.....++++|...|.++.+.+.... +.++++.|+.+++|+-.- +...++..+++|...|.+++|+|++++|++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~----~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPN----LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTT----EEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCcc----EEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEE
Confidence 4455678999887888888754311 345888999999998221 234567889999999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCC
Q psy6127 239 CSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPV 318 (515)
Q Consensus 239 gs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 318 (515)
|+.|++|++||+.+++....+.+|...|.+++|+|++..+++++ .|++|++||++ ++.+..+.+|...|.+++|.|.
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEE--TTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC
T ss_pred EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECC-CCeEEEEeccCCcEEEEEEccC
Confidence 99999999999999999999999999999999999998777654 79999999996 5677888999999999999985
Q ss_pred ------CCEEEEEeCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecC
Q psy6127 319 ------DDSFISGSYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCP 391 (515)
Q Consensus 319 ------~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 391 (515)
+..+++++.|+.|++||+++++....+ .+...+.+++|+|++++|++++.||.|++||+++.+ .....
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~-----~~~~~ 234 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK-----AMYTL 234 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-----EEEEE
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEe
Confidence 448999999999999999999887776 456679999999999999999999999999998753 22222
Q ss_pred CCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccc-----cCCCCCEEEEEecCCCEEEEEeCCCcEEE
Q psy6127 392 GERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVL-----NNNASPLEATFTPDSQFVASGSTDGQVHI 466 (515)
Q Consensus 392 ~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~i~~~~~sp~g~~l~sgs~dg~I~i 466 (515)
. ....+.+++|+|++.++++++.+ .+++|++..+.....+..+. .+...+.+++|+|||++|++|+.||.|++
T Consensus 235 ~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~v 312 (319)
T 3frx_A 235 S-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312 (319)
T ss_dssp E-CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred c-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEE
Confidence 2 23579999999999999988765 59999998887776665321 23445889999999999999999999999
Q ss_pred EECCCC
Q psy6127 467 WNAERG 472 (515)
Q Consensus 467 wd~~~~ 472 (515)
||+.++
T Consensus 313 Wd~~t~ 318 (319)
T 3frx_A 313 WQVMTA 318 (319)
T ss_dssp EEEEEC
T ss_pred EEEeec
Confidence 998764
No 27
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-41 Score=367.00 Aligned_cols=352 Identities=14% Similarity=0.144 Sum_probs=272.3
Q ss_pred hhheeecccccccccccCCCCcCCCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeee
Q psy6127 132 LKIVAKSENMCNLTKLDLPYNKLGSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSY 211 (515)
Q Consensus 132 ~~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~ 211 (515)
-++||+|+.+|.| ++||..+++.+..+. |...|.++.|.+ .. +.++++.|+.+++|| +...
T Consensus 29 g~~lAsgs~Dg~I----------~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~-----~L~S~s~D~~v~lWd--~~~~ 89 (902)
T 2oaj_A 29 QNLLAIATVTGEV----------HIYGQQQVEVVIKLE-DRSAIKEMRFVK-GI-----YLVVINAKDTVYVLS--LYSQ 89 (902)
T ss_dssp TTEEEEEETTSEE----------EEECSTTCEEEEECS-SCCCEEEEEEET-TT-----EEEEEETTCEEEEEE--TTTC
T ss_pred CCEEEEEeCCCEE----------EEEeCCCcEEEEEcC-CCCCEEEEEEcC-CC-----EEEEEECcCeEEEEE--CCCC
Confidence 3689999999999 999998887766654 444577777776 21 234777899999999 7777
Q ss_pred EeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-----------eEecCCCCceeEEEEecCCCeEEE
Q psy6127 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSK-----------NTINSKKYGVDLIKFTHSKTTAIH 280 (515)
Q Consensus 212 ~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~ 280 (515)
+++.++. |.+.|++++|+|++++|++|+.||+|++||+.+++.. ..+.+|..+|.+++|+|++...++
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 8888775 7789999999999999999999999999999988754 234678899999999997644444
Q ss_pred EEeeCCCeEEEEECCCCeeeEEecCC------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeE
Q psy6127 281 ASTKVDATLRYLSLHDNKYVRYFPGH------------------VRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNV 342 (515)
Q Consensus 281 ~s~~~d~~v~vwd~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 342 (515)
+ ++.|+.| +||+++++.+..+..| ...|++++|+|+|++|++|+.||+|++||+++++++
T Consensus 169 ~-g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 169 I-SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp E-ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred E-EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 3 3579999 9999999998888766 578999999999999999999999999999776543
Q ss_pred EEEe------c-------------CCCeeEEEE-----------------------------------------------
Q psy6127 343 GMIQ------L-------------SGNKPIAAY----------------------------------------------- 356 (515)
Q Consensus 343 ~~~~------~-------------~~~~~~~~~----------------------------------------------- 356 (515)
.... + ...+.+++|
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 3100 0 001112222
Q ss_pred --------------------------------------------------------------------------------
Q psy6127 357 -------------------------------------------------------------------------------- 356 (515)
Q Consensus 357 -------------------------------------------------------------------------------- 356 (515)
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence
Q ss_pred -------------------------------------CCCCCEEEEEECCCcEEEEEeecCCCCCceeeec------CCC
Q psy6127 357 -------------------------------------DPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKC------PGE 393 (515)
Q Consensus 357 -------------------------------------s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~------~~~ 393 (515)
+|+++.+++|+.|++|++||+..+.......+.. ...
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 3445566677777777777766543211011110 125
Q ss_pred CCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc---------------------------------------------
Q psy6127 394 RGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGN--------------------------------------------- 428 (515)
Q Consensus 394 ~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~--------------------------------------------- 428 (515)
|...|.+++|+|++++||+|+.||+|++||+.+++
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 67789999999999999999999999999997662
Q ss_pred eeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE--E---c-CCCCCCeEEEEEC-----CCC--
Q psy6127 429 CVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCV--L---D-GDHPSAVQSLQFN-----PKY-- 495 (515)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~--~---~-~~h~~~V~~l~~s-----p~~-- 495 (515)
++..+.+ +...|++++|+||| +||+|+.|++|++||++++..+.. + . + |.+.|++++|+ |||
T Consensus 567 ~~~~l~~---h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~g-h~~~V~sv~Fs~~~~~~Dg~~ 641 (902)
T 2oaj_A 567 PSTAVHA---NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGA-QSACVTCIEFVIMEYGDDGYS 641 (902)
T ss_dssp EEEEECC---CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSS-CCCCEEEEEEEEEECTTSSSE
T ss_pred eeEEEEc---CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccc-cccceEEEEEEEEecCCCCCc
Confidence 2344444 45569999999999 999999999999999988877642 2 2 4 89999999999 885
Q ss_pred -CEEEEeeCC--EEEEcC
Q psy6127 496 -HMLASACSN--MAFWIP 510 (515)
Q Consensus 496 -~~las~~~d--v~iW~~ 510 (515)
++|++++.| +++|++
T Consensus 642 ~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 642 SILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEEEETTSEEEEEEE
T ss_pred ceEEEEEecCCcEEEEEE
Confidence 899999865 999998
No 28
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-40 Score=327.08 Aligned_cols=291 Identities=22% Similarity=0.315 Sum_probs=252.2
Q ss_pred cccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCC
Q psy6127 163 HSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDD 242 (515)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~d 242 (515)
+...++++|...|.++.|.+... ..++++.|+.+++|| ..+.+..+.+..|...|.+++|+|+|++|++|+.|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-----~l~s~s~Dg~v~vWd--~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d 127 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-----RIVSSSQDGKVIVWD--SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-----EEEEEETTSEEEEEE--TTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTT
T ss_pred EEEEEecCCCCeEEEEEECCCCC-----EEEEEeCCCeEEEEE--CCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 45567889988888888887543 345888999999999 66777888889999999999999999999999999
Q ss_pred CeEEEEECCCC------eeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEc
Q psy6127 243 DQIIIYDCEQG------TSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLS 316 (515)
Q Consensus 243 g~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~ 316 (515)
+.+++|++... .....+..|...|.+++|+|++..+++++ .|++|++||+++++.+..+.+|...|.+++|+
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s--~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS--GDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence 99999998643 34566778999999999999999887665 79999999999999999999999999999998
Q ss_pred C--CCCEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCC
Q psy6127 317 P--VDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGE 393 (515)
Q Consensus 317 ~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 393 (515)
| +++.|++|+.||+|++||+++++++..+. +...+.+++|+|+++.+++|+.|++|++||++.... . .......
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~--~-~~~~~~~ 282 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE--V-AIYSKES 282 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--E-EEECCTT
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--E-EEEcCCC
Confidence 8 46899999999999999999999988884 556799999999999999999999999999987431 1 1111223
Q ss_pred CCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEE
Q psy6127 394 RGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWN 468 (515)
Q Consensus 394 ~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd 468 (515)
+...+.+++|+|+++++++|+.|+.|++||+.+++.+..+.+|.. .|.+++|+|+|++|++|+.||+|++|+
T Consensus 283 ~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~---~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN---RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS---CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC---cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 345788999999999999999999999999999998888877554 499999999999999999999999996
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-41 Score=336.51 Aligned_cols=309 Identities=17% Similarity=0.235 Sum_probs=258.1
Q ss_pred CCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCC
Q psy6127 155 GSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGS 234 (515)
Q Consensus 155 ~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~ 234 (515)
..|+..+.....++.+|...|.++.|.+... +.++++.|+.+++|| ..+.+....+++|...|.+++|+|+|+
T Consensus 49 ~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~-----~l~s~s~D~~v~iWd--~~~~~~~~~~~~h~~~v~~~~~s~~g~ 121 (380)
T 3iz6_a 49 VSFNPTDLVCCRTLQGHSGKVYSLDWTPEKN-----WIVSASQDGRLIVWN--ALTSQKTHAIKLHCPWVMECAFAPNGQ 121 (380)
T ss_dssp CCCCCCCCEEEEEECCCSSCEEEEEECTTSS-----CEEEEETTSEEEEEE--TTTTEEEEEEECCCTTCCCCEECTTSS
T ss_pred cccccceeEEeecccccccEEEEEEEcCCCC-----EEEEEeCCCeEEEEE--CCCCccceEEecCCCCEEEEEECCCCC
Confidence 5688888888889999988888888887543 334888999999999 777888899999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCe-------eeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEe----
Q psy6127 235 LLISCSDDDQIIIYDCEQGT-------SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYF---- 303 (515)
Q Consensus 235 ~lasgs~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~---- 303 (515)
+||+|+.|+.+++||+.+.. ....+.+|...+.++.|.|++...++ +++.|++|++||+.+++.+..+
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~-s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI-TGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEE-EECTTSCEEEECTTTCCEEEEECCCS
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEE-EECCCCcEEEEEcCCCcEEEEeeccc
Confidence 99999999999999987532 34567899999999999998654333 3358999999999999988877
Q ss_pred -cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcC-CCCeEEEE-ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeec
Q psy6127 304 -PGHVRKVSSLNLSP-VDDSFISGSYDKTVRVWDLR-QPNNVGMI-QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRS 379 (515)
Q Consensus 304 -~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~-~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 379 (515)
.+|...|.+++|+| ++++|++|+.|++|++||++ .++.+..+ .+...+.+++|+|++++|++|+.||+|++||+++
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence 68999999999987 78899999999999999998 44666666 4566799999999999999999999999999987
Q ss_pred CCCCCceeeec----CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecc-ccCCCCCEEEEEecCCCE
Q psy6127 380 YDKGPFASFKC----PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGV-LNNNASPLEATFTPDSQF 454 (515)
Q Consensus 380 ~~~~~~~~~~~----~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~i~~~~~sp~g~~ 454 (515)
+... ..+.. ...+...+++++|+|+|+++++|+.||.|++||..+++....+... ..+...|.+++|+|+|++
T Consensus 281 ~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 281 GHQL--QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp TEEE--EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred CcEE--EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence 5411 11111 1122335789999999999999999999999999999888777322 345666999999999999
Q ss_pred EEEEeCCCcEEEEECCCCe
Q psy6127 455 VASGSTDGQVHIWNAERGY 473 (515)
Q Consensus 455 l~sgs~dg~I~iwd~~~~~ 473 (515)
|++|+.||.|++|++...+
T Consensus 359 l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 359 LCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEECTTSCEEEEECCSSS
T ss_pred EEEeeCCCCEEEEecCCCc
Confidence 9999999999999987653
No 30
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-39 Score=318.42 Aligned_cols=301 Identities=17% Similarity=0.249 Sum_probs=232.8
Q ss_pred hccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeec-cc-cCCcEEEEEEcCCCCEEEE
Q psy6127 161 LLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVF-RE-NTDKINSLDYSSDGSLLIS 238 (515)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~-~~-h~~~I~~l~~spd~~~las 238 (515)
+.+.+.++++|...|.++.|.+.. ++ +++.|+.+++|+-.....++...+ .+ |.+.|.+++|+|++++||+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~~------la-s~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las 75 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQGI------LA-TGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAA 75 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETTE------EE-EEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEE
T ss_pred ccccceeeccCCCceeeeccCCCE------EE-EEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEE
Confidence 455677888998888888887762 43 778889999998332224556666 44 9999999999999999999
Q ss_pred EeCCCeEEEEECCC-------CeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC----CeeeEEecCCC
Q psy6127 239 CSDDDQIIIYDCEQ-------GTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD----NKYVRYFPGHV 307 (515)
Q Consensus 239 gs~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~----~~~~~~~~~h~ 307 (515)
|+.|++|++||... .+....+.+|...|.+++|+|+++++++++ .|++|++||+.. .+++..+.+|.
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s--~D~~v~iwd~~~~~~~~~~~~~~~~h~ 153 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS--RDKSVWIWETDESGEEYECISVLQEHS 153 (330)
T ss_dssp EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE--TTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe--CCCEEEEEeccCCCCCeEEEEEeccCC
Confidence 99999999999853 356778899999999999999999777664 799999999943 25678889999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--CeEEEE-ecCCCeeEEEECCC--CCEEEEEECCCcEEEEEeecCCC
Q psy6127 308 RKVSSLNLSPVDDSFISGSYDKTVRVWDLRQP--NNVGMI-QLSGNKPIAAYDPE--GLAFAIGVNSDSIKLYDVRSYDK 382 (515)
Q Consensus 308 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~-~~~~~~~~~~~s~~--~~~l~~g~~dg~i~i~d~~~~~~ 382 (515)
..|.+++|+|++++|++|+.|++|++||..++ +++..+ .+...+.+++|+|+ +..+++|+.|++|++||++....
T Consensus 154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 99999999999999999999999999999876 455666 45567999999998 77899999999999999986432
Q ss_pred CCc---eeee-cCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCC-CCEEEEEec--CCCEE
Q psy6127 383 GPF---ASFK-CPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNA-SPLEATFTP--DSQFV 455 (515)
Q Consensus 383 ~~~---~~~~-~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~i~~~~~sp--~g~~l 455 (515)
... .... ....|...|.+++|+|++ +|++++.||.|++||..+++..........+.. .+.+++|+| ++++|
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTIL 312 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCE
T ss_pred cccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEE
Confidence 111 1122 233478899999999765 889999999999999987743211111122333 589999999 78999
Q ss_pred EEEeCCCcEEEEECCC
Q psy6127 456 ASGSTDGQVHIWNAER 471 (515)
Q Consensus 456 ~sgs~dg~I~iwd~~~ 471 (515)
++|+.||.|++||+++
T Consensus 313 as~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 313 ATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEETTSEEEEEEC--
T ss_pred EEecCCCcEEEEEecc
Confidence 9999999999999864
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-39 Score=319.27 Aligned_cols=287 Identities=16% Similarity=0.264 Sum_probs=255.3
Q ss_pred eeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEE
Q psy6127 214 AKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLS 293 (515)
Q Consensus 214 ~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd 293 (515)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++.+++++ .|+.|++||
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd 102 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS--ADYSIKLWD 102 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTTEEEEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEe--CCCeEEEEE
Confidence 356889999999999999999999999999999999999999999999999999999999999887665 799999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCCe-----------EEEE-ecCC--CeeEE
Q psy6127 294 LHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYD-----KTVRVWDLRQPNN-----------VGMI-QLSG--NKPIA 354 (515)
Q Consensus 294 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~-----------~~~~-~~~~--~~~~~ 354 (515)
+.+++.+..+. |...|.+++|+|+++.+++++.+ +.|++||++.+.. ...+ .+.. .+.++
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 99999998887 88999999999999999999999 9999999986642 1222 2222 68899
Q ss_pred EECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEee
Q psy6127 355 AYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLS 434 (515)
Q Consensus 355 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 434 (515)
+|+|+++.+++++.||.|++||+++.. ........+...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNY----EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTT----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCc----EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence 999999999999999999999998732 1344445677899999999999999999999999999999999888887
Q ss_pred ccccCCCCCEEEEEecCCCEEEEEeCCC--------------cEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEE
Q psy6127 435 GVLNNNASPLEATFTPDSQFVASGSTDG--------------QVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500 (515)
Q Consensus 435 ~~~~~~~~i~~~~~sp~g~~l~sgs~dg--------------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las 500 (515)
....+..++|+|+++++++++.++ .+++||..+++.+..+.+ |.+.|++++|+|++++|++
T Consensus 258 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 258 ----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG-HFGPLNTVAISPQGTSYAS 332 (369)
T ss_dssp ----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSEEEE
T ss_pred ----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec-ccCcEEEEEECCCCCEEEE
Confidence 334489999999999999999888 899999999999999988 9999999999999999999
Q ss_pred eeCC--EEEEcCCC
Q psy6127 501 ACSN--MAFWIPTL 512 (515)
Q Consensus 501 ~~~d--v~iW~~~~ 512 (515)
++.| +++|+++.
T Consensus 333 ~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 333 GGEDGFIRLHHFEK 346 (369)
T ss_dssp EETTSEEEEEEECH
T ss_pred EcCCCeEEEEECcc
Confidence 9865 99999863
No 32
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=318.95 Aligned_cols=309 Identities=16% Similarity=0.187 Sum_probs=243.2
Q ss_pred ccccccccCCce-eEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE--eee-eccccCCcEEEEEEcCCCCEEE
Q psy6127 162 LHSLSSLESPHF-VSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR--VAK-VFRENTDKINSLDYSSDGSLLI 237 (515)
Q Consensus 162 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~--~~~-~~~~h~~~I~~l~~spd~~~la 237 (515)
.+.+.++++|.. .+.+++|.+... +.++++.|+.+++|+ ....+ +.. ...+|...|.+++|+|++++||
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-----~las~~~D~~i~iw~--~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-----LLASCGGDRRIRIWG--TEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-----CEEEEETTSCEEEEE--EETTEEEEEEEECSSCSSCEEEEEECTTSSEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-----EEEEEcCCCeEEEEE--cCCCcceeeeeeccccCCcEEEEEECCCCCEEE
Confidence 456678888865 677777776543 334788899999998 54433 222 3479999999999999999999
Q ss_pred EEeCCCeEEEEECCCC--eeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCC---eeeEEecCCCCCeEE
Q psy6127 238 SCSDDDQIIIYDCEQG--TSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDN---KYVRYFPGHVRKVSS 312 (515)
Q Consensus 238 sgs~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~---~~~~~~~~h~~~v~~ 312 (515)
+|+.|+++++||..++ +....+.+|...|.+++|+|+++.+++++ .|++|++||+.++ ..+..+.+|...|.+
T Consensus 78 s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~ 155 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS--RDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155 (345)
T ss_dssp EEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred EEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE--CCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence 9999999999998876 45788999999999999999999877665 7999999999876 456778899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCCeE--EEE-ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCc----
Q psy6127 313 LNLSPVDDSFISGSYDKTVRVWDLRQPNNV--GMI-QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPF---- 385 (515)
Q Consensus 313 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~---- 385 (515)
++|+|++++|++|+.|++|++||.++++.. ..+ .+...+.+++|+|++++|++++.|++|++||.........
T Consensus 156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence 999999999999999999999999887643 344 4556799999999999999999999999999865332110
Q ss_pred ------eee-ecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce----eEEe--eccccCCCCCEEEEEecCC
Q psy6127 386 ------ASF-KCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNC----VQSL--SGVLNNNASPLEATFTPDS 452 (515)
Q Consensus 386 ------~~~-~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~----~~~~--~~~~~~~~~i~~~~~sp~g 452 (515)
... .....|...|.+++|+|++..+++++.|+.|++|+...+.. ...+ ..+..|...|.+++|+|++
T Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 315 (345)
T 3fm0_A 236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE 315 (345)
T ss_dssp ---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred ccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence 111 12234778899999999999999999999999999875431 1111 2223456679999999998
Q ss_pred -CEEEEEeCCCcEEEEECCCCeEEEEEc
Q psy6127 453 -QFVASGSTDGQVHIWNAERGYKVCVLD 479 (515)
Q Consensus 453 -~~l~sgs~dg~I~iwd~~~~~~~~~~~ 479 (515)
.+|++|+.||+|++|++.+++.....+
T Consensus 316 ~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 316 PGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp TTEEEEEETTSCEEEEEECC--------
T ss_pred ceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 599999999999999999887765443
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-39 Score=315.20 Aligned_cols=279 Identities=14% Similarity=0.205 Sum_probs=242.4
Q ss_pred ccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---eEec--CCCCceeEEEEecCCCeEEEEEeeCCCeEEE
Q psy6127 217 FRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSK---NTIN--SKKYGVDLIKFTHSKTTAIHASTKVDATLRY 291 (515)
Q Consensus 217 ~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~v 291 (515)
..+|.+.|++++|+|++++|++++ ||.|++||+.+++.. ..+. .|...|.+++|+|+++.+++++ .|+.|++
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~ 123 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG--EASTLSI 123 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE--SSSEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc--CCCcEEE
Confidence 348999999999999999999999 999999999876533 3333 7889999999999998877665 7999999
Q ss_pred EECCCCe--eeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEEC
Q psy6127 292 LSLHDNK--YVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVN 368 (515)
Q Consensus 292 wd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~ 368 (515)
||+.+++ ....+..|...|.+++|+|+++++++++.||.|++||+++++....+. +...+.+++|+|+++.+++++.
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 9999887 667788899999999999999999999999999999999999888875 4567999999999999999999
Q ss_pred CCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEE
Q psy6127 369 SDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATF 448 (515)
Q Consensus 369 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 448 (515)
||.|++||+++.+ .... ..+...+.+++|+|+++++++++.++.|++||+++++.. .+.. +...+.+++|
T Consensus 204 dg~i~~~d~~~~~-----~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~v~~~~~ 273 (337)
T 1gxr_A 204 DNTVRSWDLREGR-----QLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL---HESCVLSLKF 273 (337)
T ss_dssp TSEEEEEETTTTE-----EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC---CSSCEEEEEE
T ss_pred CCcEEEEECCCCc-----eEee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcC---CccceeEEEE
Confidence 9999999998754 2211 135567999999999999999999999999999988754 3333 4455999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcC
Q psy6127 449 TPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIP 510 (515)
Q Consensus 449 sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~ 510 (515)
+|++++|++++.||.|++||+.+++.+.... |...|++++|+|+++++++++.+ +++|++
T Consensus 274 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEecCCCcEEEEECCCCeEEEEec--CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999999999999999886654 88999999999999999998865 999986
No 34
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.1e-40 Score=330.54 Aligned_cols=317 Identities=15% Similarity=0.152 Sum_probs=261.6
Q ss_pred EEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q psy6127 176 LFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTS 255 (515)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~ 255 (515)
.++++.++. ++ +++.++.+++|+ ....+....+.+| ..+....|+|++++|++|+.||.|++||+.+++.
T Consensus 62 ~~~s~~g~~------l~-~~~~d~~v~i~d--~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 62 NTFEKVGSH------LY-KARLDGHDFLFN--TIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CEEEEEETT------EE-EEEETTEEEEEE--CCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred eeeeecCCe------EE-EEEcCCcEEEEE--ecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence 345555554 33 566678999999 7777777777777 5555667899999999999999999999999999
Q ss_pred eeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy6127 256 KNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWD 335 (515)
Q Consensus 256 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 335 (515)
...+..|...|.+++|+|+++.+++++ .|+.|++||+.+++.+..+.+|...|.+++|+|+++.|++++.|++|++||
T Consensus 132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFPSGEALISSS--QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp EEETTSSSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eeecccccCccEEEEECCCCCEEEEEe--CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence 888899999999999999999777654 799999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEec----C---------------------CCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeec
Q psy6127 336 LRQPNNVGMIQL----S---------------------GNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKC 390 (515)
Q Consensus 336 ~~~~~~~~~~~~----~---------------------~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 390 (515)
+++++.+..+.. . ..+.+++|+|+++++++|+.||.|++||+++.. .....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~ 285 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE----QTIQL 285 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC----EEEEE
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc----eeEEc
Confidence 999998888753 1 234445668999999999999999999998754 23333
Q ss_pred CCCCCcCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCce-eEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEE
Q psy6127 391 PGERGCEWTGLKFSPDGK-LILVSTNGSIIRLFDAFNGNC-VQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWN 468 (515)
Q Consensus 391 ~~~~~~~i~~l~~sp~~~-~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd 468 (515)
...+...+.+++|+|+++ ++++++.||.|++||+++++. +..+..+. ...+.++ +.+++++|++++.||.|++|+
T Consensus 286 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~-~~~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 286 PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE--GTPINNV-YFAAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST--TSCEEEE-EEETTEEEEEETTTEEEEEEE
T ss_pred ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC--CCCceEE-EeCCCCEEEEecCCccEEEEe
Confidence 456788999999999999 999999999999999998754 66666543 2336666 556888999999999999999
Q ss_pred CCCCe---------EEEEEcCCCCCCeEEEEECCCCC----EEEEeeCC-EEEEcCCC
Q psy6127 469 AERGY---------KVCVLDGDHPSAVQSLQFNPKYH----MLASACSN-MAFWIPTL 512 (515)
Q Consensus 469 ~~~~~---------~~~~~~~~h~~~V~~l~~sp~~~----~las~~~d-v~iW~~~~ 512 (515)
+.... ....+.. |.+.|.+++|+|++. ++++|+.. +.+|+++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 363 ISDPESERPAIEFETPTFLVS-NDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp ECCTTCCSCEECTTSCEEECC-SSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCCCCCccceeccCccEEcc-CCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 87631 1223344 888999999999998 66666544 99999875
No 35
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-40 Score=380.01 Aligned_cols=353 Identities=16% Similarity=0.252 Sum_probs=303.6
Q ss_pred hheeecccccccccccCCCCcCCCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE
Q psy6127 133 KIVAKSENMCNLTKLDLPYNKLGSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR 212 (515)
Q Consensus 133 ~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~ 212 (515)
++||+++.++.| ++||..+++.+.++.+|...+.++.|.+..... +.++++.|+.+++|| +..++
T Consensus 670 ~~l~s~~~d~~v----------~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~sg~~d~~v~vwd--~~~~~ 734 (1249)
T 3sfz_A 670 SYIATCSADKKV----------KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL---LLATGSNDFFLKLWD--LNQKE 734 (1249)
T ss_dssp SEEEEEETTSEE----------EEEETTTCCEEEEEECCSSCEEEEEECSSSSCC---EEEEEETTSCEEEEE--TTSSS
T ss_pred CEEEEEeCCCeE----------EEEECCCCceEEEEcCCCCcEEEEEEecCCCce---EEEEEeCCCeEEEEE--CCCcc
Confidence 678899999999 999999999999999998878888887643322 445788899999999 78889
Q ss_pred eeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe---------------------------------
Q psy6127 213 VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTI--------------------------------- 259 (515)
Q Consensus 213 ~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~--------------------------------- 259 (515)
+..++.+|.+.|++++|+|++++|++|+.||+|++||+.+++....+
T Consensus 735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999998876544332
Q ss_pred ----------------------cCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcC
Q psy6127 260 ----------------------NSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSP 317 (515)
Q Consensus 260 ----------------------~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 317 (515)
.+|...+.+++|+|++..+++++ .|+.|++||+.++..+..+.+|...|.+++|+|
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 892 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL--SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC--SSSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeeecCCCccceEEEEECC
Confidence 16678899999999998777664 799999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCC-----------------------------------------------------------
Q psy6127 318 VDDSFISGSYDKTVRVWDLRQ----------------------------------------------------------- 338 (515)
Q Consensus 318 ~~~~l~s~s~dg~i~iwd~~~----------------------------------------------------------- 338 (515)
+++.+++++.||.|++||+.+
T Consensus 893 dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 972 (1249)
T 3sfz_A 893 DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972 (1249)
T ss_dssp TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTT
T ss_pred CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCC
Confidence 999999999999999998542
Q ss_pred --------------------CCeEEEE-ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcC
Q psy6127 339 --------------------PNNVGMI-QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCE 397 (515)
Q Consensus 339 --------------------~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 397 (515)
++....+ .+...+.+++|+|+++++++++.||.|++||+.++. . .....+...
T Consensus 973 g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~-----~-~~~~~~~~~ 1046 (1249)
T 3sfz_A 973 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-----Y-VFLQAHQET 1046 (1249)
T ss_dssp SSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE-----E-ECCBCCSSC
T ss_pred CCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----e-EEEecCCCc
Confidence 1111111 234457789999999999999999999999998753 2 233467789
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy6127 398 WTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCV 477 (515)
Q Consensus 398 i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~ 477 (515)
+.+++|+|++ .+++++.|+.|++||+.+++....+.+|... +.+++|+|+++++++++.||.|++||+.+++++..
T Consensus 1047 v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~---v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1047 VKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGT---VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp EEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSC---CCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC
T ss_pred EEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCc---EEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee
Confidence 9999999976 5778999999999999999999888875544 89999999999999999999999999999999988
Q ss_pred EcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 478 LDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 478 ~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
+.+ |.+.|++++|+|+++++++++.| +++|++...
T Consensus 1123 l~~-h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A 1123 LKG-HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp CCC-CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred ecc-CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 888 99999999999999999999865 999998754
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.3e-40 Score=320.40 Aligned_cols=298 Identities=16% Similarity=0.212 Sum_probs=227.7
Q ss_pred CCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEee---------eeccccCCcEE
Q psy6127 155 GSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVA---------KVFRENTDKIN 225 (515)
Q Consensus 155 ~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~---------~~~~~h~~~I~ 225 (515)
+.|+....... .+...+.++.|.+.... ++ +++ +..+++|+..+..++.. .....|...|.
T Consensus 17 r~w~~~~~~~~----~~~~~v~~~~fs~dG~~----l~-~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 86 (344)
T 4gqb_B 17 REWNLPPNAPA----CMERQLEAARYRSDGAL----LL-GAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVA 86 (344)
T ss_dssp ------CCSCS----SCCSEEEEEEECTTSCE----EE-EEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEE
T ss_pred cccCCCCCCcc----cccCCEEEEEECCCCCE----EE-EEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEE
Confidence 67877654332 23333556666654421 22 333 44577887443333211 11234567899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeE----ecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeE
Q psy6127 226 SLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNT----INSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVR 301 (515)
Q Consensus 226 ~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~ 301 (515)
+++|+|++ .|++|+.||+|+|||+.+++.... ..+|...|.+++|+|+++.+++++ .|++|++||+++++++.
T Consensus 87 ~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs--~d~~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 87 DLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS--KDICIKVWDLAQQVVLS 163 (344)
T ss_dssp EEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEE
T ss_pred EEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe--CCCeEEEEECCCCcEEE
Confidence 99999985 688999999999999998876544 458999999999999999877664 79999999999999999
Q ss_pred EecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCeEEEEe---cCCCeeEEEECCC-CCEEEEEECCCcEEEEE
Q psy6127 302 YFPGHVRKVSSLNLSPVDD-SFISGSYDKTVRVWDLRQPNNVGMIQ---LSGNKPIAAYDPE-GLAFAIGVNSDSIKLYD 376 (515)
Q Consensus 302 ~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~s~~-~~~l~~g~~dg~i~i~d 376 (515)
.+.+|.+.|.+++|+|++. .|++++.|++|++||+++++....+. ....+.+++|+|+ ++++++|+.||+|++||
T Consensus 164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 9999999999999999985 78999999999999999999888763 2334788999995 57889999999999999
Q ss_pred eecCCCCCceeeecCCCCCcCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCC-E
Q psy6127 377 VRSYDKGPFASFKCPGERGCEWTGLKFSPDG-KLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQ-F 454 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~ 454 (515)
+++++ .......|...|++++|+|++ ++|++|+.|++|++||+.+++... +.+ |...|++++|+|+++ +
T Consensus 244 ~~~~~-----~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~---H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 244 TKSTS-----CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQA---HRDFVRDATWSPLNHSL 314 (344)
T ss_dssp SCC-------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECC---CSSCEEEEEECSSSTTE
T ss_pred CCCCc-----EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcC---CCCCEEEEEEeCCCCeE
Confidence 98765 333345788899999999998 578999999999999999987653 444 445599999999986 6
Q ss_pred EEEEeCCCcEEEEECCCCeE
Q psy6127 455 VASGSTDGQVHIWNAERGYK 474 (515)
Q Consensus 455 l~sgs~dg~I~iwd~~~~~~ 474 (515)
|++++.||+|++|++.+...
T Consensus 315 las~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 315 LTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEETTSCEEEEECCC---
T ss_pred EEEEcCCCeEEEEECCCCCC
Confidence 77999999999999987543
No 37
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.5e-39 Score=325.54 Aligned_cols=330 Identities=20% Similarity=0.318 Sum_probs=282.4
Q ss_pred cchhhccccccccCCce-eEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCE
Q psy6127 157 WDFELLHSLSSLESPHF-VSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSL 235 (515)
Q Consensus 157 wd~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~ 235 (515)
|.....+....+.+|.. ++.+++++++. + ++++.|+.+++|+ ..++++...+.+|.+.|.+++|+ +++
T Consensus 103 w~~~~~~~~~~l~~h~~~v~~~~~~~g~~------l-~sg~~dg~i~vwd--~~~~~~~~~~~~h~~~v~~~~~~--~~~ 171 (445)
T 2ovr_B 103 WRRGELKSPKVLKGHDDHVITCLQFCGNR------I-VSGSDDNTLKVWS--AVTGKCLRTLVGHTGGVWSSQMR--DNI 171 (445)
T ss_dssp HHHSCCCCCEEEECSTTSCEEEEEEETTE------E-EEEETTSCEEEEE--TTTCCEEEECCCCSSCEEEEEEE--TTE
T ss_pred ccCCCcceeEEecccCCCcEEEEEEcCCE------E-EEEECCCcEEEEE--CCCCcEEEEEcCCCCCEEEEEec--CCE
Confidence 55444555667888854 56778887553 3 4778899999999 77889999999999999999997 569
Q ss_pred EEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEE
Q psy6127 236 LISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNL 315 (515)
Q Consensus 236 lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~ 315 (515)
+++|+.||+|++||+.+++....+.+|...|.+++|++ +.++++ +.|+.|++||+.+++.+..+.+|...|.+++|
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~--s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSG--SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--TEEEEE--ETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred EEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC--CEEEEE--eCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 99999999999999999999999999999999999964 445444 58999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCC
Q psy6127 316 SPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGER 394 (515)
Q Consensus 316 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 394 (515)
+++.+++|+.||.|++||+++++.+..+. +...+.+++| ++..+++++.||.|++||+++++ .......|
T Consensus 248 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~ 318 (445)
T 2ovr_B 248 --DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-----CIHTLTGH 318 (445)
T ss_dssp --CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-----EEEEECCC
T ss_pred --CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-----EEEEEcCC
Confidence 68899999999999999999999888885 4456778888 88999999999999999998865 44444567
Q ss_pred CcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy6127 395 GCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYK 474 (515)
Q Consensus 395 ~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~ 474 (515)
...+.++.+ +++++++++.||.|++||+++++++..+..+..+...|.+++|+ ++++++|+.||.|++||+.+++.
T Consensus 319 ~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 319 QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence 777877777 56699999999999999999999999998866677779999995 68999999999999999999999
Q ss_pred EEEEc----CCCCCCeEEEEECCCCCEEEEeeCC------EEEEcCCCCC
Q psy6127 475 VCVLD----GDHPSAVQSLQFNPKYHMLASACSN------MAFWIPTLSA 514 (515)
Q Consensus 475 ~~~~~----~~h~~~V~~l~~sp~~~~las~~~d------v~iW~~~~~~ 514 (515)
+..+. ..|.+.|++++|+|++.++++++.| +.+||++..+
T Consensus 395 ~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 395 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 98882 2388899999999999999998743 7799988764
No 38
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-39 Score=325.76 Aligned_cols=292 Identities=15% Similarity=0.254 Sum_probs=251.2
Q ss_pred eEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------eeeEecCCCCceeEEEEecC----C---Ce
Q psy6127 211 YRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGT------SKNTINSKKYGVDLIKFTHS----K---TT 277 (515)
Q Consensus 211 ~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~ 277 (515)
..+.+.+++|.+.|++++|+| ++|++|+.||.|++||+.+++ ....+..|...|.+++|+|+ + ..
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 355678899999999999999 799999999999999999887 78888999999999999999 7 76
Q ss_pred EEEEEeeCCCeEEEEECCCCee-----eEEecCC-----CCCeEEEEEc----CCCCE-EEEEeCCCcEEEEEcCC----
Q psy6127 278 AIHASTKVDATLRYLSLHDNKY-----VRYFPGH-----VRKVSSLNLS----PVDDS-FISGSYDKTVRVWDLRQ---- 338 (515)
Q Consensus 278 l~~~s~~~d~~v~vwd~~~~~~-----~~~~~~h-----~~~v~~l~~~----~~~~~-l~s~s~dg~i~iwd~~~---- 338 (515)
+++++ .|+.|++||+.+++. ...+..| ...|.+++|+ |+++. |++++.||.|++||+++
T Consensus 84 l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 84 VATTS--FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEE--TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred EEEEc--CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 66554 799999999998887 8888888 5999999999 99999 99999999999999998
Q ss_pred --CCeEE-----EEe--------cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCC---C---CcC
Q psy6127 339 --PNNVG-----MIQ--------LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGE---R---GCE 397 (515)
Q Consensus 339 --~~~~~-----~~~--------~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~---~---~~~ 397 (515)
++.+. .+. +...+.+++|+|++ .+++++.||.|++||+++.+ ....... | ...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-----PLYNFESQHSMINNSNS 235 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-----EEEEEECCC---CCCCC
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-----eeEEEeccccccccCCc
Confidence 65554 553 35668999999999 99999999999999998743 2222233 6 789
Q ss_pred eEEEEEcCCCCEEEEEECC---CcEEEEECCCCceeEEeeccc----------cCCCCCEEEEEecCCCEEEEEeCCCcE
Q psy6127 398 WTGLKFSPDGKLILVSTNG---SIIRLFDAFNGNCVQSLSGVL----------NNNASPLEATFTPDSQFVASGSTDGQV 464 (515)
Q Consensus 398 i~~l~~sp~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~----------~~~~~i~~~~~sp~g~~l~sgs~dg~I 464 (515)
+.+++|+|++++|++++.| +.|++||+++++.+..+.... .+...+.+++|+|++++|++++.||.|
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 9999999999999999999 999999999999988887610 033459999999999999999999999
Q ss_pred EEEECCCCeEEEEEc------CCC---------------CCCeEEEEECCCC----------CEEEEeeCC--EEEEcCC
Q psy6127 465 HIWNAERGYKVCVLD------GDH---------------PSAVQSLQFNPKY----------HMLASACSN--MAFWIPT 511 (515)
Q Consensus 465 ~iwd~~~~~~~~~~~------~~h---------------~~~V~~l~~sp~~----------~~las~~~d--v~iW~~~ 511 (515)
++||+.+++++..+. . | ...|++++|+|++ .+|++++.| +++|+++
T Consensus 316 ~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 316 RFWDVKTKERITTLNMHCDDIE-IEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEEETTTTEEEEEEECCGGGCS-SGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EEEEcCCCceeEEEecccCccc-chhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 999999999999998 6 7 8999999999998 799998865 9999987
Q ss_pred CC
Q psy6127 512 LS 513 (515)
Q Consensus 512 ~~ 513 (515)
.+
T Consensus 395 ~g 396 (397)
T 1sq9_A 395 GG 396 (397)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-39 Score=317.44 Aligned_cols=300 Identities=15% Similarity=0.178 Sum_probs=237.3
Q ss_pred cccccccCCceeEEEEEEeeccccc-eeeeeeeCCCCcEEEEccceee-------eeEeeeeccccCCcEEEEEEcCCCC
Q psy6127 163 HSLSSLESPHFVSLFVTFVSRVLTM-AASLAHSRSSRTITKCSENLVR-------SYRVAKVFRENTDKINSLDYSSDGS 234 (515)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~s~~~~~~i~~wd~~~~-------~~~~~~~~~~h~~~I~~l~~spd~~ 234 (515)
+...++++|...|.++.+....... ...+.++++.|+.+++|+ +. ...+...+.+|...|.+++|+|++.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd--~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWK--LYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEE--ECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEE--CCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 4556788998778887772110000 111345888899999998 43 3466788999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEe--cCCCCCeEE
Q psy6127 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYF--PGHVRKVSS 312 (515)
Q Consensus 235 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~--~~h~~~v~~ 312 (515)
++++|+.|++|++||+.+++....+.+|...|.+++|+|++..+++++ .|++|++||+......... .+|...|.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG--AEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE--TTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc--CCCEEEEEeccCCceeeeecccCCCceeee
Confidence 999999999999999999999999999999999999999999887664 7999999999844332222 378999999
Q ss_pred EEEcCCC----------CEEEEEeCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCC
Q psy6127 313 LNLSPVD----------DSFISGSYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYD 381 (515)
Q Consensus 313 l~~~~~~----------~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~ 381 (515)
++|+|++ .+|++++.|++|++||. ..+....+ .+...+.+++|+|+|++|++|+.||.|++||++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999987 78999999999999994 44444444 456679999999999999999999999999995433
Q ss_pred CCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeE--Eeec--------cccCCCCCEEEEEecC
Q psy6127 382 KGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQ--SLSG--------VLNNNASPLEATFTPD 451 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~--------~~~~~~~i~~~~~sp~ 451 (515)
.. ...+ .+...|.+++|+|++.+++++ .|+.+++||+.+++... .+.. ...+...+.+++|+|+
T Consensus 247 ~~-~~~~----~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 320 (343)
T 2xzm_R 247 YP-QREF----DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL 320 (343)
T ss_dssp SC-SEEE----ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred cc-ceee----cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence 21 1111 133469999999999887655 57789999998876543 3331 1134556899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCe
Q psy6127 452 SQFVASGSTDGQVHIWNAERGY 473 (515)
Q Consensus 452 g~~l~sgs~dg~I~iwd~~~~~ 473 (515)
|++|++|+.||.|++|+++++.
T Consensus 321 g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 321 GKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SCCEEEEETTSEEEEEEEEEEE
T ss_pred CCeEEEecCCceEEEEEEEccC
Confidence 9999999999999999987653
No 40
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.9e-39 Score=344.13 Aligned_cols=288 Identities=19% Similarity=0.296 Sum_probs=245.8
Q ss_pred EeeeeccccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-----eeeeEecCCCCceeEEEEecCCCeEEEEEeeC
Q psy6127 212 RVAKVFRENTDKINSLDYSSDG-SLLISCSDDDQIIIYDCEQG-----TSKNTINSKKYGVDLIKFTHSKTTAIHASTKV 285 (515)
Q Consensus 212 ~~~~~~~~h~~~I~~l~~spd~-~~lasgs~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~ 285 (515)
+....+++|++.|++++|+|++ ++|+|||.|++|++||+.+. .....+.+|...|.+++|+|+++.+++++ .
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs--~ 450 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS--W 450 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE--T
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe--C
Confidence 4456789999999999999964 79999999999999998753 44567899999999999999999877654 7
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE----ecCCCeeEEEECCCC-
Q psy6127 286 DATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI----QLSGNKPIAAYDPEG- 360 (515)
Q Consensus 286 d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~s~~~- 360 (515)
|++|++||+.+++....+.+|...|.+++|+|+++.|++|+.|++|++||.......... .+...+.+++|+|++
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999999998755433332 234558999999987
Q ss_pred -CEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccC
Q psy6127 361 -LAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNN 439 (515)
Q Consensus 361 -~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 439 (515)
..+++++.|++|++||++..+ .......|...|++++|+|++++|++++.|+.|++||+++++++..+..
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~-----~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---- 601 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCK-----LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---- 601 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC----
T ss_pred cceEEEEeCCCeEEEEECCCCc-----EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC----
Confidence 689999999999999998754 4444567888999999999999999999999999999999998877653
Q ss_pred CCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCC------------------CCCeEEEEECCCCCEEEEe
Q psy6127 440 NASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDH------------------PSAVQSLQFNPKYHMLASA 501 (515)
Q Consensus 440 ~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h------------------~~~V~~l~~sp~~~~las~ 501 (515)
...+.+++|+|++.++++++ ++.|++||+.+++.+..+...+ ...+++++|+|+|++|++|
T Consensus 602 ~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg 680 (694)
T 3dm0_A 602 NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680 (694)
T ss_dssp SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE
Confidence 23489999999999888776 5569999999999888775311 1237899999999999999
Q ss_pred eCC--EEEEcCC
Q psy6127 502 CSN--MAFWIPT 511 (515)
Q Consensus 502 ~~d--v~iW~~~ 511 (515)
+.| +++|++.
T Consensus 681 s~Dg~i~iW~i~ 692 (694)
T 3dm0_A 681 YTDGVIRVWGIG 692 (694)
T ss_dssp ETTSEEEEEEC-
T ss_pred cCCCeEEEEecc
Confidence 866 9999985
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.5e-39 Score=309.19 Aligned_cols=291 Identities=19% Similarity=0.285 Sum_probs=249.4
Q ss_pred cccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCC
Q psy6127 163 HSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDD 242 (515)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~d 242 (515)
....++.+|...+.++.+.+... +.++++.|+.+++|+ ....+....+.+|...|.+++|+|++++|++|+.|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-----~l~s~~~dg~i~iw~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 86 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-----WLASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 86 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSCEEEEE--TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEEEEcccCCcEEEEEECCCCC-----EEEEeeCCCeEEEEe--CCCcccchhhccCCCceEEEEEcCCCCEEEEECCC
Confidence 44557788877788888877543 334677888999998 66778888999999999999999999999999999
Q ss_pred CeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEE
Q psy6127 243 DQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSF 322 (515)
Q Consensus 243 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 322 (515)
+.|++||+.+++.+..+.+|...|.+++|+|+++.+++++ .|+.|++||+++++.+..+..|..+|.+++|+|++++|
T Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence 9999999999999999999999999999999998877654 79999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCCeEEEEe--cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCc---C
Q psy6127 323 ISGSYDKTVRVWDLRQPNNVGMIQ--LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGC---E 397 (515)
Q Consensus 323 ~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~ 397 (515)
++++.||.|++||+++++.+..+. ....+..++|+|+++++++++.|+.|++||+++++ .......+.. .
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~ 239 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK-----CLKTYTGHKNEKYC 239 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-----EEEEECSSCCSSSC
T ss_pred EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEEEEEecCCceEE
Confidence 999999999999999999887763 33457889999999999999999999999998754 2222222222 2
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEe--CCCcEEEEECC
Q psy6127 398 WTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGS--TDGQVHIWNAE 470 (515)
Q Consensus 398 i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs--~dg~I~iwd~~ 470 (515)
+......+++.++++|+.||.|++||+.+++.+..+.+|.. .|.+++|+|+++++++++ .|+.|++|+.+
T Consensus 240 ~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD---VVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS---CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC---cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 32333446788999999999999999999999988887654 499999999999999987 69999999864
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-40 Score=332.43 Aligned_cols=306 Identities=14% Similarity=0.203 Sum_probs=257.6
Q ss_pred CCCcEEEEccceeeeeE---eeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeeeeEecCCCCceeE
Q psy6127 196 SSRTITKCSENLVRSYR---VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQ----GTSKNTINSKKYGVDL 268 (515)
Q Consensus 196 ~~~~~i~~wd~~~~~~~---~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~----~~~~~~~~~~~~~v~~ 268 (515)
+.++.+++|+ +...+ +...+ .|...|++++|+|++++|++|+.||.|++||+.+ .+....+..|...|.+
T Consensus 42 ~~d~~v~iw~--~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~ 118 (416)
T 2pm9_A 42 STDSSLELWS--LLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKT 118 (416)
T ss_dssp CCCCCCEEEE--SSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCE
T ss_pred CCCCeEEEEE--ccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEE
Confidence 7788899998 55443 33333 6899999999999999999999999999999987 4578889999999999
Q ss_pred EEEecC-CCeEEEEEeeCCCeEEEEECCCCe------eeE---EecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcC
Q psy6127 269 IKFTHS-KTTAIHASTKVDATLRYLSLHDNK------YVR---YFPGHVRKVSSLNLSPV-DDSFISGSYDKTVRVWDLR 337 (515)
Q Consensus 269 ~~~~~~-~~~l~~~s~~~d~~v~vwd~~~~~------~~~---~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~ 337 (515)
++|+|+ +..++++ +.|+.|++||+.+++ ... .+.+|...|.+++|+|+ +..+++++.|+.|++||++
T Consensus 119 ~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 119 VKFNAKQDNVLASG--GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK 196 (416)
T ss_dssp EEECSSSTTBEEEE--CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred EEEcCCCCCEEEEE--cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence 999998 6655544 479999999999886 332 34679999999999999 7899999999999999999
Q ss_pred CCCeEEEEec-------CCCeeEEEECCCC-CEEEEEECCC---cEEEEEeecCCCCCceeeecCC-CCCcCeEEEEEcC
Q psy6127 338 QPNNVGMIQL-------SGNKPIAAYDPEG-LAFAIGVNSD---SIKLYDVRSYDKGPFASFKCPG-ERGCEWTGLKFSP 405 (515)
Q Consensus 338 ~~~~~~~~~~-------~~~~~~~~~s~~~-~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~-~~~~~i~~l~~sp 405 (515)
+++.+..+.. ...+.+++|+|++ .++++++.++ .|++||++.... ...... .|...|.+++|+|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~----~~~~~~~~~~~~v~~~~~s~ 272 (416)
T 2pm9_A 197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT----PLQTLNQGHQKGILSLDWCH 272 (416)
T ss_dssp TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS----CSBCCCSCCSSCEEEEEECS
T ss_pred CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC----CcEEeecCccCceeEEEeCC
Confidence 9998888855 4668999999997 6899999998 999999987531 233334 6788999999999
Q ss_pred -CCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEc----
Q psy6127 406 -DGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDS-QFVASGSTDGQVHIWNAERGYKVCVLD---- 479 (515)
Q Consensus 406 -~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~sgs~dg~I~iwd~~~~~~~~~~~---- 479 (515)
++++|++++.|+.|++||+++++++..+..|.. .+.+++|+|++ .++++++.||.|++||+.+++......
T Consensus 273 ~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~ 349 (416)
T 2pm9_A 273 QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN---WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET 349 (416)
T ss_dssp SCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS---CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----
T ss_pred CCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC---ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccc
Confidence 999999999999999999999999988887554 48999999999 899999999999999998765322110
Q ss_pred ------------------------------CCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 480 ------------------------------GDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 480 ------------------------------~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
..|..++++++|+|+|++|++++.+ ++||++...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 0156788899999999999999854 999999865
No 43
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.5e-39 Score=318.38 Aligned_cols=297 Identities=15% Similarity=0.211 Sum_probs=242.9
Q ss_pred eeeeEeeeeccccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeeEec--CCCCceeEEEEec-CCCeEEEEEe
Q psy6127 208 VRSYRVAKVFRENTDKINSLDYSSDG-SLLISCSDDDQIIIYDCEQGTSKNTIN--SKKYGVDLIKFTH-SKTTAIHAST 283 (515)
Q Consensus 208 ~~~~~~~~~~~~h~~~I~~l~~spd~-~~lasgs~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~s~ 283 (515)
...+++...+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++..++++
T Consensus 60 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-- 137 (383)
T 3ei3_B 60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS-- 137 (383)
T ss_dssp HTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE--
T ss_pred ccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE--
Confidence 34567777889999999999999999 999999999999999999888777765 6999999999999 45555544
Q ss_pred eCCCeEEEEECCCCeeeEEec---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECCC
Q psy6127 284 KVDATLRYLSLHDNKYVRYFP---GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDPE 359 (515)
Q Consensus 284 ~~d~~v~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~ 359 (515)
+.|+.|++||+.+ ..+..+. +|...|.+++|+|++++|++|+.|+.|++||++ ++.+..+ .+...+.+++|+|+
T Consensus 138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSS
T ss_pred eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCC
Confidence 4799999999986 4444443 345889999999999999999999999999994 5566665 45677999999999
Q ss_pred CC-EEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCceeEEeeccc
Q psy6127 360 GL-AFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSP-DGKLILVSTNGSIIRLFDAFNGNCVQSLSGVL 437 (515)
Q Consensus 360 ~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 437 (515)
++ ++++++.|+.|++||+++...... ..... .|...|.+++|+| ++++|++++.|+.|++||+++++....+..+.
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNS-YIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTC-EEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccc-eEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 99 999999999999999998542211 22222 4778999999999 99999999999999999999998877776543
Q ss_pred cC----C----------CCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCC-CCCCeEEEEECCCCCEEEEee
Q psy6127 438 NN----N----------ASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGD-HPSAVQSLQFNPKYHMLASAC 502 (515)
Q Consensus 438 ~~----~----------~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~las~~ 502 (515)
.. . ..+..++|+|+|++ +|+.||.|++||+.+++++..+.+. |.+.+..++|+|++++|++++
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence 21 1 12344566666666 6778999999999999999999863 456778889999999999987
Q ss_pred C-CEEEEcCCC
Q psy6127 503 S-NMAFWIPTL 512 (515)
Q Consensus 503 ~-dv~iW~~~~ 512 (515)
. .+++|+++.
T Consensus 372 d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 GFNILIWNRED 382 (383)
T ss_dssp TTEEEEEECC-
T ss_pred CCcEEEEecCC
Confidence 3 399999874
No 44
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.6e-38 Score=322.07 Aligned_cols=323 Identities=19% Similarity=0.240 Sum_probs=267.1
Q ss_pred ccccccCCce-eEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCC
Q psy6127 164 SLSSLESPHF-VSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDD 242 (515)
Q Consensus 164 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~d 242 (515)
...++.+|.. ++.++.+.+. +.++++.|+.+++|| ...++++..+.+|.+.|++++|+|++ +|++|+.|
T Consensus 113 ~~~~l~~h~~~v~~~~~~~~~-------~l~sgs~dg~i~vwd--~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~d 182 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFEDN-------YVITGADDKMIRVYD--SINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTD 182 (464)
T ss_dssp EEEEEECCSSSCEEEEEEETT-------EEEEEETTSCEEEEE--TTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETT
T ss_pred ceEEEcCCCCCcEEEEEECCC-------EEEEEcCCCcEEEEE--CCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCC
Confidence 4457788855 4667777654 334788899999999 78889999999999999999999988 99999999
Q ss_pred CeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCee-----------------------
Q psy6127 243 DQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKY----------------------- 299 (515)
Q Consensus 243 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~----------------------- 299 (515)
|+|++||+.+++....+.+|...|.+++|++..+.-.+++++.|+.|++||+.++..
T Consensus 183 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
T 3v7d_B 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence 999999999999999999999999999999643333333445899999999987652
Q ss_pred eEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEECCCcEEEEEee
Q psy6127 300 VRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVR 378 (515)
Q Consensus 300 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~ 378 (515)
...+.+|...|.++ +++++.+++|+.||.|++||+++++.+..+. +...+.+++|+|+++.+++|+.||.|++||++
T Consensus 263 ~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 263 VGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp EEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred EEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 55678899999887 5668999999999999999999999988884 55679999999999999999999999999998
Q ss_pred cCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEE
Q psy6127 379 SYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASG 458 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sg 458 (515)
+++ .......|...|.+++|+ ++++++++.||.|++||+.++....... +...+..++|+|+++++++|
T Consensus 341 ~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 341 NGE-----LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSG 409 (464)
T ss_dssp TTE-----EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEE
T ss_pred CCc-----EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEe
Confidence 754 444556788899999997 5799999999999999999987665553 23337789999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCC
Q psy6127 459 STDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPT 511 (515)
Q Consensus 459 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~ 511 (515)
+ ||.|++||+.+++++......|.+.|++++|++ ..++++++.+ +.+|.++
T Consensus 410 ~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~-~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 410 S-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp E-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEET-TEEEEEEEETTEEEEEEEE
T ss_pred c-CCeEEEEECCCCcEEehhhccCCCcEEEEEecC-CEEEEEEEeCCeEEEEEee
Confidence 8 899999999999999874445899999999983 3444444433 4444443
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-39 Score=318.46 Aligned_cols=296 Identities=15% Similarity=0.191 Sum_probs=221.8
Q ss_pred CCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCC------CcEEEEccceeeeeEe----eeeccccCCcE
Q psy6127 155 GSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSS------RTITKCSENLVRSYRV----AKVFRENTDKI 224 (515)
Q Consensus 155 ~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~------~~~i~~wd~~~~~~~~----~~~~~~h~~~I 224 (515)
..|+...... ..|...|.++.|.|.... |+ +++. |+.+++|+ ...... .....+|...|
T Consensus 29 ~~w~~p~~~p----~~H~~~V~~v~fSpDG~~----la-s~s~d~~~~wd~~v~~~~--~~~~~~~~~~~~~~~~~~~~V 97 (357)
T 4g56_B 29 SAWGRPVTAP----ACMEVQIGAVRYRRDGAL----LL-AASSLSSRTWGGSIWVFK--DPEGAPNESLCTAGVQTEAGV 97 (357)
T ss_dssp ---------------CCCSEEEEEEECSSSCE----EE-EEECSSSSSCCEEEEEES--SCC---CGGGCSEEEECSSCE
T ss_pred cccCCCCCCc----ccccCCEEEEEECCCCCE----EE-EEcCCCCccccCeEEEEE--CCCCCcceeEecccCCCCCCE
Confidence 7787754332 346555677777665432 33 4444 45566665 333332 23345799999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee----EecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeee
Q psy6127 225 NSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKN----TINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYV 300 (515)
Q Consensus 225 ~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~ 300 (515)
++++|+|+++ +++++.||+|+|||+.+++... ...+|...|.+++|+|+++.+++++ .|+.|++||+++++.+
T Consensus 98 ~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs--~dg~v~iwd~~~~~~~ 174 (357)
T 4g56_B 98 TDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG--KDFSVKVWDLSQKAVL 174 (357)
T ss_dssp EEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE--TTSCEEEEETTTTEEE
T ss_pred EEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe--CCCeEEEEECCCCcEE
Confidence 9999999986 5567889999999998876543 3457899999999999999887664 7999999999999999
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCeEEEEe---cCCCeeEEEECCC-CCEEEEEECCCcEEEE
Q psy6127 301 RYFPGHVRKVSSLNLSPVDD-SFISGSYDKTVRVWDLRQPNNVGMIQ---LSGNKPIAAYDPE-GLAFAIGVNSDSIKLY 375 (515)
Q Consensus 301 ~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~s~~-~~~l~~g~~dg~i~i~ 375 (515)
..+.+|...|.+++|+|++. .+++++.|++|++||+++++....+. ....+.+++|+|+ +.++++|+.|+.|++|
T Consensus 175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w 254 (357)
T 4g56_B 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV 254 (357)
T ss_dssp EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence 99999999999999999875 78999999999999999988776553 3345889999997 5689999999999999
Q ss_pred EeecCCCCCceeeecCCCCCcCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEec-CCC
Q psy6127 376 DVRSYDKGPFASFKCPGERGCEWTGLKFSPDG-KLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTP-DSQ 453 (515)
Q Consensus 376 d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~ 453 (515)
|+++++ .......+...|++++|+|++ ++|++++.|++|++||+++++.+..+ + |...|++++|+| +++
T Consensus 255 d~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~---H~~~V~~vafsP~d~~ 325 (357)
T 4g56_B 255 NIKNPD-----SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-S---HRDFVTGVAWSPLDHS 325 (357)
T ss_dssp ESSCGG-----GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-C---CSSCEEEEEECSSSTT
T ss_pred ECCCCc-----EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-C---CCCCEEEEEEeCCCCC
Confidence 998754 333445778899999999987 57899999999999999999877654 3 445599999998 799
Q ss_pred EEEEEeCCCcEEEEECCCCe
Q psy6127 454 FVASGSTDGQVHIWNAERGY 473 (515)
Q Consensus 454 ~l~sgs~dg~I~iwd~~~~~ 473 (515)
+|++++.||+|++|++.+..
T Consensus 326 ~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 326 KFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEEEEETTSCEEEEECC---
T ss_pred EEEEEcCCCeEEEEECCCCC
Confidence 99999999999999997643
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.8e-39 Score=366.65 Aligned_cols=357 Identities=17% Similarity=0.238 Sum_probs=301.3
Q ss_pred hheeecccccccccccCCCCcCCCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE
Q psy6127 133 KIVAKSENMCNLTKLDLPYNKLGSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR 212 (515)
Q Consensus 133 ~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~ 212 (515)
+++|+|+.++.| ++||..+++.+.++.+|...+.++.|.+... +.++++.|+.+++|| +.+++
T Consensus 628 ~~l~s~~~d~~i----------~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-----~l~s~~~d~~v~vwd--~~~~~ 690 (1249)
T 3sfz_A 628 QRIASCGADKTL----------QVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-----YIATCSADKKVKIWD--SATGK 690 (1249)
T ss_dssp SEEEEEETTSCE----------EEEETTTCCEEEEECCCSSCEEEEEECTTSS-----EEEEEETTSEEEEEE--TTTCC
T ss_pred CEEEEEeCCCeE----------EEEECCCCCEEEEeccCCCCEEEEEEecCCC-----EEEEEeCCCeEEEEE--CCCCc
Confidence 678888888988 9999999999999999988888888876543 334677889999999 78889
Q ss_pred eeeeccccCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEE
Q psy6127 213 VAKVFRENTDKINSLDYSS--DGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLR 290 (515)
Q Consensus 213 ~~~~~~~h~~~I~~l~~sp--d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~ 290 (515)
++.++.+|...|.+++|+| ++.++++|+.||.|++||+.+++....+.+|...|.+++|+|+++.+++++ .||.|+
T Consensus 691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s--~dg~v~ 768 (1249)
T 3sfz_A 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS--ADGTLR 768 (1249)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE--SSSEEE
T ss_pred eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE--CCCeEE
Confidence 9999999999999999999 556899999999999999999999999999999999999999999877665 799999
Q ss_pred EEECCCCeeeEEe-------------------------------------------------------cCCCCCeEEEEE
Q psy6127 291 YLSLHDNKYVRYF-------------------------------------------------------PGHVRKVSSLNL 315 (515)
Q Consensus 291 vwd~~~~~~~~~~-------------------------------------------------------~~h~~~v~~l~~ 315 (515)
+||+.+++....+ .+|...|.+++|
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 848 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEE
Confidence 9998876543322 268889999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCc---------
Q psy6127 316 SPVDDSFISGSYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPF--------- 385 (515)
Q Consensus 316 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~--------- 385 (515)
+|+++.+++++.||.|++||+.++.....+ .+...+.+++|+|+++.+++++.||.+++||+........
T Consensus 849 sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 928 (1249)
T 3sfz_A 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928 (1249)
T ss_dssp CSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence 999999999999999999999999888877 4556699999999999999999999999999764211000
Q ss_pred ------------------eeee-----cCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCC
Q psy6127 386 ------------------ASFK-----CPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNAS 442 (515)
Q Consensus 386 ------------------~~~~-----~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 442 (515)
.... ........+.+++|+|+++++++|+.+|.|++||+.+++....+.+|.. .
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~---~ 1005 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK---A 1005 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS---C
T ss_pred EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC---c
Confidence 0000 0011345688999999999999999999999999999998887776544 4
Q ss_pred CEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee-CCEEEEcCCCC
Q psy6127 443 PLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC-SNMAFWIPTLS 513 (515)
Q Consensus 443 i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~-~dv~iW~~~~~ 513 (515)
|.+++|+|+|+++++++.||.|++||+.+++..... . |...|.+++|+|++.+++.+. +.+++|++...
T Consensus 1006 v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 1075 (1249)
T 3sfz_A 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ-A-HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG 1075 (1249)
T ss_dssp CCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB-C-CSSCEEEEEECSSSEEEEEESSSEEEEEETTTT
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe-c-CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC
Confidence 999999999999999999999999999999887533 4 999999999999876554443 44999998654
No 47
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-39 Score=355.62 Aligned_cols=363 Identities=11% Similarity=0.120 Sum_probs=272.1
Q ss_pred hheeecccccccccccCCCCcCCCcchhhcccc-----------ccccCCceeEEEEEEeeccccceeeeeeeCCCCcEE
Q psy6127 133 KIVAKSENMCNLTKLDLPYNKLGSWDFELLHSL-----------SSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTIT 201 (515)
Q Consensus 133 ~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i 201 (515)
++|++|+.+|.| ++||+.+++.. ..+.+|...|.+++|.+.... ..++++.++.+
T Consensus 111 ~~l~sgs~dg~V----------~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~----~l~~g~~dg~v 176 (902)
T 2oaj_A 111 DWMLIGLQNGSM----------IVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG----TVLISYEYVTL 176 (902)
T ss_dssp SEEEEEETTSCE----------EEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE----EEEEECSSCEE
T ss_pred CEEEEEcCCCcE----------EEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC----EEEEEeCCCcE
Confidence 688999999999 99999987753 445677666777888764321 22367788889
Q ss_pred EEccceeeeeEeeeecccc------------------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeE--e--
Q psy6127 202 KCSENLVRSYRVAKVFREN------------------TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNT--I-- 259 (515)
Q Consensus 202 ~~wd~~~~~~~~~~~~~~h------------------~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~--~-- 259 (515)
+|| ++..++.+.+.+| ...|++++|+|||++||+|+.||+|++||+.+++++.. +
T Consensus 177 -lWd--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~ 253 (902)
T 2oaj_A 177 -TYS--LVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE 253 (902)
T ss_dssp -EEE--TTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred -EEE--CCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence 999 7777887777665 57899999999999999999999999999999887653 2
Q ss_pred -cC-------------CCCceeEEEEecC----CCeEEEEEe--------------------------------------
Q psy6127 260 -NS-------------KKYGVDLIKFTHS----KTTAIHAST-------------------------------------- 283 (515)
Q Consensus 260 -~~-------------~~~~v~~~~~~~~----~~~l~~~s~-------------------------------------- 283 (515)
.. |..+|.+++|++. +..++++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 333 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQ 333 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSE
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccc
Confidence 11 2447899999642 223322221
Q ss_pred -------------------------------------eCCCeEEEEECCCCeeeEE------------------------
Q psy6127 284 -------------------------------------KVDATLRYLSLHDNKYVRY------------------------ 302 (515)
Q Consensus 284 -------------------------------------~~d~~v~vwd~~~~~~~~~------------------------ 302 (515)
+.|+.|++||+.++.....
T Consensus 334 ~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~ 413 (902)
T 2oaj_A 334 MKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVP 413 (902)
T ss_dssp EEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEE
T ss_pred eEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcC
Confidence 1235566666655532211
Q ss_pred -----------------ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeE----EEE--------ecCCCeeE
Q psy6127 303 -----------------FPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNV----GMI--------QLSGNKPI 353 (515)
Q Consensus 303 -----------------~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~--------~~~~~~~~ 353 (515)
+.+|...+.+++|+|+++.|++|+.|++|++||+.++... ... .+...+.+
T Consensus 414 ~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~s 493 (902)
T 2oaj_A 414 NKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK 493 (902)
T ss_dssp HHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEE
T ss_pred HHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeE
Confidence 1233334444556788999999999999999999887431 111 23456999
Q ss_pred EEECCCCCEEEEEECCCcEEEEEeecCCCCC----------------------------------------ceeeecCCC
Q psy6127 354 AAYDPEGLAFAIGVNSDSIKLYDVRSYDKGP----------------------------------------FASFKCPGE 393 (515)
Q Consensus 354 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~----------------------------------------~~~~~~~~~ 393 (515)
++|+|++++||+|+.||+|++||+.+.+... .........
T Consensus 494 vafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 573 (902)
T 2oaj_A 494 ISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA 573 (902)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC
T ss_pred EEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc
Confidence 9999999999999999999999998753100 012334456
Q ss_pred CCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEE--eeccc-cCCCCCEEEEEe-----cCC---CEEEEEeCCC
Q psy6127 394 RGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQS--LSGVL-NNNASPLEATFT-----PDS---QFVASGSTDG 462 (515)
Q Consensus 394 ~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~--~~~~~-~~~~~i~~~~~s-----p~g---~~l~sgs~dg 462 (515)
|...|++++|+|+| +||+|+.|++|++||++++..+.. +..+. .+...|++++|+ ||| ++|++|+.|+
T Consensus 574 h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 574 NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 88999999999999 999999999999999988776542 22332 566779999999 886 8999999999
Q ss_pred cEEEEEC---CCCeEEEEEcC----CCCCCeEEEE-EC----------------------CCCCEEEEeeCCEEEEcCCC
Q psy6127 463 QVHIWNA---ERGYKVCVLDG----DHPSAVQSLQ-FN----------------------PKYHMLASACSNMAFWIPTL 512 (515)
Q Consensus 463 ~I~iwd~---~~~~~~~~~~~----~h~~~V~~l~-~s----------------------p~~~~las~~~dv~iW~~~~ 512 (515)
+|++||+ .+|+....+.+ .|.++|.+++ |+ +++.+|+++..++|||++..
T Consensus 653 tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~ 732 (902)
T 2oaj_A 653 EVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGK 732 (902)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTC
T ss_pred cEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCcc
Confidence 9999999 78888888766 1357888777 66 67888888878899999975
Q ss_pred C
Q psy6127 513 S 513 (515)
Q Consensus 513 ~ 513 (515)
.
T Consensus 733 ~ 733 (902)
T 2oaj_A 733 S 733 (902)
T ss_dssp C
T ss_pred c
Confidence 3
No 48
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-38 Score=302.25 Aligned_cols=286 Identities=18% Similarity=0.246 Sum_probs=247.0
Q ss_pred eeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCe
Q psy6127 209 RSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDAT 288 (515)
Q Consensus 209 ~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~ 288 (515)
..+++.+++.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++..+++++ .|+.
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~ 82 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGG--KDTM 82 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEE--TTSC
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEec--CCCe
Confidence 346788899999999999999 9999999999999999999999999999999999999999999999887765 7999
Q ss_pred EEEEECCCC---eeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECC-CCCEE
Q psy6127 289 LRYLSLHDN---KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDP-EGLAF 363 (515)
Q Consensus 289 v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~-~~~~l 363 (515)
+++|++... +.+..+.+|...|.+++| +++.+++++.|+.|++|| .++....+ .+...+.++++.| +++.+
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 999998654 567788899999999999 478999999999999999 55555555 4556688899888 99999
Q ss_pred EEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCC
Q psy6127 364 AIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASP 443 (515)
Q Consensus 364 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i 443 (515)
++++.||.+++||... ........+...+.+++|+|++. +++++.|+.|++||+++++.+..+..|.. .+
T Consensus 159 ~~~~~d~~i~i~d~~~------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i 228 (313)
T 3odt_A 159 LTASADKTIKLWQNDK------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES---FV 228 (313)
T ss_dssp EEEETTSCEEEEETTE------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS---CE
T ss_pred EEEECCCCEEEEecCc------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc---eE
Confidence 9999999999999433 12222344788999999999998 89999999999999999999988876544 49
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee-CCEEEEcCCCC
Q psy6127 444 LEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC-SNMAFWIPTLS 513 (515)
Q Consensus 444 ~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~-~dv~iW~~~~~ 513 (515)
.+++|+|++ .+++++.||.|++||+.+++++..+.. |...|++++|+|++++++++. +.+++|+++..
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL-PAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC-SSSCEEEEEECTTSCEEEEETTSCEEEEESCGG
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec-cCceEEEEEEccCCCEEEEeCCCcEEEEeCCCC
Confidence 999999999 588999999999999999999999988 889999999999999655333 34999998753
No 49
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.3e-39 Score=327.16 Aligned_cols=299 Identities=19% Similarity=0.256 Sum_probs=238.1
Q ss_pred eEeeeeccccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeee--eEecCCCCceeEEEEec-CCCeEEEEEeeCC
Q psy6127 211 YRVAKVFRENTDKINSLDYSS-DGSLLISCSDDDQIIIYDCEQGTSK--NTINSKKYGVDLIKFTH-SKTTAIHASTKVD 286 (515)
Q Consensus 211 ~~~~~~~~~h~~~I~~l~~sp-d~~~lasgs~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~s~~~d 286 (515)
++......+|...|+|++|+| ++++||+|+.||+|+|||+.+++.. ..+.+|...|.+++|+| ++..++++ +.|
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~--s~D 186 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS--SME 186 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE--CSS
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE--eCC
Confidence 444556678999999999999 6679999999999999999877544 34568999999999998 45655544 589
Q ss_pred CeEEEEECCCCeeeEEecC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCC-EE
Q psy6127 287 ATLRYLSLHDNKYVRYFPG--HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGL-AF 363 (515)
Q Consensus 287 ~~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~-~l 363 (515)
++|++||++++........ +...+.+++|+|++++|++|+.||.|++||++.........+...+.+++|+|++. ++
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEE
Confidence 9999999987765444433 34567899999999999999999999999997654333334566799999999876 78
Q ss_pred EEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCC---
Q psy6127 364 AIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN--- 440 (515)
Q Consensus 364 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~--- 440 (515)
++|+.|+.|++||++..... ..+.....|...|++++|+|+|++|++++.|+.|++||+.++++...+..+....
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGK--ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344 (435)
T ss_dssp EEEETTSBCCEEETTTCCSS--SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred EEecCcceeeEEeccccccc--ceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence 89999999999999875432 1223345678899999999999999999999999999999998887776554321
Q ss_pred CCCEEEEEecCCCEEEEEe------------CCCcEEEEECCCCeEEEEEcCCCCCCeEEE-EECCCCCEEEEeeCC-EE
Q psy6127 441 ASPLEATFTPDSQFVASGS------------TDGQVHIWNAERGYKVCVLDGDHPSAVQSL-QFNPKYHMLASACSN-MA 506 (515)
Q Consensus 441 ~~i~~~~~sp~g~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l-~~sp~~~~las~~~d-v~ 506 (515)
..+....|+|++.++++++ .++.|++||..+++.+..+...|...|.++ +|+|+|.+||+|+++ ++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~ 424 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHIL 424 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEE
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEE
Confidence 1234567777777776664 335799999999999999876688899987 699999999998754 99
Q ss_pred EEcCCCC
Q psy6127 507 FWIPTLS 513 (515)
Q Consensus 507 iW~~~~~ 513 (515)
||+++.+
T Consensus 425 iW~~~~g 431 (435)
T 4e54_B 425 IWSQQEA 431 (435)
T ss_dssp ECCCC--
T ss_pred EEECCcC
Confidence 9998764
No 50
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.2e-38 Score=310.68 Aligned_cols=289 Identities=15% Similarity=0.204 Sum_probs=244.2
Q ss_pred ccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEEC
Q psy6127 217 FRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGT--SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL 294 (515)
Q Consensus 217 ~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~ 294 (515)
+..|.++|++++|+|++++|++|+.|+.|++||+.+++ ....+.+|...|.+++|+|+++.+++++ .|+.|++||+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~ 81 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG--TDRNAYVWTL 81 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE--TTSCEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc--CCCeEEEEEC
Confidence 45699999999999999999999999999999999887 8889999999999999999999887665 7999999999
Q ss_pred CCCeeeEE--ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCe---EEEE--ecCCCeeEEEECCCCCEEEEEE
Q psy6127 295 HDNKYVRY--FPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN---VGMI--QLSGNKPIAAYDPEGLAFAIGV 367 (515)
Q Consensus 295 ~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~--~~~~~~~~~~~s~~~~~l~~g~ 367 (515)
++++.... +..|...|.+++|+|++++|++++.|+.|++||++.++. ...+ .+...+.+++|+|+++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 98875443 467999999999999999999999999999999998873 2333 3456799999999999999999
Q ss_pred CCCcEEEEEeecCCC-------------CCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEee
Q psy6127 368 NSDSIKLYDVRSYDK-------------GPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLS 434 (515)
Q Consensus 368 ~dg~i~i~d~~~~~~-------------~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 434 (515)
.||.|++||++.... ...........|...+.+++|+|++++|++++.|+.|++||+++++++..+.
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 241 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 241 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence 999999999753210 0112334445778899999999999999999999999999999999998888
Q ss_pred ccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCC--CeE--------------------------------E-----
Q psy6127 435 GVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAER--GYK--------------------------------V----- 475 (515)
Q Consensus 435 ~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~--~~~--------------------------------~----- 475 (515)
.+. ..+.+++|+|+++++++| .|+.|++|++.+ ++. .
T Consensus 242 ~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
T 1k8k_C 242 SET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317 (372)
T ss_dssp CSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred cCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence 654 349999999999988888 899999999987 431 1
Q ss_pred -EEEcCCCCCCeEEEEEC-CCC---CEEEEeeCC--EEEEcCC
Q psy6127 476 -CVLDGDHPSAVQSLQFN-PKY---HMLASACSN--MAFWIPT 511 (515)
Q Consensus 476 -~~~~~~h~~~V~~l~~s-p~~---~~las~~~d--v~iW~~~ 511 (515)
..+...|.++|++++|+ ++| .+|++++.| +++|+++
T Consensus 318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred cccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 23332499999999977 576 999999866 9999975
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-37 Score=303.51 Aligned_cols=295 Identities=18% Similarity=0.261 Sum_probs=249.8
Q ss_pred CCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE---eeeecc--ccCCcEEEEEE
Q psy6127 155 GSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR---VAKVFR--ENTDKINSLDY 229 (515)
Q Consensus 155 ~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~---~~~~~~--~h~~~I~~l~~ 229 (515)
..|+...........+|...+.++.+.+.... ++ +++ ++.+++|+ +...+ ....+. +|...|.+++|
T Consensus 34 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~-~~~-dg~i~iw~--~~~~~~~~~~~~~~~~~~~~~v~~~~~ 105 (337)
T 1gxr_A 34 IGPGIPRHARQINTLNHGEVVCAVTISNPTRH----VY-TGG-KGCVKVWD--ISHPGNKSPVSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp SSTTCCSEEEEEEEECCSSCCCEEEECSSSSE----EE-EEC-BSEEEEEE--TTSTTCCSCSEEEECSCTTSBEEEEEE
T ss_pred eccccCCccccceeccCCCceEEEEEecCCcE----EE-EcC-CCeEEEEE--CCCCCceeeeecccccCCCCcEEEEEE
Confidence 66766655544444567666777777655431 33 444 88999998 43332 223333 89999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCe--eeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCC
Q psy6127 230 SSDGSLLISCSDDDQIIIYDCEQGT--SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHV 307 (515)
Q Consensus 230 spd~~~lasgs~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~ 307 (515)
+|++++|++++.||.|++||+.+++ ....+..|...+.+++|+|+++.+++++ .|+.|++||+++++.+..+.+|.
T Consensus 106 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~v~~~d~~~~~~~~~~~~~~ 183 (337)
T 1gxr_A 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCS
T ss_pred cCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCceeeeeeccc
Confidence 9999999999999999999999877 6677888999999999999998887665 79999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCcee
Q psy6127 308 RKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFAS 387 (515)
Q Consensus 308 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 387 (515)
..|.+++|+|+++.|++++.||.|++||+++++....+.+...+.+++|+|+++.+++++.++.+++||++..+ .
T Consensus 184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-----~ 258 (337)
T 1gxr_A 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-----K 258 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-----E
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-----e
Confidence 99999999999999999999999999999999999988888889999999999999999999999999998754 2
Q ss_pred eecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEE
Q psy6127 388 FKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIW 467 (515)
Q Consensus 388 ~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iw 467 (515)
. ....|...+.+++|+|+++++++++.||.|++||+.+++.+.... +...+.+++|+|++++|++++.||.|++|
T Consensus 259 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 259 Y-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp E-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred E-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec----CCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 2 234677889999999999999999999999999999998875543 34459999999999999999999999999
Q ss_pred EC
Q psy6127 468 NA 469 (515)
Q Consensus 468 d~ 469 (515)
++
T Consensus 334 ~~ 335 (337)
T 1gxr_A 334 EV 335 (337)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 52
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-38 Score=316.99 Aligned_cols=300 Identities=14% Similarity=0.182 Sum_probs=245.0
Q ss_pred CCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEC----CCCe------eeeEecC---
Q psy6127 196 SSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGS-LLISCSDDDQIIIYDC----EQGT------SKNTINS--- 261 (515)
Q Consensus 196 ~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~-~lasgs~dg~i~iwd~----~~~~------~~~~~~~--- 261 (515)
....++..|+ .+..........|.+.|++++|+|+++ +||+|+.||.|++||+ .+++ ....+..
T Consensus 22 ~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 1r5m_A 22 DTNSIDSSDD--LDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFA 99 (425)
T ss_dssp --------------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCC
T ss_pred cccccccccc--chhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccc
Confidence 3344455666 333333333445679999999999999 9999999999999999 8887 4555544
Q ss_pred -------CCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy6127 262 -------KKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW 334 (515)
Q Consensus 262 -------~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 334 (515)
|...|.+++|+|+++.+++++ .|+.|++|| .+++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 100 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 100 LSASSGKTTNQVTCLAWSHDGNSIVTGV--ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp CC------CBCEEEEEECTTSSEEEEEE--TTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ccccccCCCCceEEEEEcCCCCEEEEEe--CCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 677999999999999887665 799999999 6788889999999999999999999999999999999999
Q ss_pred EcCCCCeEEEEecCCC----------------eeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCe
Q psy6127 335 DLRQPNNVGMIQLSGN----------------KPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEW 398 (515)
Q Consensus 335 d~~~~~~~~~~~~~~~----------------~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 398 (515)
|+++++.+..+..+.. +.+++|+|++ .+++++.+|.|++||++... .......|...+
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~i 250 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-----PTGKLIGHHGPI 250 (425)
T ss_dssp ETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-----CSEEECCCSSCE
T ss_pred ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-----eeeeeccCCCce
Confidence 9999998888754433 7788999875 58888999999999998754 222334677899
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy6127 399 TGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVL 478 (515)
Q Consensus 399 ~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~ 478 (515)
.+++|+|+++++++++.|+.|++||+++++....+..+. ..+.+++|+|++ ++++++.||.|++||+.+++.+..+
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 326 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS 326 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence 999999999999999999999999999998888887644 449999999999 9999999999999999999999999
Q ss_pred cCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCC
Q psy6127 479 DGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPT 511 (515)
Q Consensus 479 ~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~ 511 (515)
.. |...|++++|+|++.++++++.+ +++|++.
T Consensus 327 ~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 327 IV-DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EC-TTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred cc-CCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 87 99999999999999999999854 9999975
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.1e-38 Score=312.45 Aligned_cols=288 Identities=16% Similarity=0.264 Sum_probs=239.3
Q ss_pred eccccCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCeeeeEecC-----CCCceeEEEEecCCC----eEEEEE
Q psy6127 216 VFRENTDKINSLDYSSD----GSLLISCSDDDQIIIYDCEQGTSKNTINS-----KKYGVDLIKFTHSKT----TAIHAS 282 (515)
Q Consensus 216 ~~~~h~~~I~~l~~spd----~~~lasgs~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~----~l~~~s 282 (515)
...+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|++. .++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~- 91 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA- 91 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE-
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe-
Confidence 34589999999999984 45566666677999999998877766653 557899999999943 44443
Q ss_pred eeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCeEEEE----ecCCCeeEEEEC
Q psy6127 283 TKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSP-VDDSFISGSYDKTVRVWDLRQPNNVGMI----QLSGNKPIAAYD 357 (515)
Q Consensus 283 ~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~s 357 (515)
+.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++....+ .+...+.+++|+
T Consensus 92 -~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 -GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp -ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred -cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 5899999999999999999999999999999999 8999999999999999999999988887 456779999999
Q ss_pred CCCCEEEEEECCCcEEEEEeecCCCCCc-----------------------eeeecCCCCCcCeEEEEEcCCCCEEEEEE
Q psy6127 358 PEGLAFAIGVNSDSIKLYDVRSYDKGPF-----------------------ASFKCPGERGCEWTGLKFSPDGKLILVST 414 (515)
Q Consensus 358 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~-----------------------~~~~~~~~~~~~i~~l~~sp~~~~l~~~s 414 (515)
|+++++++++.||.|++||+++.+.... ........|...|.+++|+ ++++++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 9999999999999999999986421000 0011123377889999998 67999999
Q ss_pred CCCcEEEEECCCCce--------------eEEeeccccCCCCCEEEEEecC--CCEEEEEeCCCcEEEEECCCCe----E
Q psy6127 415 NGSIIRLFDAFNGNC--------------VQSLSGVLNNNASPLEATFTPD--SQFVASGSTDGQVHIWNAERGY----K 474 (515)
Q Consensus 415 ~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~i~~~~~sp~--g~~l~sgs~dg~I~iwd~~~~~----~ 474 (515)
.|+.|++||+.++.. +..+.. +...+.+++|+|+ +++|++|+.||.|++||+.+++ .
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY---SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC---SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccc---cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence 999999999987754 444544 4445899999999 9999999999999999999875 4
Q ss_pred EEEEcCCC--CCCeEEEEECCCCCEEEEeeCC--EEEEcCC
Q psy6127 475 VCVLDGDH--PSAVQSLQFNPKYHMLASACSN--MAFWIPT 511 (515)
Q Consensus 475 ~~~~~~~h--~~~V~~l~~sp~~~~las~~~d--v~iW~~~ 511 (515)
...+.. | ...|++++|+|++++|++++.| +++|++.
T Consensus 326 ~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 326 CTTLTH-HKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECC-TTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ceEEcc-cccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 456766 6 7999999999999999999866 9999975
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.8e-38 Score=313.64 Aligned_cols=289 Identities=19% Similarity=0.241 Sum_probs=236.0
Q ss_pred CCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCC------------------cEEEEEEcC
Q psy6127 170 SPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTD------------------KINSLDYSS 231 (515)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~------------------~I~~l~~sp 231 (515)
+|...|.++.|.+.... ++ +++ +..+++|+ +..++.+..+.+|.. .|.+++|+|
T Consensus 62 ~h~~~V~~v~fspdg~~----la-~g~-~~~v~i~~--~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEY----LA-TGC-NKTTQVYR--VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp ECSSCCCEEEECTTSSE----EE-EEC-BSCEEEEE--TTTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred CCCCEEEEEEECCCCCE----EE-EEc-CCcEEEEE--ecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 36555666666654331 33 333 35688898 666777777766542 499999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeE
Q psy6127 232 DGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVS 311 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~ 311 (515)
||++||+|+.|++|++||+.+++....+.+|...|.+++|+|++..+++++ .|++|++||+++++....+. +...+.
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~-~~~~v~ 210 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS--GDRTVRIWDLRTGQCSLTLS-IEDGVT 210 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec--CCCcEEEEECCCCeeEEEEE-cCCCcE
Confidence 999999999999999999999999999999999999999999999877654 79999999999999888776 567899
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCCCeEEEE--------ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCC
Q psy6127 312 SLNLSP-VDDSFISGSYDKTVRVWDLRQPNNVGMI--------QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDK 382 (515)
Q Consensus 312 ~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~ 382 (515)
+++|+| ++++|++|+.|+.|++||+++++.+..+ .+...+.+++|+|+++++++|+.|+.|++||++....
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC
Confidence 999999 8999999999999999999999887766 2445689999999999999999999999999986432
Q ss_pred CC-------ceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEec-----
Q psy6127 383 GP-------FASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTP----- 450 (515)
Q Consensus 383 ~~-------~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp----- 450 (515)
.. .........|...|.+++|+|++.+|++|+.|+.|++||..+++++..+.+|.. .|.+++|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~---~v~~v~~~~~~~~~ 367 (393)
T 1erj_A 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN---SVISVAVANGSSLG 367 (393)
T ss_dssp ----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS---CEEEEEECSSCTTC
T ss_pred cccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC---CEEEEEecCCcCcC
Confidence 11 011222346778899999999999999999999999999999999988887654 499999886
Q ss_pred -CCCEEEEEeCCCcEEEEECCCC
Q psy6127 451 -DSQFVASGSTDGQVHIWNAERG 472 (515)
Q Consensus 451 -~g~~l~sgs~dg~I~iwd~~~~ 472 (515)
++++|++|+.||+|++|++...
T Consensus 368 p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 368 PEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCEEEEECCCCcEEECccccc
Confidence 6889999999999999998643
No 55
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=312.06 Aligned_cols=290 Identities=16% Similarity=0.221 Sum_probs=238.4
Q ss_pred eeccccCCcEEEEEEcCCCCEE-EEEeC---CCeEEEEECCCCeeeeEe-cCCCCceeEEEEecC---CCeEEEEEeeCC
Q psy6127 215 KVFRENTDKINSLDYSSDGSLL-ISCSD---DDQIIIYDCEQGTSKNTI-NSKKYGVDLIKFTHS---KTTAIHASTKVD 286 (515)
Q Consensus 215 ~~~~~h~~~I~~l~~spd~~~l-asgs~---dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~s~~~d 286 (515)
+.+++|.+.|.+++|+|+++.+ ++|+. ||.|++||+.+++..... ..|...|.+++|+|+ +..+++++ .|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~d 89 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD--FG 89 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE--TT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec--CC
Confidence 4567899999999999999655 56655 899999999988765443 378899999999998 57666554 79
Q ss_pred CeEEEEECCCCe-eeEEecCCCCCeEEEEE------cCCCCEEEEEeCCCcEEEEEcCCCC-eEEEEecC-----CCeeE
Q psy6127 287 ATLRYLSLHDNK-YVRYFPGHVRKVSSLNL------SPVDDSFISGSYDKTVRVWDLRQPN-NVGMIQLS-----GNKPI 353 (515)
Q Consensus 287 ~~v~vwd~~~~~-~~~~~~~h~~~v~~l~~------~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~-----~~~~~ 353 (515)
+.|++||+.+++ .+..+.+|...|.+++| +|+++.|++++.||.|++||+++++ ....+... ..+.+
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 999999999988 88899999999999955 6789999999999999999999987 56666332 25777
Q ss_pred EE----ECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcC---CCCEEEEEECCCcEEEEECCC
Q psy6127 354 AA----YDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSP---DGKLILVSTNGSIIRLFDAFN 426 (515)
Q Consensus 354 ~~----~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp---~~~~l~~~s~dg~i~iwd~~~ 426 (515)
++ |+|+++++++++.||.|++||+++.+ . .....+...+.+++|+| +++++++++.||.|++||+++
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-----L-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----E-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCc-----e-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 77 78999999999999999999998754 1 22234567899999999 999999999999999999988
Q ss_pred CceeEEee--ccccCCCCCEEEEEecCCC-EEEEEeCCCcEEEEECCCC-------------------eEEEEEcCCCCC
Q psy6127 427 GNCVQSLS--GVLNNNASPLEATFTPDSQ-FVASGSTDGQVHIWNAERG-------------------YKVCVLDGDHPS 484 (515)
Q Consensus 427 ~~~~~~~~--~~~~~~~~i~~~~~sp~g~-~l~sgs~dg~I~iwd~~~~-------------------~~~~~~~~~h~~ 484 (515)
++....+. ....+...+.+++|+|+++ ++++++.||.|++||+.++ +++..+.+ |.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~ 322 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL-STQ 322 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC-CSS
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc-CCC
Confidence 76655544 1123455699999999998 8999999999999998754 46777777 999
Q ss_pred CeEEEEECCCCCEEE-EeeCC--EEEEcCCCC
Q psy6127 485 AVQSLQFNPKYHMLA-SACSN--MAFWIPTLS 513 (515)
Q Consensus 485 ~V~~l~~sp~~~~la-s~~~d--v~iW~~~~~ 513 (515)
+|++++|+|++++++ +++.| +++|++...
T Consensus 323 ~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 323 PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 999999999999998 67754 999998753
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.3e-37 Score=337.00 Aligned_cols=291 Identities=20% Similarity=0.315 Sum_probs=258.5
Q ss_pred EeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEE
Q psy6127 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRY 291 (515)
Q Consensus 212 ~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~v 291 (515)
+..+.+.+|.+.|++++|+|++++||+|+.||.|++||+.+++.+..+.+|..+|.+++|+|+++.+++++ .|+.|++
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~v 81 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS--DDFRIRV 81 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE--TTSEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe--CCCeEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999887765 6999999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-CeEEEE-ecCCCeeEEEECC-CCCEEEEEEC
Q psy6127 292 LSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQP-NNVGMI-QLSGNKPIAAYDP-EGLAFAIGVN 368 (515)
Q Consensus 292 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~-~~~~~~~~~~~s~-~~~~l~~g~~ 368 (515)
||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||++++ .....+ .+...+.+++|+| +++.+++++.
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999987 444555 4556799999999 8999999999
Q ss_pred CCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcC--CCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEE
Q psy6127 369 SDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSP--DGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEA 446 (515)
Q Consensus 369 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~ 446 (515)
||.|++||++.... .......+...+..++|+| ++.++++++.||.|++||+.+++.+..+..|.. .+.++
T Consensus 162 dg~v~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~v~~~ 234 (814)
T 3mkq_A 162 DRTVKVWSLGQSTP----NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS---NVSFA 234 (814)
T ss_dssp TSEEEEEETTCSSC----SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS---CEEEE
T ss_pred CCeEEEEECCCCcc----eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC---CEEEE
Confidence 99999999976542 2222344557788999999 999999999999999999999999888876544 49999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCC--EEEEeeCC-EEEEcCCC
Q psy6127 447 TFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYH--MLASACSN-MAFWIPTL 512 (515)
Q Consensus 447 ~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~las~~~d-v~iW~~~~ 512 (515)
+|+|+++++++++.||.|++||+.+++.+..+.. |...|++++|+|++. ++++++.+ +.+|++..
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV-GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEECC-SSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec-CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 9999999999999999999999999999999988 889999999999987 56666544 88888654
No 57
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=313.36 Aligned_cols=289 Identities=16% Similarity=0.304 Sum_probs=232.7
Q ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----------eeeEecCCC------------CceeEEEEecCC
Q psy6127 219 ENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGT-----------SKNTINSKK------------YGVDLIKFTHSK 275 (515)
Q Consensus 219 ~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 275 (515)
.|.+.|++++|+|+|++||+|+.||.|++||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 368999999999999999999999999999999876 477888998 889999999998
Q ss_pred --CeEEEEEeeCCCeEEEEECCCCeee---------------------------------------EE-ecCCCCCeEEE
Q psy6127 276 --TTAIHASTKVDATLRYLSLHDNKYV---------------------------------------RY-FPGHVRKVSSL 313 (515)
Q Consensus 276 --~~l~~~s~~~d~~v~vwd~~~~~~~---------------------------------------~~-~~~h~~~v~~l 313 (515)
..++++ +.|+.|++||+.+++.. .. ..+|...|.++
T Consensus 106 ~~~~l~s~--s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAAQFLLS--TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSSEEEEE--ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CcceEEEe--CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 556555 47999999999775432 12 36899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCC-CCeEEEE--------ecCCCeeEEEECCCC-CEEEEEECCCcEEEEEeecCCCC
Q psy6127 314 NLSPVDDSFISGSYDKTVRVWDLRQ-PNNVGMI--------QLSGNKPIAAYDPEG-LAFAIGVNSDSIKLYDVRSYDKG 383 (515)
Q Consensus 314 ~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~--------~~~~~~~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~ 383 (515)
+|+|++++|++| .|+.|++||+++ ++....+ .+...+.+++|+|++ +++++|+.||.|++||+++....
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 999999999998 799999999994 4444433 345669999999998 99999999999999999886521
Q ss_pred CceeeecCCCCCc------------CeEEEEEcCCCCEEEEEECCCcEEEEECCC-CceeEEeeccccCCC---------
Q psy6127 384 PFASFKCPGERGC------------EWTGLKFSPDGKLILVSTNGSIIRLFDAFN-GNCVQSLSGVLNNNA--------- 441 (515)
Q Consensus 384 ~~~~~~~~~~~~~------------~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~--------- 441 (515)
.. .......+.. .|.+++|+|++++|++++. +.|++||+++ ++++..+..|.....
T Consensus 263 ~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 263 DR-HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp CT-TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred cc-eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 10 0122233333 8999999999999999999 9999999997 888888887654221
Q ss_pred ---CCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcC-------------------------------CCCCCeE
Q psy6127 442 ---SPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDG-------------------------------DHPSAVQ 487 (515)
Q Consensus 442 ---~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------------------------------~h~~~V~ 487 (515)
.+..++|+|++++|++|+.||.|++||+.+++.+..... .+...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 134499999999999999999999999999887642210 1345789
Q ss_pred EEEECCCCCEEEEeeCC-EEEEcCCC
Q psy6127 488 SLQFNPKYHMLASACSN-MAFWIPTL 512 (515)
Q Consensus 488 ~l~~sp~~~~las~~~d-v~iW~~~~ 512 (515)
.++|+|++.+||+++.+ +.+|.-+.
T Consensus 421 ~~~~~p~~~~la~~~~~~~~~~~~~~ 446 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNNLYIFQDKV 446 (447)
T ss_dssp EEEECSSSSEEEEECSSCEEEEECCC
T ss_pred EEEECCCCCEEEEEecceeeeecccc
Confidence 99999999999998865 88987543
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-37 Score=313.80 Aligned_cols=314 Identities=15% Similarity=0.153 Sum_probs=256.1
Q ss_pred hheeecccccccccccCCCCcCCCcchhhccccccccCCcee-EEEEEEeeccccceeeeeeeCCCCcEEEEccceeeee
Q psy6127 133 KIVAKSENMCNLTKLDLPYNKLGSWDFELLHSLSSLESPHFV-SLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSY 211 (515)
Q Consensus 133 ~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~ 211 (515)
+.|+++..++.| ++||..+++....+..+... +..++++++. + ++++.++.+++|+ +...
T Consensus 69 ~~l~~~~~d~~v----------~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------l-~~~~~dg~i~iwd--~~~~ 129 (420)
T 3vl1_A 69 SHLYKARLDGHD----------FLFNTIIRDGSKMLKRADYTAVDTAKLQMRR------F-ILGTTEGDIKVLD--SNFN 129 (420)
T ss_dssp TTEEEEEETTEE----------EEEECCSEETTTTSCSCCEEEEEEECSSSCE------E-EEEETTSCEEEEC--TTSC
T ss_pred CeEEEEEcCCcE----------EEEEecccceeeEEecCCceEEEEEecCCCE------E-EEEECCCCEEEEe--CCCc
Confidence 678899999999 99999999998888887443 2233333332 3 3667788899999 7788
Q ss_pred EeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEE
Q psy6127 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRY 291 (515)
Q Consensus 212 ~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~v 291 (515)
++...+.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++..+++++ .|+.|++
T Consensus 130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~d~~v~i 207 (420)
T 3vl1_A 130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS--LDGTIRL 207 (420)
T ss_dssp EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEE--TTSCEEE
T ss_pred ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEc--CCCcEEE
Confidence 88899999999999999999999999999999999999999999999999999999999999999887654 7999999
Q ss_pred EECCCCeeeEEecC---CCCCeEEEE---------------------EcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-
Q psy6127 292 LSLHDNKYVRYFPG---HVRKVSSLN---------------------LSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ- 346 (515)
Q Consensus 292 wd~~~~~~~~~~~~---h~~~v~~l~---------------------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~- 346 (515)
||+++++.+..+.. |...+.+++ |+|++++|++|+.||.|++||+++++....+.
T Consensus 208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence 99999999988875 444555554 57889999999999999999999999887774
Q ss_pred -cCCCeeEEEECCCCC-EEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q psy6127 347 -LSGNKPIAAYDPEGL-AFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDA 424 (515)
Q Consensus 347 -~~~~~~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~ 424 (515)
+...+.+++|+|++. ++++|+.||.|++||+++.... ...+ ..++...+.++.+ |++++|++++.|+.|++|++
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~-~~~~--~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP-VGEF--LINEGTPINNVYF-AAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC-SEEE--EESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc-hhhh--hccCCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence 446699999999999 9999999999999999876421 1222 2346678888855 57789999999999999998
Q ss_pred CCCceeEEee------ccccCCCCCEEEEEecCCC---EEEEEeCCCcEEEEECCC
Q psy6127 425 FNGNCVQSLS------GVLNNNASPLEATFTPDSQ---FVASGSTDGQVHIWNAER 471 (515)
Q Consensus 425 ~~~~~~~~~~------~~~~~~~~i~~~~~sp~g~---~l~sgs~dg~I~iwd~~~ 471 (515)
........+. ....+...+.+++|+|+++ .+++++.+|.+.+|++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 8742221111 1122445599999999999 777778899999999865
No 59
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.7e-38 Score=309.82 Aligned_cols=287 Identities=10% Similarity=0.106 Sum_probs=224.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCee----------eeEecCCCCceeEEEEecCCCeEEEEE-
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDD-------QIIIYDCEQGTS----------KNTINSKKYGVDLIKFTHSKTTAIHAS- 282 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg-------~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s- 282 (515)
.-||++++|+||+++|++|+.|. .|++|++..+.. ...+..|...+.++++. ++.++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999998643 599999876532 12456788888887765 44555432
Q ss_pred --------eeCCCeEEEEECCCCeee----EEe-----cCCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCCeEE
Q psy6127 283 --------TKVDATLRYLSLHDNKYV----RYF-----PGHVRKVSSLNLSPVDDSFISG--SYDKTVRVWDLRQPNNVG 343 (515)
Q Consensus 283 --------~~~d~~v~vwd~~~~~~~----~~~-----~~h~~~v~~l~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~ 343 (515)
++.|+.+++|++.+.... ... ..+...+.+++|+|||++++++ +.|++|++||+++++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 235888999998664321 111 2345679999999999987654 478999999999999999
Q ss_pred EEecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCC----cE
Q psy6127 344 MIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS----II 419 (515)
Q Consensus 344 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg----~i 419 (515)
.+.+...+.+++|+|+|+++++++. +.+.+|+..++.. ........|...+.+++|+|+++++++++.|+ .+
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~---~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSC---IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCE---EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred EeCCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcc---eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence 9988888999999999999999875 5566777665431 12233456788899999999999999999877 68
Q ss_pred EEEECCCCceeE-EeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEE
Q psy6127 420 RLFDAFNGNCVQ-SLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHML 498 (515)
Q Consensus 420 ~iwd~~~~~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 498 (515)
+.|++..+.... .......+...|++++|+|||++||+|+.|++|+|||+.+++++..+...|.++|++++|+|||++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred eecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE
Confidence 889987765422 1122233455699999999999999999999999999999999998754499999999999999999
Q ss_pred EEeeCC--EEEEcCCCC
Q psy6127 499 ASACSN--MAFWIPTLS 513 (515)
Q Consensus 499 as~~~d--v~iW~~~~~ 513 (515)
|+++.| ++||+++..
T Consensus 328 aS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 328 ASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSEEEEEECCTT
T ss_pred EEEeCCCeEEEEEcCCC
Confidence 999966 999998643
No 60
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-36 Score=297.13 Aligned_cols=302 Identities=19% Similarity=0.215 Sum_probs=249.9
Q ss_pred cchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceee-----eeEeeeeccccCCcEEEEEEcC
Q psy6127 157 WDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVR-----SYRVAKVFRENTDKINSLDYSS 231 (515)
Q Consensus 157 wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~-----~~~~~~~~~~h~~~I~~l~~sp 231 (515)
+..++.+...+|+||...|.+++|.|.... +.++++.|+.|++|+ +. ...+.+++++|...|.+++|+|
T Consensus 23 ~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~----~l~S~s~D~~i~vWd--~~~~~~~~~~~~~~l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 23 MMTEQMTLRGTLKGHNGWVTQIATTPQFPD----MILSASRDKTIIMWK--LTRDETNYGIPQRALRGHSHFVSDVVISS 96 (340)
T ss_dssp ---CEEEEEEEECCCSSCEEEEEECTTCTT----EEEEEETTSCEEEEE--ECCSSSCSEEEEEEECCCSSCEEEEEECT
T ss_pred ccCCceEEEEEECCccCCEEEEEEeCCCCC----EEEEEcCCCeEEEEE--CCCCCcccceeeEEEeCCCCCEEEEEECC
Confidence 345556667789999888999998865322 344788899999998 43 2456788999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCee-eEEecCCCCCe
Q psy6127 232 DGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKY-VRYFPGHVRKV 310 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~-~~~~~~h~~~v 310 (515)
++++|++|+.|+.|++|+............+...+....+++++..+++++ .|+.+++||...... .....+|...+
T Consensus 97 dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~d~~~~~~d~~~~~~~~~~~~~~~~~v 174 (340)
T 4aow_A 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS--RDKTIKLWNTLGVCKYTVQDESHSEWV 174 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeec--CCCeEEEEEeCCCceEEEEeccccCcc
Confidence 999999999999999999999999988888999999999999999887664 799999999876654 34567899999
Q ss_pred EEEEEcCCC--CEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCcee
Q psy6127 311 SSLNLSPVD--DSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFAS 387 (515)
Q Consensus 311 ~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 387 (515)
..++|++++ ..+++++.|+.|++||+++++....+. +...+.+++|+|++++|++|+.||.|++||+++.. .
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-----~ 249 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-----H 249 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-----E
T ss_pred cceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc-----e
Confidence 999999875 478999999999999999999888874 55679999999999999999999999999998753 2
Q ss_pred eecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecc------ccCCCCCEEEEEecCCCEEEEEeCC
Q psy6127 388 FKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGV------LNNNASPLEATFTPDSQFVASGSTD 461 (515)
Q Consensus 388 ~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~i~~~~~sp~g~~l~sgs~d 461 (515)
.... .+...+.+++|+|++.++ +++.|+.|++||++++..+..+... ..+...|++++|+|+|++|++|+.|
T Consensus 250 ~~~~-~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 327 (340)
T 4aow_A 250 LYTL-DGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327 (340)
T ss_dssp EEEE-ECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred eeee-cCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 2222 234578999999998655 5667899999999998877766532 2355669999999999999999999
Q ss_pred CcEEEEECCCCe
Q psy6127 462 GQVHIWNAERGY 473 (515)
Q Consensus 462 g~I~iwd~~~~~ 473 (515)
|.|+|||+.+|+
T Consensus 328 g~v~iW~~~tGt 339 (340)
T 4aow_A 328 NLVRVWQVTIGT 339 (340)
T ss_dssp SCEEEEEEEC--
T ss_pred CEEEEEeCCCcC
Confidence 999999999885
No 61
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-38 Score=315.38 Aligned_cols=288 Identities=13% Similarity=0.164 Sum_probs=226.7
Q ss_pred eccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEE
Q psy6127 216 VFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQG--TSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLS 293 (515)
Q Consensus 216 ~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd 293 (515)
.++.|.++|++++|+|++++||+|+.|+.|++||+.++ +....+.+|...|.+++|+|+++.+++++ .|+.|++||
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~d~~v~vwd 83 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS--QDRNAYVYE 83 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE--TTSSEEEC-
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe--CCCeEEEEE
Confidence 34557889999999999999999999999999999988 78888999999999999999998877665 799999999
Q ss_pred CCCCe---eeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCe---EEEEe--cCCCeeEEEECCCCCEEEE
Q psy6127 294 LHDNK---YVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN---VGMIQ--LSGNKPIAAYDPEGLAFAI 365 (515)
Q Consensus 294 ~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~--~~~~~~~~~~s~~~~~l~~ 365 (515)
+.+++ ....+.+|...|.+++|+|++++|++++.|+.|++||+++++. ...+. +...+.+++|+|+++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 99887 6777889999999999999999999999999999999998873 55554 5677999999999999999
Q ss_pred EECCCcEEEEEeecCCCCC-------------ceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce---
Q psy6127 366 GVNSDSIKLYDVRSYDKGP-------------FASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNC--- 429 (515)
Q Consensus 366 g~~dg~i~i~d~~~~~~~~-------------~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~--- 429 (515)
++.|+.|++||++...... ....... .|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 9999999999996432110 1122223 7888999999999999999999999999999999987
Q ss_pred -eEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCe-----------------------------------
Q psy6127 430 -VQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGY----------------------------------- 473 (515)
Q Consensus 430 -~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~----------------------------------- 473 (515)
+..+..| ...+.+++|+|++++|++|+.++.+ +|+...+.
T Consensus 243 ~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 243 ALITVKLS---QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp ECCCEECS---SSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred eeEeecCC---CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 5566654 4459999999999999999866655 66654211
Q ss_pred ----EEE------------EEcCCCCCCeEEEEECCCC-C---EEEEeeCC--EEEEcC
Q psy6127 474 ----KVC------------VLDGDHPSAVQSLQFNPKY-H---MLASACSN--MAFWIP 510 (515)
Q Consensus 474 ----~~~------------~~~~~h~~~V~~l~~sp~~-~---~las~~~d--v~iW~~ 510 (515)
... .+...|.+.|+++++.+.. . .+++++.| +++|++
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 0111389999999977643 3 58888865 999985
No 62
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=304.51 Aligned_cols=307 Identities=20% Similarity=0.280 Sum_probs=250.9
Q ss_pred EEEccceeeeeEeeeeccccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeEec-------------CCCCce
Q psy6127 201 TKCSENLVRSYRVAKVFRENTDKINSLDYSS-DGSLLISCSDDDQIIIYDCEQGTSKNTIN-------------SKKYGV 266 (515)
Q Consensus 201 i~~wd~~~~~~~~~~~~~~h~~~I~~l~~sp-d~~~lasgs~dg~i~iwd~~~~~~~~~~~-------------~~~~~v 266 (515)
+++|+ ....+....+++|.+.|++++|+| ++++||+|+.||.|++||+.+++....+. +|...|
T Consensus 25 ~~v~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 25 RRVLG--LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp HHHHT--EEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred ceeec--cccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence 66777 667777888999999999999999 99999999999999999999887665543 589999
Q ss_pred eEEEEec-CCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCCeE
Q psy6127 267 DLIKFTH-SKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVD---DSFISGSYDKTVRVWDLRQPNNV 342 (515)
Q Consensus 267 ~~~~~~~-~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~ 342 (515)
.+++|+| ++..++++ +.|+.|++||+.+++....+. +...+.++.++|.+ .++++++.|+.|++||+++++.+
T Consensus 103 ~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSS--SFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp EEEEECTTCTTCEEEE--ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred EEEEEccCCCcEEEEE--eCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 9999999 55555544 479999999999999888876 78889999999854 49999999999999999999988
Q ss_pred EEEe-cCCCeeEEEECCCCC-EEEEEECCCcEEEEEeecCCCCCce-----------eeecCCCCCcCeEEEEEcCCCCE
Q psy6127 343 GMIQ-LSGNKPIAAYDPEGL-AFAIGVNSDSIKLYDVRSYDKGPFA-----------SFKCPGERGCEWTGLKFSPDGKL 409 (515)
Q Consensus 343 ~~~~-~~~~~~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~-----------~~~~~~~~~~~i~~l~~sp~~~~ 409 (515)
..+. +...+.+++|+|++. .+++++.||.|++||++........ .......|...|.+++|+|++++
T Consensus 180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence 8875 556799999999998 5899999999999999875421111 11112467789999999999999
Q ss_pred EEEEECCCcEEEEECCCCceeEEeeccccC--CCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeE
Q psy6127 410 ILVSTNGSIIRLFDAFNGNCVQSLSGVLNN--NASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQ 487 (515)
Q Consensus 410 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 487 (515)
+++++.|+.|++||+.+++.......+... ...+........+..+++++.|+.|++||+.+++++..+.+ |.+.|+
T Consensus 260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~v~ 338 (408)
T 4a11_B 260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-HYKTVD 338 (408)
T ss_dssp EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC-CSSCEE
T ss_pred EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc-CCCeEE
Confidence 999999999999999998876554432211 11122222233445666777899999999999999999988 999999
Q ss_pred EEEECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 488 SLQFNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 488 ~l~~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
+++|+|++.+|++++.| +++|+++..
T Consensus 339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 339 CCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 99999999999999855 999998764
No 63
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-39 Score=329.60 Aligned_cols=306 Identities=10% Similarity=0.078 Sum_probs=226.6
Q ss_pred eeCCCCcEEEEccceeeeeEe----eeeccccCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCee-------
Q psy6127 193 HSRSSRTITKCSENLVRSYRV----AKVFRENTDKINSLDYSSD------GSLLISCSDDDQIIIYDCEQGTS------- 255 (515)
Q Consensus 193 ~s~~~~~~i~~wd~~~~~~~~----~~~~~~h~~~I~~l~~spd------~~~lasgs~dg~i~iwd~~~~~~------- 255 (515)
.+++.|+.|++|+ +...++ ..++.+|.+.|.+++|+|+ +.+||+|+.||+|++||+.+++.
T Consensus 177 aS~s~D~tI~iWd--~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 177 DKEKHSSCIQIFK--MNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -----CEEEEEEE--EETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred ccCCCCceEEEEE--ccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 4788999999998 554433 3457788999999999997 57999999999999999987642
Q ss_pred ----eeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCe-eeEEecCCCCCeEEE--EEcCCC-CEEEEEeC
Q psy6127 256 ----KNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNK-YVRYFPGHVRKVSSL--NLSPVD-DSFISGSY 327 (515)
Q Consensus 256 ----~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~l--~~~~~~-~~l~s~s~ 327 (515)
...+.+|...|.+++|++++ .+ ++|+.||+|++||++++. +...+.+|...|.++ +|+|++ .+|++|+.
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~~-~l--asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~ 331 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSPT-TV--VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV 331 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSSS-EE--EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred ecCceEEEEcCCCCEEEEEecCCC-eE--EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence 24678899999999999864 44 444689999999998764 456688999999999 578887 89999999
Q ss_pred CCcEEEEEcCCCCeEEEEecC---CCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEc
Q psy6127 328 DKTVRVWDLRQPNNVGMIQLS---GNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFS 404 (515)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~s 404 (515)
|++|++||++++++...+..+ ..+.+++|+|++..+++++.|++|++||++... .......|...|++++|+
T Consensus 332 D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-----~~~~l~gH~~~V~sva~S 406 (524)
T 2j04_B 332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-----AVHPLVSRETTITAIGVS 406 (524)
T ss_dssp TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-----CCEEEEECSSCEEEEECC
T ss_pred CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-----cceeeecCCCceEEEEeC
Confidence 999999999988776555322 237789999999999999999999999998754 222233588899999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEeeccc--cCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC-CCeEEEEEcCC
Q psy6127 405 PDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVL--NNNASPLEATFTPDSQFVASGSTDGQVHIWNAE-RGYKVCVLDGD 481 (515)
Q Consensus 405 p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~ 481 (515)
|++++|++|+.|++|++||+..+ .+....... .....+..++|+|+|+.+. ...+ +.+|+.. ++.++..+.+
T Consensus 407 p~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~g- 481 (524)
T 2j04_B 407 RLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDA- 481 (524)
T ss_dssp SSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC--------------
T ss_pred CCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecC-
Confidence 99999999999999999998653 222111100 1112367899999998553 2222 3344433 5777888887
Q ss_pred CCCCeEEEEECCCCC---EEEEeeCC--EEEEcCCCC
Q psy6127 482 HPSAVQSLQFNPKYH---MLASACSN--MAFWIPTLS 513 (515)
Q Consensus 482 h~~~V~~l~~sp~~~---~las~~~d--v~iW~~~~~ 513 (515)
|...|++++|+|++. ++|+|+.+ ++||++...
T Consensus 482 h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 482 HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 999999999999854 89998864 999998753
No 64
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-38 Score=317.22 Aligned_cols=295 Identities=12% Similarity=0.188 Sum_probs=241.8
Q ss_pred EccceeeeeEeeeec-cccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC---Ce---eeeEecCCCCceeEEEEecC
Q psy6127 203 CSENLVRSYRVAKVF-RENTDKINSLDYSS-DGSLLISCSDDDQIIIYDCEQ---GT---SKNTINSKKYGVDLIKFTHS 274 (515)
Q Consensus 203 ~wd~~~~~~~~~~~~-~~h~~~I~~l~~sp-d~~~lasgs~dg~i~iwd~~~---~~---~~~~~~~~~~~v~~~~~~~~ 274 (515)
.|+ ..++++..+ .+|.+.|++++|+| ++++||+|+.||+|++||+.+ +. ....+ .|...|.+++|+|+
T Consensus 47 ~w~---~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~ 122 (437)
T 3gre_A 47 MGN---LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPN 122 (437)
T ss_dssp GGG---CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTT
T ss_pred ccc---ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCC
Confidence 375 335777778 89999999999999 999999999999999999876 43 22333 48899999999999
Q ss_pred CCeEEEEEeeCCCeEEEEECC---CCeeeEEecC------------CCCCeEEEE--EcCCCCEEEEEeCCCcEEEEEcC
Q psy6127 275 KTTAIHASTKVDATLRYLSLH---DNKYVRYFPG------------HVRKVSSLN--LSPVDDSFISGSYDKTVRVWDLR 337 (515)
Q Consensus 275 ~~~l~~~s~~~d~~v~vwd~~---~~~~~~~~~~------------h~~~v~~l~--~~~~~~~l~s~s~dg~i~iwd~~ 337 (515)
++.+++++ .|+.|++||++ +++....+.+ +...+.++. ++|+++.|++|+.|+.|++||++
T Consensus 123 ~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 200 (437)
T 3gre_A 123 FDAFAVSS--KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR 200 (437)
T ss_dssp SSEEEEEE--TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT
T ss_pred CCEEEEEe--CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 98877665 79999999995 4444433322 456677777 56789999999999999999999
Q ss_pred CCCeEEEEe---cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeec-CCCCCcCeEEEEEcC----CCCE
Q psy6127 338 QPNNVGMIQ---LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKC-PGERGCEWTGLKFSP----DGKL 409 (515)
Q Consensus 338 ~~~~~~~~~---~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~i~~l~~sp----~~~~ 409 (515)
+++.+..+. +...+.+++|+|+++++++|+.||.|++||++... .... ...+...|.+++|+| ++.+
T Consensus 201 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~s~~~~~ 275 (437)
T 3gre_A 201 TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-----LIRSWSFGDHAPITHVEVCQFYGKNSVI 275 (437)
T ss_dssp TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-----EEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-----EEEEEecCCCCceEEEEeccccCCCccE
Confidence 999998885 45779999999999999999999999999998743 3322 225667899996654 6789
Q ss_pred EEEEECCCcEEEEECCCCceeEEeecccc-----------------------CCCCCEEEEEecCCCEEEEEeCCCcEEE
Q psy6127 410 ILVSTNGSIIRLFDAFNGNCVQSLSGVLN-----------------------NNASPLEATFTPDSQFVASGSTDGQVHI 466 (515)
Q Consensus 410 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------------~~~~i~~~~~sp~g~~l~sgs~dg~I~i 466 (515)
+++++.|+.|++||+++++++..+.++.. +...|.+++|+ ++++|++|+.||.|++
T Consensus 276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~ 354 (437)
T 3gre_A 276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM 354 (437)
T ss_dssp EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence 99999999999999999999888875531 34458899999 7899999999999999
Q ss_pred EECCCCeEEEEEcCC------------------------------------CCCCeEEEEECCC--CCEEEEeeCC--EE
Q psy6127 467 WNAERGYKVCVLDGD------------------------------------HPSAVQSLQFNPK--YHMLASACSN--MA 506 (515)
Q Consensus 467 wd~~~~~~~~~~~~~------------------------------------h~~~V~~l~~sp~--~~~las~~~d--v~ 506 (515)
||+.++++...+.+. |.+.|++++|+++ +.+|++++.+ ++
T Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp EETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEE
T ss_pred EECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEE
Confidence 999998776666542 8899999999998 7899999865 99
Q ss_pred EEc
Q psy6127 507 FWI 509 (515)
Q Consensus 507 iW~ 509 (515)
||+
T Consensus 435 iw~ 437 (437)
T 3gre_A 435 IFQ 437 (437)
T ss_dssp EEC
T ss_pred EeC
Confidence 995
No 65
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.5e-37 Score=301.21 Aligned_cols=281 Identities=14% Similarity=0.143 Sum_probs=243.4
Q ss_pred eeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeeEecCCCCceeEEEEecCCC-eEEEEEeeCCCe
Q psy6127 213 VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGT---SKNTINSKKYGVDLIKFTHSKT-TAIHASTKVDAT 288 (515)
Q Consensus 213 ~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~~~d~~ 288 (515)
......+|.+.|++++|+|++++|++|+.||.|++||+.+++ ....+..|...|.+++|+|++. .+++++ .|+.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~ 80 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT--VQGE 80 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE--TTSC
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc--CCCe
Confidence 345567999999999999999999999999999999998876 3455668999999999999998 777665 7999
Q ss_pred EEEEEC-CCCeeeEEecC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---------CCeEEEEecCCCeeEEEE
Q psy6127 289 LRYLSL-HDNKYVRYFPG--HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQ---------PNNVGMIQLSGNKPIAAY 356 (515)
Q Consensus 289 v~vwd~-~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~ 356 (515)
|++||+ .+++. ..+.+ |...|.+++|+| ++.+++++.|+.|++||+++ ++++..+.+...+.+++|
T Consensus 81 i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (342)
T 1yfq_A 81 ILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp EEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred EEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence 999999 77755 67788 999999999999 99999999999999999988 776666677778999999
Q ss_pred CCCCCEEEEEECCCcEEEEEeec-CCCCCceeeecCCCCCcCeEEEEEcC-CCCEEEEEECCCcEEEEECCCC------c
Q psy6127 357 DPEGLAFAIGVNSDSIKLYDVRS-YDKGPFASFKCPGERGCEWTGLKFSP-DGKLILVSTNGSIIRLFDAFNG------N 428 (515)
Q Consensus 357 s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~l~~sp-~~~~l~~~s~dg~i~iwd~~~~------~ 428 (515)
+|++ +++++.++.|++||++. ..... ......+...+.+++|+| +++++++++.||.+++|+++.. +
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNG---TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCC---EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccc---eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 9988 99999999999999987 43221 112345667899999999 9999999999999999999887 7
Q ss_pred eeEEeecccc------CCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCC-CCCeEEEEECCCCCEEEEe
Q psy6127 429 CVQSLSGVLN------NNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDH-PSAVQSLQFNPKYHMLASA 501 (515)
Q Consensus 429 ~~~~~~~~~~------~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~las~ 501 (515)
....+..+.. +...+.+++|+|++++|++++.||.|++||+.+++++..+.+ | .++|++++ |++.+|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~~--~~~~~l~s~ 310 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK-FNEDSVVKIA--CSDNILCLA 310 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-CSSSEEEEEE--ECSSEEEEE
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc-ccCCCceEec--CCCCeEEEE
Confidence 7777776643 234699999999999999999999999999999999999988 7 99999999 999999999
Q ss_pred eCCE
Q psy6127 502 CSNM 505 (515)
Q Consensus 502 ~~dv 505 (515)
+.|.
T Consensus 311 s~Dg 314 (342)
T 1yfq_A 311 TSDD 314 (342)
T ss_dssp EECT
T ss_pred ecCC
Confidence 8664
No 66
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-37 Score=310.34 Aligned_cols=292 Identities=13% Similarity=0.141 Sum_probs=249.5
Q ss_pred cccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE------eeeeccccCCcEEEEEEcCC----C-
Q psy6127 165 LSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR------VAKVFRENTDKINSLDYSSD----G- 233 (515)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~------~~~~~~~h~~~I~~l~~spd----~- 233 (515)
...+.+|...+.++.+.+. +.++++.|+.+++|+ ....+ +...+.+|...|++++|+|+ +
T Consensus 9 ~~~~~~h~~~i~~~~~~~~-------~l~s~~~dg~i~iw~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~ 79 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACNS-------FTVSCSGDGYLKVWD--NKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAF 79 (397)
T ss_dssp EEESSCSSSCEEEEEECSS-------EEEEEETTSEEEEEE--SBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTE
T ss_pred hhhhhhhhcCeEEEEecCC-------eEEEEcCCCEEEEEE--CCCcccccCCCcceEEecCCCcEEEEEEecccccCCc
Confidence 4467788888999999873 344778899999999 66655 78888999999999999999 9
Q ss_pred --CEEEEEeCCCeEEEEECCCCee-----eeEecCC-----CCceeEEEEe----cCCCe-EEEEEeeCCCeEEEEECCC
Q psy6127 234 --SLLISCSDDDQIIIYDCEQGTS-----KNTINSK-----KYGVDLIKFT----HSKTT-AIHASTKVDATLRYLSLHD 296 (515)
Q Consensus 234 --~~lasgs~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~s~~~d~~v~vwd~~~ 296 (515)
++|++++.||.|++||+.+++. ...+..| ...|.+++|+ |+++. +++++ .|+.|++||+.+
T Consensus 80 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~ 157 (397)
T 1sq9_A 80 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD--VKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE--TTSCEEEEEEES
T ss_pred cccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe--CCCcEEEEeCCc
Confidence 9999999999999999998887 8888888 5899999999 99988 66554 799999999998
Q ss_pred ------CeeeE-----Ee-------cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEec-------CCCe
Q psy6127 297 ------NKYVR-----YF-------PGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQL-------SGNK 351 (515)
Q Consensus 297 ------~~~~~-----~~-------~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~ 351 (515)
++.+. .+ ..|...|.+++|+|++ .+++++.||.|++||+++++.+..+.. ...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 66665 66 4589999999999999 999999999999999999999888865 6779
Q ss_pred eEEEECCCCCEEEEEECC---CcEEEEEeecCCCCCceeeecCCC-------------CCcCeEEEEEcCCCCEEEEEEC
Q psy6127 352 PIAAYDPEGLAFAIGVNS---DSIKLYDVRSYDKGPFASFKCPGE-------------RGCEWTGLKFSPDGKLILVSTN 415 (515)
Q Consensus 352 ~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~-------------~~~~i~~l~~sp~~~~l~~~s~ 415 (515)
.+++|+|++++|++++.| |.|++||+++.+ ....... |...|.+++|+|++++|++++.
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-----EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred ceEEECCCCCEEEEEecCCCCceEEEEECCCCc-----ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence 999999999999999999 999999998754 2222233 7889999999999999999999
Q ss_pred CCcEEEEECCCCceeEEee------cc------------ccCCCCCEEEEEecCC----------CEEEEEeCCCcEEEE
Q psy6127 416 GSIIRLFDAFNGNCVQSLS------GV------------LNNNASPLEATFTPDS----------QFVASGSTDGQVHIW 467 (515)
Q Consensus 416 dg~i~iwd~~~~~~~~~~~------~~------------~~~~~~i~~~~~sp~g----------~~l~sgs~dg~I~iw 467 (515)
|+.|++||+++++.+..+. .+ ..+...|.+++|+|++ ++|++++.||.|++|
T Consensus 312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 312 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 391 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEE
Confidence 9999999999999998888 44 0115569999999998 799999999999999
Q ss_pred ECCCCe
Q psy6127 468 NAERGY 473 (515)
Q Consensus 468 d~~~~~ 473 (515)
++.+|+
T Consensus 392 ~~~~g~ 397 (397)
T 1sq9_A 392 REAGGK 397 (397)
T ss_dssp EEEC--
T ss_pred EcCCCC
Confidence 998764
No 67
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-36 Score=292.00 Aligned_cols=253 Identities=15% Similarity=0.194 Sum_probs=208.8
Q ss_pred eeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeeeEecCCCCceeEEEEecC--CCeEEEEEeeCCCeEE
Q psy6127 215 KVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQ--GTSKNTINSKKYGVDLIKFTHS--KTTAIHASTKVDATLR 290 (515)
Q Consensus 215 ~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~~~d~~v~ 290 (515)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|..+|.+++|+++ ++.++++ +.|++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~--s~D~~v~ 80 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC--SYDGKVM 80 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE--ETTTEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEE--cCCCEEE
Confidence 45789999999999999999999999999999999974 3677899999999999999864 6655544 5899999
Q ss_pred EEECCCCe--eeEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCe--EEEE-ecCCCeeEEEECCC----
Q psy6127 291 YLSLHDNK--YVRYFPGHVRKVSSLNLSPV--DDSFISGSYDKTVRVWDLRQPNN--VGMI-QLSGNKPIAAYDPE---- 359 (515)
Q Consensus 291 vwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~--~~~~-~~~~~~~~~~~s~~---- 359 (515)
+||+++++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||++++.. ...+ .+...+.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99998874 56678889999999999998 88999999999999999987642 2223 45567899999997
Q ss_pred ---------CCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCC---CEEEEEECCCcEEEEECCCC
Q psy6127 360 ---------GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDG---KLILVSTNGSIIRLFDAFNG 427 (515)
Q Consensus 360 ---------~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~---~~l~~~s~dg~i~iwd~~~~ 427 (515)
+++|++|+.|++|++||++..... .........|...|.+++|+|++ ++|++++.|++|++||++++
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 579999999999999999875421 11223345788899999999985 89999999999999999875
Q ss_pred ce--eEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 428 NC--VQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 428 ~~--~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
.. .........+...+.+++|+|+|++|++++.||.|++|+..
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 31 12222112345569999999999999999999999999976
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.7e-37 Score=335.80 Aligned_cols=331 Identities=15% Similarity=0.180 Sum_probs=276.5
Q ss_pred ccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCC
Q psy6127 164 SLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDD 243 (515)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg 243 (515)
...++.+|...+.++++.+... ..++++.++.+++|+ ..+++.+..+.+|.++|++++|+|++++|++|+.||
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~-----~la~~~~~g~v~iwd--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 77 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP-----WVLTTLYSGRVEIWN--YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-----EEEEEETTSEEEEEE--TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred cceeeecCCCceEEEEECCCCC-----EEEEEeCCCEEEEEE--CCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCC
Confidence 3456677776777888877543 223556788999999 778889999999999999999999999999999999
Q ss_pred eEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCC-eeeEEecCCCCCeEEEEEcC-CCCE
Q psy6127 244 QIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDN-KYVRYFPGHVRKVSSLNLSP-VDDS 321 (515)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~ 321 (515)
.|++||+.+++.+..+.+|...|.+++|+|+++.+++++ .|+.|++||+.++ .....+.+|...|.+++|+| +++.
T Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (814)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE--TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc--CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE
Confidence 999999999999999999999999999999999877654 7999999999987 77788899999999999999 8889
Q ss_pred EEEEeCCCcEEEEEcCCCCeEEEEecC--CCeeEEEECC--CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcC
Q psy6127 322 FISGSYDKTVRVWDLRQPNNVGMIQLS--GNKPIAAYDP--EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCE 397 (515)
Q Consensus 322 l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~s~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 397 (515)
+++++.||.|++||+++++....+..+ ..+..++|+| ++.++++++.||.|++||++++. .......|...
T Consensus 156 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~~~~~~~~~ 230 (814)
T 3mkq_A 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVATLEGHMSN 230 (814)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----EEEEEECCSSC
T ss_pred EEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----EEEEEcCCCCC
Confidence 999999999999999988877666432 6689999999 99999999999999999998754 33334567788
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCC--EEEEEeCCCcEEEEECCCCe--
Q psy6127 398 WTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQ--FVASGSTDGQVHIWNAERGY-- 473 (515)
Q Consensus 398 i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~--~l~sgs~dg~I~iwd~~~~~-- 473 (515)
+.+++|+|+++++++++.||.|++||+.+++....+..+.. .+.+++|+|+|. ++++++ ++.+.+|++..+.
T Consensus 231 v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE---RSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPT 306 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS---SEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC---cEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCce
Confidence 99999999999999999999999999999998888876543 499999999987 455554 6668888876432
Q ss_pred --------EEEEE--------------------------------cCCCCCCeEEEEECCCCCEEEEeeC-CEEEEcCCC
Q psy6127 474 --------KVCVL--------------------------------DGDHPSAVQSLQFNPKYHMLASACS-NMAFWIPTL 512 (515)
Q Consensus 474 --------~~~~~--------------------------------~~~h~~~V~~l~~sp~~~~las~~~-dv~iW~~~~ 512 (515)
.+... ...+...+++++|+|+|+++++++. .+.+|++..
T Consensus 307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~ 386 (814)
T 3mkq_A 307 LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALA 386 (814)
T ss_dssp EEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred eEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECcc
Confidence 22210 0114456889999999999998874 389998653
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.2e-36 Score=307.62 Aligned_cols=284 Identities=18% Similarity=0.283 Sum_probs=241.9
Q ss_pred eeeeccccCCcE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEE
Q psy6127 213 VAKVFRENTDKI-NSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRY 291 (515)
Q Consensus 213 ~~~~~~~h~~~I-~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~v 291 (515)
....+++|.+.| .++.+ ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++ .++ +++.|++|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~--s~s~dg~i~v 187 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILV--SGSTDRTVRV 187 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEE--EEETTSCEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEE--EEeCCCCEEE
Confidence 446788999885 66666 56799999999999999999999999999999999999999988 443 4458999999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEEcCCCCeEEE----------------------Eec
Q psy6127 292 LSLHDNKYVRYFPGHVRKVSSLNLS--PVDDSFISGSYDKTVRVWDLRQPNNVGM----------------------IQL 347 (515)
Q Consensus 292 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~----------------------~~~ 347 (515)
||+++++.+..+.+|...|.+++|+ ++++++++|+.|++|++||++++..... ...
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9999999999999999999999998 5778999999999999999998764321 111
Q ss_pred CCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy6127 348 SGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNG 427 (515)
Q Consensus 348 ~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~ 427 (515)
.......+++++++++++|+.||.|++||+++.+ .......|...|.+++|+|+++++++++.||.|++||++++
T Consensus 268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 1223445567899999999999999999998754 44445678889999999999999999999999999999999
Q ss_pred ceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeC-CEE
Q psy6127 428 NCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS-NMA 506 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~-dv~ 506 (515)
+++..+.+|.. .+.+++|+ ++++++++.||.|++||+.+++...... |...+..++|+|++.++++++. .++
T Consensus 343 ~~~~~~~~h~~---~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~dg~i~ 415 (464)
T 3v7d_B 343 ELMYTLQGHTA---LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGSENQFN 415 (464)
T ss_dssp EEEEEECCCSS---CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEETTEEE
T ss_pred cEEEEEeCCCC---cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEecCCeEE
Confidence 99998887544 48899987 6899999999999999999988777765 6677888999999999999874 499
Q ss_pred EEcCCCC
Q psy6127 507 FWIPTLS 513 (515)
Q Consensus 507 iW~~~~~ 513 (515)
+|++..+
T Consensus 416 iwd~~~g 422 (464)
T 3v7d_B 416 IYNLRSG 422 (464)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 9998764
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.9e-37 Score=300.71 Aligned_cols=296 Identities=10% Similarity=0.094 Sum_probs=240.6
Q ss_pred ccCCceeEEEEEEeeccccceeeeeeeCC---CCcEEEEccceeeeeEeeee-ccccCCcEEEEEEcCC---CCEEEEEe
Q psy6127 168 LESPHFVSLFVTFVSRVLTMAASLAHSRS---SRTITKCSENLVRSYRVAKV-FRENTDKINSLDYSSD---GSLLISCS 240 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~~---~~~~i~~wd~~~~~~~~~~~-~~~h~~~I~~l~~spd---~~~lasgs 240 (515)
+++|...+.++.|.+.... ++.+++ .++.+++|+ +...+.... ..+|...|.+++|+|+ +++|++|+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~----l~~~~s~~~~d~~v~iw~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAK----FVTMGNFARGTGVIQLYE--IQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp EEECSSCEEEEEECTTSSE----EEEEEC--CCCEEEEEEE--ECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred ccCCCCceEEEEEcCCCce----EEEecCccCCCcEEEEEe--CCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec
Confidence 4567667888888875432 223444 389999999 666655433 3389999999999998 69999999
Q ss_pred CCCeEEEEECCCCe-eeeEecCCCCceeEEEE------ecCCCeEEEEEeeCCCeEEEEECCCCe-eeEEecCCCC----
Q psy6127 241 DDDQIIIYDCEQGT-SKNTINSKKYGVDLIKF------THSKTTAIHASTKVDATLRYLSLHDNK-YVRYFPGHVR---- 308 (515)
Q Consensus 241 ~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~s~~~d~~v~vwd~~~~~-~~~~~~~h~~---- 308 (515)
.||.|++||+.+++ ....+.+|...|.+++| +|+++.+++++ .|+.|++||+.+++ .+..+..|.+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS--RDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE--TTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEe--CCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 99999999999988 88999999999999965 57787776554 79999999999887 6777766654
Q ss_pred CeEEEE----EcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECC---CCCEEEEEECCCcEEEEEeecCC
Q psy6127 309 KVSSLN----LSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDP---EGLAFAIGVNSDSIKLYDVRSYD 381 (515)
Q Consensus 309 ~v~~l~----~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~g~~dg~i~i~d~~~~~ 381 (515)
.+.+++ |+|+++++++++.||.|++||+++++......+...+.+++|+| ++..+++++.||.|++||++...
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 899998 78899999999999999999999999887778888899999999 99999999999999999999854
Q ss_pred CCCceeeecCCCCCcCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCc-------------------eeEEeeccccCCC
Q psy6127 382 KGPFASFKCPGERGCEWTGLKFSPDGK-LILVSTNGSIIRLFDAFNGN-------------------CVQSLSGVLNNNA 441 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~i~~l~~sp~~~-~l~~~s~dg~i~iwd~~~~~-------------------~~~~~~~~~~~~~ 441 (515)
............|...|.+++|+|+++ ++++++.||.|++||++++. .+..+.. +..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~ 322 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL---STQ 322 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC---CSS
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc---CCC
Confidence 332222222346788999999999998 89999999999999998653 3344444 455
Q ss_pred CCEEEEEecCCCEEE-EEeCCCcEEEEECCCCeE
Q psy6127 442 SPLEATFTPDSQFVA-SGSTDGQVHIWNAERGYK 474 (515)
Q Consensus 442 ~i~~~~~sp~g~~l~-sgs~dg~I~iwd~~~~~~ 474 (515)
.|.+++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 323 ~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 323 PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 699999999999998 899999999999987654
No 71
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.8e-36 Score=323.82 Aligned_cols=292 Identities=20% Similarity=0.241 Sum_probs=241.4
Q ss_pred ccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEcccee---eeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCC
Q psy6127 166 SSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLV---RSYRVAKVFRENTDKINSLDYSSDGSLLISCSDD 242 (515)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~---~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~d 242 (515)
..+++|...|.++++.+.... +.++++.|+.+++|+-.. ....+.+.+.+|...|.+++|+|++++|++|+.|
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~----~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNAD----IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCS----EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred hhcccCCceeEEEEecCCCCC----EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 357789888888887754322 344888999999998221 1234567889999999999999999999999999
Q ss_pred CeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEe---cCCCCCeEEEEEcCCC
Q psy6127 243 DQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYF---PGHVRKVSSLNLSPVD 319 (515)
Q Consensus 243 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~ 319 (515)
|+|++||+.+++....+.+|...|.+++|+|++..+++++ .|++|++||.......... .+|...|.+++|+|++
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS--RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEe--CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 9999999999999999999999999999999999887665 7999999998765443332 4789999999999987
Q ss_pred --CEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCc
Q psy6127 320 --DSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGC 396 (515)
Q Consensus 320 --~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 396 (515)
..+++++.|++|++||+++++....+. +...+.+++|+|+++++++|+.||.|++||+++++ ..... .+..
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~-----~~~~~-~~~~ 603 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-----KLYSL-EANS 603 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE-----EEECC-BCSS
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----eEEEe-cCCC
Confidence 589999999999999999999888874 55679999999999999999999999999998754 22222 2345
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecccc----------------CCCCCEEEEEecCCCEEEEEeC
Q psy6127 397 EWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLN----------------NNASPLEATFTPDSQFVASGST 460 (515)
Q Consensus 397 ~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~~i~~~~~sp~g~~l~sgs~ 460 (515)
.+.+++|+|++.++++++ ++.|++||+++++.+..+..+.. +...+++++|+|+|++|++|+.
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence 799999999998887765 55699999999988877653221 1123678999999999999999
Q ss_pred CCcEEEEECC
Q psy6127 461 DGQVHIWNAE 470 (515)
Q Consensus 461 dg~I~iwd~~ 470 (515)
||.|++|++.
T Consensus 683 Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 DGVIRVWGIG 692 (694)
T ss_dssp TSEEEEEEC-
T ss_pred CCeEEEEecc
Confidence 9999999985
No 72
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-38 Score=314.16 Aligned_cols=281 Identities=16% Similarity=0.247 Sum_probs=239.2
Q ss_pred CCcEEEEEEcCCCC-EEEEE----------eCCCeEEEEECCCCe---eeeEecCCCCceeEEEEecCCCeEEEEEeeCC
Q psy6127 221 TDKINSLDYSSDGS-LLISC----------SDDDQIIIYDCEQGT---SKNTINSKKYGVDLIKFTHSKTTAIHASTKVD 286 (515)
Q Consensus 221 ~~~I~~l~~spd~~-~lasg----------s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d 286 (515)
...|.+++|+|+++ +|++| +.|+.|++||+.+++ ....+ .|...|.+++|+|++..+++++ .|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--~d 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGAL--DN 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEE--SS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEc--cC
Confidence 34688999999987 99999 899999999999875 33333 5788999999999999887665 79
Q ss_pred CeEEEEECCC----CeeeEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCC------eEEEE----ecCCCe
Q psy6127 287 ATLRYLSLHD----NKYVRYFPGHVRKVSSLNLSPV-DDSFISGSYDKTVRVWDLRQPN------NVGMI----QLSGNK 351 (515)
Q Consensus 287 ~~v~vwd~~~----~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~------~~~~~----~~~~~~ 351 (515)
+.|++||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+++++ ..... .+...+
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 9999999987 4578889999999999999998 8899999999999999999886 33222 455678
Q ss_pred eEEEECCC-CCEEEEEECCCcEEEEEeecCCCCCceeeecCCC------CCcCeEEEEEcCCC-CEEEEEECCC---cEE
Q psy6127 352 PIAAYDPE-GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGE------RGCEWTGLKFSPDG-KLILVSTNGS---IIR 420 (515)
Q Consensus 352 ~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~~i~~l~~sp~~-~~l~~~s~dg---~i~ 420 (515)
.+++|+|+ +.++++++.||.|++||+++.+ ....... +...+.+++|+|++ .++++++.|+ .|+
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~ 243 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKK-----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL 243 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTE-----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCC
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-----cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEE
Confidence 99999999 7899999999999999998754 2222222 27789999999997 6899999998 999
Q ss_pred EEECCCC-ceeEEee-ccccCCCCCEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCC-C
Q psy6127 421 LFDAFNG-NCVQSLS-GVLNNNASPLEATFTP-DSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKY-H 496 (515)
Q Consensus 421 iwd~~~~-~~~~~~~-~~~~~~~~i~~~~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~-~ 496 (515)
+||++++ .+...+. .| ...+.+++|+| ++++|++++.||.|++||+.+++++..+.. |.+.|++++|+|++ .
T Consensus 244 ~~d~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 244 IWDLRNANTPLQTLNQGH---QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA-RGNWCFKTKFAPEAPD 319 (416)
T ss_dssp EEETTSTTSCSBCCCSCC---SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC-SSSCCCCEEECTTCTT
T ss_pred EEeCCCCCCCcEEeecCc---cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC-CCCceEEEEECCCCCC
Confidence 9999987 4555555 43 44599999999 999999999999999999999999999988 99999999999998 8
Q ss_pred EEEEeeCC--EEEEcCCCC
Q psy6127 497 MLASACSN--MAFWIPTLS 513 (515)
Q Consensus 497 ~las~~~d--v~iW~~~~~ 513 (515)
++++++.| +++|++...
T Consensus 320 ~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 320 LFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp EEEECCSSSEEEEEESCCC
T ss_pred EEEEEecCCcEEEEEccCC
Confidence 99999865 999998754
No 73
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=298.00 Aligned_cols=288 Identities=16% Similarity=0.206 Sum_probs=242.2
Q ss_pred eeeeEeeeeccccCCcEEEEEEcCC---CCEEEEEeCCCeEEEEECCC-Ceee-eEecCCCCceeEEEEecCCCeEEEEE
Q psy6127 208 VRSYRVAKVFRENTDKINSLDYSSD---GSLLISCSDDDQIIIYDCEQ-GTSK-NTINSKKYGVDLIKFTHSKTTAIHAS 282 (515)
Q Consensus 208 ~~~~~~~~~~~~h~~~I~~l~~spd---~~~lasgs~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s 282 (515)
..+.+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +... ..+.+|...|.+++|+|+++.+++++
T Consensus 26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 5566777889999999999999999 69999999999999999997 5544 77889999999999999999887665
Q ss_pred eeCCCeEEEEECCCCeeeEEecCCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECCCC
Q psy6127 283 TKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNL--SPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEG 360 (515)
Q Consensus 283 ~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~ 360 (515)
.|+.|++||+++++.+. +.+|...|.+++| +|++++|++++.||.|++||+++++.+..+..+..+.++.+. +
T Consensus 106 --~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~ 180 (368)
T 3mmy_A 106 --CDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--Y 180 (368)
T ss_dssp --TTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--T
T ss_pred --CCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--C
Confidence 79999999999998776 4569999999999 899999999999999999999999999888877766666555 4
Q ss_pred CEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCE----EEEEECCCcEEEEECCCC---ceeEEe
Q psy6127 361 LAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKL----ILVSTNGSIIRLFDAFNG---NCVQSL 433 (515)
Q Consensus 361 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~ 433 (515)
..+++++.++.+.+|+++..... ..............+++.++... +++++.|+.|++||++.. .....+
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSE---FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEE---EEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred CeeEEEeCCCcEEEEEeccccch---hhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 58889999999999999874321 11222333445556666655544 999999999999999987 456666
Q ss_pred eccccC---------CCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC
Q psy6127 434 SGVLNN---------NASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN 504 (515)
Q Consensus 434 ~~~~~~---------~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d 504 (515)
..+... ...+.+++|+|++++|++|+.||.|++||+.+++++..+.. |..+|++++|+|++++|++++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-LDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-CSSCEEEEEECTTSSCEEEEECC
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC-CCCCceEEEECCCCCeEEEEecc
Confidence 665431 11499999999999999999999999999999999999987 99999999999999999999865
No 74
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.9e-36 Score=305.47 Aligned_cols=306 Identities=15% Similarity=0.247 Sum_probs=262.8
Q ss_pred hheeecccccccccccCCCCcCCCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE
Q psy6127 133 KIVAKSENMCNLTKLDLPYNKLGSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR 212 (515)
Q Consensus 133 ~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~ 212 (515)
+.|++|+.++.| ++||..+++.+.++.+|...+.++.+.+. +.++++.|+.+++|+ ...++
T Consensus 130 ~~l~sg~~dg~i----------~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-------~l~s~~~dg~i~vwd--~~~~~ 190 (445)
T 2ovr_B 130 NRIVSGSDDNTL----------KVWSAVTGKCLRTLVGHTGGVWSSQMRDN-------IIISGSTDRTLKVWN--AETGE 190 (445)
T ss_dssp TEEEEEETTSCE----------EEEETTTCCEEEECCCCSSCEEEEEEETT-------EEEEEETTSCEEEEE--TTTTE
T ss_pred CEEEEEECCCcE----------EEEECCCCcEEEEEcCCCCCEEEEEecCC-------EEEEEeCCCeEEEEE--CCcCc
Confidence 568888888888 99999999999999999888888888754 334788889999999 77889
Q ss_pred eeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEE
Q psy6127 213 VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYL 292 (515)
Q Consensus 213 ~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vw 292 (515)
+...+.+|...|.+++|+ ++.+++|+.||+|++||+.+++....+.+|...+.+++| ++..+++++ .|+.|++|
T Consensus 191 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~--~dg~i~iw 264 (445)
T 2ovr_B 191 CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA--YDFMVKVW 264 (445)
T ss_dssp EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE--TTSCEEEE
T ss_pred EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc--CCCEEEEE
Confidence 999999999999999996 568999999999999999999999999999999999999 566666554 79999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC-CCeeEEEECCCCCEEEEEECCCc
Q psy6127 293 SLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS-GNKPIAAYDPEGLAFAIGVNSDS 371 (515)
Q Consensus 293 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~~dg~ 371 (515)
|+++++.+..+.+|...|.+++| ++..+++++.|+.|++||+++++.+..+..+ ..+.++. ++++.+++|+.||.
T Consensus 265 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~ 340 (445)
T 2ovr_B 265 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME--LKDNILVSGNADST 340 (445)
T ss_dssp EGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE--EETTEEEEEETTSC
T ss_pred ECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE--EeCCEEEEEeCCCe
Confidence 99999999999999999999999 6899999999999999999999998888544 3344444 46789999999999
Q ss_pred EEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecc--ccCCCCCEEEEEe
Q psy6127 372 IKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGV--LNNNASPLEATFT 449 (515)
Q Consensus 372 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~i~~~~~s 449 (515)
|++||+++++ ....+.....|...|.+++|+ ++++++++.||.|++||+.+++.+..+... ..+...+.+++|+
T Consensus 341 i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 416 (445)
T 2ovr_B 341 VKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 416 (445)
T ss_dssp EEEEETTTCC--EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred EEEEECCCCc--EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEec
Confidence 9999998754 223333334578899999995 579999999999999999999998887321 2345569999999
Q ss_pred cCCCEEEEEeCCCc----EEEEECCC
Q psy6127 450 PDSQFVASGSTDGQ----VHIWNAER 471 (515)
Q Consensus 450 p~g~~l~sgs~dg~----I~iwd~~~ 471 (515)
|++.++++|+.||+ |.+||+..
T Consensus 417 ~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 417 NTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999998 99999875
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6e-36 Score=316.10 Aligned_cols=298 Identities=13% Similarity=0.139 Sum_probs=257.3
Q ss_pred CcEEEEccceeeee----EeeeeccccCCc-EEEEEEcC--CCCEEEEEeCCCeEEEEECCCC--------eeeeEecCC
Q psy6127 198 RTITKCSENLVRSY----RVAKVFRENTDK-INSLDYSS--DGSLLISCSDDDQIIIYDCEQG--------TSKNTINSK 262 (515)
Q Consensus 198 ~~~i~~wd~~~~~~----~~~~~~~~h~~~-I~~l~~sp--d~~~lasgs~dg~i~iwd~~~~--------~~~~~~~~~ 262 (515)
++.+.+|+ +.+. +....+.+|.+. |++++|+| ++++||+|+.||.|++||+.++ +....+..|
T Consensus 38 ~~~v~v~~--~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 115 (615)
T 1pgu_A 38 GKSAFVRC--LDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL 115 (615)
T ss_dssp TTEEEEEE--CCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC
T ss_pred CCeEEEEE--CCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc
Confidence 56799999 6677 788999999999 99999999 9999999999999999999754 677788899
Q ss_pred CCceeEEEEecCCCeEEEEEeeCC--CeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q psy6127 263 KYGVDLIKFTHSKTTAIHASTKVD--ATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDD-SFISGSYDKTVRVWDLRQP 339 (515)
Q Consensus 263 ~~~v~~~~~~~~~~~l~~~s~~~d--~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~ 339 (515)
...|.+++|+|++..+++++.+.+ +.|++|| .++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||++++
T Consensus 116 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~ 193 (615)
T 1pgu_A 116 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 193 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc
Confidence 999999999999999888763222 5777777 6778889999999999999999998 8999999999999999999
Q ss_pred CeEEEEe-cCC---CeeEEEECCC-CCEEEEEECCCcEEEEEeecCCCCCceeeecC-C---CCCcCeEEEEEcCCCCEE
Q psy6127 340 NNVGMIQ-LSG---NKPIAAYDPE-GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCP-G---ERGCEWTGLKFSPDGKLI 410 (515)
Q Consensus 340 ~~~~~~~-~~~---~~~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-~---~~~~~i~~l~~sp~~~~l 410 (515)
+....+. +.. .+.+++|+|+ ++++++++.||.|++||+++++ ..... . .|...|.+++|+ +++++
T Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~v~~~~~~-~~~~l 267 (615)
T 1pgu_A 194 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-----FLKYIEDDQEPVQGGIFALSWL-DSQKF 267 (615)
T ss_dssp EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-----EEEECCBTTBCCCSCEEEEEES-SSSEE
T ss_pred ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-----EeEEecccccccCCceEEEEEc-CCCEE
Confidence 9888885 444 6999999999 9999999999999999998754 33333 3 788899999999 99999
Q ss_pred EEEECCCcEEEEECCCCceeEEeeccc-cCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEE
Q psy6127 411 LVSTNGSIIRLFDAFNGNCVQSLSGVL-NNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSL 489 (515)
Q Consensus 411 ~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 489 (515)
++++.|+.|++||+++++.+..+..+. .....+.++.|+ +++++++++.||.|++||+.+++++..+.+ |.+.|+++
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~v~~~ 345 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISG-HNKGITAL 345 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECC-CSSCEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeC-CCCCEEEE
Confidence 999999999999999999988887652 222346778885 899999999999999999999999999988 99999999
Q ss_pred EECCCCCEEEEee--CCEEEEcCC
Q psy6127 490 QFNPKYHMLASAC--SNMAFWIPT 511 (515)
Q Consensus 490 ~~sp~~~~las~~--~dv~iW~~~ 511 (515)
+| |+ +++++ +.+++|++.
T Consensus 346 ~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 346 TV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp ET-TT---TEEEETTSCEEETTTT
T ss_pred Ee-cC---cEEECCCCeEEEEEch
Confidence 99 87 55555 348888753
No 76
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.5e-36 Score=300.52 Aligned_cols=303 Identities=16% Similarity=0.163 Sum_probs=243.0
Q ss_pred CCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeec--cccCCcEEEEEEcC-
Q psy6127 155 GSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVF--RENTDKINSLDYSS- 231 (515)
Q Consensus 155 ~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~--~~h~~~I~~l~~sp- 231 (515)
.+|+....+...++.+|...+.++.+.+.... +.++++.|+.+++|+ ....+....+ .+|.+.|.+++|+|
T Consensus 56 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----~l~s~~~dg~i~iwd--~~~~~~~~~~~~~~h~~~v~~~~~~~~ 129 (383)
T 3ei3_B 56 FIRSLKSYKLHRTASPFDRRVTSLEWHPTHPT----TVAVGSKGGDIILWD--YDVQNKTSFIQGMGPGDAITGMKFNQF 129 (383)
T ss_dssp HHHHHTTCEEEEEECCCSSCEEEEEECSSCTT----EEEEEEBTSCEEEEE--TTSTTCEEEECCCSTTCBEEEEEEETT
T ss_pred ccccccccceEEeccCCCCCEEEEEECCCCCC----EEEEEcCCCeEEEEe--CCCcccceeeecCCcCCceeEEEeCCC
Confidence 45666777777888899887888888876421 334677788999999 5545444444 47999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEecCC---CCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCC
Q psy6127 232 DGSLLISCSDDDQIIIYDCEQGTSKNTINSK---KYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVR 308 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~ 308 (515)
++++|++++.|+.|++||+.+ .....+..+ ...|.+++|+|++..+++++ .|+.|++||+ +++.+..+.+|..
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~-~~~~~~~~~~h~~ 205 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD--STGRLLLLGL-DGHEIFKEKLHKA 205 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE--TTSEEEEEET-TSCEEEEEECSSS
T ss_pred CCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEEC--CCCCEEEEEC-CCCEEEEeccCCC
Confidence 789999999999999999985 555555444 47899999999999777664 7999999999 5778888999999
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC----CCeEEEEecCCCeeEEEECC-CCCEEEEEECCCcEEEEEeecCCC
Q psy6127 309 KVSSLNLSPVDD-SFISGSYDKTVRVWDLRQ----PNNVGMIQLSGNKPIAAYDP-EGLAFAIGVNSDSIKLYDVRSYDK 382 (515)
Q Consensus 309 ~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~ 382 (515)
.|.+++|+|+++ ++++++.|+.|++||+++ +..+..+.+...+.+++|+| ++++|++++.|+.|++||+++...
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 999999999999 999999999999999998 67777778888899999999 999999999999999999988654
Q ss_pred CCceeeec--CCCCC----------cCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEec
Q psy6127 383 GPFASFKC--PGERG----------CEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTP 450 (515)
Q Consensus 383 ~~~~~~~~--~~~~~----------~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp 450 (515)
........ ...+. ..+..++|+|++++ +++.|+.|++||+.+++.+..+.++. +...+..++|+|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~ 362 (383)
T 3ei3_B 286 PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSP 362 (383)
T ss_dssp CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECT
T ss_pred ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEec
Confidence 32211110 11112 23445666666666 66789999999999999999887643 233477789999
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q psy6127 451 DSQFVASGSTDGQVHIWNAER 471 (515)
Q Consensus 451 ~g~~l~sgs~dg~I~iwd~~~ 471 (515)
++++|++|+ ||.|++||+++
T Consensus 363 ~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 363 TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TSSEEEEEE-TTEEEEEECC-
T ss_pred CccEEEEec-CCcEEEEecCC
Confidence 999999997 99999999864
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-35 Score=298.22 Aligned_cols=278 Identities=19% Similarity=0.305 Sum_probs=236.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEec--CCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeee
Q psy6127 223 KINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTIN--SKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYV 300 (515)
Q Consensus 223 ~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~ 300 (515)
.++.|+||++ ++||+|. |++|+|||..+++....+. +|...|++++|+|+++.+++++ .|+.|++||+++++.+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs--~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT--SSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE--CCCeEEEEEcCCCcEE
Confidence 4678999986 4788775 8999999999998877664 6677899999999999887665 7999999999999999
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCe-EEEE-ecCCCeeEEEECCCCCEEEEEECCCcEEEEEee
Q psy6127 301 RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN-VGMI-QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVR 378 (515)
Q Consensus 301 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~ 378 (515)
..+.+|...+.+++++ +..+++|+.|+.+++||...... +..+ .+...+..+.++|+++++++++.|+.+++|+..
T Consensus 183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 9999999999998886 68999999999999999987554 3444 455668899999999999999999999999998
Q ss_pred cCCCCCceeeecCCCCCcCeEEEEEcCCCC-EEEEE--ECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEE
Q psy6127 379 SYDKGPFASFKCPGERGCEWTGLKFSPDGK-LILVS--TNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFV 455 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~-~l~~~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 455 (515)
..+.... .......+...|.+++|+|++. .++++ +.|+.|++||+.++++...+..+. .+.++.|+|+++.+
T Consensus 261 ~~~~~~~-~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~----~v~~~~~~~~~~~l 335 (420)
T 4gga_A 261 PGEGGWV-PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS----QVCSILWSPHYKEL 335 (420)
T ss_dssp CCSSCSC-CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS----CEEEEEEETTTTEE
T ss_pred cccccce-eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc----ceeeeeecCCCCeE
Confidence 7653221 2233456778899999999665 55544 479999999999999988887543 38999999999988
Q ss_pred EEEe--CCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCC
Q psy6127 456 ASGS--TDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTL 512 (515)
Q Consensus 456 ~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~ 512 (515)
++++ .||.|+|||+.+++++..+.+ |.+.|++++|+|||.+|++|+.| ++||++..
T Consensus 336 v~~sg~~d~~I~iwd~~~~~~v~~l~g-H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 336 ISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 8765 789999999999999999998 99999999999999999999876 99999853
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6e-36 Score=299.88 Aligned_cols=281 Identities=18% Similarity=0.284 Sum_probs=236.8
Q ss_pred ccccCCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecC-CCCceeEEEEecCCCeEEEEEeeCCCeEEEEE
Q psy6127 217 FRENTDKI--NSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINS-KKYGVDLIKFTHSKTTAIHASTKVDATLRYLS 293 (515)
Q Consensus 217 ~~~h~~~I--~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd 293 (515)
..+|...+ .+++|++ ..+++++.|+.|++||+.+++....+.. |...|.+++|+|+++.+++++ .||.|++||
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i~iwd 162 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL--GNGLVDIYD 162 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE--TTSCEEEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC--CCCeEEEEE
Confidence 45776654 4456654 5688899999999999999998887766 788999999999999877665 799999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CCeEEEE-ecCCCeeEEEECCCCCEEEEEECCCc
Q psy6127 294 LHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQ-PNNVGMI-QLSGNKPIAAYDPEGLAFAIGVNSDS 371 (515)
Q Consensus 294 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~ 371 (515)
+.+++.+..+.+|...|.+++|+ ++.+++|+.||.|++||++. +.....+ .+...+.+++|+|+++++++|+.||.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 99999999999999999999995 67999999999999999994 4555555 45667999999999999999999999
Q ss_pred EEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCC-EEEEEE--CCCcEEEEECCCCceeEEeeccccCCCCCEEEEE
Q psy6127 372 IKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGK-LILVST--NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATF 448 (515)
Q Consensus 372 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~-~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 448 (515)
|++||+++.. .......|...|.+++|+|++. .+++++ .|+.|++||+.+++++..+.. ...+.+++|
T Consensus 241 v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~----~~~v~~~~~ 311 (401)
T 4aez_A 241 VQIWDARSSI-----PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA----GSQVTSLIW 311 (401)
T ss_dssp EEEEETTCSS-----EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC----SSCEEEEEE
T ss_pred EEEccCCCCC-----ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC----CCcEEEEEE
Confidence 9999998754 3334456788899999999775 555554 699999999999999888863 334999999
Q ss_pred ecCCCEEEEE--eCCCcEEEEECCCCeEEEE--EcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 449 TPDSQFVASG--STDGQVHIWNAERGYKVCV--LDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 449 sp~g~~l~sg--s~dg~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
+|++++++++ +.||.|++||+.+++.... +.+ |.+.|++++|+|++.+|++++.| +++|++...
T Consensus 312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA-HDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp CSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC-CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred CCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 9999999994 4899999999999765554 556 99999999999999999999865 999998754
No 79
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=301.29 Aligned_cols=341 Identities=14% Similarity=0.157 Sum_probs=244.3
Q ss_pred CCcchhhccccccccCCceeEEEEEEee-ccccceeeeeeeCCCCcEEEEccceeeeeEeeeec-------------ccc
Q psy6127 155 GSWDFELLHSLSSLESPHFVSLFVTFVS-RVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVF-------------REN 220 (515)
Q Consensus 155 ~~wd~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~-------------~~h 220 (515)
++|+...++....+.+|...+.++.+.+ ... +.++++.++.+++|+ +...+....+ .+|
T Consensus 26 ~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-----~l~~~~~dg~i~iw~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 26 RVLGLELNKDRDVERIHGGGINTLDIEPVEGR-----YMLSGGSDGVIVLYD--LENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHTEEECTTEEECCCCSSCEEEEEECTTTCC-----EEEEEETTSCEEEEE--CCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred eeeccccCcceeeeeccCCcEEEEEEecCCCC-----EEEEEcCCCeEEEEE--CCCCcccceEeccccccccccccccC
Confidence 8899999999999999988888888877 332 334677788999998 5554444333 369
Q ss_pred CCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCC---eEEEEEeeCCCeEEEEECCC
Q psy6127 221 TDKINSLDYSS-DGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKT---TAIHASTKVDATLRYLSLHD 296 (515)
Q Consensus 221 ~~~I~~l~~sp-d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~s~~~d~~v~vwd~~~ 296 (515)
...|.+++|+| ++++|++++.||.|++||+.+++....+. +...+.++.|+|.+. .++++ +.++.|++||+++
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~d~~~ 175 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVG--TRGPKVQLCDLKS 175 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEE--ESSSSEEEEESSS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEE--cCCCeEEEEeCCC
Confidence 99999999999 78899999999999999999999888776 667899999998654 44444 4799999999999
Q ss_pred CeeeEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCC-eEEEE----------------ecCCCeeEEEECC
Q psy6127 297 NKYVRYFPGHVRKVSSLNLSPVDD-SFISGSYDKTVRVWDLRQPN-NVGMI----------------QLSGNKPIAAYDP 358 (515)
Q Consensus 297 ~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~-~~~~~----------------~~~~~~~~~~~s~ 358 (515)
++.+..+.+|...|.+++|+|+++ .+++++.||.|++||++++. ....+ .+...+.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 999999999999999999999998 69999999999999998775 33332 3445689999999
Q ss_pred CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecccc
Q psy6127 359 EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLN 438 (515)
Q Consensus 359 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 438 (515)
+++++++++.||.|++||+++++................+........+..+++++.++.|++||+.+++.+..+.+|..
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence 99999999999999999998865322111111111112222222233455677778899999999999999998887554
Q ss_pred CCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCC-EEEEee--CCEEEEcCCC
Q psy6127 439 NNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYH-MLASAC--SNMAFWIPTL 512 (515)
Q Consensus 439 ~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~las~~--~dv~iW~~~~ 512 (515)
.|.+++|+|++++|++++.||.|++||+.+++++..... +. ....+.|... ...+++ +.+++|+.+.
T Consensus 336 ---~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 336 ---TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE-TT---TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ---CEEEEEEETTTTEEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred ---eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc-eE---eccccccccceeecccCccCceeecCCcc
Confidence 499999999999999999999999999999988776553 22 1233444222 222332 3499998764
No 80
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=293.24 Aligned_cols=290 Identities=16% Similarity=0.173 Sum_probs=249.1
Q ss_pred cccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCe
Q psy6127 165 LSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQ 244 (515)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~ 244 (515)
..++.+|...+.++.+.+... +.++++.++.+++|+ +..++....+.+|.+.|.+++|+|++++|++++.||.
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~-----~l~~~~~dg~i~vwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGD-----LLFSCSKDSSASVWY--SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSC-----EEEEEESSSCEEEEE--TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred cEEEEEeeceEEEEEEcCCCC-----EEEEEeCCCEEEEEe--CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 345778877788888876543 334667788899999 7788899999999999999999999999999999999
Q ss_pred EEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCC-----CeEEEEECCCCe-----------eeEEecCCCC
Q psy6127 245 IIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVD-----ATLRYLSLHDNK-----------YVRYFPGHVR 308 (515)
Q Consensus 245 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d-----~~v~vwd~~~~~-----------~~~~~~~h~~ 308 (515)
|++||+.+++.+..+. +...+.+++|+|++..+++++ .+ +.|++||+.++. ....+..|..
T Consensus 98 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 98 IKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAIL--DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEE--CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred EEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEec--CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 9999999999988888 788999999999999888776 46 999999987653 3344556666
Q ss_pred --CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CCeEEEEe-cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCC
Q psy6127 309 --KVSSLNLSPVDDSFISGSYDKTVRVWDLRQ-PNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGP 384 (515)
Q Consensus 309 --~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~ 384 (515)
.+.+++|+|+++.|++++.||.|++||+++ ++....+. +...+.+++|+|++++|++++.|+.|++||+++..
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--- 251 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--- 251 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---
T ss_pred ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc---
Confidence 999999999999999999999999999998 66666664 55679999999999999999999999999998754
Q ss_pred ceeeecCCCCCcCeEEEEEcCCCCEEEEEECCC--------------cEEEEECCCCceeEEeeccccCCCCCEEEEEec
Q psy6127 385 FASFKCPGERGCEWTGLKFSPDGKLILVSTNGS--------------IIRLFDAFNGNCVQSLSGVLNNNASPLEATFTP 450 (515)
Q Consensus 385 ~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp 450 (515)
..... .+...+..++|+|+++++++++.++ .+++||..+++.+..+.+|.. .|.+++|+|
T Consensus 252 --~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~v~~~~~s~ 325 (369)
T 3zwl_B 252 --VLKKY-ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG---PLNTVAISP 325 (369)
T ss_dssp --EEEEE-ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS---CEEEEEECT
T ss_pred --eeeee-cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC---cEEEEEECC
Confidence 22221 1566889999999999999999888 899999999999988887544 499999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCe
Q psy6127 451 DSQFVASGSTDGQVHIWNAERGY 473 (515)
Q Consensus 451 ~g~~l~sgs~dg~I~iwd~~~~~ 473 (515)
++++|++++.||.|++|+++++.
T Consensus 326 ~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 326 QGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp TSSEEEEEETTSEEEEEEECHHH
T ss_pred CCCEEEEEcCCCeEEEEECcccc
Confidence 99999999999999999998654
No 81
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8e-37 Score=301.13 Aligned_cols=295 Identities=14% Similarity=0.182 Sum_probs=236.4
Q ss_pred cCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccc-----cCCcEEEEEEcCC----CCEEEEE
Q psy6127 169 ESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRE-----NTDKINSLDYSSD----GSLLISC 239 (515)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~-----h~~~I~~l~~spd----~~~lasg 239 (515)
++|...+.++.|.+........+. .+..++.+++|+ ....+.+..+.. |...|++++|+|+ +++|++|
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~-~~~~~~~v~vw~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVF-ATVGSNRVTLYE--CHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEE-EEEETTEEEEEE--ECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred cCCCCceEEEEEecccCCCCceEE-EECCCCEEEEEE--cCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 467777888888864111111122 233334799998 665555555543 6688999999998 6799999
Q ss_pred eCCCeEEEEECCCCeeeeEecCCCCceeEEEEec-CCCeEEEEEeeCCCeEEEEECCCCeeeEEe---cCCCCCeEEEEE
Q psy6127 240 SDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTH-SKTTAIHASTKVDATLRYLSLHDNKYVRYF---PGHVRKVSSLNL 315 (515)
Q Consensus 240 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~---~~h~~~v~~l~~ 315 (515)
+.||.|++||+.+++.+..+.+|...|.+++|+| ++..+++++ .|+.|++||+++++.+..+ .+|...|.+++|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS--KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEe--CCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 9999999999999999999999999999999999 777666554 7999999999999999888 789999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-----------------------------cCCCeeEEEECCCCCEEEEE
Q psy6127 316 SPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-----------------------------LSGNKPIAAYDPEGLAFAIG 366 (515)
Q Consensus 316 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------------------------~~~~~~~~~~s~~~~~l~~g 366 (515)
+|++++|++++.||.|++||+++++....+. +...+.+++|+ +++++++
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 9999999999999999999999775443221 56678899998 7799999
Q ss_pred ECCCcEEEEEeecCCCC---------CceeeecCCCCCcCeEEEEEcCC--CCEEEEEECCCcEEEEECCCCceeE----
Q psy6127 367 VNSDSIKLYDVRSYDKG---------PFASFKCPGERGCEWTGLKFSPD--GKLILVSTNGSIIRLFDAFNGNCVQ---- 431 (515)
Q Consensus 367 ~~dg~i~i~d~~~~~~~---------~~~~~~~~~~~~~~i~~l~~sp~--~~~l~~~s~dg~i~iwd~~~~~~~~---- 431 (515)
+.|+.|++||++..... ..........|...|.+++|+|+ +++|++++.||.|++||+.+++...
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 327 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT 327 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEE
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccce
Confidence 99999999999875431 11123334456777889999999 9999999999999999999886433
Q ss_pred EeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy6127 432 SLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAER 471 (515)
Q Consensus 432 ~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~ 471 (515)
.+..+. +...|.+++|+|++++|++++.||.|++||+.+
T Consensus 328 ~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 328 TLTHHK-CGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEcccc-cCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 454432 245699999999999999999999999999853
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=279.93 Aligned_cols=277 Identities=19% Similarity=0.296 Sum_probs=231.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEec--CCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeE
Q psy6127 224 INSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTIN--SKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVR 301 (515)
Q Consensus 224 I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~ 301 (515)
.++|+||+++ +||+|. |++|+|||+.+++.+..+. +|...|.+++|+|+++.+++++ .|++|++||+++++.+.
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs--~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT--SSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE--CCCcEEEeecCCceeEE
Confidence 5789999986 777765 8999999999999887765 6677899999999999887664 79999999999999999
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeE-EEE-ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeec
Q psy6127 302 YFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNV-GMI-QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRS 379 (515)
Q Consensus 302 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 379 (515)
.+.+|...+.++.+. +..+++++.++.+++|+....... ..+ .+...+..+.++++++++++++.|+.|++||+++
T Consensus 104 ~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 104 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 999999998876665 679999999999999999876543 333 4556688999999999999999999999999987
Q ss_pred CCCCCceeeecCCCCCcCeEEEEEcCCCCEE---EEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEE
Q psy6127 380 YDKGPFASFKCPGERGCEWTGLKFSPDGKLI---LVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVA 456 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 456 (515)
++.... .......+...+..++++|++..+ ++++.++.|++||............ ...+..+.|+|+++.++
T Consensus 182 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 182 GEGGWV-PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILWSPHYKELI 256 (318)
T ss_dssp BTTBSC-CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC----SSCEEEEEEETTTTEEE
T ss_pred Cccccc-ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc----eeeeeeeeecccccceE
Confidence 643222 222234566789999999976533 3556789999999998887666543 33389999999999887
Q ss_pred EEe--CCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCC
Q psy6127 457 SGS--TDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTL 512 (515)
Q Consensus 457 sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~ 512 (515)
+++ .|+.|++||+.+++++..+.+ |.+.|++++|+|++++|++++.| ++||++..
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l~g-H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 654 799999999999999999998 99999999999999999999866 99999854
No 83
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=285.77 Aligned_cols=291 Identities=18% Similarity=0.165 Sum_probs=244.0
Q ss_pred ccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeC
Q psy6127 162 LHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSD 241 (515)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~ 241 (515)
.+.+.++.+|...+.++.+ +... ..++++.++.+++|+ ....+....+.+|...|.+++|+|++++|++|+.
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-----~l~s~~~dg~v~vw~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-----KVASVSRDGTVRLWS--KDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-----EEEEEETTSEEEEEE--ESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-----EEEEEEcCCcEEEEE--CCCCEEEEEeecCCccEEEEEECCCCCEEEEecC
Confidence 3667788899777777777 3322 334778899999999 7888888999999999999999999999999999
Q ss_pred CCeEEEEECCCC---eeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcC-
Q psy6127 242 DDQIIIYDCEQG---TSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSP- 317 (515)
Q Consensus 242 dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~- 317 (515)
||.|++|++... +....+..|...|.+++| +++.++++ +.|+.|++|| .++....+..|...+.+++|.|
T Consensus 80 dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~--~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 153 (313)
T 3odt_A 80 DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISG--SWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF 153 (313)
T ss_dssp TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEE--ETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET
T ss_pred CCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEE--eCCCCEEEEc--CCcEEEecccCCCceeEEEEccC
Confidence 999999998754 567788999999999999 45555544 4799999999 7788888999999999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCeEEEEe--cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCC
Q psy6127 318 VDDSFISGSYDKTVRVWDLRQPNNVGMIQ--LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERG 395 (515)
Q Consensus 318 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 395 (515)
+++.+++++.||.|++|| .++....+. +...+.+++|+|++. +++++.||.|++||+++++ .......|.
T Consensus 154 ~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~-----~~~~~~~~~ 225 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD-----VLRTYEGHE 225 (313)
T ss_dssp TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC-----EEEEEECCS
T ss_pred CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh-----hhhhhhcCC
Confidence 899999999999999999 444555553 566789999999998 9999999999999998754 334445678
Q ss_pred cCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE
Q psy6127 396 CEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKV 475 (515)
Q Consensus 396 ~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~ 475 (515)
..+++++|+|++ .+++++.||.|++||+++++....+..+.. .+.+++|+|+++ +++++.||.|++||+.+++..
T Consensus 226 ~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 226 SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI---SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS---CEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc---eEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 899999999999 688999999999999999999988877543 499999999998 556889999999999988765
Q ss_pred EEEc
Q psy6127 476 CVLD 479 (515)
Q Consensus 476 ~~~~ 479 (515)
....
T Consensus 301 ~~~~ 304 (313)
T 3odt_A 301 SEDE 304 (313)
T ss_dssp C---
T ss_pred ehhh
Confidence 5443
No 84
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.8e-36 Score=292.21 Aligned_cols=248 Identities=15% Similarity=0.190 Sum_probs=200.5
Q ss_pred eccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeeEecCCCCceeEEEEecC--CCeEEEEEeeCCCeEEE
Q psy6127 216 VFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGT--SKNTINSKKYGVDLIKFTHS--KTTAIHASTKVDATLRY 291 (515)
Q Consensus 216 ~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~~~d~~v~v 291 (515)
.+.+|.+.|++++|+|+|++||+|+.|++|++||+.+++ .+..+.+|...|.+++|+++ ++.++++ +.|++|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~--s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASC--SYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEE--ETTSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEE--ECCCEEEE
Confidence 467999999999999999999999999999999998775 46788999999999999863 6666655 48999999
Q ss_pred EECCCCe--eeEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCeEEE---E-ecCCCeeEEEECCC----
Q psy6127 292 LSLHDNK--YVRYFPGHVRKVSSLNLSPV--DDSFISGSYDKTVRVWDLRQPNNVGM---I-QLSGNKPIAAYDPE---- 359 (515)
Q Consensus 292 wd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~---~-~~~~~~~~~~~s~~---- 359 (515)
||+++++ ....+.+|...|.+++|+|+ +.+|++|+.|++|++||++.+..... + .+...+.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence 9999873 56778899999999999998 77999999999999999987643221 1 23445788999997
Q ss_pred -------------CCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCC----CEEEEEECCCcEEEE
Q psy6127 360 -------------GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDG----KLILVSTNGSIIRLF 422 (515)
Q Consensus 360 -------------~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~----~~l~~~s~dg~i~iw 422 (515)
+++|++|+.|++|++||++... ..........|...|.+++|+|++ ++|++++.|++|++|
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG--QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTS--CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCC--ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 4789999999999999996532 112334456788899999999986 899999999999999
Q ss_pred ECCCCc----eeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 423 DAFNGN----CVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 423 d~~~~~----~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
++.+.. ....+..+ ...|.+++|+|++++|++++.||.|++|+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~---~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKF---NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECSSTTCCCCBCCEEEEC---SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EccCccccchhhhhhhcC---CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 987631 12233333 4459999999999999999999999999975
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-35 Score=293.55 Aligned_cols=284 Identities=17% Similarity=0.240 Sum_probs=224.5
Q ss_pred eCCCCcEEEEccceeeeeEeeeeccc-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEe
Q psy6127 194 SRSSRTITKCSENLVRSYRVAKVFRE-NTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFT 272 (515)
Q Consensus 194 s~~~~~~i~~wd~~~~~~~~~~~~~~-h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 272 (515)
+++.++.+++|+ ...++....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 108 ~~~~d~~v~lw~--~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 185 (401)
T 4aez_A 108 AVALERNVYVWN--ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 185 (401)
T ss_dssp EEEETTEEEEEE--TTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE
T ss_pred EEECCCeEEEee--CCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC
Confidence 455678899999 666777766665 89999999999999999999999999999999999999999999999999995
Q ss_pred cCCCeEEEEEeeCCCeEEEEECC-CCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-ecCCC
Q psy6127 273 HSKTTAIHASTKVDATLRYLSLH-DNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI-QLSGN 350 (515)
Q Consensus 273 ~~~~~l~~~s~~~d~~v~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~ 350 (515)
+ ..++++ +.|+.|++||++ .+..+..+.+|.+.|.+++|+|++++|++|+.|+.|++||+++++....+ .+...
T Consensus 186 ~--~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 261 (401)
T 4aez_A 186 R--HVLSSG--SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA 261 (401)
T ss_dssp T--TEEEEE--ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSC
T ss_pred C--CEEEEE--cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcce
Confidence 4 444444 589999999998 56778888999999999999999999999999999999999999988877 45667
Q ss_pred eeEEEECCCCC-EEEEEE--CCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE--CCCcEEEEECC
Q psy6127 351 KPIAAYDPEGL-AFAIGV--NSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST--NGSIIRLFDAF 425 (515)
Q Consensus 351 ~~~~~~s~~~~-~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s--~dg~i~iwd~~ 425 (515)
+.+++|+|++. .+++++ .|+.|++||++++. ..... .+...+.+++|+|+++++++++ .||.|++||+.
T Consensus 262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-----~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-----RVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-----EEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-----EEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence 99999999764 556654 69999999998754 22222 2456799999999999999954 89999999999
Q ss_pred CCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEE
Q psy6127 426 NGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQ 490 (515)
Q Consensus 426 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 490 (515)
+++...... ...+...|.+++|+|+|++|++++.||.|++|++.+++.+......+..+...+.
T Consensus 336 ~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 336 SSGLTKQVD-IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp TTEEEEEEE-EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------------------
T ss_pred CccceeEEE-ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccccCCCcccee
Confidence 876655432 1224455999999999999999999999999999999887765442334444443
No 86
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2e-35 Score=288.30 Aligned_cols=291 Identities=15% Similarity=0.181 Sum_probs=220.6
Q ss_pred eeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeeeEecCCCCceeEEEEec--CCCeEEEEEeeCCCe
Q psy6127 215 KVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQG----TSKNTINSKKYGVDLIKFTH--SKTTAIHASTKVDAT 288 (515)
Q Consensus 215 ~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~~~d~~ 288 (515)
..+.+|.+.|++++|+|++++||+|+.||.|++||+.++ +....+.+|...|.+++|+| ++..+++++ .|+.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~--~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS--YDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE--TTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc--CCCe
Confidence 457899999999999999999999999999999999876 46677889999999999999 477666554 7999
Q ss_pred EEEEECCCC---------eeeEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCeEEEE------------
Q psy6127 289 LRYLSLHDN---------KYVRYFPGHVRKVSSLNLSPV--DDSFISGSYDKTVRVWDLRQPNNVGMI------------ 345 (515)
Q Consensus 289 v~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~------------ 345 (515)
|++||++++ +.+..+.+|...|.+++|+|+ ++++++++.||.|++||+++++.+..+
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999999887 667888999999999999999 999999999999999999987754332
Q ss_pred --ecCCCeeEEEECCC---CCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCC----CEEEEEECC
Q psy6127 346 --QLSGNKPIAAYDPE---GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDG----KLILVSTNG 416 (515)
Q Consensus 346 --~~~~~~~~~~~s~~---~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~----~~l~~~s~d 416 (515)
.+...+.+++|+|+ +..+++++.++.+.+|+..... .........|...|++++|+|++ ++|++++.|
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK---LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC---EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc---eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 23445789999997 9999999999999777766543 12244456788899999999998 899999999
Q ss_pred CcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEE----eCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEEC
Q psy6127 417 SIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASG----STDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFN 492 (515)
Q Consensus 417 g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sg----s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 492 (515)
|.|++||++++........... .......++....++.+ .....+.+|+....+++..+.+ |.+.|++++|+
T Consensus 240 g~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s 315 (351)
T 3f3f_A 240 GRIRIFKITEKLSPLASEESLT---NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD-HNGEVWSVSWN 315 (351)
T ss_dssp SCEEEEEEEECC------------------------------------------CCSEEEEEEEEECT-TSSCEEEEEEC
T ss_pred CeEEEEeCCCCcCccccCCccc---ceeccCCCcccccccccccccccceeeeecccccccEEEEEec-ccccEEEEEEc
Confidence 9999999987755443332211 13334444444444433 3445567777777888888988 99999999999
Q ss_pred CCCCEEEEeeCC--EEEEcCCCCC
Q psy6127 493 PKYHMLASACSN--MAFWIPTLSA 514 (515)
Q Consensus 493 p~~~~las~~~d--v~iW~~~~~~ 514 (515)
|++++|++++.| +++|+++...
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTTS
T ss_pred CCCCEEEEecCCCcEEEEecCcCc
Confidence 999999999865 9999998653
No 87
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-35 Score=290.57 Aligned_cols=257 Identities=15% Similarity=0.194 Sum_probs=216.7
Q ss_pred EeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeeEecCCCCceeEEEEecC--CCeEEEEEeeCCC
Q psy6127 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCE--QGTSKNTINSKKYGVDLIKFTHS--KTTAIHASTKVDA 287 (515)
Q Consensus 212 ~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~~~d~ 287 (515)
++...+++|.+.|++++|+|++++||+|+.||.|++||+. +++....+.+|...|.+++|+++ +..+++++ .|+
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg 79 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDG 79 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTS
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec--cCC
Confidence 5667889999999999999999999999999999999998 56777889999999999999987 77666554 799
Q ss_pred eEEEEECCCCe--eeEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCeE---EEEecCCCeeEEEECC--
Q psy6127 288 TLRYLSLHDNK--YVRYFPGHVRKVSSLNLSPV--DDSFISGSYDKTVRVWDLRQPNNV---GMIQLSGNKPIAAYDP-- 358 (515)
Q Consensus 288 ~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~s~-- 358 (515)
.|++||+.+++ .+..+.+|...|.+++|+|+ +++|++++.|+.|++||++++... ....+...+.+++|+|
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 99999999987 77888899999999999999 899999999999999999987432 2235566799999999
Q ss_pred -----------CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCC---CCEEEEEECCCcEEEEEC
Q psy6127 359 -----------EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPD---GKLILVSTNGSIIRLFDA 424 (515)
Q Consensus 359 -----------~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~---~~~l~~~s~dg~i~iwd~ 424 (515)
++..+++++.||.|++||++..... .........|...|.+++|+|+ +++|++++.||.|++||+
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999999999999999875422 1222334568889999999999 899999999999999999
Q ss_pred CCCcee--EEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy6127 425 FNGNCV--QSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAER 471 (515)
Q Consensus 425 ~~~~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~ 471 (515)
+++... ..+.....+...+.+++|+|+|++|++++.||.|++|++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 887422 22222333556699999999999999999999999999873
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.8e-35 Score=289.38 Aligned_cols=288 Identities=12% Similarity=0.090 Sum_probs=233.6
Q ss_pred CceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE--eeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy6127 171 PHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR--VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIY 248 (515)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~--~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iw 248 (515)
|...+.++.+.+... +.++++.++.+++|+ ....+ +...+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 7 ~~~~i~~~~~s~~~~-----~l~~~~~d~~v~i~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-----QIAICPNNHEVHIYE--KSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp CSSCCCEEEECTTSS-----EEEEECSSSEEEEEE--EETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCCeEEEEECCCCC-----EEEEEeCCCEEEEEe--CCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 444566666665432 233667788999999 55554 889999999999999999999999999999999999
Q ss_pred ECCCCeeeeE--ecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCee----eEEecCCCCCeEEEEEcCCCCEE
Q psy6127 249 DCEQGTSKNT--INSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKY----VRYFPGHVRKVSSLNLSPVDDSF 322 (515)
Q Consensus 249 d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l 322 (515)
|+.+++.... +..|...|.+++|+|+++.+++++ .|+.|++||++.++. .....+|...|.+++|+|++++|
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS--GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE--TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe--CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 9988875444 467889999999999998877765 799999999988762 33346789999999999999999
Q ss_pred EEEeCCCcEEEEEcC------------------CCCeEEEE-ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCC
Q psy6127 323 ISGSYDKTVRVWDLR------------------QPNNVGMI-QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKG 383 (515)
Q Consensus 323 ~s~s~dg~i~iwd~~------------------~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~ 383 (515)
++++.||.|++||++ .++.+..+ .+...+.+++|+|+++++++++.|+.|++||+++.+
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-- 235 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM-- 235 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT--
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--
Confidence 999999999999954 56777777 455679999999999999999999999999999865
Q ss_pred CceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCC--Cce--eEE---------------------------
Q psy6127 384 PFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFN--GNC--VQS--------------------------- 432 (515)
Q Consensus 384 ~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~--~~~--~~~--------------------------- 432 (515)
.......+...+.+++|+|++++++++ .|+.|++|++.+ ++. ...
T Consensus 236 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
T 1k8k_C 236 ---AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 311 (372)
T ss_dssp ---EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred ---eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccc
Confidence 333344667789999999999988877 999999999987 421 100
Q ss_pred -------eeccccCCCCCEEEEEe-cCC---CEEEEEeCCCcEEEEECCCCe
Q psy6127 433 -------LSGVLNNNASPLEATFT-PDS---QFVASGSTDGQVHIWNAERGY 473 (515)
Q Consensus 433 -------~~~~~~~~~~i~~~~~s-p~g---~~l~sgs~dg~I~iwd~~~~~ 473 (515)
......|...|++++|+ ++| ++|++|+.||.|++||+.+++
T Consensus 312 ~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 312 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 11112456679999966 666 999999999999999987654
No 89
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-34 Score=277.74 Aligned_cols=249 Identities=14% Similarity=0.245 Sum_probs=204.7
Q ss_pred eEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC--CeeeEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEE
Q psy6127 257 NTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD--NKYVRYFPGHVRKVSSLNLSPV--DDSFISGSYDKTVR 332 (515)
Q Consensus 257 ~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~ 332 (515)
..+.+|...|.+++|+|+++.+++++ .|++|++||+.+ .+.+.++.+|.++|.+++|+|+ +++|++|+.|++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s--~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCS--SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEE--TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEe--CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 45778999999999999999877665 799999999974 4678899999999999999864 88999999999999
Q ss_pred EEEcCCCC--eEEEE-ecCCCeeEEEECCC--CCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCC-
Q psy6127 333 VWDLRQPN--NVGMI-QLSGNKPIAAYDPE--GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPD- 406 (515)
Q Consensus 333 iwd~~~~~--~~~~~-~~~~~~~~~~~s~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~- 406 (515)
+||+++++ .+..+ .+...+.+++|+|+ +.+|++++.|++|++||++...... ......|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CEEEECCSSCEEEEEECCCC
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---eeeeecccCccceEeecCCc
Confidence 99999874 34444 35567999999997 8999999999999999998753211 1223467788999999997
Q ss_pred ------------CCEEEEEECCCcEEEEECCCCc----eeEEeeccccCCCCCEEEEEecCC---CEEEEEeCCCcEEEE
Q psy6127 407 ------------GKLILVSTNGSIIRLFDAFNGN----CVQSLSGVLNNNASPLEATFTPDS---QFVASGSTDGQVHIW 467 (515)
Q Consensus 407 ------------~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~i~~~~~sp~g---~~l~sgs~dg~I~iw 467 (515)
+++|++|+.|++|++||+++++ ....+.+| ...|.+++|+|++ .+|++++.|++|++|
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H---~~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---SDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC---SSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC---CCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 5799999999999999998776 44555554 4459999999985 899999999999999
Q ss_pred ECCCCe---EEEEEc-CCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 468 NAERGY---KVCVLD-GDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 468 d~~~~~---~~~~~~-~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
|+.++. ....+. ..|...|++++|+|++++||+++.| +++|+....
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 997642 222331 2388899999999999999999865 999998754
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.1e-35 Score=295.33 Aligned_cols=275 Identities=19% Similarity=0.353 Sum_probs=234.1
Q ss_pred eeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEE
Q psy6127 214 AKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLS 293 (515)
Q Consensus 214 ~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd 293 (515)
+....+|...|.+++| ++++|++|+.||.|++||..+++....+.+|...|.+++| +++.++++ +.||.|++||
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg--~~dg~i~vwd 199 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITG--SSDSTVRVWD 199 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEE--ETTSCEEEEE
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEE--cCCCeEEEEE
Confidence 3445678888999987 7899999999999999999999999999999999999999 56665554 4799999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEE---EE-ecCCCeeEEEECCCCCEEEEEECC
Q psy6127 294 LHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVG---MI-QLSGNKPIAAYDPEGLAFAIGVNS 369 (515)
Q Consensus 294 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~-~~~~~~~~~~~s~~~~~l~~g~~d 369 (515)
+.+++.+..+.+|...|.+++|+ +..+++|+.||.|++||+++++... .+ .+...+.++++ +++++++|+.|
T Consensus 200 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 99999999999999999999997 4699999999999999999887652 33 34556777777 88999999999
Q ss_pred CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEe
Q psy6127 370 DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFT 449 (515)
Q Consensus 370 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s 449 (515)
|.|++||+++++ .......|...+.++.| +++++++|+.||.|++||+++++++..+.+|.. .+.+++|
T Consensus 276 g~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~~~~- 344 (435)
T 1p22_A 276 RTIKVWNTSTCE-----FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRCIRF- 344 (435)
T ss_dssp SEEEEEETTTCC-----EEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS---CEEEEEC-
T ss_pred CeEEEEECCcCc-----EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC---cEEEEEe-
Confidence 999999998764 34444567788999998 467999999999999999999999998887544 4888888
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCe---------EEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 450 PDSQFVASGSTDGQVHIWNAERGY---------KVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 450 p~g~~l~sgs~dg~I~iwd~~~~~---------~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
++.++++|+.||.|++||+.+++ ++..+.+ |.+.|++++| ++.++++++.| +++|++...
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE-HSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC-CSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred -cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC-CCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 78999999999999999997766 8888887 9999999999 67788988855 999998754
No 91
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-35 Score=300.57 Aligned_cols=300 Identities=15% Similarity=0.143 Sum_probs=223.4
Q ss_pred ccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcC-CCCEEEEEeCCCe
Q psy6127 166 SSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSS-DGSLLISCSDDDQ 244 (515)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~sp-d~~~lasgs~dg~ 244 (515)
....+|...|.+++|.|..... | ++++.|+.|++||-..........+.+|.+.|++++|+| ++++|++|+.||+
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~---l-asGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPST---V-AVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTC---E-EEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred ccCCCCCCCEEEEEEeCCCCCE---E-EEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 3444555568888887644322 3 478889999999943334445567789999999999998 7899999999999
Q ss_pred EEEEECCCCeeeeEecC--CCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCC-E
Q psy6127 245 IIIYDCEQGTSKNTINS--KKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDD-S 321 (515)
Q Consensus 245 i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~ 321 (515)
|++||++++........ +...+.+++|+|++..++++ +.||.|++||++ ++.+..+.+|...|.+++|+|+++ +
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g--~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTG--DNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEE--CSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEE--eCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceE
Confidence 99999987655443333 34567899999999877655 479999999986 456778899999999999999986 7
Q ss_pred EEEEeCCCcEEEEEcCCCCeEEEE----ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeec-CCCCCc
Q psy6127 322 FISGSYDKTVRVWDLRQPNNVGMI----QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKC-PGERGC 396 (515)
Q Consensus 322 l~s~s~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~ 396 (515)
+++|+.|++|++||+++.+....+ .+...+.+++|+|+|++|++++.||.|++||++++.......... ......
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccc
Confidence 889999999999999887654333 455679999999999999999999999999998754211110000 001111
Q ss_pred CeEEEEEcCCCCEEEEEE------------CCCcEEEEECCCCceeEEeeccccCCCCCEEE-EEecCCCEEEEEeCCCc
Q psy6127 397 EWTGLKFSPDGKLILVST------------NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEA-TFTPDSQFVASGSTDGQ 463 (515)
Q Consensus 397 ~i~~l~~sp~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~-~~sp~g~~l~sgs~dg~ 463 (515)
.+....|+|++.+++++. .++.|++||..+++.+..+..+ +...|.++ +|+|+|++|++|+ |+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~--~~~~v~s~~~fspdg~~lasg~-d~~ 422 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP--ESSGISSLNEFNPMGDTLASAM-GYH 422 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS--SCCCCCCEEEECTTSSCEEEEC-SSE
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC--CCCcEEEEEEECCCCCEEEEEc-CCc
Confidence 223456777777766654 3457999999999988877542 33347776 6999999999876 789
Q ss_pred EEEEECCCCeEE
Q psy6127 464 VHIWNAERGYKV 475 (515)
Q Consensus 464 I~iwd~~~~~~~ 475 (515)
|+|||+++++..
T Consensus 423 i~iW~~~~gk~r 434 (435)
T 4e54_B 423 ILIWSQQEARTR 434 (435)
T ss_dssp EEECCCC-----
T ss_pred EEEEECCcCeee
Confidence 999999988753
No 92
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.3e-35 Score=289.04 Aligned_cols=285 Identities=14% Similarity=0.120 Sum_probs=217.0
Q ss_pred eEEEEEEeeccccceeeeeeeCCC------CcEEEEccceeeee----------EeeeeccccCCcEEEEEEcCCCCEEE
Q psy6127 174 VSLFVTFVSRVLTMAASLAHSRSS------RTITKCSENLVRSY----------RVAKVFRENTDKINSLDYSSDGSLLI 237 (515)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~s~~~------~~~i~~wd~~~~~~----------~~~~~~~~h~~~I~~l~~spd~~~la 237 (515)
+|++++|.+.... |+..+++ +..+++|+ +... .....+.+|...|.+++++ ++.++
T Consensus 16 PV~sv~fs~dg~~----l~sGGg~~~~sGi~N~i~~w~--~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~ 87 (365)
T 4h5i_A 16 PAYGAKFLNNDTL----LVAGGGGEGNNGIPNKLTVLR--VDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIIL 87 (365)
T ss_dssp CEEEEEEEETTEE----EEEEECCSSSSSCCEEEEEEE--ECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEE
T ss_pred CEEEEEEeCCCcE----EEEECCCccccCCCCEEEEEE--EcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEE
Confidence 4777777665432 3322221 23588887 3211 1123578999999998775 44666
Q ss_pred EE-----------eCCCeEEEEECCCCeeee----Ee-----cCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCC
Q psy6127 238 SC-----------SDDDQIIIYDCEQGTSKN----TI-----NSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDN 297 (515)
Q Consensus 238 sg-----------s~dg~i~iwd~~~~~~~~----~~-----~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~ 297 (515)
+| +.|+++++|++.+..... .. ..+...+.+++|+|||+.+++++++.|++|++||++++
T Consensus 88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 65 457789999987543221 11 23345689999999999999999889999999999999
Q ss_pred eeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE---ecCCCeeEEEECCCCCEEEEEECCC----
Q psy6127 298 KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI---QLSGNKPIAAYDPEGLAFAIGVNSD---- 370 (515)
Q Consensus 298 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg---- 370 (515)
+++..+. |...|.+++|+|||+++++++. +.+.+|+..+++..... .+...+.+++|+|+++.+++++.++
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred cEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 9998886 7788999999999999999885 55677777777766543 2344588999999999999999887
Q ss_pred cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEe-eccccCCCCCEEEEEe
Q psy6127 371 SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSL-SGVLNNNASPLEATFT 449 (515)
Q Consensus 371 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~i~~~~~s 449 (515)
.++.|++........ .......|...|++++|+|+|++|++|+.|++|++||+++++++..+ .+| ...|++++|+
T Consensus 246 ~i~~~~~~~~~~~~~-~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH---~~~V~~v~fS 321 (365)
T 4h5i_A 246 VLTKISIKSGNTSVL-RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH---SFAITEVTIS 321 (365)
T ss_dssp EEEEEEEETTEEEEE-EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS---SSCEEEEEEC
T ss_pred EEeecccccceecce-eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc---cCCEEEEEEC
Confidence 688888876432111 12223467778999999999999999999999999999999998875 454 4459999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCC
Q psy6127 450 PDSQFVASGSTDGQVHIWNAERG 472 (515)
Q Consensus 450 p~g~~l~sgs~dg~I~iwd~~~~ 472 (515)
|||++|++|+.|++|+|||+..+
T Consensus 322 pdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 322 PDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999653
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.5e-34 Score=289.98 Aligned_cols=277 Identities=17% Similarity=0.235 Sum_probs=221.2
Q ss_pred CcEEEEccceeeeeEeeeec--cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCC
Q psy6127 198 RTITKCSENLVRSYRVAKVF--RENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSK 275 (515)
Q Consensus 198 ~~~i~~wd~~~~~~~~~~~~--~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 275 (515)
|..|++|| ..++++.+.+ .+|...|++++|+|+|++||+|+.||+|++||+.+++.+..+.+|...+.++++++
T Consensus 124 d~tV~lWd--~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~-- 199 (420)
T 4gga_A 124 DNSVYLWS--ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-- 199 (420)
T ss_dssp TTEEEEEE--TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--
T ss_pred CCEEEEEE--CCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC--
Confidence 67899999 7777777655 57888999999999999999999999999999999999999999999999988864
Q ss_pred CeEEEEEeeCCCeEEEEECCCC-eeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCe----EE-EEecCC
Q psy6127 276 TTAIHASTKVDATLRYLSLHDN-KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN----VG-MIQLSG 349 (515)
Q Consensus 276 ~~l~~~s~~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~-~~~~~~ 349 (515)
..++ +++.|+.+++||.... ..+..+.+|...+..+.|+|+++.+++++.|+.+++||..+++. +. ...+..
T Consensus 200 ~~l~--sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~ 277 (420)
T 4gga_A 200 YILS--SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277 (420)
T ss_dssp TEEE--EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS
T ss_pred CEEE--EEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC
Confidence 4444 4468999999998764 45678899999999999999999999999999999999987753 22 235556
Q ss_pred CeeEEEECCCCC-EEEEE--ECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE--CCCcEEEEEC
Q psy6127 350 NKPIAAYDPEGL-AFAIG--VNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST--NGSIIRLFDA 424 (515)
Q Consensus 350 ~~~~~~~s~~~~-~l~~g--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s--~dg~i~iwd~ 424 (515)
.+.+++|+|.+. .++++ +.|++|++||++++. ..... .....+.++.|+|+++.+++++ .|+.|++||+
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-----~~~~~-~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~ 351 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----CLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 351 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-----EEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-----cceee-ccccceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence 789999999654 55554 479999999998754 22222 2334688999999999998876 7899999999
Q ss_pred CCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEE
Q psy6127 425 FNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQ 490 (515)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 490 (515)
.+++++..+.+|.. .|.+++|+|+|++|++|+.||+|+|||+.+..+...... +...+....
T Consensus 352 ~~~~~v~~l~gH~~---~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~-~~~~~~~~s 413 (420)
T 4gga_A 352 PTMAKVAELKGHTS---RVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRER-EKASAAKSS 413 (420)
T ss_dssp TTCCEEEEECCCSS---CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred CCCcEEEEEcCCCC---CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhh-ccCCccccc
Confidence 99999999988654 499999999999999999999999999987666555544 444433333
No 94
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-36 Score=308.46 Aligned_cols=316 Identities=9% Similarity=0.014 Sum_probs=224.4
Q ss_pred hhheeecccccccccccCCCCcCCCcchhhcccc----ccccCCceeEEEEEEeeccccc-eeeeeeeCCCCcEEEEccc
Q psy6127 132 LKIVAKSENMCNLTKLDLPYNKLGSWDFELLHSL----SSLESPHFVSLFVTFVSRVLTM-AASLAHSRSSRTITKCSEN 206 (515)
Q Consensus 132 ~~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~-~~~l~~s~~~~~~i~~wd~ 206 (515)
.+++|+++.++.| ++||+.+++.. .++.+|...+..++|.+..... ...+.++++.|+.+++|+
T Consensus 173 ~~~laS~s~D~tI----------~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd- 241 (524)
T 2j04_B 173 LEMFDKEKHSSCI----------QIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLE- 241 (524)
T ss_dssp ---------CEEE----------EEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEE-
T ss_pred hhhhccCCCCceE----------EEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEE-
Confidence 3567778888888 99999887643 3355555557778887752100 011344788899999998
Q ss_pred eeeeeE-----------eeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeeEecCCCCceeEE--EEe
Q psy6127 207 LVRSYR-----------VAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGT-SKNTINSKKYGVDLI--KFT 272 (515)
Q Consensus 207 ~~~~~~-----------~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~--~~~ 272 (515)
+...+ +..++.+|...|++++|+|++ .||+|+.||+|++||+.++. +...+.+|...|.++ +|+
T Consensus 242 -~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s 319 (524)
T 2j04_B 242 -IIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYS 319 (524)
T ss_dssp -CCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECC
T ss_pred -cCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcC
Confidence 44332 234788999999999999865 89999999999999999764 456689999999999 567
Q ss_pred cCC-CeEEEEEeeCCCeEEEEECCCCeeeEEecCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-ecC
Q psy6127 273 HSK-TTAIHASTKVDATLRYLSLHDNKYVRYFPGHVR--KVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI-QLS 348 (515)
Q Consensus 273 ~~~-~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~ 348 (515)
|++ ..++++ +.|++|++||++++++...+.+|.. .|.+++|+|+++.+++++.|++|++||++++.+...+ .+.
T Consensus 320 ~~g~~~laS~--S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~ 397 (524)
T 2j04_B 320 DFEDTVVSTV--AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE 397 (524)
T ss_dssp TTSCCEEEEE--ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS
T ss_pred CCCCeEEEEe--ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC
Confidence 776 545444 5899999999999888777777754 5889999999999999999999999999999876655 566
Q ss_pred CCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeec--CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECC-
Q psy6127 349 GNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKC--PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAF- 425 (515)
Q Consensus 349 ~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~- 425 (515)
..+.+++|+|+++.|++|+.||+|++||+.... ...... ...+...+.+++|+|+++.+. ... .+.+|+..
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~---~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~ 471 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARRL---LHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTV 471 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCSST---TTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC---
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechHhh---ccccccCccceeeeEEEEeccCCCCCeEE-ccC--Cceeccccc
Confidence 779999999999999999999999999986521 111000 011222467899999998552 222 23344332
Q ss_pred CCceeEEeeccccCCCCCEEEEEecCCC---EEEEEeCCCcEEEEECCC
Q psy6127 426 NGNCVQSLSGVLNNNASPLEATFTPDSQ---FVASGSTDGQVHIWNAER 471 (515)
Q Consensus 426 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~---~l~sgs~dg~I~iwd~~~ 471 (515)
++.++..+.+|. ..|.+++|+|++. ++|+|+.||.|+||++.-
T Consensus 472 ~g~~~~~l~gh~---~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 472 NDVSKAKIDAHG---INITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ----------CC---CSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCcceeeecCCC---ceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 466666776654 4499999999964 999999999999999863
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=298.25 Aligned_cols=299 Identities=11% Similarity=0.094 Sum_probs=236.2
Q ss_pred Ccchhhccccccc-cCCceeEEEEEEee-ccccceeeeeeeCCCCcEEEEccceeee------eEeeeeccccCCcEEEE
Q psy6127 156 SWDFELLHSLSSL-ESPHFVSLFVTFVS-RVLTMAASLAHSRSSRTITKCSENLVRS------YRVAKVFRENTDKINSL 227 (515)
Q Consensus 156 ~wd~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~~~~i~~wd~~~~~------~~~~~~~~~h~~~I~~l 227 (515)
.|+ .+++.+.++ ++|...|.++.+.+ ... +.++++.|+.+++|+ +.. .++...+ +|.+.|+++
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~-----~l~s~s~dg~v~vwd--~~~~~~~~~~~~~~~~-~h~~~v~~~ 117 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETP-----YLITGSDQGVIKIWN--LKEIIVGEVYSSSLTY-DCSSTVTQI 117 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSC-----EEEEEETTSEEEEEE--HHHHHTTCCCSCSEEE-ECSSCEEEE
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCC-----EEEEecCCceEEEeE--CcccccCcccceeeec-cCCCCEEEE
Confidence 588 568888888 77777788888877 432 334788999999998 444 2223333 599999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECC---CCeeeeEecC------------CCCceeEEE--EecCCCeEEEEEeeCCCeEE
Q psy6127 228 DYSSDGSLLISCSDDDQIIIYDCE---QGTSKNTINS------------KKYGVDLIK--FTHSKTTAIHASTKVDATLR 290 (515)
Q Consensus 228 ~~spd~~~lasgs~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~s~~~d~~v~ 290 (515)
+|+|++++|++|+.||+|++||+. +++....+.. +...+.++. +++++..++++ +.|+.|+
T Consensus 118 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~ 195 (437)
T 3gre_A 118 TMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL--TNLSRVI 195 (437)
T ss_dssp EECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE--ETTSEEE
T ss_pred EEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE--eCCCeEE
Confidence 999999999999999999999994 4544443322 445666666 34566555544 4799999
Q ss_pred EEECCCCeeeEEecC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe--cCCCeeEEEEC----CCCCE
Q psy6127 291 YLSLHDNKYVRYFPG--HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ--LSGNKPIAAYD----PEGLA 362 (515)
Q Consensus 291 vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s----~~~~~ 362 (515)
+||+++++.+..+.+ |.+.|++++|+|++++|++|+.||.|++||+++++.+..+. +...+.+++|+ |++.+
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~ 275 (437)
T 3gre_A 196 IFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI 275 (437)
T ss_dssp EEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred EEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE
Confidence 999999999999988 89999999999999999999999999999999999988874 34467888555 56889
Q ss_pred EEEEECCCcEEEEEeecCCCCCceeeec---------------------CC--CCCcCeEEEEEcCCCCEEEEEECCCcE
Q psy6127 363 FAIGVNSDSIKLYDVRSYDKGPFASFKC---------------------PG--ERGCEWTGLKFSPDGKLILVSTNGSII 419 (515)
Q Consensus 363 l~~g~~dg~i~i~d~~~~~~~~~~~~~~---------------------~~--~~~~~i~~l~~sp~~~~l~~~s~dg~i 419 (515)
+++|+.||.|++||+++++.. ..+.. .. .|...|++++|+ ++++|++++.|+.|
T Consensus 276 l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i 352 (437)
T 3gre_A 276 VVGGSSKTFLTIWNFVKGHCQ--YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSI 352 (437)
T ss_dssp EEEESTTEEEEEEETTTTEEE--EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred EEEEcCCCcEEEEEcCCCcEE--EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence 999999999999999864311 11110 01 266779999999 77899999999999
Q ss_pred EEEECCCCceeEEeeccc----------------------------------cCCCCCEEEEEecC--CCEEEEEeCCCc
Q psy6127 420 RLFDAFNGNCVQSLSGVL----------------------------------NNNASPLEATFTPD--SQFVASGSTDGQ 463 (515)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~----------------------------------~~~~~i~~~~~sp~--g~~l~sgs~dg~ 463 (515)
++||+.++++...+.++. .+...|.+++|+++ +.+|++|+.||.
T Consensus 353 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~ 432 (437)
T 3gre_A 353 VMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGL 432 (437)
T ss_dssp EEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred EEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCce
Confidence 999999998887777531 15566999999998 789999999999
Q ss_pred EEEEE
Q psy6127 464 VHIWN 468 (515)
Q Consensus 464 I~iwd 468 (515)
|+||+
T Consensus 433 I~iw~ 437 (437)
T 3gre_A 433 IGIFQ 437 (437)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99995
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.1e-34 Score=291.88 Aligned_cols=291 Identities=17% Similarity=0.271 Sum_probs=229.7
Q ss_pred CCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy6127 170 SPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYD 249 (515)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd 249 (515)
+|...+.+++++++. + ++++.++.+++|| ..++++...+.+|.+.|.+++| ++++|++|+.||+|++||
T Consensus 131 ~~~~~v~~~~~d~~~------l-~~g~~dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 131 ETSKGVYCLQYDDQK------I-VSGLRDNTIKIWD--KNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199 (435)
T ss_dssp SSCCCEEEEECCSSE------E-EEEESSSCEEEEE--SSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred CCCCcEEEEEECCCE------E-EEEeCCCeEEEEe--CCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEE
Confidence 444458888886553 3 3677889999999 7888999999999999999999 788999999999999999
Q ss_pred CCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeee---EEecCCCCCeEEEEEcCCCCEEEEEe
Q psy6127 250 CEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYV---RYFPGHVRKVSSLNLSPVDDSFISGS 326 (515)
Q Consensus 250 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~l~s~s 326 (515)
+.+++.+..+.+|...|.+++|++ ..+++ ++.|+.|++||+.+++.. ..+.+|...|.+++| +++++++|+
T Consensus 200 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~ 273 (435)
T 1p22_A 200 VNTGEMLNTLIHHCEAVLHLRFNN--GMMVT--CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS 273 (435)
T ss_dssp SSSCCEEEEECCCCSCEEEEECCT--TEEEE--EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred CCCCcEEEEEcCCCCcEEEEEEcC--CEEEE--eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence 999999999999999999999974 34444 358999999999987765 678899999999999 588999999
Q ss_pred CCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcC
Q psy6127 327 YDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSP 405 (515)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 405 (515)
.||.|++||+++++.+..+. +...+.++.+ +++.+++|+.||.|++||++++. .......|...|.+++|
T Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA-----CLRVLEGHEELVRCIRF-- 344 (435)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEC--
T ss_pred CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCC-----EEEEEeCCcCcEEEEEe--
Confidence 99999999999999998885 4456777777 57899999999999999998864 44445678889999998
Q ss_pred CCCEEEEEECCCcEEEEECCCCc---------eeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy6127 406 DGKLILVSTNGSIIRLFDAFNGN---------CVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVC 476 (515)
Q Consensus 406 ~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~ 476 (515)
+++++++|+.||.|++||+.++. ++..+..|.. .|.+++| ++++|++|+.||.|++||+.++....
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG---RVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS---CCCCEEE--CSSCEEECCSSSEEEEEC--------
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC---CeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 78899999999999999987665 6777766544 4889999 68899999999999999998876655
Q ss_pred EEcCCCCCCeEEEEECC
Q psy6127 477 VLDGDHPSAVQSLQFNP 493 (515)
Q Consensus 477 ~~~~~h~~~V~~l~~sp 493 (515)
... ...+..++.|.+
T Consensus 420 ~~~--~~~~~~~~~~~~ 434 (435)
T 1p22_A 420 AEP--PRSPSRTYTYIS 434 (435)
T ss_dssp -----------------
T ss_pred cCC--CCCCccceeeec
Confidence 444 334555666544
No 97
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-35 Score=294.23 Aligned_cols=284 Identities=13% Similarity=0.169 Sum_probs=215.0
Q ss_pred EEEEEEeeccccceeeeeeeCCCCcEEEEccceeeee--EeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy6127 175 SLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSY--RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQ 252 (515)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~--~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~ 252 (515)
+.++.|.+... +.++++.++.+++|+ .... ++...+.+|.+.|++++|+|++++|++|+.|++|++||+.+
T Consensus 14 v~~~~~s~~g~-----~l~~~~~d~~i~iw~--~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 14 SYEHAFNSQRT-----EFVTTTATNQVELYE--QDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp CSCCEECSSSS-----EEECCCSSSCBCEEE--EETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EEEEEECCCCC-----EEEEecCCCEEEEEE--ccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 44455554332 334677889999999 6555 88899999999999999999999999999999999999998
Q ss_pred Ce---eeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCe---eeEEecC-CCCCeEEEEEcCCCCEEEEE
Q psy6127 253 GT---SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNK---YVRYFPG-HVRKVSSLNLSPVDDSFISG 325 (515)
Q Consensus 253 ~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~---~~~~~~~-h~~~v~~l~~~~~~~~l~s~ 325 (515)
++ ....+..|...|.+++|+|+++.+++++ .|+.|++||+++++ ....+.+ |...|.+++|+|++++|+++
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS--GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEE--SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEe--cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 77 6777888999999999999999887665 79999999999887 3677777 99999999999999999999
Q ss_pred eCCCcEEEEEcCC------------------CCeEEEEecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCcee
Q psy6127 326 SYDKTVRVWDLRQ------------------PNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFAS 387 (515)
Q Consensus 326 s~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 387 (515)
+.|+.|++||++. ++.+..+.+...+.+++|+|++++|++++.||.|++||+++....+ ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~-~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP-RA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE-EE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc-ee
Confidence 9999999999963 3344444566679999999999999999999999999999865311 11
Q ss_pred eecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--ee----------------------------------E
Q psy6127 388 FKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGN--CV----------------------------------Q 431 (515)
Q Consensus 388 ~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~--~~----------------------------------~ 431 (515)
......|...|.+++|+|++++|++++.++.+ +|+..... .. .
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 33345677889999999999999988766655 66654211 00 0
Q ss_pred Eeec-------------cccCCCCCEEEEEecCC-C---EEEEEeCCCcEEEEEC
Q psy6127 432 SLSG-------------VLNNNASPLEATFTPDS-Q---FVASGSTDGQVHIWNA 469 (515)
Q Consensus 432 ~~~~-------------~~~~~~~i~~~~~sp~g-~---~l~sgs~dg~I~iwd~ 469 (515)
.+.. ...|...|+++++.+.+ . .+++|+.||.|++||+
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0100 01155568999876643 3 6999999999999985
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-34 Score=289.92 Aligned_cols=280 Identities=13% Similarity=0.180 Sum_probs=228.4
Q ss_pred EEEEEEcCCCCE-EEEEeCCCeEEEEECCCCe----eeeEecCCCCceeEEEEec-CCCeEEEEEeeCCCeEEEEECCCC
Q psy6127 224 INSLDYSSDGSL-LISCSDDDQIIIYDCEQGT----SKNTINSKKYGVDLIKFTH-SKTTAIHASTKVDATLRYLSLHDN 297 (515)
Q Consensus 224 I~~l~~spd~~~-lasgs~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~~~d~~v~vwd~~~~ 297 (515)
...++++|+... +++++.||.|++|++.+.. ....+.+|...|.+++|+| ++..+++++ .|+.|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s--~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS--EDCTVMVWEIPDG 114 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE--TTSEEEEEECCTT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEe--CCCeEEEEEccCC
Confidence 446888887654 4457889999999996542 3456788999999999999 777666554 7999999999988
Q ss_pred -------eeeEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCeEEEEe---cCCCeeEEEECCCCCEEEEE
Q psy6127 298 -------KYVRYFPGHVRKVSSLNLSPVD-DSFISGSYDKTVRVWDLRQPNNVGMIQ---LSGNKPIAAYDPEGLAFAIG 366 (515)
Q Consensus 298 -------~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~~g 366 (515)
+++..+.+|...|.+++|+|++ +.|++++.|+.|++||+++++.+..+. +...+.+++|+|++++|+++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 6678889999999999999998 699999999999999999999988872 55679999999999999999
Q ss_pred ECCCcEEEEEeecCCCCCceeeecC-CCCCc-CeEEEEEcCCCCEEEEE---ECCCcEEEEECCCCce-eEEeeccccCC
Q psy6127 367 VNSDSIKLYDVRSYDKGPFASFKCP-GERGC-EWTGLKFSPDGKLILVS---TNGSIIRLFDAFNGNC-VQSLSGVLNNN 440 (515)
Q Consensus 367 ~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~-~i~~l~~sp~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~~~~~~ 440 (515)
+.||.|++||+++++ ..... ..|.. .+.+++|+|+++++++| +.|+.|++||+++++. ...... .+.
T Consensus 195 ~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~ 267 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGT-----VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL--DTS 267 (402)
T ss_dssp ETTSEEEEEETTTTE-----EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC--CCC
T ss_pred ecCCcEEEEeCCCCc-----eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec--cCC
Confidence 999999999998754 22222 34443 47899999999999999 7899999999998765 222221 233
Q ss_pred CCCEEEEEecCCCEEEE-EeCCCcEEEEECCCCeE-EEEEcC-CCCCCeEEEEECCCCCEEEEeeCCEEEEcCCC
Q psy6127 441 ASPLEATFTPDSQFVAS-GSTDGQVHIWNAERGYK-VCVLDG-DHPSAVQSLQFNPKYHMLASACSNMAFWIPTL 512 (515)
Q Consensus 441 ~~i~~~~~sp~g~~l~s-gs~dg~I~iwd~~~~~~-~~~~~~-~h~~~V~~l~~sp~~~~las~~~dv~iW~~~~ 512 (515)
..+.+++|+|++++|++ |+.||.|++||+.+++. +..+.. .|..+|++++|+|++.+++++++.+++|++..
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 44899999999999975 55799999999998873 333332 25689999999999999998888899999864
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.4e-34 Score=286.39 Aligned_cols=277 Identities=15% Similarity=0.172 Sum_probs=229.0
Q ss_pred eeeeCCCCcEEEEcccee--eeeEeeeeccccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------eeeeEec
Q psy6127 191 LAHSRSSRTITKCSENLV--RSYRVAKVFRENTDKINSLDYSS-DGSLLISCSDDDQIIIYDCEQG-------TSKNTIN 260 (515)
Q Consensus 191 l~~s~~~~~~i~~wd~~~--~~~~~~~~~~~h~~~I~~l~~sp-d~~~lasgs~dg~i~iwd~~~~-------~~~~~~~ 260 (515)
+.++++.++.+.+|+-.. +..+....+.+|.+.|++++|+| ++++|++|+.||+|++||+.++ +.+..+.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 128 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec
Confidence 334677888899998311 11134567889999999999999 9999999999999999999987 6678899
Q ss_pred CCCCceeEEEEecCCC-eEEEEEeeCCCeEEEEECCCCeeeEEe--cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy6127 261 SKKYGVDLIKFTHSKT-TAIHASTKVDATLRYLSLHDNKYVRYF--PGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLR 337 (515)
Q Consensus 261 ~~~~~v~~~~~~~~~~-~l~~~s~~~d~~v~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 337 (515)
+|...|.+++|+|++. .++++ +.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.||.|++||++
T Consensus 129 ~h~~~v~~~~~~p~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 129 GHTKRVGIVAWHPTAQNVLLSA--GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp CCSSCEEEEEECSSBTTEEEEE--ETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred CCCCeEEEEEECcCCCCEEEEE--cCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 9999999999999985 45444 47999999999999999999 8899999999999999999999999999999999
Q ss_pred CCCeEEEE-ecC-CC-eeEEEECCCCCEEEEE---ECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEE
Q psy6127 338 QPNNVGMI-QLS-GN-KPIAAYDPEGLAFAIG---VNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLIL 411 (515)
Q Consensus 338 ~~~~~~~~-~~~-~~-~~~~~~s~~~~~l~~g---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~ 411 (515)
+++.+..+ ..+ .. +..+.|+|+++++++| +.|+.|++||++...... ... ...+...+.+++|+|++++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~-~~~--~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 207 KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL-SLQ--ELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-EEE--ECCCCSSCEEEEEETTTTEEE
T ss_pred CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-eEE--eccCCCceeEEEEcCCCCEEE
Confidence 99988887 333 32 7889999999999999 689999999998865311 111 224556789999999999997
Q ss_pred EE-ECCCcEEEEECCCCce-eEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE
Q psy6127 412 VS-TNGSIIRLFDAFNGNC-VQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKV 475 (515)
Q Consensus 412 ~~-s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~ 475 (515)
++ +.|+.|++||+.+++. +..+..+. +...+.+++|+|++.++++ .++.+++|++.++++.
T Consensus 284 ~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 284 LCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred EEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 55 4799999999999884 55665554 4556999999999998774 5679999999887643
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.8e-34 Score=278.10 Aligned_cols=248 Identities=17% Similarity=0.256 Sum_probs=198.3
Q ss_pred EecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCe--eeEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEE
Q psy6127 258 TINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNK--YVRYFPGHVRKVSSLNLSP--VDDSFISGSYDKTVRV 333 (515)
Q Consensus 258 ~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~i 333 (515)
.+.+|...|.+++|+|+++.+++++ .|++|++||+.+++ .+..+.+|.+.|.+++|+| ++++|++|+.|++|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs--~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCS--SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEE--TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEe--CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 4568999999999999999877664 79999999998875 4678899999999999986 4889999999999999
Q ss_pred EEcCCCC--eEEEE-ecCCCeeEEEECCC--CCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCC--
Q psy6127 334 WDLRQPN--NVGMI-QLSGNKPIAAYDPE--GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPD-- 406 (515)
Q Consensus 334 wd~~~~~--~~~~~-~~~~~~~~~~~s~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-- 406 (515)
||+++++ ....+ .+...+.+++|+|+ +.+|++|+.|++|++||++.... .........|...+.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSSSCBCCCEECCCCC
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeeccccCCcceEEEccccC
Confidence 9999874 44444 35567999999998 78999999999999999986421 1122334567788999999997
Q ss_pred ---------------CCEEEEEECCCcEEEEECCCC---ceeEEeeccccCCCCCEEEEEecCC----CEEEEEeCCCcE
Q psy6127 407 ---------------GKLILVSTNGSIIRLFDAFNG---NCVQSLSGVLNNNASPLEATFTPDS----QFVASGSTDGQV 464 (515)
Q Consensus 407 ---------------~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~i~~~~~sp~g----~~l~sgs~dg~I 464 (515)
+++|++|+.|+.|++||++.+ ++...+.+ |...|.+++|+|++ ++|++++.||+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~---h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA---HSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC---CSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc---CCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 478999999999999999765 34445554 44569999999987 899999999999
Q ss_pred EEEECCCC---e-EEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 465 HIWNAERG---Y-KVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 465 ~iwd~~~~---~-~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
++|++.+. + ....+.. |.+.|++++|+|++.+||+++.| +++|+....
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHK-FNDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEE-CSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred EEEEccCccccchhhhhhhc-CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 99998762 1 1223344 88999999999999999998865 999997643
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=286.03 Aligned_cols=284 Identities=12% Similarity=0.023 Sum_probs=232.3
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeeEecC------------------------------------
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGT---SKNTINS------------------------------------ 261 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~---~~~~~~~------------------------------------ 261 (515)
..++.+++|+|||++|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977666 47899999999988 5555442
Q ss_pred ------------------CCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC--CCeeeEEec--CCCCCeEEEEEcCCC
Q psy6127 262 ------------------KKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH--DNKYVRYFP--GHVRKVSSLNLSPVD 319 (515)
Q Consensus 262 ------------------~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~--~~~~~~~~~--~h~~~v~~l~~~~~~ 319 (515)
|...|.+++|+|+++.+++++ +.|+.|++||+. +++.+..+. .|...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACA-DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEE-GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEE-CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 233699999999999865444 579999999999 888888776 567899999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCeEE----EE-ecCCCeeEEEECCC---CCEEEEEECCCcEEEEEeecCCCCCceeeecC
Q psy6127 320 DSFISGSYDKTVRVWDLRQPNNVG----MI-QLSGNKPIAAYDPE---GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCP 391 (515)
Q Consensus 320 ~~l~s~s~dg~i~iwd~~~~~~~~----~~-~~~~~~~~~~~s~~---~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 391 (515)
++|++|+.||.|++|++.+++... .+ .+...+.+++|+|+ +++|++++.|+.|++||++++.. .....
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~~~~ 237 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI----VDKWL 237 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC----EEEEC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce----eeeee
Confidence 999999999999999998876543 33 45667999999999 99999999999999999987541 22224
Q ss_pred CCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccc----------------------cCCCCCEEEEEe
Q psy6127 392 GERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVL----------------------NNNASPLEATFT 449 (515)
Q Consensus 392 ~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~~i~~~~~s 449 (515)
..|...|.+++|+ ++++|++++.|+.|++||+.+++++..+..+. .....+..++|+
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 5788899999999 99999999999999999999999888876432 223458899999
Q ss_pred cCCCEEEEEe-CCCcEEEEEC--CCC---eEEEEEcCCCCCCeEEEEECCCCCEEEEeeC--------CEEEEcCCCC
Q psy6127 450 PDSQFVASGS-TDGQVHIWNA--ERG---YKVCVLDGDHPSAVQSLQFNPKYHMLASACS--------NMAFWIPTLS 513 (515)
Q Consensus 450 p~g~~l~sgs-~dg~I~iwd~--~~~---~~~~~~~~~h~~~V~~l~~sp~~~~las~~~--------dv~iW~~~~~ 513 (515)
|+++++++++ .|+.|++|++ .++ +.+..+.. | +.|.+++|+|++.+++.++. .+++|.++..
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF-P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc-C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 9999999998 8999999999 666 77777876 6 88999999996555544432 1799987543
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.1e-33 Score=278.65 Aligned_cols=290 Identities=11% Similarity=0.119 Sum_probs=216.3
Q ss_pred eeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCC
Q psy6127 208 VRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDA 287 (515)
Q Consensus 208 ~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~ 287 (515)
....+++..+.+|.+.|++++|+|||++||+|+.|+ +++||..+++.......+ .+..+++.++++.+++++ +.|+
T Consensus 6 ~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~d~ 81 (355)
T 3vu4_A 6 MITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVT-GVKE 81 (355)
T ss_dssp -------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEEC-SSTT
T ss_pred ccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEE-CCcc
Confidence 344566667789999999999999999999998775 789999887766554433 588899999988876665 4689
Q ss_pred eEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-CeEEEEecCCCeeEEEECCCCCEEEE-
Q psy6127 288 TLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQP-NNVGMIQLSGNKPIAAYDPEGLAFAI- 365 (515)
Q Consensus 288 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~- 365 (515)
+|++||..+++.+..+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+.. ....+++++ ..+++
T Consensus 82 ~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~ 153 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYS 153 (355)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEE
T ss_pred EEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEe
Confidence 99999999999998887 67799999999754 4443 4789999999988 65555544 355667777 66666
Q ss_pred -EECCCcEEEEEeecCCCC----------Ccee-eecCCCCCcCeEEEEEcCCCCEEEEEECCCc-EEEEECCCCceeEE
Q psy6127 366 -GVNSDSIKLYDVRSYDKG----------PFAS-FKCPGERGCEWTGLKFSPDGKLILVSTNGSI-IRLFDAFNGNCVQS 432 (515)
Q Consensus 366 -g~~dg~i~i~d~~~~~~~----------~~~~-~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~-i~iwd~~~~~~~~~ 432 (515)
|+.+|.|++||+++.... .... ......|...|++++|+|+|++|++++.|++ |++||+++++++..
T Consensus 154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 578999999999874310 0001 3334678899999999999999999999998 99999999999988
Q ss_pred ee-c-cccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE----------------------EEEcCCCCCCeEE
Q psy6127 433 LS-G-VLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKV----------------------CVLDGDHPSAVQS 488 (515)
Q Consensus 433 ~~-~-~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~----------------------~~~~~~h~~~V~~ 488 (515)
+. + |. ..|.+++|+|+|++|++++.|++|++||+..+... ..+...+..+...
T Consensus 234 ~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
T 3vu4_A 234 FRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK 310 (355)
T ss_dssp EECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCE
T ss_pred EEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceE
Confidence 87 3 33 45999999999999999999999999999765311 1111112233467
Q ss_pred EEECCCCCEEEEeeCC--EEEEcCCC
Q psy6127 489 LQFNPKYHMLASACSN--MAFWIPTL 512 (515)
Q Consensus 489 l~~sp~~~~las~~~d--v~iW~~~~ 512 (515)
++|+|++..+++++.+ +++|++..
T Consensus 311 ~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 311 IAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 9999999999999765 78887654
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=288.30 Aligned_cols=267 Identities=13% Similarity=0.123 Sum_probs=213.1
Q ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCC
Q psy6127 218 RENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDN 297 (515)
Q Consensus 218 ~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~ 297 (515)
+.-...|.+++|+|||+++||++.|++|+ |.+.++ .+.+|...|.+++|+|+| .++.+.+|+.+
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~-- 75 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE---------FENKLDFELAQ-- 75 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC---------CCCTTTTSCCC--
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC---------CcceEEEEeCC--
Confidence 45568999999999999999999999999 755554 457999999999999998 26666555543
Q ss_pred eeeEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCC-----CeeEEEECCCCCEEEEEECCCc
Q psy6127 298 KYVRYFP-GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSG-----NKPIAAYDPEGLAFAIGVNSDS 371 (515)
Q Consensus 298 ~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~s~~~~~l~~g~~dg~ 371 (515)
....+. .|...|.+++|+|+|+.|++++.||.|++||... .+..+.++. .+.+++|||+|++|++|+.||+
T Consensus 76 -~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 76 -QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp -SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred -CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 222333 5688999999999999999999999999999544 555555222 3899999999999999999999
Q ss_pred EEEEEeecCCCCC-----ceeeec-CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce---eEEeeccccCCCC
Q psy6127 372 IKLYDVRSYDKGP-----FASFKC-PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNC---VQSLSGVLNNNAS 442 (515)
Q Consensus 372 i~i~d~~~~~~~~-----~~~~~~-~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~ 442 (515)
|++||+..+.... ...+.. ..+|...|.+++|+|+| +++++.|++|++||+..+.. ..++.. .+...
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~--~h~~~ 228 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN--ASRRK 228 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC--CCSSC
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc--cccCc
Confidence 9999998753211 122211 24577899999999999 88899999999999988773 234532 23345
Q ss_pred CEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEE--CCCCCEEEEeeCCE-EEEcCC
Q psy6127 443 PLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQF--NPKYHMLASACSNM-AFWIPT 511 (515)
Q Consensus 443 i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~las~~~dv-~iW~~~ 511 (515)
|.+++|+ |+.||+++ +++|++||+.+++......+ |.+.|++++| +|++..+++++.+. ++|..+
T Consensus 229 V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g-h~~~V~~va~~~s~d~~~La~a~edG~klw~~d 296 (588)
T 2j04_A 229 ITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG-SLENFHIIPLNHEKESTILLMSNKTSYKVLLED 296 (588)
T ss_dssp CCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS-CCSCCCEEEETTCSSCEEEEECSSCEEEEEESS
T ss_pred EEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC-CCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec
Confidence 9999999 68999987 69999999998888554546 9999999999 99999999998665 599864
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.9e-33 Score=267.67 Aligned_cols=261 Identities=17% Similarity=0.237 Sum_probs=217.4
Q ss_pred CcEEEEccceeeeeEeeeec--cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCC
Q psy6127 198 RTITKCSENLVRSYRVAKVF--RENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSK 275 (515)
Q Consensus 198 ~~~i~~wd~~~~~~~~~~~~--~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 275 (515)
|+.|++|| ..++++++++ .+|...|++++|+|++++||+|+.||+|++||+++++.+..+.+|...+.++.+. +
T Consensus 44 D~tV~iWd--~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~ 119 (318)
T 4ggc_A 44 DNSVYLWS--ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--S 119 (318)
T ss_dssp TTEEEEEE--TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--T
T ss_pred CCEEEEEE--CCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--C
Confidence 67899999 7778877765 4788899999999999999999999999999999999999999999888776655 4
Q ss_pred CeEEEEEeeCCCeEEEEECCCC-eeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeE-----EEEecCC
Q psy6127 276 TTAIHASTKVDATLRYLSLHDN-KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNV-----GMIQLSG 349 (515)
Q Consensus 276 ~~l~~~s~~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~ 349 (515)
..++ +++.++.+++|+.... ..+..+.+|...+..+.+.++++++++++.|++|++||+++++.. ....+..
T Consensus 120 ~~l~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 120 YILS--SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197 (318)
T ss_dssp TEEE--EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS
T ss_pred CEEE--EEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCC
Confidence 4444 4458999999998775 456778899999999999999999999999999999999887532 2224455
Q ss_pred CeeEEEECCCCCEE---EEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE--CCCcEEEEEC
Q psy6127 350 NKPIAAYDPEGLAF---AIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST--NGSIIRLFDA 424 (515)
Q Consensus 350 ~~~~~~~s~~~~~l---~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s--~dg~i~iwd~ 424 (515)
.+..+.++|++..+ ++++.+++|++||.+... ... ...+...+..+.|+|+++.+++++ .|+.|++||+
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-----~~~-~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~ 271 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----CLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 271 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-----EEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-----ccc-cccceeeeeeeeecccccceEEEEEcCCCEEEEEEC
Confidence 68889999976543 355678999999987754 211 123456788999999999888765 7899999999
Q ss_pred CCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q psy6127 425 FNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGY 473 (515)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~ 473 (515)
++++++..+.+|.. .|++++|+|+|++|++|+.||+|+|||+.+..
T Consensus 272 ~~~~~~~~l~gH~~---~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 272 PTMAKVAELKGHTS---RVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTCCEEEEECCCSS---CEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCCcEEEEEcCCCC---CEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99999999987654 49999999999999999999999999997653
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-33 Score=277.29 Aligned_cols=262 Identities=14% Similarity=0.150 Sum_probs=217.9
Q ss_pred ccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceee--eeEeeeeccccCCcEEEEEEcCC--CCEEE
Q psy6127 162 LHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVR--SYRVAKVFRENTDKINSLDYSSD--GSLLI 237 (515)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~--~~~~~~~~~~h~~~I~~l~~spd--~~~la 237 (515)
|+.+.++.+|...|.++.+.+... +.++++.++.+++|+ +. ..++...+.+|.+.|++++|+|+ +++|+
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~-----~l~~~~~dg~i~iw~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGK-----RLATCSSDKTIKIFE--VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSS-----EEEEEETTSCEEEEE--EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred CCccEEecCCcccEEEEEEcCCCC-----EEEEEECCCcEEEEe--cCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEE
Confidence 345667888988888888876543 233677788999999 66 88889999999999999999987 99999
Q ss_pred EEeCCCeEEEEECCCCe--eeeEecCCCCceeEEEEecC--CCeEEEEEeeCCCeEEEEECCCCe--eeEEecCCCCCeE
Q psy6127 238 SCSDDDQIIIYDCEQGT--SKNTINSKKYGVDLIKFTHS--KTTAIHASTKVDATLRYLSLHDNK--YVRYFPGHVRKVS 311 (515)
Q Consensus 238 sgs~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~~~d~~v~vwd~~~~~--~~~~~~~h~~~v~ 311 (515)
+|+.||.|++||+.+++ ....+..|...|.+++|+|+ +..+++++ .|+.|++||+.++. ....+.+|...|.
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 151 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVN 151 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec--CCCcEEEEecCCCCceeeEEecCCCCceE
Confidence 99999999999999987 77888899999999999999 77776664 79999999998873 4456678999999
Q ss_pred EEEEcC-------------CCCEEEEEeCCCcEEEEEcCCCCeE----EEE-ecCCCeeEEEECCC---CCEEEEEECCC
Q psy6127 312 SLNLSP-------------VDDSFISGSYDKTVRVWDLRQPNNV----GMI-QLSGNKPIAAYDPE---GLAFAIGVNSD 370 (515)
Q Consensus 312 ~l~~~~-------------~~~~l~s~s~dg~i~iwd~~~~~~~----~~~-~~~~~~~~~~~s~~---~~~l~~g~~dg 370 (515)
+++|+| +++.+++++.|+.|++||++++... ..+ .+...+.+++|+|+ ++++++++.||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg 231 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence 999999 6899999999999999999877543 233 34567999999999 89999999999
Q ss_pred cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEE
Q psy6127 371 SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQS 432 (515)
Q Consensus 371 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~ 432 (515)
.|++||++...............+...+.+++|+|++++|++++.||.|++|++..+.....
T Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 293 (379)
T 3jrp_A 232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP 293 (379)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEE
T ss_pred EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccc
Confidence 99999999865443344444556788999999999999999999999999999986544433
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=296.54 Aligned_cols=299 Identities=8% Similarity=0.081 Sum_probs=236.4
Q ss_pred hheeecccccccccccCCCCcCCCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE
Q psy6127 133 KIVAKSENMCNLTKLDLPYNKLGSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR 212 (515)
Q Consensus 133 ~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~ 212 (515)
+++|+++.+++| + | ++...++++|...+..++|.|.. ..+.|+ +..++
T Consensus 28 ~~iASas~D~TV----------~--d---~~~~~~l~gh~~~v~~V~FsPdg---------------~~~~~~--~~~~~ 75 (588)
T 2j04_A 28 TLYLTTFPDISI----------G--Q---PKYAKDINCNSKNLFHVKEFPLE---------------FENKLD--FELAQ 75 (588)
T ss_dssp CEEEECSSSEEE----------E--E---ECCCSCCSSBGGGTEEEEEECCC---------------CCCTTT--TSCCC
T ss_pred CEEEEEcCCcee----------e--c---ccccceecCCCccEEEEEECCCC---------------CcceEE--EEeCC
Confidence 788999999988 6 4 55555667887767777775542 233344 33334
Q ss_pred eeeecc-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCC-----ceeEEEEecCCCeEEEEEeeCC
Q psy6127 213 VAKVFR-ENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKY-----GVDLIKFTHSKTTAIHASTKVD 286 (515)
Q Consensus 213 ~~~~~~-~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~s~~~d 286 (515)
....+. +|...|.+++|||||++||+++.||+|++||.+. .+..+. |.. .+.+++|+|+|+.+++++ .|
T Consensus 76 ~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs--~D 150 (588)
T 2j04_A 76 QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN--ED 150 (588)
T ss_dssp SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE--TT
T ss_pred CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc--CC
Confidence 334444 6689999999999999999999999999999654 666666 655 599999999999988776 79
Q ss_pred CeEEEEECCCCee-------eEEe----cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCe---EEEE--ecCCC
Q psy6127 287 ATLRYLSLHDNKY-------VRYF----PGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN---VGMI--QLSGN 350 (515)
Q Consensus 287 ~~v~vwd~~~~~~-------~~~~----~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~--~~~~~ 350 (515)
|+|++||+.++.. +.++ .+|.+.|.+++|+|+| +++++.|++|++||+.+++. ...+ .+...
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 9999999998752 5665 6788999999999999 88999999999999988874 3445 24456
Q ss_pred eeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEE--cCCCCEEEEEECCCcEEEEECCCCc
Q psy6127 351 KPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKF--SPDGKLILVSTNGSIIRLFDAFNGN 428 (515)
Q Consensus 351 ~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~--sp~~~~l~~~s~dg~i~iwd~~~~~ 428 (515)
+..++|+ |+.+++++ +++|++||+.... ......+|...+..++| +|++..++++++||+ ++|...
T Consensus 229 V~svaFs--g~~LASa~-~~tIkLWd~~~~~-----~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d--- 296 (588)
T 2j04_A 229 ITDLKIV--DYKVVLTC-PGYVHKIDLKNYS-----ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED--- 296 (588)
T ss_dssp CCCEEEE--TTEEEEEC-SSEEEEEETTTTE-----EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---
T ss_pred EEEEEEE--CCEEEEEe-CCeEEEEECCCCe-----EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---
Confidence 9999999 68898886 6999999998754 21223368889999999 999999999999999 999976
Q ss_pred eeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeC
Q psy6127 429 CVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS 503 (515)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~ 503 (515)
.++++||+..+++. |+++++|+...+. +..+. +...|++++|+|||+.+|+++.
T Consensus 297 ----------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~--~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ----------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYE--TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ----------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSC--CEEEEEEEEECTTSSEEEEEEE
T ss_pred ----------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeec--cceEEEEEEECCCCCEEEEEEe
Confidence 15599999888775 9999999986554 33333 4567999999999999999873
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=282.40 Aligned_cols=281 Identities=14% Similarity=0.239 Sum_probs=220.6
Q ss_pred eeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE-----------eeeeccccC------------CcEEEEEE
Q psy6127 173 FVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR-----------VAKVFRENT------------DKINSLDY 229 (515)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~-----------~~~~~~~h~------------~~I~~l~~ 229 (515)
..|.++.|.+... +.++++.|+.+++|+ +...+ +...+.+|. +.|++++|
T Consensus 29 ~~V~~v~~s~~g~-----~la~g~~dg~v~iw~--~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~ 101 (447)
T 3dw8_B 29 DIISTVEFNHSGE-----LLATGDKGGRVVIFQ--QEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW 101 (447)
T ss_dssp GSEEEEEECSSSS-----EEEEEETTSEEEEEE--ECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred CcEEEEEECCCCC-----EEEEEcCCCeEEEEE--ecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence 3577777776432 334778889999998 55444 688899998 88999999
Q ss_pred cCCC--CEEEEEeCCCeEEEEECCCCeee---------------------------------------eE-ecCCCCcee
Q psy6127 230 SSDG--SLLISCSDDDQIIIYDCEQGTSK---------------------------------------NT-INSKKYGVD 267 (515)
Q Consensus 230 spd~--~~lasgs~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~ 267 (515)
+|++ .+|++++.|++|++||+.+++.. .. ..+|...|.
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 9998 79999999999999998764432 12 367999999
Q ss_pred EEEEecCCCeEEEEEeeCCCeEEEEECCC-CeeeE-------EecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCC
Q psy6127 268 LIKFTHSKTTAIHASTKVDATLRYLSLHD-NKYVR-------YFPGHVRKVSSLNLSPVD-DSFISGSYDKTVRVWDLRQ 338 (515)
Q Consensus 268 ~~~~~~~~~~l~~~s~~~d~~v~vwd~~~-~~~~~-------~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~ 338 (515)
+++|+|+++.++++ .|+.|++||+++ ++... .+.+|...|.+++|+|++ ++|++|+.||.|++||+++
T Consensus 182 ~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 182 SISINSDYETYLSA---DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp EEEECTTSSEEEEE---CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred EEEEcCCCCEEEEe---CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 99999999877653 499999999984 44444 356899999999999998 8999999999999999999
Q ss_pred CCe----EEEEecCC-------------CeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCc-----
Q psy6127 339 PNN----VGMIQLSG-------------NKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGC----- 396 (515)
Q Consensus 339 ~~~----~~~~~~~~-------------~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----- 396 (515)
++. ...+..+. .+.+++|+|++++|++++. +.|++||++.... ....+. .|..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~-~~~~~~---~~~~~~~~l 333 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR-PVETYQ---VHEYLRSKL 333 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS-CSCCEE---SCGGGTTTH
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc-ccceee---ccccccccc
Confidence 886 56665443 6999999999999999999 9999999986221 111222 2221
Q ss_pred ----------CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccc-----------------------------
Q psy6127 397 ----------EWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVL----------------------------- 437 (515)
Q Consensus 397 ----------~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----------------------------- 437 (515)
.+..++|+|++++|++++.||.|++||+.+++.+. +..+.
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDS 412 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccc
Confidence 12349999999999999999999999999987753 22221
Q ss_pred -cCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 438 -NNNASPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 438 -~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
.....+..++|+|++++||+++.++ +++|.-+
T Consensus 413 ~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 413 LDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 2234588999999999999998776 8888643
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=7.4e-32 Score=268.78 Aligned_cols=277 Identities=15% Similarity=0.164 Sum_probs=234.2
Q ss_pred eeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeeEecCCCCceeEE
Q psy6127 191 LAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLL-ISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLI 269 (515)
Q Consensus 191 l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~l-asgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 269 (515)
+.++++.++.+++|| ...+++...+.+|.. +.+++|+|+++++ ++++.|++|++||..+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d--~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVID--VTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEE--TTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEE--CCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 344778889999999 777888888888765 8999999999977 677789999999999999998888765 89999
Q ss_pred EEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCeEEEEecC
Q psy6127 270 KFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSF-ISGSYDKTVRVWDLRQPNNVGMIQLS 348 (515)
Q Consensus 270 ~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~ 348 (515)
+|+|+++.++++. +.++.|++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++||+++++....+..+
T Consensus 80 ~~spdg~~l~~~~-~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 157 (391)
T 1l0q_A 80 AVSPDGKQVYVTN-MASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157 (391)
T ss_dssp EECTTSSEEEEEE-TTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred EECCCCCEEEEEE-CCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence 9999999887665 46899999999999998888754 568999999999977 68888999999999999999888877
Q ss_pred CCeeEEEECCCCCEE-EEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE---CCCcEEEEEC
Q psy6127 349 GNKPIAAYDPEGLAF-AIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST---NGSIIRLFDA 424 (515)
Q Consensus 349 ~~~~~~~~s~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s---~dg~i~iwd~ 424 (515)
..+..++|+|+++.+ ++++.++.|++||+++.+ ..... .+...+.+++|+|+++++++++ .++.|++||+
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-----VIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-----EEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 778999999999987 566788999999998753 22221 2345678999999999999888 6899999999
Q ss_pred CCCceeEEeeccccCCCCCEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEcCCCCC
Q psy6127 425 FNGNCVQSLSGVLNNNASPLEATFTPDSQFV-ASGSTDGQVHIWNAERGYKVCVLDGDHPS 484 (515)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 484 (515)
.+++.+..+..+. .+.+++|+|+|+++ ++++.|+.|++||+.+++.+..+.. |..
T Consensus 232 ~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~-~~~ 287 (391)
T 1l0q_A 232 GTNKITARIPVGP----DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV-GKN 287 (391)
T ss_dssp TTTEEEEEEECCS----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSS
T ss_pred CCCeEEEEEecCC----CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC-CcC
Confidence 9999888877643 27899999999977 5668899999999999999988875 443
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-32 Score=268.55 Aligned_cols=283 Identities=12% Similarity=0.088 Sum_probs=229.2
Q ss_pred ccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeE---eeeeccccCCcEEEEEEcCCCC-EEEEEeCCC
Q psy6127 168 LESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYR---VAKVFRENTDKINSLDYSSDGS-LLISCSDDD 243 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~---~~~~~~~h~~~I~~l~~spd~~-~lasgs~dg 243 (515)
..+|...+.++.+.+... +.++++.++.+++|+ +...+ ....+.+|...|++++|+|+++ +|++|+.||
T Consensus 7 ~~~h~~~v~~~~~s~~~~-----~l~~~~~d~~v~iw~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKS-----LLLITSWDGSLTVYK--FDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp SSCCSSCEEEEEEEGGGT-----EEEEEETTSEEEEEE--EETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred ccCCCCcEEEEEEcCCCC-----EEEEEcCCCeEEEEE--eCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence 456766788888877543 234667889999998 55544 3455669999999999999999 999999999
Q ss_pred eEEEEEC-CCCeeeeEecC--CCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC---------CeeeEEecCCCCCeE
Q psy6127 244 QIIIYDC-EQGTSKNTINS--KKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD---------NKYVRYFPGHVRKVS 311 (515)
Q Consensus 244 ~i~iwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~---------~~~~~~~~~h~~~v~ 311 (515)
.|++||+ .+++. ..+.. |...|.+++|+| +..+++++ .|+.|++||+++ ++++..+. |...|.
T Consensus 80 ~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~ 154 (342)
T 1yfq_A 80 EILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAAS--WDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIF 154 (342)
T ss_dssp CEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEE--TTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEE
T ss_pred eEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEc--CCCeEEEEcccccccccccccCCeeeEEe-eCCceE
Confidence 9999999 76654 77788 999999999999 77776554 799999999988 77777776 899999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCC-CCeE---EEEecCCCeeEEEECC-CCCEEEEEECCCcEEEEEeecC--C--C
Q psy6127 312 SLNLSPVDDSFISGSYDKTVRVWDLRQ-PNNV---GMIQLSGNKPIAAYDP-EGLAFAIGVNSDSIKLYDVRSY--D--K 382 (515)
Q Consensus 312 ~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~---~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~--~--~ 382 (515)
+++|+|++ +++++.|+.|++||+++ +... ....+...+.+++|+| +++++++++.||.+++|+++.. . .
T Consensus 155 ~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 155 TMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred EEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 99999877 99999999999999998 5432 2234556799999999 9999999999999999999875 1 1
Q ss_pred CCceeeecCC------CCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEE
Q psy6127 383 GPFASFKCPG------ERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVA 456 (515)
Q Consensus 383 ~~~~~~~~~~------~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 456 (515)
.....+.... .+...|.+++|+|++++|++++.||.|++||+.+++.+..+..+. ...|.+++ |++++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h--~~~v~~~~--~~~~~l~ 308 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIA--CSDNILC 308 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEE--ECSSEEE
T ss_pred ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc--CCCceEec--CCCCeEE
Confidence 2222332211 234589999999999999999999999999999999988887651 33488888 9999999
Q ss_pred EEeCCCc-EEEEE
Q psy6127 457 SGSTDGQ-VHIWN 468 (515)
Q Consensus 457 sgs~dg~-I~iwd 468 (515)
+++.||. .+.|.
T Consensus 309 s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 309 LATSDDTFKTNAA 321 (342)
T ss_dssp EEEECTHHHHCSS
T ss_pred EEecCCccccccc
Confidence 9999998 55554
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=272.47 Aligned_cols=261 Identities=11% Similarity=0.106 Sum_probs=201.3
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC---------CCe
Q psy6127 228 DYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH---------DNK 298 (515)
Q Consensus 228 ~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~---------~~~ 298 (515)
.+.++++++++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 455688899999999999999999998888776 466788888887 3445689999999665 455
Q ss_pred eeEEe-cCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCCeEEEE--ecCCCeeEEEECCCCCEEEEEECCCcEE
Q psy6127 299 YVRYF-PGHVRKVSSLNLSP--VDDSFISGSYDKTVRVWDLRQPNNVGMI--QLSGNKPIAAYDPEGLAFAIGVNSDSIK 373 (515)
Q Consensus 299 ~~~~~-~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 373 (515)
.+..+ .+|.+.|.+++|+| +++++++++.||+|++||+++++..... .+...+.+++|+|++.++++|+.||.|+
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 44444 36778999999999 9999999999999999999999987666 3334689999999999999999999999
Q ss_pred EEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCC--EEEEEecC
Q psy6127 374 LYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASP--LEATFTPD 451 (515)
Q Consensus 374 i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i--~~~~~sp~ 451 (515)
+||+++++... ......|..+|++++|+|++.+|++++. +.|++||+++++....+..+..+...+ .+++|+|+
T Consensus 196 iwd~~~~~~~~---~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 196 VYNLSSPDQAS---SRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp EEESSCTTSCC---EECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred EEECCCCCCCc---cEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence 99999865210 1222347889999999999999999994 599999999988776665433332223 36999999
Q ss_pred CCEEEEEeC-CCcEEEEECCCCeEEEEEcCCCCCCeEEEEECC---CCCEEEEeeCC
Q psy6127 452 SQFVASGST-DGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNP---KYHMLASACSN 504 (515)
Q Consensus 452 g~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp---~~~~las~~~d 504 (515)
|++|++++. |+.|++|++.++...... .++..++|.| +...+++++.+
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d 323 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGD 323 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEET
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecC
Confidence 999999998 999999999665432222 3456666666 66666665533
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=6.5e-32 Score=273.02 Aligned_cols=297 Identities=12% Similarity=0.107 Sum_probs=242.0
Q ss_pred EEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee-----EecCCCCceeEEEEecC
Q psy6127 200 ITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKN-----TINSKKYGVDLIKFTHS 274 (515)
Q Consensus 200 ~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~ 274 (515)
.+..++..-...+....+..+. .+.+++|+|++.++++++.|+.|++||+.+++... .+.+|...+.+++|+++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH 180 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred EEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence 5666652213346666666654 45699999988888888889999999999998877 34578889999999988
Q ss_pred CCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCCeEEEEecCCCeeE
Q psy6127 275 KTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFIS-GSYDKTVRVWDLRQPNNVGMIQLSGNKPI 353 (515)
Q Consensus 275 ~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 353 (515)
+..++++ +.|+.|++||+++++.+..+..|...+.+++|+|+++.+++ ++.|+.|++||+++++.+..+.....+..
T Consensus 181 ~~~~~s~--~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 258 (433)
T 3bws_A 181 NELWVSQ--MQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRG 258 (433)
T ss_dssp TEEEEEE--GGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEE
T ss_pred CEEEEEE--CCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceE
Confidence 8655443 57999999999999999999899999999999999998754 45799999999999998888877777899
Q ss_pred EEECCCCCEEEEEE--------CCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEE-EEEECCCcEEEEEC
Q psy6127 354 AAYDPEGLAFAIGV--------NSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLI-LVSTNGSIIRLFDA 424 (515)
Q Consensus 354 ~~~s~~~~~l~~g~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l-~~~s~dg~i~iwd~ 424 (515)
++|+|+++.+++++ .|+.|++||+++++ .... ..+...+.+++|+|+++++ ++++.++.|++||+
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-----~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-----LIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-----EEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-----EEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 99999999999988 48899999998753 1111 1233467899999999865 55578999999999
Q ss_pred CCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeC---------------CCcEEEEECCCCeEEEEEcCCCCCCeEEE
Q psy6127 425 FNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGST---------------DGQVHIWNAERGYKVCVLDGDHPSAVQSL 489 (515)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~---------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 489 (515)
.+++....+.. ...+.+++|+|+|+++++++. ||.|++||+.+++.+..+.. ...+.++
T Consensus 333 ~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~ 406 (433)
T 3bws_A 333 KEKKVQKSIPV----FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGL 406 (433)
T ss_dssp TTTEEEEEEEC----SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEE
T ss_pred CCCcEEEEecC----CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceE
Confidence 99988877752 233889999999999988876 57999999999999998875 4679999
Q ss_pred EECCCCCEEEEeeC---CEEEEcCC
Q psy6127 490 QFNPKYHMLASACS---NMAFWIPT 511 (515)
Q Consensus 490 ~~sp~~~~las~~~---dv~iW~~~ 511 (515)
+|+|+++++++++. .+++|+++
T Consensus 407 ~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 407 DVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEcCCCCEEEEEECCCCeEEEEEec
Confidence 99999999887753 39999976
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=268.93 Aligned_cols=305 Identities=13% Similarity=0.131 Sum_probs=237.6
Q ss_pred CCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeee-e-EeeeeccccCCcEEEEEEcCC
Q psy6127 155 GSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRS-Y-RVAKVFRENTDKINSLDYSSD 232 (515)
Q Consensus 155 ~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~-~-~~~~~~~~h~~~I~~l~~spd 232 (515)
..|+....+.+..+.+|...|.++.|.+..... .+.++++.++.+++|+ +.. . .....+.+|.+.|++++|+|+
T Consensus 22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g--~~l~~~~~dg~i~iw~--~~~~~~~~~~~~~~h~~~v~~~~~~~~ 97 (368)
T 3mmy_A 22 TTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPG--NFLIAGSWANDVRCWE--VQDSGQTIPKAQQMHTGPVLDVCWSDD 97 (368)
T ss_dssp -CCSSCTTCCEECSSCCSSCEEEEEECCTTSSS--EEEEEEETTSEEEEEE--ECTTSCEEEEEEEECSSCEEEEEECTT
T ss_pred ccCCCCCcceeEeccCCCCceEEEEEcCCCCCc--eEEEEECCCCcEEEEE--cCCCCceeEEEeccccCCEEEEEECcC
Confidence 456666777788889998888888888763000 0334778889999999 654 3 344788999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEE--ecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCe
Q psy6127 233 GSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKF--THSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKV 310 (515)
Q Consensus 233 ~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v 310 (515)
+++|++|+.||.|++||+.+++... +..|...|.+++| +|++..++++ +.|+.|++||+++++.+..+..|. .+
T Consensus 98 ~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~-~~ 173 (368)
T 3mmy_A 98 GSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTG--SWDKTLKFWDTRSSNPMMVLQLPE-RC 173 (368)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEE--ETTSEEEEECSSCSSCSEEEECSS-CE
T ss_pred CCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEc--cCCCcEEEEECCCCcEEEEEecCC-Cc
Confidence 9999999999999999999888766 5668999999999 6777656554 479999999999999998888664 57
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE---ecCCCeeEEEECCCCCE----EEEEECCCcEEEEEeecCCC-
Q psy6127 311 SSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI---QLSGNKPIAAYDPEGLA----FAIGVNSDSIKLYDVRSYDK- 382 (515)
Q Consensus 311 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~s~~~~~----l~~g~~dg~i~i~d~~~~~~- 382 (515)
.++.+. +..+++++.|+.+++||++........ .......++++.++... +++++.||.|++||++....
T Consensus 174 ~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 174 YCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp EEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred eEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 777776 458899999999999999887655443 22344566666655544 99999999999999987532
Q ss_pred CCceeeecCCCCCc------------CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEec
Q psy6127 383 GPFASFKCPGERGC------------EWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTP 450 (515)
Q Consensus 383 ~~~~~~~~~~~~~~------------~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp 450 (515)
.....+ ..|.. .|++++|+|++++|++++.||.|++||+.+++++..+..|. ..|.+++|+|
T Consensus 252 ~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~ 325 (368)
T 3mmy_A 252 KDNFTF---KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLD---QPISACCFNH 325 (368)
T ss_dssp HHSEEE---ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS---SCEEEEEECT
T ss_pred ccceee---eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCC---CCceEEEECC
Confidence 111111 22222 69999999999999999999999999999999988887654 4599999999
Q ss_pred CCCEEEEEeCCCcEEEE---ECCCCeEE
Q psy6127 451 DSQFVASGSTDGQVHIW---NAERGYKV 475 (515)
Q Consensus 451 ~g~~l~sgs~dg~I~iw---d~~~~~~~ 475 (515)
+|++|++++.|+..+.| +.+....+
T Consensus 326 ~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 326 NGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp TSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred CCCeEEEEecccccccccccCCCcccee
Confidence 99999999988755444 44444433
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=297.49 Aligned_cols=255 Identities=15% Similarity=0.198 Sum_probs=212.6
Q ss_pred eeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeeEecCCCCceeEEEEecC--CCeEEEEEeeCCCeE
Q psy6127 214 AKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCE--QGTSKNTINSKKYGVDLIKFTHS--KTTAIHASTKVDATL 289 (515)
Q Consensus 214 ~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~~~d~~v 289 (515)
..++.+|.+.|++++|+|++++|++|+.||+|++||+. +++....+.+|..+|.+++|+|+ ++.+++++ .||.|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s--~Dg~I 79 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDGKV 79 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE--TTSCE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe--CCCeE
Confidence 35688999999999999999999999999999999998 55778889999999999999988 77666554 79999
Q ss_pred EEEECCCCe--eeEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCe---EEEEecCCCeeEEEECC----
Q psy6127 290 RYLSLHDNK--YVRYFPGHVRKVSSLNLSPV--DDSFISGSYDKTVRVWDLRQPNN---VGMIQLSGNKPIAAYDP---- 358 (515)
Q Consensus 290 ~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~s~---- 358 (515)
++||+.+++ .+..+.+|...|.+++|+|+ ++.+++|+.||.|++||++++.. .....+...+.+++|+|
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 999999987 77888899999999999999 99999999999999999988733 23335566799999999
Q ss_pred ---------CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCC---CCEEEEEECCCcEEEEECCC
Q psy6127 359 ---------EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPD---GKLILVSTNGSIIRLFDAFN 426 (515)
Q Consensus 359 ---------~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~---~~~l~~~s~dg~i~iwd~~~ 426 (515)
++..+++|+.||.|++||++..... .........|...|++++|+|+ ++++++++.||.|++||+.+
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCccc-ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 5899999999999999999975421 1233344578889999999999 89999999999999999988
Q ss_pred Ccee--EEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy6127 427 GNCV--QSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAER 471 (515)
Q Consensus 427 ~~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~ 471 (515)
++.. ........+...+.+++|+|+|+++++|+.||.|++|++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 6421 22222333556699999999999999999999999999874
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.8e-32 Score=262.48 Aligned_cols=294 Identities=13% Similarity=0.146 Sum_probs=214.5
Q ss_pred cccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeee----EeeeeccccCCcEEEEEEcC--CCCEEEEEe
Q psy6127 167 SLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSY----RVAKVFRENTDKINSLDYSS--DGSLLISCS 240 (515)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~----~~~~~~~~h~~~I~~l~~sp--d~~~lasgs 240 (515)
.+.+|...|.++.|.+... +.++++.|+.+++|+ +... ++...+.+|...|++++|+| |+++|++|+
T Consensus 6 ~~~gH~~~v~~~~~~~~~~-----~l~~~~~dg~i~iw~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR-----HVATCSSDQHIKVFK--LDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp EECCCSSCEEEEEECSSSS-----EEEEEETTSEEEEEE--ECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred cCcccccceeEEEEcCCCC-----EEEEeeCCCeEEEEE--CCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence 3467877788888877543 334677889999998 4433 67788899999999999999 699999999
Q ss_pred CCCeEEEEECCCC---------eeeeEecCCCCceeEEEEecC--CCeEEEEEeeCCCeEEEEECCCCeeeEEec-----
Q psy6127 241 DDDQIIIYDCEQG---------TSKNTINSKKYGVDLIKFTHS--KTTAIHASTKVDATLRYLSLHDNKYVRYFP----- 304 (515)
Q Consensus 241 ~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~----- 304 (515)
.||.|++||+.++ +....+..|...|.+++|+|+ +..+++++ .|+.|++||+++++.+..+.
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~ 156 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG--NDGILRLYDALEPSDLRSWTLTSEM 156 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec--CCCcEEEecCCChHHhccccccccc
Confidence 9999999999887 567888999999999999999 87777654 79999999998876544332
Q ss_pred --------CCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCCe--EEEE-ecCCCeeEEEECCCC----CEEEEE
Q psy6127 305 --------GHVRKVSSLNLSPV---DDSFISGSYDKTVRVWDLRQPNN--VGMI-QLSGNKPIAAYDPEG----LAFAIG 366 (515)
Q Consensus 305 --------~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~~--~~~~-~~~~~~~~~~~s~~~----~~l~~g 366 (515)
+|...+.+++|+|+ +..+++++.|+.+.+|+...++. ...+ .+...+.+++|+|++ ++|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEE
Confidence 68889999999997 88999999999998888887775 3333 345679999999998 899999
Q ss_pred ECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE----CCCcEEEEECCCCceeEEeeccccCCCC
Q psy6127 367 VNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST----NGSIIRLFDAFNGNCVQSLSGVLNNNAS 442 (515)
Q Consensus 367 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 442 (515)
+.||.|++||++...... ..............++....+..+. ....+.+|+....+.+..+.+| ...
T Consensus 237 ~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~ 308 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPL-----ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH---NGE 308 (351)
T ss_dssp ETTSCEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTT---SSC
T ss_pred cCCCeEEEEeCCCCcCcc-----ccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc---ccc
Confidence 999999999999754211 1111222222333444443433332 3345566666566666666654 445
Q ss_pred CEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy6127 443 PLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCV 477 (515)
Q Consensus 443 i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~ 477 (515)
|++++|+|++++|++|+.||.|++||+.+++....
T Consensus 309 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 99999999999999999999999999998754443
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.1e-30 Score=260.20 Aligned_cols=335 Identities=10% Similarity=0.096 Sum_probs=257.6
Q ss_pred heeecccccccccccCCCCcCCCcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEe
Q psy6127 134 IVAKSENMCNLTKLDLPYNKLGSWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRV 213 (515)
Q Consensus 134 ~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~ 213 (515)
+++++..++.| ++||..+++.+..+.+|.. +.++.+.+.... +.++++.++.+++|| ...+++
T Consensus 4 l~vs~~~d~~v----------~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~----l~~~~~~d~~i~v~d--~~~~~~ 66 (391)
T 1l0q_A 4 AYIANSESDNI----------SVIDVTSNKVTATIPVGSN-PMGAVISPDGTK----VYVANAHSNDVSIID--TATNNV 66 (391)
T ss_dssp EEEEETTTTEE----------EEEETTTTEEEEEEECSSS-EEEEEECTTSSE----EEEEEGGGTEEEEEE--TTTTEE
T ss_pred EEEEcCCCCEE----------EEEECCCCeEEEEeecCCC-cceEEECCCCCE----EEEECCCCCeEEEEE--CCCCeE
Confidence 46677888888 9999999999998888754 455555544321 334666778899999 677888
Q ss_pred eeeccccCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEE
Q psy6127 214 AKVFRENTDKINSLDYSSDGSLLISCS-DDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYL 292 (515)
Q Consensus 214 ~~~~~~h~~~I~~l~~spd~~~lasgs-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vw 292 (515)
...+..|. .+.+++|+|++++|+.++ .|+.|++||+.+++....+..+ ..+.+++|+|+++.++++. +.++.|++|
T Consensus 67 ~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~-~~~~~v~~~ 143 (391)
T 1l0q_A 67 IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTN-NGDKTVSVI 143 (391)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEE-TTTTEEEEE
T ss_pred EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEe-CCCCEEEEE
Confidence 88887766 899999999999886554 6799999999999988888765 4689999999999876554 579999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEE---C
Q psy6127 293 SLHDNKYVRYFPGHVRKVSSLNLSPVDDSF-ISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGV---N 368 (515)
Q Consensus 293 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~ 368 (515)
|+.+++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++||+++++....+.....+..++|+|+++++++++ .
T Consensus 144 d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 222 (391)
T 1l0q_A 144 NTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY 222 (391)
T ss_dssp ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSS
T ss_pred ECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcC
Confidence 99999998888765 457999999999977 677789999999999999888888777789999999999999888 6
Q ss_pred CCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCceeEEeeccccCCCCC----
Q psy6127 369 SDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLI-LVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASP---- 443 (515)
Q Consensus 369 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i---- 443 (515)
++.|++||+++++ .......+ ..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+.......
T Consensus 223 ~~~v~~~d~~~~~-----~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 296 (391)
T 1l0q_A 223 FNTVSMIDTGTNK-----ITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIG 296 (391)
T ss_dssp CCEEEEEETTTTE-----EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEE
T ss_pred CCcEEEEECCCCe-----EEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeee
Confidence 8999999998753 22222222 346799999999988 566789999999999999888876543321101
Q ss_pred --------EEEEEecCC----------CEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee
Q psy6127 444 --------LEATFTPDS----------QFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC 502 (515)
Q Consensus 444 --------~~~~~sp~g----------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~ 502 (515)
....|+.+. ..+...+.|...++|++.+|... . +..+ ...|+|+|.+.++..
T Consensus 297 ~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~-~~~~--~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 297 SIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----K-KQNP--THTYSETGIYTVRLT 366 (391)
T ss_dssp ECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----C-SSSC--EECCSSCEEEEEEEE
T ss_pred cccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc----C-cCCC--eEEeCCCceEEEEEE
Confidence 112233221 23555567889999999888752 1 3333 367899998877643
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=8.6e-31 Score=264.78 Aligned_cols=289 Identities=12% Similarity=0.162 Sum_probs=235.5
Q ss_pred cccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeee-----eccccCCcEEEEEEcCCCCEEE
Q psy6127 163 HSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAK-----VFRENTDKINSLDYSSDGSLLI 237 (515)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~-----~~~~h~~~I~~l~~spd~~~la 237 (515)
+.+..+..+... .++.+.+.. .+.++++.++.+.+|| ...++... .+.+|.+.|.+++|+|++++++
T Consensus 114 ~~~~~~~~~~~~-~~~~~s~~~-----~~~~~~~~~~~i~~~d--~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 185 (433)
T 3bws_A 114 RFISRFKTGFQP-KSVRFIDNT-----RLAIPLLEDEGMDVLD--INSGQTVRLSPPEKYKKKLGFVETISIPEHNELWV 185 (433)
T ss_dssp EEEEEEECSSCB-CCCEESSSS-----EEEEEBTTSSSEEEEE--TTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEE
T ss_pred eEEEEEcCCCCc-eEEEEeCCC-----eEEEEeCCCCeEEEEE--CCCCeEeeecCcccccccCCceeEEEEcCCCEEEE
Confidence 555556555432 234444311 1445677778899998 66666665 5678999999999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcC
Q psy6127 238 SCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSP 317 (515)
Q Consensus 238 sgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 317 (515)
+++.|+.|++||+.+++....+..|...+.+++|+|+++.+++++ +.++.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus 186 s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~ 263 (433)
T 3bws_A 186 SQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN-WISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSK 263 (433)
T ss_dssp EEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE-TTTTEEEEEETTTTEEEEECCCC-SEEEEEEECT
T ss_pred EECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe-cCCCcEEEEECCCCcEEEEecCC-CCceEEEEcC
Confidence 999999999999999999999999999999999999999877665 47999999999999998888754 4599999999
Q ss_pred CCCEEEEEe--------CCCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEE-EEEECCCcEEEEEeecCCCCCceee
Q psy6127 318 VDDSFISGS--------YDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAF-AIGVNSDSIKLYDVRSYDKGPFASF 388 (515)
Q Consensus 318 ~~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~ 388 (515)
+++.+++++ .|+.|++||+++++....+.+...+..++|+|+++.+ ++++.++.+++||+++++ ..
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-----~~ 338 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-----VQ 338 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-----EE
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-----EE
Confidence 999999888 5889999999999888887666678899999999755 556889999999998643 22
Q ss_pred ecCCCCCcCeEEEEEcCCCCEEEEEEC---------------CCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCC
Q psy6127 389 KCPGERGCEWTGLKFSPDGKLILVSTN---------------GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQ 453 (515)
Q Consensus 389 ~~~~~~~~~i~~l~~sp~~~~l~~~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 453 (515)
... .+...+.+++|+|+++++++++. ||.|++||..+++.+..+... ..+.+++|+|+|+
T Consensus 339 ~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~ 413 (433)
T 3bws_A 339 KSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG----NQPTGLDVSPDNR 413 (433)
T ss_dssp EEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS----SSEEEEEECTTSC
T ss_pred EEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC----CCCceEEEcCCCC
Confidence 111 24556889999999999998886 579999999999988887752 2389999999999
Q ss_pred EEEEEeC-CCcEEEEECCC
Q psy6127 454 FVASGST-DGQVHIWNAER 471 (515)
Q Consensus 454 ~l~sgs~-dg~I~iwd~~~ 471 (515)
+|++++. |+.|++|+++.
T Consensus 414 ~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 414 YLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEETTTTEEEEEEETT
T ss_pred EEEEEECCCCeEEEEEecC
Confidence 9988875 99999999863
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.1e-31 Score=265.47 Aligned_cols=248 Identities=15% Similarity=0.298 Sum_probs=203.8
Q ss_pred eEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC----------CeeeEEecCCCCCeEEEEEcCCCC-EEEEE
Q psy6127 257 NTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD----------NKYVRYFPGHVRKVSSLNLSPVDD-SFISG 325 (515)
Q Consensus 257 ~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~ 325 (515)
.....|.+.|++++|+|++..+++ +++.+|.|++||+.+ .+....+.+|...|.+++|+|+++ +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~la-t~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIA-TKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEE-EECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEE-EECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 445678899999999998544433 335799999999986 577788899999999999999998 99999
Q ss_pred eCCCcEEEEEcCCCCe-------EEEE-ecCCCeeEEEECC-CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCc
Q psy6127 326 SYDKTVRVWDLRQPNN-------VGMI-QLSGNKPIAAYDP-EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGC 396 (515)
Q Consensus 326 s~dg~i~iwd~~~~~~-------~~~~-~~~~~~~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 396 (515)
+.||.|++||+..+.. ...+ .+...+.+++|+| ++..+++++.||.|++||++...... .......|..
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~ 278 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK--PSHTVDAHTA 278 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS--CSEEEECCSS
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc--ceeEeecCCC
Confidence 9999999999987432 2333 4556799999999 78899999999999999999753111 1122236778
Q ss_pred CeEEEEEcCCCC-EEEEEECCCcEEEEECCC-CceeEEeeccccCCCCCEEEEEecCCC-EEEEEeCCCcEEEEECCC--
Q psy6127 397 EWTGLKFSPDGK-LILVSTNGSIIRLFDAFN-GNCVQSLSGVLNNNASPLEATFTPDSQ-FVASGSTDGQVHIWNAER-- 471 (515)
Q Consensus 397 ~i~~l~~sp~~~-~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~sgs~dg~I~iwd~~~-- 471 (515)
.|++++|+|++. ++++|+.||.|++||+++ +.++..+..|. ..|.+++|+|+++ ++++++.||.|++||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 899999999987 688999999999999998 55677777654 4499999999985 799999999999999977
Q ss_pred ------------CeEEEEEcCCCCCCeEEEEECCCCC-EEEEeeCC--EEEEcCC
Q psy6127 472 ------------GYKVCVLDGDHPSAVQSLQFNPKYH-MLASACSN--MAFWIPT 511 (515)
Q Consensus 472 ------------~~~~~~~~~~h~~~V~~l~~sp~~~-~las~~~d--v~iW~~~ 511 (515)
.+++..+.+ |...|++++|+|++. ++++++.+ +++|+++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGG-HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCC-CSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cccCccccccCCcceEEEcCC-CCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 367777777 999999999999999 88888755 9999975
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.7e-31 Score=266.80 Aligned_cols=249 Identities=13% Similarity=0.254 Sum_probs=207.8
Q ss_pred eeccccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCC----------CeeeeEecCCCCceeEEEEecCCC-eEEEEE
Q psy6127 215 KVFRENTDKINSLDYSSD-GSLLISCSDDDQIIIYDCEQ----------GTSKNTINSKKYGVDLIKFTHSKT-TAIHAS 282 (515)
Q Consensus 215 ~~~~~h~~~I~~l~~spd-~~~lasgs~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s 282 (515)
....+|.+.|++++|+|+ +.+||+++.||.|++||+.+ .+....+.+|...+.+++|+|++. .++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~- 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA- 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE-
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE-
Confidence 445689999999999997 78999999999999999986 677888999999999999999988 44433
Q ss_pred eeCCCeEEEEECCCCee-------eEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC---CeEEEE-ecCCC
Q psy6127 283 TKVDATLRYLSLHDNKY-------VRYFPGHVRKVSSLNLSP-VDDSFISGSYDKTVRVWDLRQP---NNVGMI-QLSGN 350 (515)
Q Consensus 283 ~~~d~~v~vwd~~~~~~-------~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~---~~~~~~-~~~~~ 350 (515)
+.||.|++||+.++.. ...+.+|...|.+++|+| ++..|++++.||.|++||++++ +....+ .+...
T Consensus 201 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 201 -SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp -CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred -eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 5799999999987422 456778999999999999 6779999999999999999987 455555 55667
Q ss_pred eeEEEECCCCC-EEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC-
Q psy6127 351 KPIAAYDPEGL-AFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGK-LILVSTNGSIIRLFDAFNG- 427 (515)
Q Consensus 351 ~~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~-~l~~~s~dg~i~iwd~~~~- 427 (515)
+.+++|+|++. .+++|+.||.|++||++.... .......|...|.+++|+|+++ ++++++.|+.|++||+...
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKL----KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 99999999987 688999999999999987432 2222345778999999999985 6899999999999999872
Q ss_pred -------------ceeEEeeccccCCCCCEEEEEecCCC-EEEEEeCCCcEEEEECCCC
Q psy6127 428 -------------NCVQSLSGVLNNNASPLEATFTPDSQ-FVASGSTDGQVHIWNAERG 472 (515)
Q Consensus 428 -------------~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~sgs~dg~I~iwd~~~~ 472 (515)
+.+..+. .+...|.+++|+|+++ ++++++.||.|++|++..+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHG---GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECC---CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcC---CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 3334443 3455599999999999 9999999999999998653
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=5.5e-31 Score=263.01 Aligned_cols=231 Identities=16% Similarity=0.159 Sum_probs=170.4
Q ss_pred EEEEeeCCCeEEEEECCCCeee-----EEecCCCCCeEEEEEcC--------CCCEEEEEeCCCcEEEEEcCCCCeEE-E
Q psy6127 279 IHASTKVDATLRYLSLHDNKYV-----RYFPGHVRKVSSLNLSP--------VDDSFISGSYDKTVRVWDLRQPNNVG-M 344 (515)
Q Consensus 279 ~~~s~~~d~~v~vwd~~~~~~~-----~~~~~h~~~v~~l~~~~--------~~~~l~s~s~dg~i~iwd~~~~~~~~-~ 344 (515)
++++++.|++|++||.++++.. ..+.+|.+.|++++|+| |+++|++|+.|++|++||++++.... .
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence 4455568999999999988653 34689999999999998 78899999999999999998876654 4
Q ss_pred EecCCCeeEEEECCCCC-EEEEEECCCcEEEEEeecCCCCCcee--------------------eecCCCCCcCeEEEEE
Q psy6127 345 IQLSGNKPIAAYDPEGL-AFAIGVNSDSIKLYDVRSYDKGPFAS--------------------FKCPGERGCEWTGLKF 403 (515)
Q Consensus 345 ~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~--------------------~~~~~~~~~~i~~l~~ 403 (515)
+.++..+.+++|+|++. +|++++.|++|++||+++++...... ......+...+.++.|
T Consensus 183 ~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~ 262 (393)
T 4gq1_A 183 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRW 262 (393)
T ss_dssp EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEE
T ss_pred cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeee
Confidence 57778899999999874 79999999999999998754211100 0112356667888988
Q ss_pred c-CCCCEEEEEECCCcEEEEECCCCceeEEeeccccCC---------------CCCEEEEEec--CCCEEEEEeCCCcEE
Q psy6127 404 S-PDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN---------------ASPLEATFTP--DSQFVASGSTDGQVH 465 (515)
Q Consensus 404 s-p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~i~~~~~sp--~g~~l~sgs~dg~I~ 465 (515)
+ |+++.+++++.|+++++||+..++....+..+.... .......|+| ++.++++|+.||.|+
T Consensus 263 ~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~ 342 (393)
T 4gq1_A 263 IGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQ 342 (393)
T ss_dssp ETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEE
T ss_pred ecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEE
Confidence 6 799999999999999999998877665554332210 1122234444 344677888999999
Q ss_pred EEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC-EEEEcC
Q psy6127 466 IWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN-MAFWIP 510 (515)
Q Consensus 466 iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d-v~iW~~ 510 (515)
+||+.++++...+.. |..+|++++|+|||++||+++.+ +.+|.+
T Consensus 343 lwd~~~~~~~~~~~~-~~~~V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 343 LINTYEKDSNSIPIQ-LGMPIVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp EEETTCTTCCEEEEE-CSSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred EEECCCCcEEEEecC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 999999988888777 88999999999999999999976 666654
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=4e-31 Score=250.32 Aligned_cols=263 Identities=12% Similarity=0.168 Sum_probs=190.4
Q ss_pred CCcchhhc---cccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcC
Q psy6127 155 GSWDFELL---HSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSS 231 (515)
Q Consensus 155 ~~wd~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~sp 231 (515)
++|+..++ +.++++.+|...|..+.|.+.. ..+ -|+..=.-|...|.+++|+|
T Consensus 66 ~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~-----------~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 66 SLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDV-------------YNL-----------VCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp EEEEESSSSBEEEEEEEECCSSCEEEECCCTTC-------------CSC-----------EEEEECSSSEEEEEEECC--
T ss_pred EEcccCCCccceeeEEEeccCceeEEEEEcCcc-------------cce-----------eeeeeccccccceEEEEECC
Confidence 88999998 7888999887777776665432 111 11122223567899999999
Q ss_pred C----CCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEEC-CCCeeeEEecCC
Q psy6127 232 D----GSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL-HDNKYVRYFPGH 306 (515)
Q Consensus 232 d----~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~-~~~~~~~~~~~h 306 (515)
| ++++++++. .+++|++.+++.+.+ ...+.|+.|++|++ .+++.+..+.+|
T Consensus 122 d~~~~~~~l~s~g~--~~~v~~l~~g~lv~s----------------------s~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 122 DDESEKQVLLKSGN--IKAVLGLTKRRLVSS----------------------SGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp ----CCEEEEEEEE--EEEEEEETTTEEEEE----------------------ESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred CccccccEEEeCCC--eEEEEecCCCcEEEe----------------------cccCCCCcEEEEEECCCCceeeeeccC
Confidence 9 999999884 478887654443322 11124778888887 447777777889
Q ss_pred CCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCCeEEEEecC----CCeeEEEECCCCCEE------------EEEE
Q psy6127 307 VRKVSSLNLSP---VDDSFISGSYDKTVRVWDLRQPNNVGMIQLS----GNKPIAAYDPEGLAF------------AIGV 367 (515)
Q Consensus 307 ~~~v~~l~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~s~~~~~l------------~~g~ 367 (515)
...++.++|+| ++..|++|+.|++|++||+++++++.++..+ ..+.+++|+|+|.++ ++|+
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999999 7799999999999999999999999998532 235677999999886 5678
Q ss_pred CCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEE
Q psy6127 368 NSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEAT 447 (515)
Q Consensus 368 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~ 447 (515)
.|+++++||..++..........+.+|...+.+..+ ++.++++++.|++|++||+.+++++.++.+|.... +..++
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~v--vs~va 333 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQH--WSFVK 333 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CC--CCEEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCe--EEEEE
Confidence 899999999887542111111113344444444444 37799999999999999999999999998765431 44689
Q ss_pred EecCCCEEEEEeCCCcEEEEEC
Q psy6127 448 FTPDSQFVASGSTDGQVHIWNA 469 (515)
Q Consensus 448 ~sp~g~~l~sgs~dg~I~iwd~ 469 (515)
|+|||++|++|+.|++|+|||+
T Consensus 334 fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999995
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3e-31 Score=286.73 Aligned_cols=255 Identities=15% Similarity=0.158 Sum_probs=212.2
Q ss_pred ccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceee--eeEeeeeccccCCcEEEEEEcCC--CCEEEEEeC
Q psy6127 166 SSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVR--SYRVAKVFRENTDKINSLDYSSD--GSLLISCSD 241 (515)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~--~~~~~~~~~~h~~~I~~l~~spd--~~~lasgs~ 241 (515)
..+.+|...|.++.+.+... ..++++.++.+++|+ +. .+++...+.+|.++|++++|+|+ +++|++|+.
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~-----~latg~~dg~I~vwd--~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~ 75 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGK-----RLATCSSDKTIKIFE--VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (753)
T ss_dssp -----CCCCEEEECCCSSSC-----CEEEEETTTEEEEEE--EETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred eecccCcceeEEEEECCCCC-----eEEEEECCCcEEEEe--cCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC
Confidence 35678877788888876543 234677889999999 65 78889999999999999999998 999999999
Q ss_pred CCeEEEEECCCCe--eeeEecCCCCceeEEEEecC--CCeEEEEEeeCCCeEEEEECCCCe--eeEEecCCCCCeEEEEE
Q psy6127 242 DDQIIIYDCEQGT--SKNTINSKKYGVDLIKFTHS--KTTAIHASTKVDATLRYLSLHDNK--YVRYFPGHVRKVSSLNL 315 (515)
Q Consensus 242 dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~~~d~~v~vwd~~~~~--~~~~~~~h~~~v~~l~~ 315 (515)
||.|++||+.+++ ....+..|...|.+++|+|+ +..+++++ .||.|++||+.++. ....+.+|...|.+++|
T Consensus 76 Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~ 153 (753)
T 3jro_A 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (753)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE
T ss_pred CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe--CCCcEEEEEeecCCCcceeEeecCCCceEEEEe
Confidence 9999999999887 77888899999999999999 77766654 79999999998873 44566789999999999
Q ss_pred cC-------------CCCEEEEEeCCCcEEEEEcCCCCe----EEEE-ecCCCeeEEEECCC---CCEEEEEECCCcEEE
Q psy6127 316 SP-------------VDDSFISGSYDKTVRVWDLRQPNN----VGMI-QLSGNKPIAAYDPE---GLAFAIGVNSDSIKL 374 (515)
Q Consensus 316 ~~-------------~~~~l~s~s~dg~i~iwd~~~~~~----~~~~-~~~~~~~~~~~s~~---~~~l~~g~~dg~i~i 374 (515)
+| +++.+++|+.||.|++||++++.. ...+ .+...+.+++|+|+ ++++++++.||.|++
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 99 588999999999999999988743 3333 34567999999999 899999999999999
Q ss_pred EEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce
Q psy6127 375 YDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNC 429 (515)
Q Consensus 375 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~ 429 (515)
||++...............+...+++++|+|+|+++++++.||.|++|++.++..
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 9999865433334444456778899999999999999999999999999986543
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=6.1e-30 Score=251.79 Aligned_cols=290 Identities=9% Similarity=0.055 Sum_probs=205.7
Q ss_pred CcchhhccccccccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCE
Q psy6127 156 SWDFELLHSLSSLESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSL 235 (515)
Q Consensus 156 ~wd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~ 235 (515)
+|++.+.+.+.++++|...+.+++|.+.... ++ +++.++ +++|+ ..+.+...... ...+..+++.++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~----la-~g~~~~-~~iw~--~~~~~~~~~~~--~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSC----LI-LSTLKS-FEIYN--VHPVAHIMSQE--MRHLSKVRMLHRTNY 72 (355)
T ss_dssp ----------------CCCCCEEEECTTSSE----EE-EECSSE-EEEEE--ETTEEEEEEEE--CSCCCEEEECTTSSE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCE----EE-EEcCCE-EEEEe--cCCcceeeeee--cCCeEEEEEcCCCCE
Confidence 5677788888888888777888888765431 33 455565 67998 66665554433 235888899998888
Q ss_pred E-EEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCC-eeeEEecCCCCCeEEE
Q psy6127 236 L-ISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDN-KYVRYFPGHVRKVSSL 313 (515)
Q Consensus 236 l-asgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~l 313 (515)
+ ++++.|++|++||..+++.+..+. +...|.+++|+++. ++++. ++.|++||+.++ +.+..+.. +...+
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~~---~~~i~i~d~~~~~~~~~~~~~---~~~~~ 143 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVSY---GDVISVFKFGNPWKRITDDIR---FGGVC 143 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEEE---TTEEEEEESSTTCCBSSCCEE---EEEEE
T ss_pred EEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEEE---cCEEEEEECCCCceeeEEecc---CCceE
Confidence 7 467788999999999999998887 55689999998764 44443 899999999988 66666554 45556
Q ss_pred EEcCCCCEEEE--EeCCCcEEEEEcCCCC----------------eEEEE-ecCCCeeEEEECCCCCEEEEEECCCc-EE
Q psy6127 314 NLSPVDDSFIS--GSYDKTVRVWDLRQPN----------------NVGMI-QLSGNKPIAAYDPEGLAFAIGVNSDS-IK 373 (515)
Q Consensus 314 ~~~~~~~~l~s--~s~dg~i~iwd~~~~~----------------~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~-i~ 373 (515)
++++ ..++. |+.||.|++||+++++ .+..+ .+...+.+++|+|+|++|++|+.|++ |+
T Consensus 144 ~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~ 221 (355)
T 3vu4_A 144 EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR 221 (355)
T ss_dssp EEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEE
T ss_pred EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEE
Confidence 7777 56665 5789999999999865 13444 55677999999999999999999998 99
Q ss_pred EEEeecCCCCCceeeec-C-CCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeE--Eee---------------
Q psy6127 374 LYDVRSYDKGPFASFKC-P-GERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQ--SLS--------------- 434 (515)
Q Consensus 374 i~d~~~~~~~~~~~~~~-~-~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~--------------- 434 (515)
+||+++++ .... . ..|...|.+++|+|++++|++++.|++|++||++.+.... .+.
T Consensus 222 iwd~~~~~-----~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (355)
T 3vu4_A 222 VFKTEDGV-----LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLC 296 (355)
T ss_dssp EEETTTCC-----EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSE
T ss_pred EEECCCCc-----EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccccee
Confidence 99998765 3332 2 2378899999999999999999999999999997653211 110
Q ss_pred ---ccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy6127 435 ---GVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAER 471 (515)
Q Consensus 435 ---~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~ 471 (515)
...........++|+|+|+++++++.||.+++|++..
T Consensus 297 ~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 297 NFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 0111112246799999999999999999999998754
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=257.50 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=198.6
Q ss_pred ccCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCeeeeEec--CCCCceeEEEEecCCCeEEEEEeeCCCeEEEEE
Q psy6127 219 ENTDKINSLDYSSDGSLL-ISCSDDDQIIIYDCE--QGTSKNTIN--SKKYGVDLIKFTHSKTTAIHASTKVDATLRYLS 293 (515)
Q Consensus 219 ~h~~~I~~l~~spd~~~l-asgs~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd 293 (515)
+|.+.|++++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++..+++++ .++.+++|+
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~~g~v~~~~ 177 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD--KFGDVYSID 177 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE--TTSEEEEEE
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe--CCCcEEEEe
Confidence 455689999999999996 899999999999999 888888876 5678899999999999887765 699999999
Q ss_pred CCCCeeeE----EecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCCeEEEE--ecCCCeeEEEECCCCCEEE
Q psy6127 294 LHDNKYVR----YFPGHVRKVSSLNLSPV---DDSFISGSYDKTVRVWDLRQPNNVGMI--QLSGNKPIAAYDPEGLAFA 364 (515)
Q Consensus 294 ~~~~~~~~----~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~ 364 (515)
+.+++... .+.+|...|++++|+|+ +++|++|+.|+.|++||+++++.+..+ .+...+.+++|+ ++++|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 98877554 77889999999999999 889999999999999999999888774 456679999999 999999
Q ss_pred EEECCCcEEEEEeecCCCCCceeeecC----------------------CCCCcCeEEEEEcCCCCEEEEEE-CCCcEEE
Q psy6127 365 IGVNSDSIKLYDVRSYDKGPFASFKCP----------------------GERGCEWTGLKFSPDGKLILVST-NGSIIRL 421 (515)
Q Consensus 365 ~g~~dg~i~i~d~~~~~~~~~~~~~~~----------------------~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~i 421 (515)
+++.|+.|++||+++++.. ..+... ......+.+++|+|+++++++++ .++.|++
T Consensus 257 s~~~d~~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~i 334 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNL--STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII 334 (450)
T ss_dssp EEESSSEEEEEETTTCCEE--EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEE
T ss_pred EEeCCCeEEEEECCCCcEe--eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEE
Confidence 9999999999999876421 111110 02345789999999999999999 8999999
Q ss_pred EEC--CCC---ceeEEeeccccCCCCCEEEEEecCCCEEEEEeC------CCcEEEEECC
Q psy6127 422 FDA--FNG---NCVQSLSGVLNNNASPLEATFTPDSQFVASGST------DGQVHIWNAE 470 (515)
Q Consensus 422 wd~--~~~---~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~------dg~I~iwd~~ 470 (515)
|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 335 w~~~~~~~~~l~~~~~~~~~----~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 335 LEMSEKQKGDLALKQIITFP----YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEECSSSTTCEEEEEEEECS----SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEeccCCCCceeeccEeccC----CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999 565 555556553 44999999996544444443 4557888654
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=6e-30 Score=255.47 Aligned_cols=246 Identities=11% Similarity=0.052 Sum_probs=175.9
Q ss_pred ccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-----eEecCCCCceeEEEEec--------CCCeEEEEEe
Q psy6127 217 FRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSK-----NTINSKKYGVDLIKFTH--------SKTTAIHAST 283 (515)
Q Consensus 217 ~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~s~ 283 (515)
...|...+....+++++.+||+|+.|++|+|||..+++.. ..+.+|.+.|.+++|+| +++.++ ++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~la--s~ 162 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIA--SV 162 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEE--EE
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEE--EE
Confidence 4466777777778889999999999999999999987653 34679999999999998 454444 44
Q ss_pred eCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCeEEEE-----------------
Q psy6127 284 KVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDD-SFISGSYDKTVRVWDLRQPNNVGMI----------------- 345 (515)
Q Consensus 284 ~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~----------------- 345 (515)
+.|++|++||+.++.++..+.+|..+|.+++|+|++. +|++|+.|++|++||+++++.....
T Consensus 163 s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp ETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred ECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence 6899999999999988888888999999999999875 7999999999999999987654332
Q ss_pred ---------ecCCCeeEEEEC-CCCCEEEEEECCCcEEEEEeecCCCCCcee--------------eecCCCCCcCeEEE
Q psy6127 346 ---------QLSGNKPIAAYD-PEGLAFAIGVNSDSIKLYDVRSYDKGPFAS--------------FKCPGERGCEWTGL 401 (515)
Q Consensus 346 ---------~~~~~~~~~~~s-~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--------------~~~~~~~~~~i~~l 401 (515)
.+...+.++.|+ |+++.+++++.|+++++||+.......... ..........+ ..
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 321 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL-GA 321 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS-CC
T ss_pred cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce-eE
Confidence 122346677775 899999999999999999998654211100 00001111122 23
Q ss_pred EEcC--CCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy6127 402 KFSP--DGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNA 469 (515)
Q Consensus 402 ~~sp--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~ 469 (515)
.|+| ++.++++|+.||.|++||+.++++...+..+. .+|.+++|+|||++||+++.+| +.+|.+
T Consensus 322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~---~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 322 CPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG---MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS---SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC---CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 4444 34466778889999999999998887776644 3599999999999999998777 656654
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.2e-28 Score=233.33 Aligned_cols=292 Identities=11% Similarity=0.086 Sum_probs=199.0
Q ss_pred eEeeeeccccCC----cEEEEEEcCCCC---EEEEEeCCCeEEEEECCCC---eeeeEecCCCCceeEEEEecCCCeEEE
Q psy6127 211 YRVAKVFRENTD----KINSLDYSSDGS---LLISCSDDDQIIIYDCEQG---TSKNTINSKKYGVDLIKFTHSKTTAIH 280 (515)
Q Consensus 211 ~~~~~~~~~h~~----~I~~l~~spd~~---~lasgs~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~ 280 (515)
.+++..++...+ .+.++-|-..|- .+++++. ..|++|+..++ +.+++++.|+.+|..+.+.|+...+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 444555554433 244555544433 6788876 68999999998 899999999999999999998877777
Q ss_pred EEeeCCCeEEEEEC--CCC----eeeEEecCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcC-CCCeEEEE-ecCCC
Q psy6127 281 ASTKVDATLRYLSL--HDN----KYVRYFPGHVRKVSSLNLSPVDDSFISGS--YDKTVRVWDLR-QPNNVGMI-QLSGN 350 (515)
Q Consensus 281 ~s~~~d~~v~vwd~--~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~s~s--~dg~i~iwd~~-~~~~~~~~-~~~~~ 350 (515)
++-+.-..-.++-+ ... .......+|...|..+ ++++.+.+++ .|+.|++|++. +++.+..+ .+...
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~ 180 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE 180 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc
Confidence 66332222122211 111 1122223455555554 4555555543 59999999994 47766655 44556
Q ss_pred eeEEEECC---CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEE------------EEEEC
Q psy6127 351 KPIAAYDP---EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLI------------LVSTN 415 (515)
Q Consensus 351 ~~~~~~s~---~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l------------~~~s~ 415 (515)
+..++|+| ++..|++++.|++|++||+++++ ....+.....+...+.+++|+|+|+++ ++|+.
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk--~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ--LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC--EEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred eeeEEeeccCCCCceEEEecCCCcEEEEECCCCc--EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 88999999 78999999999999999999865 112222111223467788999999886 56778
Q ss_pred CCcEEEEECCCCceeEEeec--cccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeE-EEEEC
Q psy6127 416 GSIIRLFDAFNGNCVQSLSG--VLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQ-SLQFN 492 (515)
Q Consensus 416 dg~i~iwd~~~~~~~~~~~~--~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~-~l~~s 492 (515)
|++|++||..+++.+..+.. ..++...+. ..+.++.++++|+.|++|+|||+.+++++.++.+ |.+.+. .++|+
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~g-H~~~vvs~vafS 335 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPP-VSDQHWSFVKWS 335 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECC-C--CCCCEEEEC
T ss_pred CcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecC-CCCCeEEEEEEC
Confidence 99999999999988766531 112222233 3334488999999999999999999999999988 776655 68999
Q ss_pred CCCCEEEEeeCC--EEEEcCC
Q psy6127 493 PKYHMLASACSN--MAFWIPT 511 (515)
Q Consensus 493 p~~~~las~~~d--v~iW~~~ 511 (515)
|||++|++|+.| ++||++.
T Consensus 336 PDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp SSSSEEEEECTTSCEEEEEEC
T ss_pred CCCCEEEEEECCCcEEEecCC
Confidence 999999999865 9999863
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.4e-30 Score=249.59 Aligned_cols=261 Identities=10% Similarity=0.066 Sum_probs=204.3
Q ss_pred eeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCeeeeEec-
Q psy6127 191 LAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCE---------QGTSKNTIN- 260 (515)
Q Consensus 191 l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~---------~~~~~~~~~- 260 (515)
+.++++.|+.+++|| ...++++..+. ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+.
T Consensus 50 ~l~sg~~Dg~v~iwd--~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 122 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQ--LKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV 122 (343)
T ss_dssp EEEEEEETTEEEEEE--ESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCcEEEEE--CCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence 445888999999999 77777777766 577888999998 9999999999999765 444444443
Q ss_pred CCCCceeEEEEec--CCCeEEEEEeeCCCeEEEEECCCCeeeEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy6127 261 SKKYGVDLIKFTH--SKTTAIHASTKVDATLRYLSLHDNKYVRYFP-GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLR 337 (515)
Q Consensus 261 ~~~~~v~~~~~~~--~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 337 (515)
.|...|.+++|+| +++.+++++ .|++|++||+++++...... .|...+.+++|+|++.+|++|+.||.|++||++
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWAD--NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEE--TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEe--CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 6678899999999 888776654 79999999999999877664 455689999999999999999999999999999
Q ss_pred CCCeE-EEEe--cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCe--EEEEEcCCCCEEEE
Q psy6127 338 QPNNV-GMIQ--LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEW--TGLKFSPDGKLILV 412 (515)
Q Consensus 338 ~~~~~-~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i--~~l~~sp~~~~l~~ 412 (515)
+++.. ..+. +...+.+++|+|++.+|++++ ++.|++||++..... ..+.....+...+ .+++|+|+|++|++
T Consensus 201 ~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 277 (343)
T 3lrv_A 201 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT--LAYPTYTIPEFKTGTVTYDIDDSGKNMIA 277 (343)
T ss_dssp CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC--BSSCCCBC-----CCEEEEECTTSSEEEE
T ss_pred CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc--eeecccccccccccceEEEECCCCCEEEE
Confidence 99887 6664 467899999999999999999 559999999986421 1111111122222 46999999999999
Q ss_pred EEC-CCcEEEEECCCCceeEEeeccccCCCCCEEEEEec---CCCEEEEEeCCCcEEEEECC
Q psy6127 413 STN-GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTP---DSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 413 ~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp---~g~~l~sgs~dg~I~iwd~~ 470 (515)
++. |+.+++|++.+....... .++..++|+| +++.+++++.||.+.++-..
T Consensus 278 ~s~~d~~i~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 278 YSNESNSLTIYKFDKKTKNWTK-------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EETTTTEEEEEEECTTTCSEEE-------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ecCCCCcEEEEEEcccccceEe-------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 998 999999999766543322 1266788888 88899999999999887543
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=4.4e-28 Score=251.17 Aligned_cols=310 Identities=14% Similarity=0.094 Sum_probs=242.6
Q ss_pred eeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeeeeEecCCCCceeEEE
Q psy6127 193 HSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDC--EQGTSKNTINSKKYGVDLIK 270 (515)
Q Consensus 193 ~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~ 270 (515)
.+...++.+.+|| ..+++++.++..+.. +.+++|+|||++|++++.|++|++||+ .+++.+.++.. ...+..++
T Consensus 153 vs~~~d~~V~v~D--~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va 228 (543)
T 1nir_A 153 VTLRDAGQIALVD--GDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVE 228 (543)
T ss_dssp EEEGGGTEEEEEE--TTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEE
T ss_pred EEEcCCCeEEEEE--CCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEE
Confidence 4667788899999 778888888884333 899999999999999999999999999 88998888884 45689999
Q ss_pred Eec----CCCeEEEEEeeCCCeEEEEECCCCeeeEEecC----------CC-CCeEEEEEcCCCC-EEEEEeCCCcEEEE
Q psy6127 271 FTH----SKTTAIHASTKVDATLRYLSLHDNKYVRYFPG----------HV-RKVSSLNLSPVDD-SFISGSYDKTVRVW 334 (515)
Q Consensus 271 ~~~----~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~----------h~-~~v~~l~~~~~~~-~l~s~s~dg~i~iw 334 (515)
|+| +++.+++++ ..+++|.+||..+++++..+.. |. ..+.++.++|+++ ++++...++.|.+|
T Consensus 229 ~sp~~~~dg~~l~v~~-~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vv 307 (543)
T 1nir_A 229 SSKFKGYEDRYTIAGA-YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 307 (543)
T ss_dssp ECCSTTCTTTEEEEEE-EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred eCCCcCCCCCEEEEEE-ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEE
Confidence 999 999988776 3589999999999999888764 22 3789999999877 56677788999999
Q ss_pred EcCCCCeEE--EEecCCCeeEEEECCCCCEEEEEE-CCCcEEEEEeecCCCCCceeeec-CCCCCcCeEEEEEcCC-CCE
Q psy6127 335 DLRQPNNVG--MIQLSGNKPIAAYDPEGLAFAIGV-NSDSIKLYDVRSYDKGPFASFKC-PGERGCEWTGLKFSPD-GKL 409 (515)
Q Consensus 335 d~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~i~~l~~sp~-~~~ 409 (515)
|+.+.+.+. .+.....+..++|+|+|+++++++ .+++|.+||..+++. ...+.. ...|......+ ++|+ +..
T Consensus 308 d~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l--~~~i~~g~~ph~g~g~~~-~~p~~g~~ 384 (543)
T 1nir_A 308 NYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--SALVDVGKTPHPGRGANF-VHPKYGPV 384 (543)
T ss_dssp ECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSBCCTTCEEE-EETTTEEE
T ss_pred EecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE--EEeeccCCCCCCCCCccc-CCCCCccE
Confidence 998876544 455555678899999999877655 589999999987642 122221 11243333233 5777 555
Q ss_pred EEEEE-CCCcEEEEECCC-------CceeEEeeccccCCCCCEEEEEecCCCEEEEEe-------CCCcEEEEECCCCeE
Q psy6127 410 ILVST-NGSIIRLFDAFN-------GNCVQSLSGVLNNNASPLEATFTPDSQFVASGS-------TDGQVHIWNAERGYK 474 (515)
Q Consensus 410 l~~~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs-------~dg~I~iwd~~~~~~ 474 (515)
++++. .|++|.+||+.+ +++++++..+... +..++++|+|++|++++ .+++|.+||+.+++.
T Consensus 385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~---~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG---SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC---ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 66665 579999999998 8889998875543 67899999999999987 267999999999887
Q ss_pred E-EEEc-------CCCCCCeEEEEECCCCCEEEEee-------CCEEEEcCCCC
Q psy6127 475 V-CVLD-------GDHPSAVQSLQFNPKYHMLASAC-------SNMAFWIPTLS 513 (515)
Q Consensus 475 ~-~~~~-------~~h~~~V~~l~~sp~~~~las~~-------~dv~iW~~~~~ 513 (515)
. ..+. ..+...+..++|+|+|+.+..+. +.+.|||..+.
T Consensus 462 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 462 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp CCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 7 4431 23678899999999999988652 34999998753
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=2.7e-28 Score=245.11 Aligned_cols=278 Identities=13% Similarity=0.142 Sum_probs=220.2
Q ss_pred EEEEcccee--eeeEee--eeccccCCcEEEEEEcC--------------CCCEEEEEeCC------CeEEEEECCCCee
Q psy6127 200 ITKCSENLV--RSYRVA--KVFRENTDKINSLDYSS--------------DGSLLISCSDD------DQIIIYDCEQGTS 255 (515)
Q Consensus 200 ~i~~wd~~~--~~~~~~--~~~~~h~~~I~~l~~sp--------------d~~~lasgs~d------g~i~iwd~~~~~~ 255 (515)
.+++|| + .+++++ ..+.+|...+..+++++ .+..++.++.+ ++|++||.. +..
T Consensus 94 ~i~lwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~ 170 (415)
T 2hqs_A 94 AYQLVD--TGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYN 170 (415)
T ss_dssp EEEEEE--CSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCS
T ss_pred EEEEEe--CCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCC
Confidence 789999 6 666666 56899999998888875 25667766654 799999997 556
Q ss_pred eeEecCCCCceeEEEEecCCCeEEEEEeeCC---CeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEE-EEeCCCc-
Q psy6127 256 KNTINSKKYGVDLIKFTHSKTTAIHASTKVD---ATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKT- 330 (515)
Q Consensus 256 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d---~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~- 330 (515)
...+..|...+.+++|+|+++.+++++ .+ ..|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.|+.
T Consensus 171 ~~~l~~~~~~v~~~~~Spdg~~la~~s--~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 171 QFVVHRSPQPLMSPAWSPDGSKLAYVT--FESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CEEEeCCCCcceeeEEcCCCCEEEEEE--ecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 677888899999999999999988876 34 49999999998875 4667888999999999999887 6666655
Q ss_pred -EEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEEC-CC--cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCC
Q psy6127 331 -VRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVN-SD--SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPD 406 (515)
Q Consensus 331 -i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~ 406 (515)
|++||+++++......+...+..++|+|+|+.|++++. ++ .|.+||+.+++ .. ....+...+.+++|+|+
T Consensus 248 ~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-----~~-~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 248 NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-----PQ-RITWEGSQNQDADVSSD 321 (415)
T ss_dssp EEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-----CE-ECCCSSSEEEEEEECTT
T ss_pred eEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-----EE-EEecCCCcccCeEECCC
Confidence 99999999887554455666889999999999998886 45 56666776643 11 12234457889999999
Q ss_pred CCEEEEEECC---CcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCC---cEEEEECCCCeEEEEEcC
Q psy6127 407 GKLILVSTNG---SIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDG---QVHIWNAERGYKVCVLDG 480 (515)
Q Consensus 407 ~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg---~I~iwd~~~~~~~~~~~~ 480 (515)
|++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+|+|++|++++.++ .|++||+. +.....+..
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~----~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~ 395 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF----LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA 395 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS----SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCC
T ss_pred CCEEEEEECcCCceEEEEEECCCCCEE-EecCCC----CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeC
Confidence 9999988764 58999999988764 343322 489999999999999888776 79999987 555667777
Q ss_pred CCCCCeEEEEECCCCC
Q psy6127 481 DHPSAVQSLQFNPKYH 496 (515)
Q Consensus 481 ~h~~~V~~l~~sp~~~ 496 (515)
|.+.|.+++|+|...
T Consensus 396 -~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 396 -TDGQVKFPAWSPYLH 410 (415)
T ss_dssp -SSSEEEEEEECCCCC
T ss_pred -CCCCCcCCccccccc
Confidence 899999999999643
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=7.4e-27 Score=241.99 Aligned_cols=325 Identities=12% Similarity=0.097 Sum_probs=242.1
Q ss_pred hheeecccccccccccCCCCcCCCcchhhccccccccCC-ceeEEEEEEeeccccceeeeeeeCCCCcEEEEcccee--e
Q psy6127 133 KIVAKSENMCNLTKLDLPYNKLGSWDFELLHSLSSLESP-HFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLV--R 209 (515)
Q Consensus 133 ~~la~~~~~~~i~~~~~~~n~~~~wd~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~--~ 209 (515)
++++++..++.| .+||..+++.+.+++.+ .....+++++++. +. +++.+..+.+|| + .
T Consensus 150 ~~~vs~~~d~~V----------~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~------l~-v~~~d~~V~v~D--~~~~ 210 (543)
T 1nir_A 150 LFSVTLRDAGQI----------ALVDGDSKKIVKVIDTGYAVHISRMSASGRY------LL-VIGRDARIDMID--LWAK 210 (543)
T ss_dssp EEEEEEGGGTEE----------EEEETTTCCEEEEEECSTTEEEEEECTTSCE------EE-EEETTSEEEEEE--TTSS
T ss_pred EEEEEEcCCCeE----------EEEECCCceEEEEEecCcccceEEECCCCCE------EE-EECCCCeEEEEE--CcCC
Confidence 456666667777 99999999999999844 4223334444443 22 334458899999 6 6
Q ss_pred eeEeeeeccccCCcEEEEEEcC----CCCEEEEEeC-CCeEEEEECCCCeeeeEecCC-----------CCceeEEEEec
Q psy6127 210 SYRVAKVFRENTDKINSLDYSS----DGSLLISCSD-DDQIIIYDCEQGTSKNTINSK-----------KYGVDLIKFTH 273 (515)
Q Consensus 210 ~~~~~~~~~~h~~~I~~l~~sp----d~~~lasgs~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~ 273 (515)
+++++.++.. ...+..++|+| ||++|++++. +++|.+||..+++++..+..+ ...+..+.++|
T Consensus 211 t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 211 EPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp SCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred CCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 7888888874 45679999999 9999999984 899999999999998888652 23688999999
Q ss_pred CCCeEEEEEeeCCCeEEEEECCCCeeeE--EecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCeEEEEecC--
Q psy6127 274 SKTTAIHASTKVDATLRYLSLHDNKYVR--YFPGHVRKVSSLNLSPVDDSFISGS-YDKTVRVWDLRQPNNVGMIQLS-- 348 (515)
Q Consensus 274 ~~~~l~~~s~~~d~~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-- 348 (515)
++..+++.. ..++.|.+||..+.+.+. .+ .+...+.++.|+|+|+++++++ .+++|.+||..+++.+..+...
T Consensus 290 ~~~~~~vs~-~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ 367 (543)
T 1nir_A 290 EHPEFIVNV-KETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 367 (543)
T ss_dssp SSSEEEEEE-TTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred CCCEEEEEE-CCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence 988776655 679999999998866443 33 3566788999999999776554 5899999999999988887532
Q ss_pred ---CCeeEEEECCC-CCEEEEEE-CCCcEEEEEeecCCC--CCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-------
Q psy6127 349 ---GNKPIAAYDPE-GLAFAIGV-NSDSIKLYDVRSYDK--GPFASFKCPGERGCEWTGLKFSPDGKLILVST------- 414 (515)
Q Consensus 349 ---~~~~~~~~s~~-~~~l~~g~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s------- 414 (515)
+....+ ++|+ +..++++. .+++|.+||+.+... ...........+...+..++++|++++|++++
T Consensus 368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~ 446 (543)
T 1nir_A 368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR 446 (543)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHH
T ss_pred CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcc
Confidence 112222 4677 55566665 579999999987221 00123333334555566899999999999987
Q ss_pred CCCcEEEEECCCCcee-EEeec-----cccCCCCCEEEEEecCCCEEEEEe-----CCCcEEEEECCCCeEEEEEcC
Q psy6127 415 NGSIIRLFDAFNGNCV-QSLSG-----VLNNNASPLEATFTPDSQFVASGS-----TDGQVHIWNAERGYKVCVLDG 480 (515)
Q Consensus 415 ~dg~i~iwd~~~~~~~-~~~~~-----~~~~~~~i~~~~~sp~g~~l~sgs-----~dg~I~iwd~~~~~~~~~~~~ 480 (515)
.+++|.+||+.+++.. ..+.. ...+...+..+.|+|+|+.++++. .|+.|.|||.++++++.+++.
T Consensus 447 ~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 447 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred cCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 2679999999999877 44321 122344589999999999988763 479999999999999999985
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=7.8e-27 Score=234.43 Aligned_cols=277 Identities=13% Similarity=0.127 Sum_probs=214.7
Q ss_pred CCcEEEEEEcCCCC-EEEEEe----CCC----eEEEEEC--CCCeee--eEecCCCCceeEEEEec--------------
Q psy6127 221 TDKINSLDYSSDGS-LLISCS----DDD----QIIIYDC--EQGTSK--NTINSKKYGVDLIKFTH-------------- 273 (515)
Q Consensus 221 ~~~I~~l~~spd~~-~lasgs----~dg----~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~-------------- 273 (515)
...+...+|++.|. ++++|+ .|| ++++||+ .+++.+ ..+.+|...+..+++.+
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35677888988774 666876 467 9999999 888877 45788888787777765
Q ss_pred CCCeEEEEEee-CC---CeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCCeEEEEe
Q psy6127 274 SKTTAIHASTK-VD---ATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDK---TVRVWDLRQPNNVGMIQ 346 (515)
Q Consensus 274 ~~~~l~~~s~~-~d---~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~ 346 (515)
.+..+++++.. .+ +.|++||+.. .....+.+|...+.+++|+|+|+.|++++.|+ .|++||+++++......
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~ 220 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS 220 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec
Confidence 25666666632 12 7999999974 55677778999999999999999999999885 99999999998876666
Q ss_pred cCCCeeEEEECCCCCEEE-EEECCCc--EEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEEC-CC--cEE
Q psy6127 347 LSGNKPIAAYDPEGLAFA-IGVNSDS--IKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTN-GS--IIR 420 (515)
Q Consensus 347 ~~~~~~~~~~s~~~~~l~-~g~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~-dg--~i~ 420 (515)
+...+.+++|+|+|+.|+ +++.++. |++||+++++ . .....+...+.+++|+|||++|++++. ++ .|+
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-----~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-----I-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----E-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-----E-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence 667789999999999888 5555554 8899987753 2 223345678899999999999998886 44 688
Q ss_pred EEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC---CcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCE
Q psy6127 421 LFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD---GQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHM 497 (515)
Q Consensus 421 iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 497 (515)
+||+.+++.. .+..+ ...+..++|+|+|++|++++.+ +.|++||+.+++.. .+.. +. .+.+++|+|+|++
T Consensus 295 ~~d~~~~~~~-~l~~~---~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~-~~-~~~~~~~spdg~~ 367 (415)
T 2hqs_A 295 KVNINGGAPQ-RITWE---GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS-TF-LDETPSLAPNGTM 367 (415)
T ss_dssp EEETTSSCCE-ECCCS---SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCC-SS-SCEEEEECTTSSE
T ss_pred EEECCCCCEE-EEecC---CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecC-CC-CcCCeEEcCCCCE
Confidence 8898887643 33322 2347889999999999988764 58999999998874 4544 43 8999999999999
Q ss_pred EEEeeC-----CEEEEcCC
Q psy6127 498 LASACS-----NMAFWIPT 511 (515)
Q Consensus 498 las~~~-----dv~iW~~~ 511 (515)
|++++. .+.+|+++
T Consensus 368 l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEEEEETTEEEEEEEETT
T ss_pred EEEEEcCCCccEEEEEECC
Confidence 888763 36777765
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=1.2e-25 Score=218.35 Aligned_cols=279 Identities=13% Similarity=0.134 Sum_probs=210.2
Q ss_pred EEcCCCCE-EEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCee-eEEecC
Q psy6127 228 DYSSDGSL-LISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKY-VRYFPG 305 (515)
Q Consensus 228 ~~spd~~~-lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~-~~~~~~ 305 (515)
.|.+++++ +++++.++.|++||..+++....+..+...+ .++|+|+++.+++++ ..++.|.+||..+++. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~-~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTS-DFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEE-STTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEe-CCCCeEEEEECCCCceeEEeccc
Confidence 46665555 6777889999999999999988887776677 999999999887776 3588999999999987 777776
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEE-EECCCc-EEEEEeecC
Q psy6127 306 HVRKVSSLNLSPVDDSFISGSYDK---TVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAI-GVNSDS-IKLYDVRSY 380 (515)
Q Consensus 306 h~~~v~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~-i~i~d~~~~ 380 (515)
+..+..+++|+|++++++++..++ .|.+||+.+++.+..+........++|+|+|+++++ ...++. +.+|++...
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 766666699999999998555553 899999999999888887777899999999985554 456688 999998753
Q ss_pred CCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCce---eEEeeccccCCCCCEEEEEecCCCEEE
Q psy6127 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNC---VQSLSGVLNNNASPLEATFTPDSQFVA 456 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~---~~~~~~~~~~~~~i~~~~~sp~g~~l~ 456 (515)
........... ........++|+|+|+++++++ .++.|++||+.+++. +..+... ..+..++|+|+|++++
T Consensus 162 g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 162 GVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN----NLPGTIVVSRDGSTVY 236 (331)
T ss_dssp CCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS----SCCCCEEECTTSSEEE
T ss_pred CcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC----CCCceEEECCCCCEEE
Confidence 21111101111 2334578999999999776655 688999999999987 6666532 3368899999999776
Q ss_pred EEe-CCCcEEEEECCCCeE--EEEEcCC---CCC---CeEEEEECCCCCEEEEeeC---CEEEEcCCCC
Q psy6127 457 SGS-TDGQVHIWNAERGYK--VCVLDGD---HPS---AVQSLQFNPKYHMLASACS---NMAFWIPTLS 513 (515)
Q Consensus 457 sgs-~dg~I~iwd~~~~~~--~~~~~~~---h~~---~V~~l~~sp~~~~las~~~---dv~iW~~~~~ 513 (515)
+++ .++.|.+||..+++. +..+... +.. ....++|+||+++|+.++. .+.+|+++..
T Consensus 237 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 665 578899999999987 4443321 122 2356899999998876653 3999998753
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=2.5e-26 Score=248.37 Aligned_cols=282 Identities=13% Similarity=0.106 Sum_probs=219.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeC-CC-----eEEEEECCCCeeeeEecCCCC------------------------ceeEEE
Q psy6127 221 TDKINSLDYSSDGSLLISCSD-DD-----QIIIYDCEQGTSKNTINSKKY------------------------GVDLIK 270 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~-dg-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~~~ 270 (515)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.. .+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 999999999988777665433 378999
Q ss_pred EecCCCeEEEEEeeCCCeEEEEECCCCe--eeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC
Q psy6127 271 FTHSKTTAIHASTKVDATLRYLSLHDNK--YVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS 348 (515)
Q Consensus 271 ~~~~~~~l~~~s~~~d~~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 348 (515)
|+|||+.+++++ ++.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.+++........
T Consensus 116 ~SpDg~~l~~~~---~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPL---GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEE---TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEe---CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 999999998876 4999999999873 4456777888999999999999999887 469999999988766544332
Q ss_pred CC-----------------eeEEEECCCCCEEEEEECCC---------------------------------cEEEEEee
Q psy6127 349 GN-----------------KPIAAYDPEGLAFAIGVNSD---------------------------------SIKLYDVR 378 (515)
Q Consensus 349 ~~-----------------~~~~~~s~~~~~l~~g~~dg---------------------------------~i~i~d~~ 378 (515)
.. +..++|+|||++|++++.|+ .|.+||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 21 36799999999999987665 78888887
Q ss_pred c-CCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEEC-----CCcEEEEECCCCceeEEeeccccC-CCCCEEEEEecC
Q psy6127 379 S-YDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTN-----GSIIRLFDAFNGNCVQSLSGVLNN-NASPLEATFTPD 451 (515)
Q Consensus 379 ~-~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~-----dg~i~iwd~~~~~~~~~~~~~~~~-~~~i~~~~~sp~ 451 (515)
+ ++. ..+.....+...+..++| |||++|++++. +..|++||+.+++....+..+... ...+..++|+||
T Consensus 272 ~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 272 EQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp TTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred CCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 6 542 122212246678899999 99999987764 567999999999887766654321 112467899999
Q ss_pred CCEEEEEeCCCcEEEEECC-CCeEEEEEcCCCCCCeEEE-EECCCCCEEEEee-C----CEEEEcCCC
Q psy6127 452 SQFVASGSTDGQVHIWNAE-RGYKVCVLDGDHPSAVQSL-QFNPKYHMLASAC-S----NMAFWIPTL 512 (515)
Q Consensus 452 g~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l-~~sp~~~~las~~-~----dv~iW~~~~ 512 (515)
|+++++++.||.++||.++ +++ ...+.. |...|..+ .|+|+++.++..+ . .++||+++.
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~-~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGK-AAALTH-GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSC-EEESCC-SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CeEEEEecCCCccEEEEEcCCCC-eeeeee-cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999999999988888765 455 666766 77788887 5999998775543 2 588998865
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=9.8e-25 Score=213.73 Aligned_cols=272 Identities=13% Similarity=0.103 Sum_probs=219.0
Q ss_pred cCCcEEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEE
Q psy6127 220 NTDKINSLDYSSDGSLLISCSD-------DDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYL 292 (515)
Q Consensus 220 h~~~I~~l~~spd~~~lasgs~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vw 292 (515)
....+..++|+|+++++++++. ++.|.+||..+++....+... ..+..++|+|+++.++++. ..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~-~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGN-TVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEE-TTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEe-cCCCEEEEE
Confidence 3456889999999999988874 568999999999988887654 4478899999999877766 468999999
Q ss_pred ECCCCeeeEEecCCCCC---------eEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCC
Q psy6127 293 SLHDNKYVRYFPGHVRK---------VSSLNLSPVDDSFISGS--YDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEG 360 (515)
Q Consensus 293 d~~~~~~~~~~~~h~~~---------v~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~ 360 (515)
|..+++.+..+..+... +.+++|+|+++.+++++ .++.|.+||.++++....+. ....+..++|+|++
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 99999988877654432 78999999999877776 47899999999999988887 44557889999999
Q ss_pred CEEEEEECCCcEEEEEeecCCCCCceeeec-CCCCCcCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCceeEEeecccc
Q psy6127 361 LAFAIGVNSDSIKLYDVRSYDKGPFASFKC-PGERGCEWTGLKFSPDGKLILVSTN-GSIIRLFDAFNGNCVQSLSGVLN 438 (515)
Q Consensus 361 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~i~~l~~sp~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~ 438 (515)
+.+++++.++.+.+||..+++. ...... ...+...+.+++|+|+++++++++. ++.|.+||..+++.+..+....
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred CEEEEEcCCCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 9999999999999999887541 112222 1124456778999999998877765 4899999999999887776432
Q ss_pred CCCCCEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee
Q psy6127 439 NNASPLEATFTPDSQFVASGS-TDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC 502 (515)
Q Consensus 439 ~~~~i~~~~~sp~g~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~ 502 (515)
...++|+|+|+++++++ .++.|.+||..+++.+..+.. ...+.+++|+|++++++.+.
T Consensus 274 ----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 274 ----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp ----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEE
T ss_pred ----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEE
Confidence 25699999999766655 689999999999999988874 45789999999999666554
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=4.5e-26 Score=246.33 Aligned_cols=297 Identities=11% Similarity=0.076 Sum_probs=219.2
Q ss_pred EEEEccceeeeeEeeeeccccCC------------------------cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-
Q psy6127 200 ITKCSENLVRSYRVAKVFRENTD------------------------KINSLDYSSDGSLLISCSDDDQIIIYDCEQGT- 254 (515)
Q Consensus 200 ~i~~wd~~~~~~~~~~~~~~h~~------------------------~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~- 254 (515)
.+++|+ +..++....+..|.. .|.+++|||||++|++++. +.|++||+.++.
T Consensus 65 ~i~~~d--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~ 141 (741)
T 2ecf_A 65 DLWSYD--IGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK 141 (741)
T ss_dssp EEEEEE--TTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCST
T ss_pred EEEEEE--CCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCc
Confidence 789998 666666666655433 3889999999999999987 999999999873
Q ss_pred -eeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCC----------------eEEEEEcC
Q psy6127 255 -SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRK----------------VSSLNLSP 317 (515)
Q Consensus 255 -~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~----------------v~~l~~~~ 317 (515)
....+..+...+..++|+|+|+.+++++ ++.|++||+.+++.......+... +.+++|+|
T Consensus 142 ~~~~~l~~~~~~~~~~~~SPDG~~la~~~---~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp 218 (741)
T 2ecf_A 142 AAVRQLTHGEGFATDAKLSPKGGFVSFIR---GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP 218 (741)
T ss_dssp TSCCBCCCSSSCEEEEEECTTSSEEEEEE---TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT
T ss_pred ceEEEcccCCcccccccCCCCCCEEEEEe---CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC
Confidence 4556777888899999999999988876 679999999998877655544432 47899999
Q ss_pred CCCEEEEEeCCC---------------------------------cEEEEEcCC-CCeEEEEe---cCCCeeEEEECCCC
Q psy6127 318 VDDSFISGSYDK---------------------------------TVRVWDLRQ-PNNVGMIQ---LSGNKPIAAYDPEG 360 (515)
Q Consensus 318 ~~~~l~s~s~dg---------------------------------~i~iwd~~~-~~~~~~~~---~~~~~~~~~~s~~~ 360 (515)
||+.|++++.|+ .|.+||+.+ ++...... +...+..++| |||
T Consensus 219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg 297 (741)
T 2ecf_A 219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP 297 (741)
T ss_dssp TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET
T ss_pred CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC
Confidence 999999988766 789999998 87655432 3345778999 999
Q ss_pred CEEEEEEC-----CCcEEEEEeecCCCCCceeeecCC-CCCcCeEEEEEcCCCCEEEEEECCCcEEEEECC-CCceeEEe
Q psy6127 361 LAFAIGVN-----SDSIKLYDVRSYDKGPFASFKCPG-ERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAF-NGNCVQSL 433 (515)
Q Consensus 361 ~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~-~~~~~~~~ 433 (515)
+.|++++. +..|++||+.+++... ...... .....+..++|+|||+++++++.++.+++|.+. +++ ...+
T Consensus 298 ~~l~~~~~~~~~~~~~i~~~d~~~g~~~~--~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l 374 (741)
T 2ecf_A 298 QHLSFQRQSRDQKKLDLVEVTLASNQQRV--LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL 374 (741)
T ss_dssp TEEEEEEEETTSSEEEEEEEETTTCCEEE--EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES
T ss_pred CEEEEEEecccCCeEEEEEEECCCCceEE--EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee
Confidence 99998764 5679999988754211 111111 000134578999999988888899988888765 344 5555
Q ss_pred eccccCCCCCEEE-EEecCCCEEEE-EeCCC--cEEEEECCC-CeEEEEEcCCCCCCeEEEEECCCCCEEEEeeC-----
Q psy6127 434 SGVLNNNASPLEA-TFTPDSQFVAS-GSTDG--QVHIWNAER-GYKVCVLDGDHPSAVQSLQFNPKYHMLASACS----- 503 (515)
Q Consensus 434 ~~~~~~~~~i~~~-~~sp~g~~l~s-gs~dg--~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~----- 503 (515)
..+ ...+..+ .|+|+|+.|+. ++.++ .+++|++.. +.....+.. ...+..++|+||++.++....
T Consensus 375 ~~~---~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~p 449 (741)
T 2ecf_A 375 THG---NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK--APGMHSASFARNASVYVDSWSNNSTP 449 (741)
T ss_dssp CCS---SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC--SCSEEEEEECTTSSEEEEEEEETTEE
T ss_pred eec---ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc--CCCceEEEECCCCCEEEEEecCCCCC
Confidence 543 3336676 59999987754 45555 899999864 555555653 567899999999998887542
Q ss_pred -CEEEEcCC
Q psy6127 504 -NMAFWIPT 511 (515)
Q Consensus 504 -dv~iW~~~ 511 (515)
.+.+|+.+
T Consensus 450 ~~~~l~~~~ 458 (741)
T 2ecf_A 450 PQIELFRAN 458 (741)
T ss_dssp EEEEEEETT
T ss_pred CeEEEEEcC
Confidence 26667653
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=3e-25 Score=248.48 Aligned_cols=275 Identities=13% Similarity=0.062 Sum_probs=218.6
Q ss_pred eccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEEC
Q psy6127 216 VFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQ-GTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL 294 (515)
Q Consensus 216 ~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~ 294 (515)
.+.+|...+.++.|+++ .++++++.|++++||.+.. +.....+..|. .+...+|+|+|+.++++. ++.|++||+
T Consensus 198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~---~~~i~~~d~ 272 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK---GGSIYIFNP 272 (1045)
T ss_dssp EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE---TTEEEEECT
T ss_pred ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe---CCEEEEecC
Confidence 34688999999999998 6777888889999998753 44555666554 467789999999888764 899999999
Q ss_pred CCCeeeEEecC-----------CCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCC-CeeEEEECCCCC
Q psy6127 295 HDNKYVRYFPG-----------HVRKVSSLNLS-PVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSG-NKPIAAYDPEGL 361 (515)
Q Consensus 295 ~~~~~~~~~~~-----------h~~~v~~l~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~s~~~~ 361 (515)
...+ +..+.+ |...+.+++|+ |||+.+++++ ++.+.+|++..++......+.. .+..++|+ +|+
T Consensus 273 ~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 273 DTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKV 349 (1045)
T ss_dssp TTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEE
T ss_pred CceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCC
Confidence 5444 335554 34478999999 9999998887 7899999998887655434444 57889999 999
Q ss_pred EEEEEECCCcEE-EEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCC
Q psy6127 362 AFAIGVNSDSIK-LYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440 (515)
Q Consensus 362 ~l~~g~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 440 (515)
.+++++.++.+. +||+.... ..... .+...+..++|+|||++|++++.++.+++||+.+++.......+.
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~-----~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~--- 420 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGK-----AEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE--- 420 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCC-----EEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS---
T ss_pred eEEEEECCCceEEEEECCCCC-----ceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC---
Confidence 999999888888 88877643 22222 566788999999999999999999999999999998877665543
Q ss_pred CCCEEEEEecCCCEEEEEeCCC----------cEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEE
Q psy6127 441 ASPLEATFTPDSQFVASGSTDG----------QVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFW 508 (515)
Q Consensus 441 ~~i~~~~~sp~g~~l~sgs~dg----------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW 508 (515)
..+..++|+|||++|++++.++ .|++||+.+++ ...+.. |...+.+++|+|||+.|+.++.+ .++|
T Consensus 421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~-~~~~~~~~~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT-ENSHDYAPAFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC-SSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC-CCcccCCceEcCCCCEEEEEecccCCcCc
Confidence 3478999999999998887654 89999999887 566666 88889999999999999887753 5556
Q ss_pred c
Q psy6127 509 I 509 (515)
Q Consensus 509 ~ 509 (515)
+
T Consensus 499 ~ 499 (1045)
T 1k32_A 499 D 499 (1045)
T ss_dssp C
T ss_pred c
Confidence 5
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=1.3e-24 Score=211.70 Aligned_cols=291 Identities=10% Similarity=0.125 Sum_probs=205.8
Q ss_pred eCCCCcEEEEccceee---eeEeeeeccccCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCe--eeeEecCCCCc
Q psy6127 194 SRSSRTITKCSENLVR---SYRVAKVFRENTDKINSLDYSSDGSLLISCSDD-DQIIIYDCE--QGT--SKNTINSKKYG 265 (515)
Q Consensus 194 s~~~~~~i~~wd~~~~---~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~d-g~i~iwd~~--~~~--~~~~~~~~~~~ 265 (515)
+...++.+.+|+ +. ..+.... ..|...+.+++|+|+|++|++++.+ +.|++|++. +++ .+..+..+. .
T Consensus 10 ~~~~~~~v~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 10 ASPESQQIHVWN--LNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEGGGTEEEEEE--ECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred eCCCCCeEEEEE--ECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 445677899997 42 2233333 3577889999999999999999887 999999997 554 334455444 7
Q ss_pred eeEEEEecCCCeEEEEEeeCCCeEEEEEC---CCCeeeEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCC-CC
Q psy6127 266 VDLIKFTHSKTTAIHASTKVDATLRYLSL---HDNKYVRYFPGHVRKVSSLNLSPVDDSFISGS-YDKTVRVWDLRQ-PN 340 (515)
Q Consensus 266 v~~~~~~~~~~~l~~~s~~~d~~v~vwd~---~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~-~~ 340 (515)
+..++|+|+++.+++++ ..++.|.+||+ .+.+....+..+ ..+.+++|+|+++.+++++ .++.|.+||+.+ ++
T Consensus 86 ~~~~~~s~dg~~l~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGS-YNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CSEEEECTTSSEEEEEE-TTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CcEEEEcCCCCEEEEEe-cCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 89999999999887765 35899999999 444555555544 4588999999999888887 899999999987 65
Q ss_pred eEE----EE--ecCCCeeEEEECCCCCEEEEEE-CCCcEEEEEeecCCCCC--ceeeec-CC--CCCcCeEEEEEcCCCC
Q psy6127 341 NVG----MI--QLSGNKPIAAYDPEGLAFAIGV-NSDSIKLYDVRSYDKGP--FASFKC-PG--ERGCEWTGLKFSPDGK 408 (515)
Q Consensus 341 ~~~----~~--~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~--~~~~~~-~~--~~~~~i~~l~~sp~~~ 408 (515)
... .. .....+..++|+|+++++++++ .++.+.+|++....... ...... .. .....+..++|+|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 432 22 2234577899999999776655 78999999996422111 112221 11 1134566899999999
Q ss_pred EEEEEE-CCCcEEEEECC--CC--ceeEEeeccccCCCCCEEEEEecCCCEEEEEe-CCCcEEEE--ECCCCe--EEEEE
Q psy6127 409 LILVST-NGSIIRLFDAF--NG--NCVQSLSGVLNNNASPLEATFTPDSQFVASGS-TDGQVHIW--NAERGY--KVCVL 478 (515)
Q Consensus 409 ~l~~~s-~dg~i~iwd~~--~~--~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs-~dg~I~iw--d~~~~~--~~~~~ 478 (515)
+++++. .++.|.+||+. ++ +.+..+... . .+..++|+|+|++|++++ .++.|.+| |..+++ .+..+
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---T-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---S-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCCCCceEEeeeecCC---C-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc
Confidence 888555 78999999998 33 333333322 2 278899999999888887 67999999 555664 34444
Q ss_pred cCCCCCCeEEEEECCCCC
Q psy6127 479 DGDHPSAVQSLQFNPKYH 496 (515)
Q Consensus 479 ~~~h~~~V~~l~~sp~~~ 496 (515)
.. .....+++|.|+.+
T Consensus 320 ~~--g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 320 AV--GQGPMWVVVNAHEG 335 (343)
T ss_dssp EC--SSSCCEEEEEEEC-
T ss_pred cc--CCCCeeEEEEcccC
Confidence 43 24466788877543
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=4.3e-25 Score=237.34 Aligned_cols=298 Identities=10% Similarity=0.035 Sum_probs=213.6
Q ss_pred CCcEEEEccceeeeeEee-eeccccC-----------------CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeE
Q psy6127 197 SRTITKCSENLVRSYRVA-KVFRENT-----------------DKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNT 258 (515)
Q Consensus 197 ~~~~i~~wd~~~~~~~~~-~~~~~h~-----------------~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~ 258 (515)
+++ | +|| ..+++.+ ..+..|. ..|.+++|||| +.++.+. ++.+++||+.+++...
T Consensus 43 ~~~-i-~~d--~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~- 115 (706)
T 2z3z_A 43 GDD-L-VFN--KANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY- 115 (706)
T ss_dssp TTE-E-EEE--C-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-
T ss_pred CCc-E-EEE--CCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-
Confidence 345 6 888 6677663 3344443 56999999999 6666654 5999999999887654
Q ss_pred ecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC-----CeeeEEecCCCCC--------------eEEEEEcCCC
Q psy6127 259 INSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD-----NKYVRYFPGHVRK--------------VSSLNLSPVD 319 (515)
Q Consensus 259 ~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~-----~~~~~~~~~h~~~--------------v~~l~~~~~~ 319 (515)
+..+...+..++|+|+|+.++++. ++.|++||+.+ ++.......+... +.+++|+|||
T Consensus 116 l~~~~~~~~~~~~SpdG~~la~~~---~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg 192 (706)
T 2z3z_A 116 LFDTNEETASLDFSPVGDRVAYVR---NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG 192 (706)
T ss_dssp EECCTTCCTTCEECTTSSEEEEEE---TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS
T ss_pred ccCCcccccCCcCCCCCCEEEEEE---CCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC
Confidence 444567789999999999988753 89999999998 7776655444443 4899999999
Q ss_pred CEEEEEe---------------------------------CCCcEEEEEcCCCCeEEEEe---cCCCeeEEEECCCCCEE
Q psy6127 320 DSFISGS---------------------------------YDKTVRVWDLRQPNNVGMIQ---LSGNKPIAAYDPEGLAF 363 (515)
Q Consensus 320 ~~l~s~s---------------------------------~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~s~~~~~l 363 (515)
++|++++ .+..|++||+.+++...... +...+..++|+|||+.+
T Consensus 193 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 272 (706)
T 2z3z_A 193 SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENIL 272 (706)
T ss_dssp SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEE
T ss_pred CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEE
Confidence 9999987 44679999999887655442 23447889999999999
Q ss_pred EEEECCC-----cEEEEEeecCCCCCceeeec--CCCCCcCeEEEEEcC--CCCEEEEEECCCcEEEEECC-CCceeEEe
Q psy6127 364 AIGVNSD-----SIKLYDVRSYDKGPFASFKC--PGERGCEWTGLKFSP--DGKLILVSTNGSIIRLFDAF-NGNCVQSL 433 (515)
Q Consensus 364 ~~g~~dg-----~i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~l~~sp--~~~~l~~~s~dg~i~iwd~~-~~~~~~~~ 433 (515)
++++.++ .|.+||+.+++. ...+.. .......+..++|+| +|+++++++.++.+++|++. ++..+..+
T Consensus 273 ~~~~~~~~~~~~~v~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l 350 (706)
T 2z3z_A 273 YVAEVNRAQNECKVNAYDAETGRF--VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV 350 (706)
T ss_dssp EEEEECTTSCEEEEEEEETTTCCE--EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC
T ss_pred EEEEeCCCCCeeEEEEEECCCCce--eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec
Confidence 9987765 899999887521 111111 111111235789999 99999999999999999876 56666666
Q ss_pred eccccCCCCCEE-EEEecCCCEEEEEeC-CC----cEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeC----
Q psy6127 434 SGVLNNNASPLE-ATFTPDSQFVASGST-DG----QVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS---- 503 (515)
Q Consensus 434 ~~~~~~~~~i~~-~~~sp~g~~l~sgs~-dg----~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~---- 503 (515)
..+ ...+.. ++|+|+|+.|+.++. ++ .|+.||..+++ ...+. |...+.+++|+|||++++.+..
T Consensus 351 ~~~---~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~--~~~~~~~~~~spdg~~l~~~~~~~~~ 424 (706)
T 2z3z_A 351 TKG---EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT--PESGMHRTQLSPDGSAIIDIFQSPTV 424 (706)
T ss_dssp CCS---SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC--CSSSEEEEEECTTSSEEEEEEECSSC
T ss_pred CCC---CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc--CCCceEEEEECCCCCEEEEEecCCCC
Confidence 543 333665 799999998766554 44 67777887776 33343 6678999999999998876532
Q ss_pred --CEEEEcCCC
Q psy6127 504 --NMAFWIPTL 512 (515)
Q Consensus 504 --dv~iW~~~~ 512 (515)
.+.+|+++.
T Consensus 425 p~~i~l~d~~~ 435 (706)
T 2z3z_A 425 PRKVTVTNIGK 435 (706)
T ss_dssp SCEEEEEESSS
T ss_pred CcEEEEEECCC
Confidence 288998764
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.2e-24 Score=243.66 Aligned_cols=332 Identities=12% Similarity=0.041 Sum_probs=244.9
Q ss_pred CCcchhh-ccccccccCCce-eEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccc-----------cC
Q psy6127 155 GSWDFEL-LHSLSSLESPHF-VSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRE-----------NT 221 (515)
Q Consensus 155 ~~wd~~~-~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~-----------h~ 221 (515)
.+|.+.. +.....+..+.. ...+++++++. +++. .+..+.+|+. ...+ +..+.+ |.
T Consensus 227 ~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~------la~~--~~~~i~~~d~--~~~~-l~~l~~~~~~~~~~~~~~~ 295 (1045)
T 1k32_A 227 QIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRR------ILFS--KGGSIYIFNP--DTEK-IEKIEIGDLESPEDRIISI 295 (1045)
T ss_dssp EEEEEETTSCSCEECCCCCSSCEEEEEESSSC------EEEE--ETTEEEEECT--TTCC-EEECCCCCCCBCCSEEEEC
T ss_pred EEEEEeCCCCcceEecCCCCcceeeEcCCCCE------EEEE--eCCEEEEecC--CceE-eeeeccCcccccccccccc
Confidence 8888654 445555555533 35566666654 4433 2567888873 2222 224444 45
Q ss_pred CcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCC-ceeEEEEecCCCeEEEEEeeCCCeEE-EEECCCCe
Q psy6127 222 DKINSLDYS-SDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKY-GVDLIKFTHSKTTAIHASTKVDATLR-YLSLHDNK 298 (515)
Q Consensus 222 ~~I~~l~~s-pd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~s~~~d~~v~-vwd~~~~~ 298 (515)
..+.+++|+ |||++|++++ ++.+.+|+..+++.. .+..|.. .+..++|+ +++.+++++ .++.+. +||+.+++
T Consensus 296 ~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s--~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 296 PSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT--REGDFLGIYDYRTGK 370 (1045)
T ss_dssp GGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE--TTEEEEEEEETTTCC
T ss_pred cccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE--CCCceEEEEECCCCC
Confidence 679999999 9999999988 789999999877654 4666777 89999999 988888776 477888 99998876
Q ss_pred eeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECCCCCEEEEEECCC-------
Q psy6127 299 YVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDPEGLAFAIGVNSD------- 370 (515)
Q Consensus 299 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg------- 370 (515)
... +.+|...+..++|+|||+.|++++.++.|++||+.+++..... .+...+..++|+|||+++++++.++
T Consensus 371 ~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 371 AEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 449 (1045)
T ss_dssp EEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred ceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence 554 4478889999999999999999999999999999999887777 4555678999999999999887654
Q ss_pred ---cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce-------eEE--------
Q psy6127 371 ---SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNC-------VQS-------- 432 (515)
Q Consensus 371 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~-------~~~-------- 432 (515)
.|++||+.+++ ......+...+..++|+|+|++|++++.++....|+...... +..
T Consensus 450 ~~~~i~l~d~~~g~------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1045)
T 1k32_A 450 VMQAIHVYDMEGRK------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 523 (1045)
T ss_dssp CEEEEEEEETTTTE------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCC
T ss_pred CCCeEEEEECCCCc------EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCC
Confidence 89999998642 222334556678899999999999999888777776543221 000
Q ss_pred ------------------eec-------cccCCCCCEEEEEecCCCEEEE-------------EeCCCcEEEEECCCCeE
Q psy6127 433 ------------------LSG-------VLNNNASPLEATFTPDSQFVAS-------------GSTDGQVHIWNAERGYK 474 (515)
Q Consensus 433 ------------------~~~-------~~~~~~~i~~~~~sp~g~~l~s-------------gs~dg~I~iwd~~~~~~ 474 (515)
+.+ ...+...+..++++|||+++++ ......+++||+.+++.
T Consensus 524 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~ 603 (1045)
T 1k32_A 524 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV 603 (1045)
T ss_dssp CGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE
T ss_pred CccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcE
Confidence 000 0112234788999999987775 12345788999998875
Q ss_pred EEEEcCCCCCCeEEEEECCCCCEEEEeeCC-EEEEcCCCCC
Q psy6127 475 VCVLDGDHPSAVQSLQFNPKYHMLASACSN-MAFWIPTLSA 514 (515)
Q Consensus 475 ~~~~~~~h~~~V~~l~~sp~~~~las~~~d-v~iW~~~~~~ 514 (515)
.... ..+.+++|+|||+.|++++++ +++|++....
T Consensus 604 ~~l~-----~~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 604 TEVK-----NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp EEEE-----EEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred EEee-----cCcceEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence 4333 458899999999999988754 9999987653
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=3.7e-25 Score=210.38 Aligned_cols=254 Identities=14% Similarity=0.149 Sum_probs=195.4
Q ss_pred EEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC-CeeeEEecCC-CCCeEEEEE
Q psy6127 238 SCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD-NKYVRYFPGH-VRKVSSLNL 315 (515)
Q Consensus 238 sgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~-~~~~~~~~~h-~~~v~~l~~ 315 (515)
.++.|++|++||+.+++.. .+..|...+.+++|+|+++.+++++ ++.|++||+.+ ++.......| ...+.+++|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS---EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE---TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc---CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 3467899999999988766 4555788999999999999888764 88999999999 8877776666 377899999
Q ss_pred cCCCCEEEEEeC--CCcEEEE--EcCCCCeEEEEecCCCeeEEEECCCCCEEE-EEECCCcEEEEEeecCCCCCceeeec
Q psy6127 316 SPVDDSFISGSY--DKTVRVW--DLRQPNNVGMIQLSGNKPIAAYDPEGLAFA-IGVNSDSIKLYDVRSYDKGPFASFKC 390 (515)
Q Consensus 316 ~~~~~~l~s~s~--dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~ 390 (515)
+|+++.|++++. ++...+| +..+++ ...+.....+..++|+|+++.++ ++..++.+++|+++.... ....
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~----~~~~ 167 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG----VETR 167 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC----CEEE
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC----cceE
Confidence 999999999983 3445555 555554 34444445588899999999887 677899999999865322 1222
Q ss_pred CCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECC-CCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC-------
Q psy6127 391 PGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAF-NGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD------- 461 (515)
Q Consensus 391 ~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d------- 461 (515)
...+...+.+++|+|+++++++++ .++.+++|++. .+.....+..+. ..+..++|+|+|++|++++.+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA---YGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS---EEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC---cccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 334566789999999999888776 58899999886 455555555433 347889999999999888765
Q ss_pred ----CcEEEEECCCCeE--EEEEcCCCCCCeEEEEECCCCCEEEEeeCC
Q psy6127 462 ----GQVHIWNAERGYK--VCVLDGDHPSAVQSLQFNPKYHMLASACSN 504 (515)
Q Consensus 462 ----g~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~las~~~d 504 (515)
+.|++||+.+++. +..+.+ |...+.+++|+|+++.|++++.+
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLFDLFG-GQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEEEEEE-STTTSCSCCBCTTSSEEEEEEEC
T ss_pred ccCceEEEEEecCCCCceeeeccCC-CCcccccceECCCCCEEEEEEec
Confidence 5699999988765 444445 78889999999999999887643
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=1.9e-24 Score=210.57 Aligned_cols=272 Identities=14% Similarity=0.159 Sum_probs=193.1
Q ss_pred EEEEEeCCCeEEEEECC-CC--eeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC--CCe--eeEEecCCC
Q psy6127 235 LLISCSDDDQIIIYDCE-QG--TSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH--DNK--YVRYFPGHV 307 (515)
Q Consensus 235 ~lasgs~dg~i~iwd~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~--~~~--~~~~~~~h~ 307 (515)
.+++++.|+.|++|++. ++ +....+ .+...+.+++|+|+++.+++++ ..++.|.+|++. +++ .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGV-RPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEE-TTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEee-cCCCeEEEEEecCCCCceeeccccccCC
Confidence 34444789999999995 33 223333 4567789999999999888776 234999999997 554 344555444
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC---CCCeEEEEecCCCeeEEEECCCCCEEEEEE-CCCcEEEEEeec-CC
Q psy6127 308 RKVSSLNLSPVDDSFISGSY-DKTVRVWDLR---QPNNVGMIQLSGNKPIAAYDPEGLAFAIGV-NSDSIKLYDVRS-YD 381 (515)
Q Consensus 308 ~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d~~~-~~ 381 (515)
.+..++|+|+++++++++. ++.|.+||+. ..+....+.....+..++|+|+++.+++++ .++.|.+||+.. +.
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 7899999999998877665 8899999994 344455555556688899999999888887 899999999986 32
Q ss_pred CCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCC--Cce--eEEeeccc---cCCCCCEEEEEecCCC
Q psy6127 382 KGPFASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFN--GNC--VQSLSGVL---NNNASPLEATFTPDSQ 453 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~--~~~--~~~~~~~~---~~~~~i~~~~~sp~g~ 453 (515)
................+..++|+|+++++++++ .++.+.+|++.. ++. ........ .....+..++|+|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 111110011223345678899999999887665 789999999953 432 22222111 1123466899999999
Q ss_pred EEEEE-eCCCcEEEEECC--C--CeEEEEEcCCCCCCeEEEEECCCCCEEEEeeC---CEEEEcCC
Q psy6127 454 FVASG-STDGQVHIWNAE--R--GYKVCVLDGDHPSAVQSLQFNPKYHMLASACS---NMAFWIPT 511 (515)
Q Consensus 454 ~l~sg-s~dg~I~iwd~~--~--~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~---dv~iW~~~ 511 (515)
+|+++ ..++.|.+||+. + .+.+..+.. +. .+.+++|+|+++++++++. .+.+|+++
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPT-ET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-SS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCCCCceEEeeeecC-CC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 88754 478999999998 3 345555554 33 3889999999998887762 39999665
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=3.1e-24 Score=208.53 Aligned_cols=265 Identities=10% Similarity=0.049 Sum_probs=205.3
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeEecCCCC--ceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecC-C----
Q psy6127 234 SLLISCSDDDQIIIYDCEQGTSKNTINSKKY--GVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPG-H---- 306 (515)
Q Consensus 234 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~-h---- 306 (515)
+++++++.++.|++||..+++.+..+..... .+..++|+|+++.++++. ..++.|.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~-~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV-NKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE-TTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEe-CCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 4789999999999999999998888764432 478999999998877765 4689999999999988876653 2
Q ss_pred CCCeEEEEEcCCCCEEEEEe------------CCCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEECCCcEEE
Q psy6127 307 VRKVSSLNLSPVDDSFISGS------------YDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKL 374 (515)
Q Consensus 307 ~~~v~~l~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 374 (515)
...+..++|+|+++.+++++ .++.|.+||+.+++....+.....+..++|+|++++++++ ++.+.+
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 22677899999999988886 5799999999999888888776678889999999988887 689999
Q ss_pred EEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCC------------------------cEEEEECCCCcee
Q psy6127 375 YDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS------------------------IIRLFDAFNGNCV 430 (515)
Q Consensus 375 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg------------------------~i~iwd~~~~~~~ 430 (515)
||+.+++. ...+.. ..... .+.|+|++++++..+.++ .|.+||..+++..
T Consensus 159 ~d~~~~~~--~~~~~~-~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 159 MDPEAGTL--VEDKPI-QSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp EETTTTEE--EEEECS-TTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred EECCCCcE--eeeeec-cccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 99987541 111111 11112 237899998776554332 4689999998875
Q ss_pred EEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeC--CEEEE
Q psy6127 431 QSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS--NMAFW 508 (515)
Q Consensus 431 ~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~--dv~iW 508 (515)
.+.. ......+..++|+|+|++++++ ++.|++||+.+++.+..+.. ...+.+++|+|+++++++++. .+++|
T Consensus 233 -~~~~-~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 233 -MREV-RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp -EEEE-EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred -Eeec-CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEE
Confidence 3322 1223347889999999999988 78999999999999888864 356789999999998887764 39999
Q ss_pred cCCCC
Q psy6127 509 IPTLS 513 (515)
Q Consensus 509 ~~~~~ 513 (515)
+++..
T Consensus 307 d~~~~ 311 (337)
T 1pby_B 307 DAETL 311 (337)
T ss_dssp ETTTC
T ss_pred ECcCC
Confidence 98754
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1e-23 Score=204.80 Aligned_cols=273 Identities=12% Similarity=0.130 Sum_probs=200.4
Q ss_pred eeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCee-eeEecCCCCceeEEE
Q psy6127 193 HSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSD-DDQIIIYDCEQGTS-KNTINSKKYGVDLIK 270 (515)
Q Consensus 193 ~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~-dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~ 270 (515)
.+...++.+.+|| ..+++....+..+...+ +++|+|||+++++++. ++.|.+||..+++. ...+..+..+..+++
T Consensus 14 v~~~~~~~v~~~d--~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 90 (331)
T 3u4y_A 14 VVEQHLRRISFFS--TDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVD 90 (331)
T ss_dssp EEEGGGTEEEEEE--TTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEE
T ss_pred EEecCCCeEEEEe--CcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceE
Confidence 3556667899998 66777777777777777 9999999997777665 89999999999887 777777766666699
Q ss_pred EecCCCeEEEEEeeCCC--eEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEE-EEeCCCc-EEEEEcCCCCeE----
Q psy6127 271 FTHSKTTAIHASTKVDA--TLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKT-VRVWDLRQPNNV---- 342 (515)
Q Consensus 271 ~~~~~~~l~~~s~~~d~--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~-i~iwd~~~~~~~---- 342 (515)
|+|+++.++ ++...++ .|.+||+.+++.+..+..+ ....+++|+|+|++++ +...++. |.+|++.....+
T Consensus 91 ~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~ 168 (331)
T 3u4y_A 91 ITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG 168 (331)
T ss_dssp ECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred ECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence 999999888 4322223 9999999999988877644 4569999999998555 4456688 999999865433
Q ss_pred -EEEecCCCeeEEEECCCCCEEEEEE-CCCcEEEEEeecCCCCC-ceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCc
Q psy6127 343 -GMIQLSGNKPIAAYDPEGLAFAIGV-NSDSIKLYDVRSYDKGP-FASFKCPGERGCEWTGLKFSPDGKLILVST-NGSI 418 (515)
Q Consensus 343 -~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~ 418 (515)
..+........++|+|+|++++++. .++.|.+||+.+++... ...+. ....+..++|+|+|+++++++ .++.
T Consensus 169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEECSSEEE
T ss_pred CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEEEcCCCE
Confidence 2233445578899999999765554 68899999998755310 12222 224556899999999887665 4778
Q ss_pred EEEEECCCCce--eEEeecc----ccCCCCCEEEEEecCCCEEEEEe-CCCcEEEEECCCCeE
Q psy6127 419 IRLFDAFNGNC--VQSLSGV----LNNNASPLEATFTPDSQFVASGS-TDGQVHIWNAERGYK 474 (515)
Q Consensus 419 i~iwd~~~~~~--~~~~~~~----~~~~~~i~~~~~sp~g~~l~sgs-~dg~I~iwd~~~~~~ 474 (515)
|.+||..+++. +..+... .........++|+|+|++|++++ .++.|.+||+.....
T Consensus 245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 99999999876 3333322 11111235689999999887665 457999999986553
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=6.4e-25 Score=236.64 Aligned_cols=294 Identities=11% Similarity=0.111 Sum_probs=211.6
Q ss_pred CCCcEEEEccceeeeeEeeeeccccCC---cEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeeeeEec---
Q psy6127 196 SSRTITKCSENLVRSYRVAKVFRENTD---KINSLDYSSDGSLLISCSDD---------DQIIIYDCEQGTSKNTIN--- 260 (515)
Q Consensus 196 ~~~~~i~~wd~~~~~~~~~~~~~~h~~---~I~~l~~spd~~~lasgs~d---------g~i~iwd~~~~~~~~~~~--- 260 (515)
+.++.+++|+ ..++++...+.+|.. .|.+++|||||++|++++.+ +.+.+||+.+++. ..+.
T Consensus 34 ~~dg~i~~~d--~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~ 110 (723)
T 1xfd_A 34 EQKGTVRLWN--VETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPE 110 (723)
T ss_dssp CSSSCEEEBC--GGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTT
T ss_pred eCCCCEEEEE--CCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCc
Confidence 4567899999 777888788888775 49999999999999999875 7888999998876 3333
Q ss_pred CCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCe------------------EEEEEcCCCCEE
Q psy6127 261 SKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKV------------------SSLNLSPVDDSF 322 (515)
Q Consensus 261 ~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v------------------~~l~~~~~~~~l 322 (515)
.+...+..++|+|+|+.+++++ ++.|++||+.+++.......+...+ .+++|+|||+.|
T Consensus 111 ~~~~~~~~~~~SPdG~~la~~~---~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l 187 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKGQQLIFIF---ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL 187 (723)
T ss_dssp CCSCCCSBCCBCSSTTCEEEEE---TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred cccccccccEECCCCCEEEEEE---CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEE
Confidence 3444588999999999998886 5899999999988777666544433 789999999999
Q ss_pred EEEeCCC----------------------------------cEEEEEcCCCCeEEEEec-------CCCeeEEEECCCCC
Q psy6127 323 ISGSYDK----------------------------------TVRVWDLRQPNNVGMIQL-------SGNKPIAAYDPEGL 361 (515)
Q Consensus 323 ~s~s~dg----------------------------------~i~iwd~~~~~~~~~~~~-------~~~~~~~~~s~~~~ 361 (515)
++++.|+ .|++||+.+++....+.. ...+..++|+|||+
T Consensus 188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~ 267 (723)
T 1xfd_A 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK 267 (723)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe
Confidence 9987653 799999998886555532 23467899999999
Q ss_pred EEEEEECC----CcEEEEEeecCCCCCceeeecCCCCCcCe----EEEEEcCCCCEEEE--EECCC------cEEEEE-C
Q psy6127 362 AFAIGVNS----DSIKLYDVRSYDKGPFASFKCPGERGCEW----TGLKFSPDGKLILV--STNGS------IIRLFD-A 424 (515)
Q Consensus 362 ~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i----~~l~~sp~~~~l~~--~s~dg------~i~iwd-~ 424 (515)
++++.... ..|++||+.+++... ... ..+...+ ..++|+|||+.|+. +..++ .|++|| .
T Consensus 268 ~l~~~~~~~~~~~~i~~~d~~~g~~~~--~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~ 343 (723)
T 1xfd_A 268 VAVTWLNRAQNVSILTLCDATTGVCTK--KHE--DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ 343 (723)
T ss_dssp EEEEEEETTSCEEEEEEEETTTCCEEE--EEE--EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSS
T ss_pred EEEEEEcCCCCeEEEEEEeCCCCcceE--EEE--eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEecc
Confidence 88776533 579999988754211 111 1111222 36899999997775 44666 577777 3
Q ss_pred CCCc--eeEEeeccccCCCCCEE-EEEecCCCEEEEEeCC---CcEEEEECCCC--eEEEEEcCC--CCCCeEEEEECCC
Q psy6127 425 FNGN--CVQSLSGVLNNNASPLE-ATFTPDSQFVASGSTD---GQVHIWNAERG--YKVCVLDGD--HPSAVQSLQFNPK 494 (515)
Q Consensus 425 ~~~~--~~~~~~~~~~~~~~i~~-~~~sp~g~~l~sgs~d---g~I~iwd~~~~--~~~~~~~~~--h~~~V~~l~~sp~ 494 (515)
..+. +...+... ...+.. ++|+|||+.|+..+.+ +.+++|++... .....+... |...+..++|+||
T Consensus 344 ~~~~~~~~~~l~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spd 420 (723)
T 1xfd_A 344 PNSSNDNIQSITSG---DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHS 420 (723)
T ss_dssp CCSSSCCCCBSCCS---SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTT
T ss_pred CCCCccceeEeecC---CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCC
Confidence 4443 13444321 122444 6999999999766554 78999998643 233334321 5667899999999
Q ss_pred CCEEEEee
Q psy6127 495 YHMLASAC 502 (515)
Q Consensus 495 ~~~las~~ 502 (515)
|++++...
T Consensus 421 g~~l~~~~ 428 (723)
T 1xfd_A 421 MDFFLLKC 428 (723)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99888753
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=4.1e-24 Score=203.18 Aligned_cols=258 Identities=13% Similarity=0.141 Sum_probs=191.9
Q ss_pred eCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeeEecCC-CCceeEEEE
Q psy6127 194 SRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQ-GTSKNTINSK-KYGVDLIKF 271 (515)
Q Consensus 194 s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~ 271 (515)
+.+.+..+.+|+ ....+.. .+..|...|.+++|+|||++|++++ ++.|++||+.+ ++.......+ ...+.+++|
T Consensus 17 ~~~~~~~i~~~d--~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFN--IRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEE--TTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEe--CCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 456778899998 5555544 4567899999999999999999987 78999999998 8777666555 367899999
Q ss_pred ecCCCeEEEEEeeCC--CeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEc--CCCCeEEEEe
Q psy6127 272 THSKTTAIHASTKVD--ATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDL--RQPNNVGMIQ 346 (515)
Q Consensus 272 ~~~~~~l~~~s~~~d--~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~--~~~~~~~~~~ 346 (515)
+|+++.+++++...+ ..|..++..+++ ...+..+ ..+..++|+|+++.|+ +++.|+.+++|++ .+++......
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence 999999888763333 455555555554 3444433 3489999999999777 7888999999985 4455444445
Q ss_pred cCCCeeEEEECCCCCEEEEEE-CCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC---------
Q psy6127 347 LSGNKPIAAYDPEGLAFAIGV-NSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG--------- 416 (515)
Q Consensus 347 ~~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d--------- 416 (515)
....+..++|+|+++.+++++ .++.+++|++..... .......+...+..++|+|+|++|++++.+
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS----SVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS----CEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCC----CcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 556688999999999888776 589999999974321 222334455678899999999999988765
Q ss_pred --CcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCC
Q psy6127 417 --SIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDG 462 (515)
Q Consensus 417 --g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg 462 (515)
+.|++||+.+++...... ...+...+..++|+|+|++|++++.+.
T Consensus 247 ~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVETLFD-LFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEEETTSCSCEEEEE-EEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CceEEEEEecCCCCceeeec-cCCCCcccccceECCCCCEEEEEEecc
Confidence 569999998886543332 112334488899999999998887653
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=6.7e-25 Score=236.44 Aligned_cols=286 Identities=13% Similarity=0.120 Sum_probs=207.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCC---ceeEEEEecCCCeEEEEEee-------CCCeEEEE
Q psy6127 223 KINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKY---GVDLIKFTHSKTTAIHASTK-------VDATLRYL 292 (515)
Q Consensus 223 ~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~s~~-------~d~~v~vw 292 (515)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .+..++|+|||+.+++++.. .++.+++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999998876 7899999999999988888877765 49999999999999888631 13789999
Q ss_pred ECCCCeee--EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEec-CCC------------------e
Q psy6127 293 SLHDNKYV--RYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQL-SGN------------------K 351 (515)
Q Consensus 293 d~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~------------------~ 351 (515)
|+.+++.. ....+|...+..++|+|||+.|+.++. +.|++||+.+++....... ... +
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 99988762 222345556899999999999999886 7999999999887766543 222 2
Q ss_pred eEEEECCCCCEEEEEECCC----------------------------------cEEEEEeecCCCCCceeeec---CCCC
Q psy6127 352 PIAAYDPEGLAFAIGVNSD----------------------------------SIKLYDVRSYDKGPFASFKC---PGER 394 (515)
Q Consensus 352 ~~~~~s~~~~~l~~g~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~---~~~~ 394 (515)
..++|+|||+.|++++.++ .|++||+.+++.. ..+.. ...+
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~--~~l~~~~~~~~~ 253 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD--LEMMPPDDPRMR 253 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC--EECCCCCCGGGS
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee--EEeeCCccCCCc
Confidence 6899999999999987543 7889998775421 11111 0112
Q ss_pred CcCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCCceeEEeeccccCC-CC-CEEEEEecCCCEEEE--EeCCC----
Q psy6127 395 GCEWTGLKFSPDGKLILVSTN----GSIIRLFDAFNGNCVQSLSGVLNNN-AS-PLEATFTPDSQFVAS--GSTDG---- 462 (515)
Q Consensus 395 ~~~i~~l~~sp~~~~l~~~s~----dg~i~iwd~~~~~~~~~~~~~~~~~-~~-i~~~~~sp~g~~l~s--gs~dg---- 462 (515)
...+..++|+|||+++++.+. +..|++||+.++++...+..+.... .. ...++|+|||+.|+. +..++
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 567889999999998877653 3579999999998776654332111 10 137899999997765 44666
Q ss_pred --cEEEEE-CCCCe--EEEEEcCCCCCCeEE-EEECCCCCEEEEee-----CCEEEEcCCCC
Q psy6127 463 --QVHIWN-AERGY--KVCVLDGDHPSAVQS-LQFNPKYHMLASAC-----SNMAFWIPTLS 513 (515)
Q Consensus 463 --~I~iwd-~~~~~--~~~~~~~~h~~~V~~-l~~sp~~~~las~~-----~dv~iW~~~~~ 513 (515)
.|++|| ..+++ +...+.. +...+.. ++|+|||+.|+..+ +..++|+++..
T Consensus 334 ~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 334 FYHITVSSSQPNSSNDNIQSITS-GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCC-SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred eeEEEEEeccCCCCccceeEeec-CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 577777 34444 1444443 3344554 69999999987654 34889998653
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=4.4e-24 Score=207.41 Aligned_cols=273 Identities=11% Similarity=0.056 Sum_probs=209.8
Q ss_pred eeCCCCcEEEEccceeeeeEeeeeccccC-C-cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeeEecCCC-----C
Q psy6127 193 HSRSSRTITKCSENLVRSYRVAKVFRENT-D-KINSLDYSSDGSLLI-SCSDDDQIIIYDCEQGTSKNTINSKK-----Y 264 (515)
Q Consensus 193 ~s~~~~~~i~~wd~~~~~~~~~~~~~~h~-~-~I~~l~~spd~~~la-sgs~dg~i~iwd~~~~~~~~~~~~~~-----~ 264 (515)
+++..++.+.+|| ..+++....+.... . .+.+++|+|+|++++ +++.++.|.+||+.+++.+..+.... .
T Consensus 5 v~~~~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 5 LAPARPDKLVVID--TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEETTTEEEEEE--TTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEcCCCCeEEEEE--CCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 3566678899998 66677776665332 2 488999999998764 55567899999999998887765422 2
Q ss_pred ceeEEEEecCCCeEEEEEee----------CCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy6127 265 GVDLIKFTHSKTTAIHASTK----------VDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW 334 (515)
Q Consensus 265 ~v~~~~~~~~~~~l~~~s~~----------~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 334 (515)
.+..++|+|+++.++++... .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++ ++.|.+|
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 57789999999988877522 379999999999988877764 4567889999999988887 6899999
Q ss_pred EcCCCCeEEEEecCCCeeEEEECCCCCEEEEEECCC------------------------cEEEEEeecCCCCCceeeec
Q psy6127 335 DLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSD------------------------SIKLYDVRSYDKGPFASFKC 390 (515)
Q Consensus 335 d~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg------------------------~i~i~d~~~~~~~~~~~~~~ 390 (515)
|+.+++....+........+.|+|++..++..+..+ .|.+||+.+++.. ...
T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~- 235 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MRE- 235 (337)
T ss_dssp ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---EEE-
T ss_pred ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---Eee-
Confidence 999998887775543223347899988766544332 4678888775421 111
Q ss_pred CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 391 PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 391 ~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
...+...+.+++|+|++++++++ ++.|++||+.+++.+..+... ..+.+++|+|+|++|++++.++.|++||+.
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS----SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC----CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 12334567789999999999988 689999999999887777643 237899999999999999999999999999
Q ss_pred CCeEEEEEcC
Q psy6127 471 RGYKVCVLDG 480 (515)
Q Consensus 471 ~~~~~~~~~~ 480 (515)
+++.+..+..
T Consensus 310 ~~~~~~~~~~ 319 (337)
T 1pby_B 310 TLEKKGQVDL 319 (337)
T ss_dssp TCCEEEEEEC
T ss_pred CCcEEEEEEc
Confidence 9999888865
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=2.3e-22 Score=197.94 Aligned_cols=288 Identities=11% Similarity=0.111 Sum_probs=197.1
Q ss_pred CCCcEEEEccceeeee--EeeeeccccCCcEEEEEEcCCCCEEEEEeCC----CeEEEEECCC--Cee--eeEecCCCCc
Q psy6127 196 SSRTITKCSENLVRSY--RVAKVFRENTDKINSLDYSSDGSLLISCSDD----DQIIIYDCEQ--GTS--KNTINSKKYG 265 (515)
Q Consensus 196 ~~~~~i~~wd~~~~~~--~~~~~~~~h~~~I~~l~~spd~~~lasgs~d----g~i~iwd~~~--~~~--~~~~~~~~~~ 265 (515)
+.+.-+.+|.-...++ +.+..+ |...+..++|+|||++|++++.+ +.|.+|++.. ++. +.....+...
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ 101 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD 101 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred CCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence 3445566665212223 333333 77888899999999999999986 7999998865 433 3344445556
Q ss_pred eeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEe------cC--------CCCCeEEEEEcCCCCEEEEEe-CCCc
Q psy6127 266 VDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYF------PG--------HVRKVSSLNLSPVDDSFISGS-YDKT 330 (515)
Q Consensus 266 v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~------~~--------h~~~v~~l~~~~~~~~l~s~s-~dg~ 330 (515)
...+++ +++.++++. ..++.+.+|++.....+... .+ +...+.+++|+|+|+++++++ .++.
T Consensus 102 p~~~~~--dg~~l~~~~-~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 178 (361)
T 3scy_A 102 PCYLTT--NGKNIVTAN-YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQ 178 (361)
T ss_dssp EEEEEE--CSSEEEEEE-TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTE
T ss_pred cEEEEE--CCCEEEEEE-CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCE
Confidence 777777 777777665 46899999999754332211 11 233468899999999766655 4889
Q ss_pred EEEEEcCCCCe--------------EEEEecCCCeeEEEECCCCCEEEEEE-CCCcEEEEEeecCCCCCceeeecCCCCC
Q psy6127 331 VRVWDLRQPNN--------------VGMIQLSGNKPIAAYDPEGLAFAIGV-NSDSIKLYDVRSYDKGPFASFKCPGERG 395 (515)
Q Consensus 331 i~iwd~~~~~~--------------~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 395 (515)
|.+|++..... .........+..++|+|+|++++++. .++.|.+|++.++.............+.
T Consensus 179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~ 258 (361)
T 3scy_A 179 IHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNA 258 (361)
T ss_dssp EEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCC
T ss_pred EEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCC
Confidence 99999875441 11223344578899999999888777 6899999999864322222233333334
Q ss_pred cCeEEEEEcCCCCEEEEEECC--CcEEEEECC--CCc--eeEEeeccccCCCCCEEEEEecCCCEEEEEe-CCCcEEEE-
Q psy6127 396 CEWTGLKFSPDGKLILVSTNG--SIIRLFDAF--NGN--CVQSLSGVLNNNASPLEATFTPDSQFVASGS-TDGQVHIW- 467 (515)
Q Consensus 396 ~~i~~l~~sp~~~~l~~~s~d--g~i~iwd~~--~~~--~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs-~dg~I~iw- 467 (515)
.....++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|+|+|++|++++ .++.|.+|
T Consensus 259 ~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~----g~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 259 QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT----GIHPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC----SSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC----CCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 456799999999999877765 899999985 444 2333332 23478999999999988887 67889996
Q ss_pred -ECCCCeEEEEEcCCCCCCeEEEEEC
Q psy6127 468 -NAERGYKVCVLDGDHPSAVQSLQFN 492 (515)
Q Consensus 468 -d~~~~~~~~~~~~~h~~~V~~l~~s 492 (515)
|..+++........+...+.|++|.
T Consensus 335 ~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 335 RDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp ECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EECCCCcEeecceeeeCCCCeEEEEc
Confidence 5557776654433245678899886
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=1.3e-23 Score=220.62 Aligned_cols=261 Identities=13% Similarity=0.065 Sum_probs=191.2
Q ss_pred cCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeeEecCCC-CceeEEEEecCCCeEEEEEee--CCCeEEEEECC
Q psy6127 220 NTDKINSLDYSSDGSLLISCSD-DDQIIIYDCEQGTSKNTINSKK-YGVDLIKFTHSKTTAIHASTK--VDATLRYLSLH 295 (515)
Q Consensus 220 h~~~I~~l~~spd~~~lasgs~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~~--~d~~v~vwd~~ 295 (515)
+..+|++++|+|||++||+++. ||+++||++.+++.. .+..+. ..+..++|+|+ + +++.+.. .+....+|.+.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-R-VILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-E-EEEEEECSTTSCCEEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-e-EEEEeccCCCCcceEEEEEe
Confidence 3568999999999999999887 999999999766554 455454 68999999998 4 4443321 24545555443
Q ss_pred C---CeeeEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEECC--
Q psy6127 296 D---NKYVRYFPGHVRKVSSLNLSPVDD-SFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNS-- 369 (515)
Q Consensus 296 ~---~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-- 369 (515)
. +... .+..+. .+...+|+|+++ .+++.+.++.+.+||+.+++......... ..++|+|||+++++++.+
T Consensus 97 ~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEET
T ss_pred ccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCC
Confidence 2 2222 333222 344668888886 33344444555699999987766655444 889999999999988776
Q ss_pred --CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCC--cEEEEECCCCceeEEeeccccCCCCCEE
Q psy6127 370 --DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS--IIRLFDAFNGNCVQSLSGVLNNNASPLE 445 (515)
Q Consensus 370 --g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 445 (515)
+.|++||+.+++. . ....+...+..++|||||++|+++..++ .|++||+.+++.. .+..+. ..+..
T Consensus 173 ~~~~i~~~d~~~g~~-----~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~---~~~~~ 242 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGL-----R-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS---KDFSS 242 (582)
T ss_dssp TEEEEEEEETTTCCC-----E-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC---SHHHH
T ss_pred CCeEEEEEcCCCCCc-----e-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC---cChhh
Confidence 7899999887542 1 2234556788999999999999888888 8999999998876 544432 22444
Q ss_pred EE--------EecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC
Q psy6127 446 AT--------FTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN 504 (515)
Q Consensus 446 ~~--------~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d 504 (515)
++ |+|||.++++++.||.+++|++ |+... . +.+.|.+++|+ +++++++++.+
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~-~~~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---A-PQGNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---C-CSSEEEEEEEE-TTEEEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---c-CCCceEEEEec-CCEEEEEEcCC
Confidence 55 9999999999999999999999 76655 2 45779999999 99998887754
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=2.7e-22 Score=196.33 Aligned_cols=254 Identities=13% Similarity=0.150 Sum_probs=177.7
Q ss_pred cccCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCe--eeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEE
Q psy6127 218 RENTDKINSLDYSSDGSLLISCSD---DDQIIIYDCEQGT--SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYL 292 (515)
Q Consensus 218 ~~h~~~I~~l~~spd~~~lasgs~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vw 292 (515)
..+...+..++|+|||+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|+++.+++++ ..++.+.+|
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~-~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSAN-YHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEE-TTTTEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEe-CCCCEEEEE
Confidence 44567788899999999 555554 6899999998765 3444455677889999999999888776 368999999
Q ss_pred ECCC-C--eeeEEecC---------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCCeEEE--E--ecCCCeeEEE
Q psy6127 293 SLHD-N--KYVRYFPG---------HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLR-QPNNVGM--I--QLSGNKPIAA 355 (515)
Q Consensus 293 d~~~-~--~~~~~~~~---------h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~--~--~~~~~~~~~~ 355 (515)
++.. + +.+..+.. +...+.+++|+|+|+.+++...++.|.+||+. +++.... + .....+..++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 9963 2 33333321 12358899999999966666678899999998 4543322 2 2233577899
Q ss_pred ECCCCCEEEE-EECCCcEEEEEeecCCCCC--ceeeecCCC---CCcCeEEEEEcCCCCEEE-EEECCCcEEEEECCCC-
Q psy6127 356 YDPEGLAFAI-GVNSDSIKLYDVRSYDKGP--FASFKCPGE---RGCEWTGLKFSPDGKLIL-VSTNGSIIRLFDAFNG- 427 (515)
Q Consensus 356 ~s~~~~~l~~-g~~dg~i~i~d~~~~~~~~--~~~~~~~~~---~~~~i~~l~~sp~~~~l~-~~s~dg~i~iwd~~~~- 427 (515)
|+|+|+++++ +..++.+.+|++....... ......... ....+..++|+|+|++|+ +...++.|.+|++...
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 9999997666 4568899999998522111 111111111 114577899999999885 4556899999998733
Q ss_pred --ceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC-CcEEEE--ECCCCeEEE
Q psy6127 428 --NCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD-GQVHIW--NAERGYKVC 476 (515)
Q Consensus 428 --~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d-g~I~iw--d~~~~~~~~ 476 (515)
+.+..+.. +...+..++|+|||++|++++.+ +.|.+| |..+|+...
T Consensus 274 ~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 274 HLTLIQQIST---EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CEEEEEEEEC---SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred cEEEeEEEec---CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 33333333 23347899999999998888754 899999 556676553
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=3.1e-22 Score=195.89 Aligned_cols=251 Identities=10% Similarity=0.069 Sum_probs=199.1
Q ss_pred CcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeeEecCCCCc---------ee
Q psy6127 198 RTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISC-SDDDQIIIYDCEQGTSKNTINSKKYG---------VD 267 (515)
Q Consensus 198 ~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasg-s~dg~i~iwd~~~~~~~~~~~~~~~~---------v~ 267 (515)
++.+.+|| ..+++....+... ..+..++|+|+|++++.+ ..++.|.+||..+++.+..+..+... +.
T Consensus 68 ~~~v~~~d--~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (353)
T 3vgz_A 68 GGVVYRLD--PVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR 144 (353)
T ss_dssp SEEEEEEC--TTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE
T ss_pred CccEEEEc--CCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc
Confidence 67789998 6667776666543 447889999999966555 55799999999999988888765422 78
Q ss_pred EEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEec
Q psy6127 268 LIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQL 347 (515)
Q Consensus 268 ~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 347 (515)
+++|+|+++.++++....++.|.+||..+++.+..+..+...+.+++|+|+++.+++++.++.|.+||..+++....+..
T Consensus 145 ~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 145 ELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL 224 (353)
T ss_dssp EEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc
Confidence 89999999988887745689999999999999988876667789999999999999999999999999999998877754
Q ss_pred -----CCCeeEEEECCCCCEEEEEEC-CCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEE
Q psy6127 348 -----SGNKPIAAYDPEGLAFAIGVN-SDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIR 420 (515)
Q Consensus 348 -----~~~~~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~ 420 (515)
...+..++|+|+++.+++++. ++.|.+||..+++. ...... .. + ..++|+|++++++++. .++.|.
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~--~~--~-~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI--LAKVAA--PE--S-LAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE--EEEEEC--SS--C-CCEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEEc--CC--C-ceEEECCCCCEEEEEECCCCeEE
Confidence 233567999999998777765 48999999977542 122221 11 1 3699999999777666 689999
Q ss_pred EEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCC
Q psy6127 421 LFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDG 462 (515)
Q Consensus 421 iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg 462 (515)
+||..+++.+..+.... .+..++|+|+|++|+++..++
T Consensus 298 ~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 298 VIDAKSYKVVKTFDTPT----HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEETTTTEEEEEEECCS----EEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCeEEEEEecCC----CCCeEEEcCCCCEEEEEEccc
Confidence 99999999888776432 378999999999887776654
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=3e-23 Score=222.95 Aligned_cols=274 Identities=17% Similarity=0.204 Sum_probs=199.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-eEecCCC-----------------CceeEEEEecCCCeEEEEEeeC
Q psy6127 224 INSLDYSSDGSLLISCSDDDQIIIYDCEQGTSK-NTINSKK-----------------YGVDLIKFTHSKTTAIHASTKV 285 (515)
Q Consensus 224 I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~s~~~ 285 (515)
+..+.|. |+.+++++.|+ | +||+.+++.+ ..+..+. ..+.+++|+|+ ..++++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~--- 99 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT--- 99 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE---
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE---
Confidence 4446777 66777788888 8 9999998873 3333322 46999999999 6666654
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-----CCeEEEEecCCC----------
Q psy6127 286 DATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQ-----PNNVGMIQLSGN---------- 350 (515)
Q Consensus 286 d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~---------- 350 (515)
++.+++||+.+++.... ..+...+.+++|+|||+.|+++ .|+.|++||+.+ ++..........
T Consensus 100 ~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 79999999998876554 4467778999999999999985 689999999998 776654433222
Q ss_pred -----eeEEEECCCCCEEEEEE---------------------------------CCCcEEEEEeecCCCCCceeeecCC
Q psy6127 351 -----KPIAAYDPEGLAFAIGV---------------------------------NSDSIKLYDVRSYDKGPFASFKCPG 392 (515)
Q Consensus 351 -----~~~~~~s~~~~~l~~g~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 392 (515)
+..+.|+|||++|++++ .+..|.+||+.+++. .......
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~---~~~~~~~ 254 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT---VYLQTGE 254 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE---EECCCCS
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce---EeeccCC
Confidence 47899999999999987 446799999976531 1111122
Q ss_pred CCCcCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCCceeEEeecccc--CCCCCEEEEEec--CCCEEEEEeCCCc
Q psy6127 393 ERGCEWTGLKFSPDGKLILVSTNGS-----IIRLFDAFNGNCVQSLSGVLN--NNASPLEATFTP--DSQFVASGSTDGQ 463 (515)
Q Consensus 393 ~~~~~i~~l~~sp~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~--~~~~i~~~~~sp--~g~~l~sgs~dg~ 463 (515)
.+...+..++|+|||++|++++.++ .|++||+.+++....+..... ....+..++|+| ||+++++++.||.
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 4566789999999999999887665 899999999844444332211 111246789999 9999999999999
Q ss_pred EEEEECC-CCeEEEEEcCCCCCCeEE-EEECCCCCEEEEeeC-C----EEEEcCC
Q psy6127 464 VHIWNAE-RGYKVCVLDGDHPSAVQS-LQFNPKYHMLASACS-N----MAFWIPT 511 (515)
Q Consensus 464 I~iwd~~-~~~~~~~~~~~h~~~V~~-l~~sp~~~~las~~~-d----v~iW~~~ 511 (515)
+++|+++ ++..+..+.. |...+.+ ++|+|+++.|+.++. + .+||.++
T Consensus 335 ~~l~~~~~~~~~~~~l~~-~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVTK-GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CEEEEEETTSCEEEECCC-SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred cEEEEEECCCCEEEecCC-CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 9999876 6777777776 7777877 899999988766542 2 4666554
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=5.7e-22 Score=193.96 Aligned_cols=268 Identities=12% Similarity=0.124 Sum_probs=183.7
Q ss_pred CCeEEEEECC--CCeeee-EecCCCCceeEEEEecCCCeEEEEEe-eCCCeEEEEECCCCe--eeEEecCCCCCeEEEEE
Q psy6127 242 DDQIIIYDCE--QGTSKN-TINSKKYGVDLIKFTHSKTTAIHAST-KVDATLRYLSLHDNK--YVRYFPGHVRKVSSLNL 315 (515)
Q Consensus 242 dg~i~iwd~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~-~~d~~v~vwd~~~~~--~~~~~~~h~~~v~~l~~ 315 (515)
++.|.+|+++ +++... ....+...+..++|+|+++ +++++. +.++.|.+||+.+++ .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 4567776654 555433 2334456678899999998 665553 236899999998776 44454557778899999
Q ss_pred cCCCCEEEEEe-CCCcEEEEEcCC-CCe--EEEEecC----------CCeeEEEECCCCCEEEEEECCCcEEEEEeecCC
Q psy6127 316 SPVDDSFISGS-YDKTVRVWDLRQ-PNN--VGMIQLS----------GNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYD 381 (515)
Q Consensus 316 ~~~~~~l~s~s-~dg~i~iwd~~~-~~~--~~~~~~~----------~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~ 381 (515)
+|+|++|++++ .++.|.+||+.. +.. +..+... ..+..++|+|+|+.+++...++.|.+|++....
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 99999888888 689999999963 332 2333222 126679999999966666678899999998321
Q ss_pred CCCceeeecCCCCCcCeEEEEEcCCCCEEEEE-ECCCcEEEEECCC--Cce--eEEeecccc---CCCCCEEEEEecCCC
Q psy6127 382 KGPFASFKCPGERGCEWTGLKFSPDGKLILVS-TNGSIIRLFDAFN--GNC--VQSLSGVLN---NNASPLEATFTPDSQ 453 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~-s~dg~i~iwd~~~--~~~--~~~~~~~~~---~~~~i~~~~~sp~g~ 453 (515)
. ..............+..++|+|+|++++++ ..++.+.+|++.. ++. ...+..... ....+..++|+|||+
T Consensus 174 ~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 174 Q-LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp C-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred c-EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 1 111111112233356789999999977765 4678999999874 543 222222111 113378899999999
Q ss_pred EEE-EEeCCCcEEEEECC---CCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeC---CEEEEcCCC
Q psy6127 454 FVA-SGSTDGQVHIWNAE---RGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS---NMAFWIPTL 512 (515)
Q Consensus 454 ~l~-sgs~dg~I~iwd~~---~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~---dv~iW~~~~ 512 (515)
+|+ +...++.|.+|++. ..+.+..+.. +...+.+++|+|||++|++++. .+.+|+++.
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQIST-EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEEC-SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEec-CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 875 45568999999997 2355666655 5667899999999998888763 399996653
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.91 E-value=9.6e-23 Score=202.51 Aligned_cols=296 Identities=11% Similarity=0.042 Sum_probs=209.0
Q ss_pred eeeEeeeeccccCCcEEE-----EEEcCCCCEEEEEeC-CC--eEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEE
Q psy6127 209 RSYRVAKVFRENTDKINS-----LDYSSDGSLLISCSD-DD--QIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIH 280 (515)
Q Consensus 209 ~~~~~~~~~~~h~~~I~~-----l~~spd~~~lasgs~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 280 (515)
.++.....+..|...... .+|+|||++|+.++. ++ .|.+||+.+++.......+...+....|+|+++.+++
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence 335556667777776666 889999999999987 66 4888999988887776666666667889999999888
Q ss_pred EEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEE--EcCCCCEEEEE----------------------eCCCcEEEEEc
Q psy6127 281 ASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLN--LSPVDDSFISG----------------------SYDKTVRVWDL 336 (515)
Q Consensus 281 ~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~--~~~~~~~l~s~----------------------s~dg~i~iwd~ 336 (515)
++ .++.+++||+.+++....+..+...+.... ++|+++.++.. ..+..|.+||+
T Consensus 98 ~~--~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 175 (388)
T 3pe7_A 98 VK--DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL 175 (388)
T ss_dssp EE--TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred Ee--CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence 76 578999999999988777766666564444 48999988743 24467999999
Q ss_pred CCCCeEEEEecCCCeeEEEECC-CCCEEEEEECCC------cEEEEEeecCCCCCceeeecCCCCC-cCeEEEEEcCCCC
Q psy6127 337 RQPNNVGMIQLSGNKPIAAYDP-EGLAFAIGVNSD------SIKLYDVRSYDKGPFASFKCPGERG-CEWTGLKFSPDGK 408 (515)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~-~~i~~l~~sp~~~ 408 (515)
.+++..........+..+.|+| +|+.++....++ .|.++|..... ......... ..+..++|+|||+
T Consensus 176 ~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 176 KTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-----MRKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-----CEESCCCCTTEEEEEEEECTTSS
T ss_pred CCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-----eEEeeeCCCCcccccceECCCCC
Confidence 9998777666666688999999 999998877643 66777765432 111112222 3577889999999
Q ss_pred EEEEEEC-CC----cEEEEECCCCceeEE--eeccccCCCCCEEEEEecCCCEEEEE---------eCCCcEEEEECCCC
Q psy6127 409 LILVSTN-GS----IIRLFDAFNGNCVQS--LSGVLNNNASPLEATFTPDSQFVASG---------STDGQVHIWNAERG 472 (515)
Q Consensus 409 ~l~~~s~-dg----~i~iwd~~~~~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~sg---------s~dg~I~iwd~~~~ 472 (515)
.|+..+. ++ .|++||+.+++.... +.............+|+|||+.|+.. ..+..|++||+.++
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 8765443 22 399999998875332 22210000001223799999988754 44668999999988
Q ss_pred eEEEEEcCCCCC-----------CeEEEEECCCCCEEEEee---CCEEEEcCCCC
Q psy6127 473 YKVCVLDGDHPS-----------AVQSLQFNPKYHMLASAC---SNMAFWIPTLS 513 (515)
Q Consensus 473 ~~~~~~~~~h~~-----------~V~~l~~sp~~~~las~~---~dv~iW~~~~~ 513 (515)
+... +.. +.. .+.+++|+|||+.|+.++ +...||.++..
T Consensus 331 ~~~~-l~~-~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 331 TQHR-VAR-HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp EEEE-EEE-CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred ceEE-ecc-ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 7644 333 444 578899999999888766 33677776654
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=4.6e-22 Score=194.23 Aligned_cols=243 Identities=12% Similarity=0.057 Sum_probs=189.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCC-CceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEec
Q psy6127 226 SLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKK-YGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFP 304 (515)
Q Consensus 226 ~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~ 304 (515)
.++++++++++++++.+++|++||..+++.+..+..+. ..+..++|+|+++.++++. ..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~-~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN-NHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE-TTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe-CCCCcEEEEeCCCCcEEEEEE
Confidence 45688899999999999999999999999888887553 2578999999998777665 468999999999998887765
Q ss_pred CC------CCCeEEEEEcCCCCEEEEEeCC------------CcEEEEEcCCCC---eEEEEecCCCeeEEEECCCCCEE
Q psy6127 305 GH------VRKVSSLNLSPVDDSFISGSYD------------KTVRVWDLRQPN---NVGMIQLSGNKPIAAYDPEGLAF 363 (515)
Q Consensus 305 ~h------~~~v~~l~~~~~~~~l~s~s~d------------g~i~iwd~~~~~---~~~~~~~~~~~~~~~~s~~~~~l 363 (515)
.+ ...+..++|+|+|+++++++.+ +.|.+||+.+++ .+........+.+++|+|+|+ +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 32 2337889999999999998865 899999998843 344555555688899999999 5
Q ss_pred EEEECCCcEEEEEeecCCCCCceeeecCC---------------------------------------------------
Q psy6127 364 AIGVNSDSIKLYDVRSYDKGPFASFKCPG--------------------------------------------------- 392 (515)
Q Consensus 364 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~--------------------------------------------------- 392 (515)
+++ ++.|.+||..+++.. ..+....
T Consensus 162 ~~~--~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 237 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYT--VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 237 (349)
T ss_dssp EEE--SSSEEEECTTTCCEE--EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCcee--ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence 554 345999998765411 1111000
Q ss_pred --------------CCCcCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEE
Q psy6127 393 --------------ERGCEWTGLKFSP-DGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVAS 457 (515)
Q Consensus 393 --------------~~~~~i~~l~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s 457 (515)
.....+..++|+| ++++++++ ++.|.+||+.+++.+..+.... .+..++|+|+|++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH----TYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS----CCCEEEECSSSSCEEE
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC----CccceEECCCCCEEEE
Confidence 0012455778889 99999888 8899999999998877776322 2678999999998888
Q ss_pred EeCCCcEEEEECCCCeEEEEEcC
Q psy6127 458 GSTDGQVHIWNAERGYKVCVLDG 480 (515)
Q Consensus 458 gs~dg~I~iwd~~~~~~~~~~~~ 480 (515)
++.++.|++||..+++.+..+..
T Consensus 312 ~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 312 GGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp ESBSSEEEEEETTTTEEEEEEEC
T ss_pred ecCCCeEEEEeccccceeeeeec
Confidence 88899999999999999988865
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=1.6e-20 Score=184.79 Aligned_cols=279 Identities=13% Similarity=0.167 Sum_probs=189.5
Q ss_pred cCCCCEEEEEe----CCCeEEEEEC--CCCeeeeEecCCCCceeEEEEecCCCeEEEEEee--CCCeEEEEECCC--Ce-
Q psy6127 230 SSDGSLLISCS----DDDQIIIYDC--EQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTK--VDATLRYLSLHD--NK- 298 (515)
Q Consensus 230 spd~~~lasgs----~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~--~d~~v~vwd~~~--~~- 298 (515)
.+...+++.|+ .++.|.+|++ .+++.......+...+..++|+|+++.+++++.. .++.|.+|++.. ++
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 33445566664 3568899866 4555433222266778889999999988887732 248999998865 43
Q ss_pred -eeEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCeEE----EEecC-----------CCeeEEEECCCCC
Q psy6127 299 -YVRYFPGHVRKVSSLNLSPVDDSFISGS-YDKTVRVWDLRQPNNVG----MIQLS-----------GNKPIAAYDPEGL 361 (515)
Q Consensus 299 -~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~----~~~~~-----------~~~~~~~~s~~~~ 361 (515)
.+.....+......+++ +++++++++ .++.|.+|++.....+. ..... ..+..++|+|+|+
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence 33444445667778888 788777776 57899999997543321 11111 1246799999999
Q ss_pred EEEEEE-CCCcEEEEEeecCCC----C-Ccee---eecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCce--
Q psy6127 362 AFAIGV-NSDSIKLYDVRSYDK----G-PFAS---FKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNC-- 429 (515)
Q Consensus 362 ~l~~g~-~dg~i~i~d~~~~~~----~-~~~~---~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~-- 429 (515)
+++++. .++.+.+|++..... . .... .............++|+|+|+++++++ .++.|.+|++.+++.
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE 247 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence 776655 478999999986442 1 1110 111223344567999999999888877 689999999987754
Q ss_pred eEEeeccccCCCCCEEEEEecCCCEEEEEeCC--CcEEEEECC--CCe--EEEEEcCCCCCCeEEEEECCCCCEEEEeeC
Q psy6127 430 VQSLSGVLNNNASPLEATFTPDSQFVASGSTD--GQVHIWNAE--RGY--KVCVLDGDHPSAVQSLQFNPKYHMLASACS 503 (515)
Q Consensus 430 ~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d--g~I~iwd~~--~~~--~~~~~~~~h~~~V~~l~~sp~~~~las~~~ 503 (515)
+..+.....+...+..++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++.
T Consensus 248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEET
T ss_pred eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEEC
Confidence 33333333333346799999999998776654 899999985 455 4444442 456789999999998888762
Q ss_pred ---CEEEEcCCC
Q psy6127 504 ---NMAFWIPTL 512 (515)
Q Consensus 504 ---dv~iW~~~~ 512 (515)
.+.+|.++.
T Consensus 326 ~~~~v~v~~~d~ 337 (361)
T 3scy_A 326 DTNVIQIFERDQ 337 (361)
T ss_dssp TTTEEEEEEECT
T ss_pred CCCCEEEEEEEC
Confidence 389977653
No 156
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.88 E-value=1.2e-20 Score=185.57 Aligned_cols=286 Identities=12% Similarity=0.099 Sum_probs=211.1
Q ss_pred CcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeeEecCC-----
Q psy6127 198 RTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSD----------DDQIIIYDCEQGTSKNTINSK----- 262 (515)
Q Consensus 198 ~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~----------dg~i~iwd~~~~~~~~~~~~~----- 262 (515)
+..+.+|| ..+++.+.++..+..+ .++|+|||+++++++. +++|.+||..+++.+.++...
T Consensus 30 d~~v~v~D--~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 30 ESRVHVYD--YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GCEEEEEE--TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred cCeEEEEE--CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 55688888 5566777777777666 8999999999999863 678999999999888877643
Q ss_pred -CCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEE-ecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCC-
Q psy6127 263 -KYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRY-FPGHVRKVSSLNLSPVD-DSFISGSYDKTVRVWDLRQ- 338 (515)
Q Consensus 263 -~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~- 338 (515)
......++++|++++++++....+++|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|+...
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 2456789999999999988743478999999999998887 542 2 23346677876 5788899999999999875
Q ss_pred CCeEEEEe------cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCC-------CCCcCeEEEEEcC
Q psy6127 339 PNNVGMIQ------LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPG-------ERGCEWTGLKFSP 405 (515)
Q Consensus 339 ~~~~~~~~------~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~i~~l~~sp 405 (515)
++...... .......+.++|++..++..+.++.+.++|+............... ........++|+|
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 55442221 1111222344567778887888999999998653321111111100 0001111378999
Q ss_pred CCCEEEEEEC-----------CCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCC--
Q psy6127 406 DGKLILVSTN-----------GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERG-- 472 (515)
Q Consensus 406 ~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~-- 472 (515)
+++.++++.. .+.|.+||+.+++.+..+..+. +..++|+|||++|++++. +.|.+||..++
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l 337 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP 337 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-----CCEEEEETTTTEEEEECS-SCEEEEECSSSSC
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc
Confidence 9988887653 3479999999999998887643 789999999999998886 99999999999
Q ss_pred eEEEEEcCCCCCCeEEEEECCCCC
Q psy6127 473 YKVCVLDGDHPSAVQSLQFNPKYH 496 (515)
Q Consensus 473 ~~~~~~~~~h~~~V~~l~~sp~~~ 496 (515)
+.+..+.. +......++++|+|.
T Consensus 338 ~~~~~i~~-~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 338 KLLRTIEG-AAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEEETT-SCSSEEEEEECCCSC
T ss_pred eeeEEecc-CCCCcEEEEecCCCC
Confidence 99999865 677789999999985
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=7.8e-22 Score=212.42 Aligned_cols=302 Identities=11% Similarity=0.049 Sum_probs=206.1
Q ss_pred CCcEEEEccceeeeeEeeeeccccCC---cEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeee--eEecCC
Q psy6127 197 SRTITKCSENLVRSYRVAKVFRENTD---KINSLDYSSDGSLLISCSD---------DDQIIIYDCEQGTSK--NTINSK 262 (515)
Q Consensus 197 ~~~~i~~wd~~~~~~~~~~~~~~h~~---~I~~l~~spd~~~lasgs~---------dg~i~iwd~~~~~~~--~~~~~~ 262 (515)
.++.+++|+ +..+++...+.+|.. .|.+++|||||++||+++. ++.|++||+.+++.+ ..+
T Consensus 34 ~d~~i~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--- 108 (719)
T 1z68_A 34 ADNNIVLYN--IETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--- 108 (719)
T ss_dssp TTSCEEEEE--SSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---
T ss_pred CCCCEEEEE--cCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---
Confidence 367899999 777777777777655 4999999999999999886 789999999988763 222
Q ss_pred CCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEe-cCCCCCe-----------------EEEEEcCCCCEEEE
Q psy6127 263 KYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYF-PGHVRKV-----------------SSLNLSPVDDSFIS 324 (515)
Q Consensus 263 ~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~-~~h~~~v-----------------~~l~~~~~~~~l~s 324 (515)
...+..++|+|||+.++++. ++.|++||+.+++..... .++...| .+++|+|||+.|++
T Consensus 109 ~~~~~~~~~SPDG~~la~~~---~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~ 185 (719)
T 1z68_A 109 PRPIQYLCWSPVGSKLAYVY---QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY 185 (719)
T ss_dssp CSSBCCEEECSSTTCEEEEE---TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred CcccccceECCCCCEEEEEE---CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence 25688999999999998875 889999999988765433 2333322 48999999999999
Q ss_pred EeCCC----------------------------------cEEEEEcCCCCeE--EEE-------ecCCCeeEEEECCCCC
Q psy6127 325 GSYDK----------------------------------TVRVWDLRQPNNV--GMI-------QLSGNKPIAAYDPEGL 361 (515)
Q Consensus 325 ~s~dg----------------------------------~i~iwd~~~~~~~--~~~-------~~~~~~~~~~~s~~~~ 361 (515)
++.|. .|++||+.+++.. ..+ .+...+..++|+||++
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~ 265 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER 265 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence 88652 7889999987652 111 1233467899999987
Q ss_pred EEEEEECCC----cEEEEE----eecCCCCCceeeecCCCCCcCeE-----EEEEcCCCCEEEE--EECCC--cEEEEEC
Q psy6127 362 AFAIGVNSD----SIKLYD----VRSYDKGPFASFKCPGERGCEWT-----GLKFSPDGKLILV--STNGS--IIRLFDA 424 (515)
Q Consensus 362 ~l~~g~~dg----~i~i~d----~~~~~~~~~~~~~~~~~~~~~i~-----~l~~sp~~~~l~~--~s~dg--~i~iwd~ 424 (515)
++++....+ .|.+|| ..+++...... .....+...+. .+.|+|||+.++. +..+| .|.+||+
T Consensus 266 ~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~ 344 (719)
T 1z68_A 266 VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE-HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD 344 (719)
T ss_dssp EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE-EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred EEEEEeccccCeEEEEEEcccCCCCCCceEEEEe-cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEEC
Confidence 777654332 478888 55543221110 00013333444 6899999996654 43555 5777787
Q ss_pred CCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC-----CcEEEEECCC--Ce-EEEEEcC---CCCCCeEEEEECC
Q psy6127 425 FNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD-----GQVHIWNAER--GY-KVCVLDG---DHPSAVQSLQFNP 493 (515)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d-----g~I~iwd~~~--~~-~~~~~~~---~h~~~V~~l~~sp 493 (515)
.+++ ...+.. ....+..+.++ +++.++..+.+ +..++|.+.. +. ....+.. .|...+..+.|+|
T Consensus 345 ~~~~-~~~lt~---~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~ 419 (719)
T 1z68_A 345 TVEN-AIQITS---GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD 419 (719)
T ss_dssp CSTT-CEECSC---SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG
T ss_pred CCCc-eEeccc---CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECC
Confidence 7766 333432 22336677777 88777766654 7888888753 42 1233322 1556788999999
Q ss_pred CCCEEEEe-eC----CEEEEcCCC
Q psy6127 494 KYHMLASA-CS----NMAFWIPTL 512 (515)
Q Consensus 494 ~~~~las~-~~----dv~iW~~~~ 512 (515)
++++++.. ++ .+.+|++..
T Consensus 420 dg~~l~~~~s~~~~p~~~l~d~~~ 443 (719)
T 1z68_A 420 YAKYYALVCYGPGIPISTLHDGRT 443 (719)
T ss_dssp GGSSEEEEECCBSSCEEEEECSSS
T ss_pred CCCEEEEEcCCCCCCeEEEEECCC
Confidence 99877754 32 267887754
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=2.4e-21 Score=203.39 Aligned_cols=267 Identities=11% Similarity=0.055 Sum_probs=193.8
Q ss_pred EEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECC
Q psy6127 175 SLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSD---DDQIIIYDCE 251 (515)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~---dg~i~iwd~~ 251 (515)
..+++++++. +++.+..++.+.+|+ +..++..+....+...+.+++|+|| +++++++. +...++|.+.
T Consensus 26 ~~~~~~DG~~------la~~s~~~g~~~lw~--~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 26 SLQGVVDGDK------LLVVGFSEGSVNAYL--YDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp EEEEEETTTE------EEEEEEETTEEEEEE--EETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred eeecCCCCCe------EEEEEccCCceeEEE--EcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 3344455554 555555578899998 6666655544444478999999999 78887775 4555665543
Q ss_pred C---CeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q psy6127 252 Q---GTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYD 328 (515)
Q Consensus 252 ~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 328 (515)
. +... .+... ......+|+|+++.+++++++.+ .+.+||+.+++.......+. .+++|+|||+.|++++.|
T Consensus 97 ~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp TTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEE
T ss_pred ccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEc
Confidence 3 3322 34333 23557799999998888876544 45599999988766554333 789999999999988877
Q ss_pred ----CcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEECCC--cEEEEEeecCCCCCceeeecCCCCCcCeEEEE
Q psy6127 329 ----KTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSD--SIKLYDVRSYDKGPFASFKCPGERGCEWTGLK 402 (515)
Q Consensus 329 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~ 402 (515)
+.|++||+.+++......+...+..++|+|||+.|+++..++ .|++||+.+++ .. ....+...+..++
T Consensus 171 ~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~-----~~-~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS-----VE-DLELPSKDFSSYR 244 (582)
T ss_dssp ETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC-----EE-ECCCSCSHHHHHC
T ss_pred CCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc-----EE-EccCCCcChhhhh
Confidence 789999999988775555566688999999999999888888 89999988754 22 3334444455556
Q ss_pred --------EcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCC---cEEEEECCC
Q psy6127 403 --------FSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDG---QVHIWNAER 471 (515)
Q Consensus 403 --------~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg---~I~iwd~~~ 471 (515)
|+|||..+++++.++.+++|++ ++..... ...+.+++|+ +++++++++.+. .+++||..+
T Consensus 245 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~------~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 245 PTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP------QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC------SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC------CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999988889999999999999 6654421 1337899999 999999888774 477777653
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=8.3e-22 Score=212.20 Aligned_cols=281 Identities=14% Similarity=0.112 Sum_probs=195.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCC---ceeEEEEecCCCeEEEEEe-------eCCCeEEEEECC
Q psy6127 226 SLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKY---GVDLIKFTHSKTTAIHAST-------KVDATLRYLSLH 295 (515)
Q Consensus 226 ~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~s~-------~~d~~v~vwd~~ 295 (515)
+++|+|||+++++ +.|++|++||+.+++....+..+.. .+.+++|+|||+.+++++. +.++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6789999966555 4699999999999988777765543 4899999999999988874 126899999999
Q ss_pred CCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCC-------------------CeeEEEE
Q psy6127 296 DNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSG-------------------NKPIAAY 356 (515)
Q Consensus 296 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------------------~~~~~~~ 356 (515)
+++.+.... ....+..++|+|||+.|+.+. |+.|++||+.+++......... ....++|
T Consensus 99 ~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 988731111 135688999999999999885 7899999999887754332111 1147999
Q ss_pred CCCCCEEEEEECCC----------------------------------cEEEEEeecCCCCCceee---ecCCCCCcCeE
Q psy6127 357 DPEGLAFAIGVNSD----------------------------------SIKLYDVRSYDKGPFASF---KCPGERGCEWT 399 (515)
Q Consensus 357 s~~~~~l~~g~~dg----------------------------------~i~i~d~~~~~~~~~~~~---~~~~~~~~~i~ 399 (515)
+|||+.|++++.|. .+++||+.++.......+ .....+...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99999999987552 778898876431000011 01124666789
Q ss_pred EEEEcCCCCEEEEEECC----CcEEEEE----CCCCceeEEee-ccccCCCCCE-----EEEEecCCCEEEE--EeCCC-
Q psy6127 400 GLKFSPDGKLILVSTNG----SIIRLFD----AFNGNCVQSLS-GVLNNNASPL-----EATFTPDSQFVAS--GSTDG- 462 (515)
Q Consensus 400 ~l~~sp~~~~l~~~s~d----g~i~iwd----~~~~~~~~~~~-~~~~~~~~i~-----~~~~sp~g~~l~s--gs~dg- 462 (515)
.++|+||++++++.... ..|.+|| ..++++...+. ....+...+. .++|+|||+.++. ...+|
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~ 336 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY 336 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence 99999998777664432 2488999 87777655442 0011222244 7899999996554 44555
Q ss_pred -cEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeC-------CEEEEcCCC
Q psy6127 463 -QVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS-------NMAFWIPTL 512 (515)
Q Consensus 463 -~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~-------dv~iW~~~~ 512 (515)
.|++||+.+++ ...+.. +...+..+.++ +++.++..+. ..++|.++.
T Consensus 337 ~~l~~~~~~~~~-~~~lt~-~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 337 KHIHYIKDTVEN-AIQITS-GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEEESSCSTT-CEECSC-SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred eEEEEEECCCCc-eEeccc-CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 57778887776 344544 55668887777 7776665543 388998765
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=1.7e-19 Score=177.77 Aligned_cols=252 Identities=10% Similarity=0.091 Sum_probs=175.8
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeeEecCC-CCceeEEEEecCCCeEEEEEee-------------
Q psy6127 220 NTDKINSLDYSSDGSLLISCSDDDQIIIYDCE-QGTSKNTINSK-KYGVDLIKFTHSKTTAIHASTK------------- 284 (515)
Q Consensus 220 h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~~------------- 284 (515)
+...+..++|+|||++|++++.+ .|.+|++. +++........ .+....++|+|+++.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999987 99999997 77765433211 1235668999999864443332
Q ss_pred CCCeEEEEECC-CCeeeEEec----CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC-CCCeEE--EEe---cCCCee
Q psy6127 285 VDATLRYLSLH-DNKYVRYFP----GHVRKVSSLNLSPVDDSFISGSY-DKTVRVWDLR-QPNNVG--MIQ---LSGNKP 352 (515)
Q Consensus 285 ~d~~v~vwd~~-~~~~~~~~~----~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~-~~~~~~--~~~---~~~~~~ 352 (515)
.++.+.+|++. +++....+. .+...+.+++|+|||+++++++. ++.|++||+. +++... .+. +...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 58999999997 465543332 25567999999999998887764 6899999998 676532 233 134578
Q ss_pred EEEECCCCCEEEEEEC-CCcEEEEEeecCCCCCc---eeeecC-CC---CCc------CeEEEE-EcCCCCEEEEEECCC
Q psy6127 353 IAAYDPEGLAFAIGVN-SDSIKLYDVRSYDKGPF---ASFKCP-GE---RGC------EWTGLK-FSPDGKLILVSTNGS 417 (515)
Q Consensus 353 ~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~---~~~~~~-~~---~~~------~i~~l~-~sp~~~~l~~~s~dg 417 (515)
.++|+|+|++++++.. ++.+.+|++........ ...... .. +.. .+..++ |+|||++|+++..+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 8999999999988775 68999998864211111 112221 11 121 477899 999999988776432
Q ss_pred ------cEEEEECC-CCceeEEeeccccCCCCCEEEEEec---CCCEEEEEeCC-CcEEEEECCCC
Q psy6127 418 ------IIRLFDAF-NGNCVQSLSGVLNNNASPLEATFTP---DSQFVASGSTD-GQVHIWNAERG 472 (515)
Q Consensus 418 ------~i~iwd~~-~~~~~~~~~~~~~~~~~i~~~~~sp---~g~~l~sgs~d-g~I~iwd~~~~ 472 (515)
.|.+|++. +++..............+..++|+| ||++|++++.+ +.|.+|+++..
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 5664432110111222356789999 89999998864 89999998766
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.87 E-value=9.9e-21 Score=188.23 Aligned_cols=275 Identities=11% Similarity=0.025 Sum_probs=191.0
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCee
Q psy6127 223 KINSLDYSSDGSLLISCSDD---DQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKY 299 (515)
Q Consensus 223 ~I~~l~~spd~~~lasgs~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~ 299 (515)
.+.+++|+|||++|+.+... ..|.+||+.+++.......+......+.|+|+++.+++++ .++.+++||+.+++.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~--~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVK--NELNLMKVDLETLEE 114 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEE--TTTEEEEEETTTCCE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEE--cCCcEEEEECCCCCc
Confidence 37788999999998887653 4788999988876544333333333478999999988876 577999999998877
Q ss_pred eEEecCCCCCeEE-------------------EEEcCCCCEEEEE-----eCCCcEEEEEcCCCCeEEEEecCCCeeEEE
Q psy6127 300 VRYFPGHVRKVSS-------------------LNLSPVDDSFISG-----SYDKTVRVWDLRQPNNVGMIQLSGNKPIAA 355 (515)
Q Consensus 300 ~~~~~~h~~~v~~-------------------l~~~~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 355 (515)
......+...... +.|+|+++.++.+ ..+..|.+||+.+++..........+..+.
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~ 194 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI 194 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence 6665545443322 3467777765544 356789999999988777666666688899
Q ss_pred ECC-CCCEEEEEECC------CcEEEEEeecCCCCCceeeecCCC-CCcCeEEEEEcCCCCEEEEEECC-----CcEEEE
Q psy6127 356 YDP-EGLAFAIGVNS------DSIKLYDVRSYDKGPFASFKCPGE-RGCEWTGLKFSPDGKLILVSTNG-----SIIRLF 422 (515)
Q Consensus 356 ~s~-~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~~~~~~-~~~~i~~l~~sp~~~~l~~~s~d-----g~i~iw 422 (515)
|+| +++.++..+.+ ..|.+||+.... ....... ....+..++|+|+|++|+.++.+ +.|++|
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA 269 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence 999 78878777654 357777775432 1111122 13357789999999988776543 449999
Q ss_pred ECCCCceeEEeeccccCCCCCEEEEEec-CCCEEEEEe----------------CCCcEEEEECCCCeEEEEEcCCCCC-
Q psy6127 423 DAFNGNCVQSLSGVLNNNASPLEATFTP-DSQFVASGS----------------TDGQVHIWNAERGYKVCVLDGDHPS- 484 (515)
Q Consensus 423 d~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~sgs----------------~dg~I~iwd~~~~~~~~~~~~~h~~- 484 (515)
|+.+++...... ... .. ..|+| ||+++++++ .++.|++||+.+++... +.. +..
T Consensus 270 d~~~g~~~~l~~-~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~ 341 (396)
T 3c5m_A 270 NPETLENEEVMV-MPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCK-HSTS 341 (396)
T ss_dssp CTTTCCEEEEEE-CCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEE-CCCC
T ss_pred ECCCCCeEEeee-CCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccC-CCCc
Confidence 998887543322 111 23 89999 999888754 34789999998887533 333 333
Q ss_pred ----------CeEEEEECCCCCEEEEeeC---CEEEEcCCC
Q psy6127 485 ----------AVQSLQFNPKYHMLASACS---NMAFWIPTL 512 (515)
Q Consensus 485 ----------~V~~l~~sp~~~~las~~~---dv~iW~~~~ 512 (515)
.+..++|+|||+.|+.++. ...+|.++.
T Consensus 342 ~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 342 WDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 2567899999998887763 356776553
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=1.7e-20 Score=188.99 Aligned_cols=215 Identities=15% Similarity=0.195 Sum_probs=164.0
Q ss_pred CeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-----------C-----eEEEEecCCC
Q psy6127 287 ATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQP-----------N-----NVGMIQLSGN 350 (515)
Q Consensus 287 ~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-----------~-----~~~~~~~~~~ 350 (515)
+.+++|+.... .+...++.+++++++.++++++.|+ +++|+.... . ....+.+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 56777764211 1344688999999999999999988 889875311 1 1123344566
Q ss_pred eeEEEECCCCCEEE----EEECCCcEEEEEeecC-----CC-CCceeeecCCCCCcCeEEEEEcCC-CCEEEEEECCCcE
Q psy6127 351 KPIAAYDPEGLAFA----IGVNSDSIKLYDVRSY-----DK-GPFASFKCPGERGCEWTGLKFSPD-GKLILVSTNGSII 419 (515)
Q Consensus 351 ~~~~~~s~~~~~l~----~g~~dg~i~i~d~~~~-----~~-~~~~~~~~~~~~~~~i~~l~~sp~-~~~l~~~s~dg~i 419 (515)
+.+++|+|++++|+ +|+.|+.|++||+++. +. .+.........|...|.+++|+|+ +.+|++++.||+|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 99999999999999 6778999999999864 11 222334555678889999999998 8899999999999
Q ss_pred EEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcC------CCCCCeEEEEECC
Q psy6127 420 RLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDG------DHPSAVQSLQFNP 493 (515)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~sp 493 (515)
++||++++........|. ..+.+++|+|+|++|++|+.||.|++||.+ ++....+.. .|...|.+++|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~---~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPST---VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGG---GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCC---CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec
Confidence 999999987665555443 349999999999999999999999999998 666666544 1223899999999
Q ss_pred CCCEEEEee-CC--------EEEEcCCCC
Q psy6127 494 KYHMLASAC-SN--------MAFWIPTLS 513 (515)
Q Consensus 494 ~~~~las~~-~d--------v~iW~~~~~ 513 (515)
++.++++.+ ++ +++|++...
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 998886543 22 889998753
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=4.6e-20 Score=185.88 Aligned_cols=246 Identities=10% Similarity=0.154 Sum_probs=172.5
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------eeeeE-----ecCCCCceeEEEEecCCCeEEEE--E
Q psy6127 220 NTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQG----------TSKNT-----INSKKYGVDLIKFTHSKTTAIHA--S 282 (515)
Q Consensus 220 h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~----------~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~--s 282 (515)
+...++.+++++++.++++++.|+ +++|+.... ..... ...+...|.+++|+|+++.++++ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999999988 899875311 00110 11245679999999999988754 5
Q ss_pred eeCCCeEEEEECCCC--------e---eeEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCeEEEE-ecCC
Q psy6127 283 TKVDATLRYLSLHDN--------K---YVRYFPGHVRKVSSLNLSPV-DDSFISGSYDKTVRVWDLRQPNNVGMI-QLSG 349 (515)
Q Consensus 283 ~~~d~~v~vwd~~~~--------~---~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~ 349 (515)
++.|+.|++||+.++ + ....+.+|...|.+++|+|+ +.+|++++.||+|++||++++...... .+..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 568999999998765 2 24566789999999999998 789999999999999999998665443 4456
Q ss_pred CeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecC----CCCCcCeEEEEEcCCCCEEEEEE-CCC------c
Q psy6127 350 NKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCP----GERGCEWTGLKFSPDGKLILVST-NGS------I 418 (515)
Q Consensus 350 ~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~i~~l~~sp~~~~l~~~s-~dg------~ 418 (515)
.+.+++|+|+|++|++|+.||.|++||.+ +.. ...+... ..|...+.+++|++++.++++.+ .+| .
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE--KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCE--EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc--cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 79999999999999999999999999987 221 1122111 12334789999999988776533 443 3
Q ss_pred EEEEECCCCce--eEEeeccc-------cCCCCCEEEEEecCCCEEEEEeC-CCcEEEEEC
Q psy6127 419 IRLFDAFNGNC--VQSLSGVL-------NNNASPLEATFTPDSQFVASGST-DGQVHIWNA 469 (515)
Q Consensus 419 i~iwd~~~~~~--~~~~~~~~-------~~~~~i~~~~~sp~g~~l~sgs~-dg~I~iwd~ 469 (515)
+++|+++..+. ...+..+. ....+-..+.+-++.+++++++. .+.|.+...
T Consensus 271 v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 271 VVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred eEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 89999986521 11111111 11112233444477777766653 445666654
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=5.5e-20 Score=198.46 Aligned_cols=284 Identities=13% Similarity=0.131 Sum_probs=191.1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCc-----eeEEEEecCCCeEEEEEeeC-------CCeE
Q psy6127 222 DKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYG-----VDLIKFTHSKTTAIHASTKV-------DATL 289 (515)
Q Consensus 222 ~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~s~~~-------d~~v 289 (515)
....+++|+|||++++++ |++|++||+.++++...+.+|... ...++|+|||+.+++.+... .+.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345688999999999886 899999999999988888777543 23488999999998877411 1678
Q ss_pred EEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC-------------------CC
Q psy6127 290 RYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS-------------------GN 350 (515)
Q Consensus 290 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------------~~ 350 (515)
.+||+.+++.. .+..|...+...+|+|||+.|+.+. |+.|++||+.+++..+..... ..
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 89999999865 4667888999999999999998884 689999999988765432111 11
Q ss_pred eeEEEECCCCCEEEEEECCC------------------------------------cEEEEEeec---CCCCCceeeecC
Q psy6127 351 KPIAAYDPEGLAFAIGVNSD------------------------------------SIKLYDVRS---YDKGPFASFKCP 391 (515)
Q Consensus 351 ~~~~~~s~~~~~l~~g~~dg------------------------------------~i~i~d~~~---~~~~~~~~~~~~ 391 (515)
...+.|||||+.|+.++.|. .+++||+.+ +.......+...
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 23489999999999876332 356666665 321111112111
Q ss_pred C---CCCcCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCCc----eeE--Ee--eccccCCC--CCEEEEEecCCCE
Q psy6127 392 G---ERGCEWTGLKFSPDGKLILVSTN----GSIIRLFDAFNGN----CVQ--SL--SGVLNNNA--SPLEATFTPDSQF 454 (515)
Q Consensus 392 ~---~~~~~i~~l~~sp~~~~l~~~s~----dg~i~iwd~~~~~----~~~--~~--~~~~~~~~--~i~~~~~sp~g~~ 454 (515)
. .+...+..++|+|||+.++.... +..|++||+.+++ +.. .+ ..+..... .....+|+|||+.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 0 25667889999999997665543 2379999999887 322 12 22221111 0236789999998
Q ss_pred EE-EEeC-CC--cEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCE-EEEeeC------CEEEEcCCC
Q psy6127 455 VA-SGST-DG--QVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHM-LASACS------NMAFWIPTL 512 (515)
Q Consensus 455 l~-sgs~-dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-las~~~------dv~iW~~~~ 512 (515)
++ ..+. +| .|++||..+++... +.. ....|..+.+ +|++. +++++. ...||.++.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~-g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCTF-ITK-GTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCEE-SCC-SSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred EEEEEEcCCCceEEEEEECCCCceEe-ccc-CCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEEC
Confidence 77 6653 33 58889988776554 333 3445665542 33444 444443 256666543
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.85 E-value=8e-20 Score=194.79 Aligned_cols=290 Identities=9% Similarity=-0.001 Sum_probs=203.8
Q ss_pred eeccccCCcEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCeeeeEecCCCCcee---------EEEEe--cCCCe-EEE
Q psy6127 215 KVFRENTDKINSLDYSSDGSLLISC--SDDDQIIIYDCEQGTSKNTINSKKYGVD---------LIKFT--HSKTT-AIH 280 (515)
Q Consensus 215 ~~~~~h~~~I~~l~~spd~~~lasg--s~dg~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~ 280 (515)
..+.+|...+..++|++++-++++. +.++...||....+.....+..+...+. ...|+ ||++. +++
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3567899999999999987777777 5688999999655666667777766666 66676 99998 665
Q ss_pred EEeeCCCeEEEEECC--C-CeeeEEecC-----CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEEcCC----
Q psy6127 281 ASTKVDATLRYLSLH--D-NKYVRYFPG-----HVRKVSSLNLSPVDDSFISGSYD----------KTVRVWDLRQ---- 338 (515)
Q Consensus 281 ~s~~~d~~v~vwd~~--~-~~~~~~~~~-----h~~~v~~l~~~~~~~~l~s~s~d----------g~i~iwd~~~---- 338 (515)
++ ..+..|.++++. . ++ ...+.. |...+.+++|+|||+.|++++.| ..|++||+.+
T Consensus 97 ~~-~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 97 TH-FGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EB-TTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EE-CCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 54 346778888776 3 43 445555 67789999999999999998877 5899999988
Q ss_pred --CCeEEEE-ecCCCeeEEEECCCCCEEEEEECC--------CcEEEEEee-cCCCCCceeeecCCCCCcCeEEEEEcCC
Q psy6127 339 --PNNVGMI-QLSGNKPIAAYDPEGLAFAIGVNS--------DSIKLYDVR-SYDKGPFASFKCPGERGCEWTGLKFSPD 406 (515)
Q Consensus 339 --~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~d--------g~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~l~~sp~ 406 (515)
++..... .....+..++|+|||++|+.++.+ ..|.+||+. ++.... .......+...+..++|+||
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~--~~~l~~~~~~~~~~~~~spd 252 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD--TRTLLGGPEEAIAQAEWAPD 252 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE--EEEEEEETTBCEEEEEECTT
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc--cEEeCCCCCceEcceEECCC
Confidence 5554433 334456778999999999988755 379999998 331111 11222234567889999999
Q ss_pred CCEEEEEECCC--cEEEEECCCCceeEEeeccccCCC-----CCEEEEEecCCCEEEEEeCCCcEEEE--ECCCCeEEEE
Q psy6127 407 GKLILVSTNGS--IIRLFDAFNGNCVQSLSGVLNNNA-----SPLEATFTPDSQFVASGSTDGQVHIW--NAERGYKVCV 477 (515)
Q Consensus 407 ~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~-----~i~~~~~sp~g~~l~sgs~dg~I~iw--d~~~~~~~~~ 477 (515)
|++++++..++ .|++||..+++.......+..... .+..++|+|+++++++++. +.+++| |..+++ +..
T Consensus 253 g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~ 330 (662)
T 3azo_A 253 GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVD 330 (662)
T ss_dssp SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEE
T ss_pred CeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEE
Confidence 99777777787 566677667765443332221110 1457899999999999998 999999 666565 566
Q ss_pred EcCCCCCCeEEE-EECCCCCEEEEeeCC--EEEEcCC
Q psy6127 478 LDGDHPSAVQSL-QFNPKYHMLASACSN--MAFWIPT 511 (515)
Q Consensus 478 ~~~~h~~~V~~l-~~sp~~~~las~~~d--v~iW~~~ 511 (515)
+.. |.+.+..+ +++++..++++++.+ ..+|.++
T Consensus 331 l~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 331 AAG-PWTEWAATLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp CCS-SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred ecC-CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 766 77778877 665554455555543 4555543
No 166
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=2.1e-19 Score=175.29 Aligned_cols=231 Identities=12% Similarity=0.062 Sum_probs=171.6
Q ss_pred EEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCC-CCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCeEEEEe
Q psy6127 269 IKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHV-RKVSSLNLSPVDDSFI-SGSYDKTVRVWDLRQPNNVGMIQ 346 (515)
Q Consensus 269 ~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~ 346 (515)
+++++++..+++. +.++.|++||..+++.+..+..+. ..+..++|+|+++.++ ++..++.|.+||+.+++....+.
T Consensus 5 ~~~~~~~~~~v~~--~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 5 PALKAGHEYMIVT--NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCTTCEEEEEE--ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccCCCEEEEEe--CCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 3455655444433 479999999999999888876543 2578999999998654 55578999999999998887776
Q ss_pred cCCC-------eeEEEECCCCCEEEEEECC------------CcEEEEEeecCCCCC-ceeeecCCCCCcCeEEEEEcCC
Q psy6127 347 LSGN-------KPIAAYDPEGLAFAIGVNS------------DSIKLYDVRSYDKGP-FASFKCPGERGCEWTGLKFSPD 406 (515)
Q Consensus 347 ~~~~-------~~~~~~s~~~~~l~~g~~d------------g~i~i~d~~~~~~~~-~~~~~~~~~~~~~i~~l~~sp~ 406 (515)
.... +..++|+|+|+++++++.+ +.|.+||+.+++... ..... +...+.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~d 158 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP----MPRQVYLMRAADD 158 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE----CCSSCCCEEECTT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc----CCCcccceeECCC
Confidence 5332 6789999999999998865 899999998743211 11111 1224678999999
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeecccc------------------------------------------------
Q psy6127 407 GKLILVSTNGSIIRLFDAFNGNCVQSLSGVLN------------------------------------------------ 438 (515)
Q Consensus 407 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~------------------------------------------------ 438 (515)
|+ +++++ +.|++||..+++....+.....
T Consensus 159 g~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 159 GS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp SC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred Cc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 99 66554 3499999999887766543210
Q ss_pred -----------------CCCCCEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEE
Q psy6127 439 -----------------NNASPLEATFTP-DSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500 (515)
Q Consensus 439 -----------------~~~~i~~~~~sp-~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las 500 (515)
....+..++|+| +|++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|++++|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEE
T ss_pred EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEE
Confidence 001245677889 99999988 88999999999999888864 345779999999988777
Q ss_pred eeC--CEEEEcCCC
Q psy6127 501 ACS--NMAFWIPTL 512 (515)
Q Consensus 501 ~~~--dv~iW~~~~ 512 (515)
++. .+++|+++.
T Consensus 312 ~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 312 GGTFNDLAVFNPDT 325 (349)
T ss_dssp ESBSSEEEEEETTT
T ss_pred ecCCCeEEEEeccc
Confidence 653 499999864
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=4.7e-19 Score=174.63 Aligned_cols=273 Identities=11% Similarity=0.041 Sum_probs=181.9
Q ss_pred EEEEEeCC--CeEEEEEC--CCCeeeeE--ec-CCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC-CCeeeEEecC-
Q psy6127 235 LLISCSDD--DQIIIYDC--EQGTSKNT--IN-SKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH-DNKYVRYFPG- 305 (515)
Q Consensus 235 ~lasgs~d--g~i~iwd~--~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~-~~~~~~~~~~- 305 (515)
+++.|+.. +.|.+|++ .+++.... .. .....+..++|+|+++.+++++ .+ .|.+|++. +++.......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~--~~-~v~~~~~~~~g~~~~~~~~~ 80 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA--MK-KWSSFAVKSPTEIVHEASHP 80 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE--BT-EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc--cc-eEEEEEECCCCCEEEeeEee
Confidence 35556543 46777654 45554322 21 2334688999999999887665 34 99999997 7776543321
Q ss_pred CCCCeEEEEEcCCCCE--EEEEe-------------CCCcEEEEEcC-CCCeEEEEe-----cCCCeeEEEECCCCCEEE
Q psy6127 306 HVRKVSSLNLSPVDDS--FISGS-------------YDKTVRVWDLR-QPNNVGMIQ-----LSGNKPIAAYDPEGLAFA 364 (515)
Q Consensus 306 h~~~v~~l~~~~~~~~--l~s~s-------------~dg~i~iwd~~-~~~~~~~~~-----~~~~~~~~~~s~~~~~l~ 364 (515)
..+.+.+++|+|+|++ +++++ .++++.+|++. .++....+. ....+..++|+|+|++++
T Consensus 81 ~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred cCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 0123556899999994 44553 68999999997 466544433 334588899999999888
Q ss_pred EEEC-CCcEEEEEee-cCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEEC-CCcEEEEECC--CCceeE---Eeecc
Q psy6127 365 IGVN-SDSIKLYDVR-SYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTN-GSIIRLFDAF--NGNCVQ---SLSGV 436 (515)
Q Consensus 365 ~g~~-dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~-dg~i~iwd~~--~~~~~~---~~~~~ 436 (515)
++.. ++.|++||+. +++......... ..+...+..++|+|+|+++++++. ++.+.+|++. +++... .+...
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDA-PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEEC-SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEec-CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence 7764 6799999998 443111111111 112456789999999999988875 6899999765 565422 22221
Q ss_pred cc----CCC------CCEEEE-EecCCCEEEEEeCC-C-----cEEEEECC-CCeEEE---EEcCCCCCCeEEEEECC--
Q psy6127 437 LN----NNA------SPLEAT-FTPDSQFVASGSTD-G-----QVHIWNAE-RGYKVC---VLDGDHPSAVQSLQFNP-- 493 (515)
Q Consensus 437 ~~----~~~------~i~~~~-~sp~g~~l~sgs~d-g-----~I~iwd~~-~~~~~~---~~~~~h~~~V~~l~~sp-- 493 (515)
.. +.. .+..++ |+|||++|++++.+ + .|.+|++. +++... .... +...+..++|+|
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~-~~~~~~~~a~sp~~ 318 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-PTSGGHSNAVSPCP 318 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-SSCCTTCCCEEECT
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec-CCCCcccceecCCC
Confidence 11 111 377899 99999998877543 2 89999996 676543 2322 444567899999
Q ss_pred -CCCEEEEeeC---CEEEEcCCC
Q psy6127 494 -KYHMLASACS---NMAFWIPTL 512 (515)
Q Consensus 494 -~~~~las~~~---dv~iW~~~~ 512 (515)
||++|++++. .+++|+++.
T Consensus 319 ~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 319 WSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TCTTEEEEECSSSCEEEEEEEET
T ss_pred cCCCEEEEEEcCCCeEEEEEEch
Confidence 8999998863 489998753
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=3.6e-20 Score=183.88 Aligned_cols=300 Identities=14% Similarity=0.068 Sum_probs=197.9
Q ss_pred cchhhccccccccCCceeE-------EEEEEeeccccceeeeeeeCCCCc--EEEEccceeeeeEeeeeccccCCcEEEE
Q psy6127 157 WDFELLHSLSSLESPHFVS-------LFVTFVSRVLTMAASLAHSRSSRT--ITKCSENLVRSYRVAKVFRENTDKINSL 227 (515)
Q Consensus 157 wd~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~s~~~~~--~i~~wd~~~~~~~~~~~~~~h~~~I~~l 227 (515)
+|..++..+..+..+.... .+++++++. +++....++ .+++|+ ...++......+|...+..+
T Consensus 15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~------l~~~~~~~g~~~l~~~d--~~~g~~~~lt~~~~~~~~~~ 86 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSK------LLFGGAFDGPWNYYLLD--LNTQVATQLTEGRGDNTFGG 86 (388)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCE------EEEEECTTSSCEEEEEE--TTTCEEEECCCSSCBCSSSC
T ss_pred ecCCCCcceEEecCCcccccchhhcCccCCCCCCE------EEEEEcCCCCceEEEEe--CCCCceEEeeeCCCCCccce
Confidence 4566676666666554322 234444443 444444333 466677 66777777777887777778
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEE--EecCCCeEEEEE--------------------eeC
Q psy6127 228 DYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK--FTHSKTTAIHAS--------------------TKV 285 (515)
Q Consensus 228 ~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~s--------------------~~~ 285 (515)
+|+|||+.|+.++.++.+++||+.+++.......+...+.... ++|++..++... ...
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence 8999999999999999999999999988777766666554444 478888776432 123
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEEcCCCCeEEEEecCC--CeeEEEE
Q psy6127 286 DATLRYLSLHDNKYVRYFPGHVRKVSSLNLSP-VDDSFISGSYD------KTVRVWDLRQPNNVGMIQLSG--NKPIAAY 356 (515)
Q Consensus 286 d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~--~~~~~~~ 356 (515)
+..|.+||+.+++.... ..+...+..++|+| ||+.|+.++.+ ..|.++|...++......... .+....|
T Consensus 167 ~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 245 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFW 245 (388)
T ss_dssp CEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEE
T ss_pred cceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceE
Confidence 47899999999875444 35667899999999 99988877753 378888887665444333332 3567899
Q ss_pred CCCCCEEEEEEC-CC----cEEEEEeecCCCCCceeeecCCCCCc---CeEEEEEcCCCCEEEEE---------ECCCcE
Q psy6127 357 DPEGLAFAIGVN-SD----SIKLYDVRSYDKGPFASFKCPGERGC---EWTGLKFSPDGKLILVS---------TNGSII 419 (515)
Q Consensus 357 s~~~~~l~~g~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~---~i~~l~~sp~~~~l~~~---------s~dg~i 419 (515)
+|+|+.|+..+. ++ .|++||+.+++....... ..... ....++|+|||+.|+.. ..+..|
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 246 VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM---PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE---CCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC---CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 999998766543 22 399999987652211111 11000 01123799999988754 446689
Q ss_pred EEEECCCCceeEEeeccccC--------CCCCEEEEEecCCCEEEEEe-CCCcEEEEEC
Q psy6127 420 RLFDAFNGNCVQSLSGVLNN--------NASPLEATFTPDSQFVASGS-TDGQVHIWNA 469 (515)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~~--------~~~i~~~~~sp~g~~l~sgs-~dg~I~iwd~ 469 (515)
++||+.+++.. .+..+... ...+..++|+|||+.|+..+ .+|...+|.+
T Consensus 323 ~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 323 YVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp EEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 99999887653 34333220 00367789999999887665 4666666644
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=1.5e-18 Score=187.12 Aligned_cols=302 Identities=12% Similarity=0.045 Sum_probs=199.2
Q ss_pred CcEEEEccceeeeeEeeeeccccCCc-----EEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeeeeEecCCC
Q psy6127 198 RTITKCSENLVRSYRVAKVFRENTDK-----INSLDYSSDGSLLISCSDD---------DQIIIYDCEQGTSKNTINSKK 263 (515)
Q Consensus 198 ~~~i~~wd~~~~~~~~~~~~~~h~~~-----I~~l~~spd~~~lasgs~d---------g~i~iwd~~~~~~~~~~~~~~ 263 (515)
++.+++|+ +.++++...+.+|... ...++|||||++|+.++.+ +.+.+||+.+++.. .+..+.
T Consensus 35 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~ 111 (740)
T 4a5s_A 35 ENNILVFN--AEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIP 111 (740)
T ss_dssp TTEEEEEE--TTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCC
T ss_pred CCcEEEEE--CCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCC
Confidence 67899999 7777777778887643 2347889999999999876 56679999988765 466677
Q ss_pred CceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEE-ecCCCCCe-----------------EEEEEcCCCCEEEEE
Q psy6127 264 YGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRY-FPGHVRKV-----------------SSLNLSPVDDSFISG 325 (515)
Q Consensus 264 ~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~-~~~h~~~v-----------------~~l~~~~~~~~l~s~ 325 (515)
..+...+|+|||+.++++. ++.|++||+.+++..+. ..++...+ ..+.|+|||+.|+.+
T Consensus 112 ~~~~~~~~SPdG~~la~~~---~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 112 NNTQWVTWSPVGHKLAYVW---NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp TTEEEEEECSSTTCEEEEE---TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred CcceeeEECCCCCEEEEEE---CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence 8899999999999998875 89999999988875542 22333323 348999999999987
Q ss_pred eCCC------------------------------------cEEEEEcCC---CC--eEEEEe-------cCCCeeEEEEC
Q psy6127 326 SYDK------------------------------------TVRVWDLRQ---PN--NVGMIQ-------LSGNKPIAAYD 357 (515)
Q Consensus 326 s~dg------------------------------------~i~iwd~~~---~~--~~~~~~-------~~~~~~~~~~s 357 (515)
+.|. +|++||+.+ ++ ....+. +...+..++|+
T Consensus 189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws 268 (740)
T 4a5s_A 189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA 268 (740)
T ss_dssp EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence 6332 478899988 73 222332 23346789999
Q ss_pred CCCCEEEEEECC----CcEEEEEeecCC----CCCceeeecCCCCCcCe-----EEEEEcCCCCEEE-EEEC-C--CcEE
Q psy6127 358 PEGLAFAIGVNS----DSIKLYDVRSYD----KGPFASFKCPGERGCEW-----TGLKFSPDGKLIL-VSTN-G--SIIR 420 (515)
Q Consensus 358 ~~~~~l~~g~~d----g~i~i~d~~~~~----~~~~~~~~~~~~~~~~i-----~~l~~sp~~~~l~-~~s~-d--g~i~ 420 (515)
|||+.++..... ..|.+||+.+++ ......+.. ..+...+ ..+.|+|||+.++ ..+. + ..|+
T Consensus 269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~-~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~ 347 (740)
T 4a5s_A 269 TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE-MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHIC 347 (740)
T ss_dssp ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE-ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEE
T ss_pred CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee-ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEE
Confidence 999977765432 379999998865 111111100 1222222 2678999999877 6653 3 3688
Q ss_pred EEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC-----C--cEEEEECCCCeEEEEEcC---CCCCCeEEEE
Q psy6127 421 LFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD-----G--QVHIWNAERGYKVCVLDG---DHPSAVQSLQ 490 (515)
Q Consensus 421 iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d-----g--~I~iwd~~~~~~~~~~~~---~h~~~V~~l~ 490 (515)
+||..+++......+ ...+..+. .+|++.|+..+.. + .|+..++..+.....+.. .....+..+.
T Consensus 348 ~~~~~~~~~~~lT~g----~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~ 422 (740)
T 4a5s_A 348 YFQIDKKDCTFITKG----TWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVS 422 (740)
T ss_dssp EEETTCSSCEESCCS----SSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEE
T ss_pred EEECCCCceEecccC----CEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEE
Confidence 889887665433322 22244443 3456655544332 3 344555554443334432 1235688999
Q ss_pred ECCCCCEEEEee-C----CEEEEcCC
Q psy6127 491 FNPKYHMLASAC-S----NMAFWIPT 511 (515)
Q Consensus 491 ~sp~~~~las~~-~----dv~iW~~~ 511 (515)
|+|++++++... + .+.+++.+
T Consensus 423 ~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 423 FSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp ECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred ECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 999999776543 2 25555543
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=6e-18 Score=166.27 Aligned_cols=274 Identities=8% Similarity=0.023 Sum_probs=196.3
Q ss_pred CCCEEEEEe------CCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEe--------eCCCeEEEEECCCC
Q psy6127 232 DGSLLISCS------DDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHAST--------KVDATLRYLSLHDN 297 (515)
Q Consensus 232 d~~~lasgs------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--------~~d~~v~vwd~~~~ 297 (515)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+|+++.++++.. ..++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 566666554 3689999999999998888877555 8999999999998762 13678999999998
Q ss_pred eeeEEecCC------CCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCeEEE-EecCCCeeEEEECCCC-CEEEEEE
Q psy6127 298 KYVRYFPGH------VRKVSSLNLSPVDDSFISGSY--DKTVRVWDLRQPNNVGM-IQLSGNKPIAAYDPEG-LAFAIGV 367 (515)
Q Consensus 298 ~~~~~~~~h------~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~s~~~-~~l~~g~ 367 (515)
+.+..+... ......++++|||++|+++.. +++|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEEC
Confidence 888776532 245678999999999998874 68999999999988877 65544 3335677765 6778888
Q ss_pred CCCcEEEEEeecCCCCCceee---ecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce--eEEeeccc-----
Q psy6127 368 NSDSIKLYDVRSYDKGPFASF---KCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNC--VQSLSGVL----- 437 (515)
Q Consensus 368 ~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~----- 437 (515)
.||.+.+|+........ ... ........++ .+.++|++..++..+.++.+.++|+..... ...+....
T Consensus 171 ~dg~~~~v~~~~~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVA-SQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp TTSSEEEEEECTTSSEE-EEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred CCCcEEEEEECCCCcEe-eeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 99999999986522110 000 1111112222 344467787888788899999999875532 12221100
Q ss_pred -c-CCCCCEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee-C
Q psy6127 438 -N-NNASPLEATFTPDSQFVASGST-----------DGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC-S 503 (515)
Q Consensus 438 -~-~~~~i~~~~~sp~g~~l~sgs~-----------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~-~ 503 (515)
. .......++|+|+++.++++.. .+.|.+||+.+++.+.++.. +. +.+++|+|||++|++++ +
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~-~~--p~~ia~spdg~~l~v~n~~ 325 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG-RD--ALSMTIDQQRNLMLTLDGG 325 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC-TT--CCEEEEETTTTEEEEECSS
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec-CC--eeEEEECCCCCEEEEeCCC
Confidence 0 0011234789999988877643 34799999999999999987 54 89999999999888876 4
Q ss_pred CEEEEcCCCC
Q psy6127 504 NMAFWIPTLS 513 (515)
Q Consensus 504 dv~iW~~~~~ 513 (515)
++.+||....
T Consensus 326 ~v~v~D~~t~ 335 (361)
T 2oiz_A 326 NVNVYDISQP 335 (361)
T ss_dssp CEEEEECSSS
T ss_pred eEEEEECCCC
Confidence 5999998754
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=7.9e-17 Score=152.79 Aligned_cols=245 Identities=11% Similarity=0.170 Sum_probs=181.2
Q ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecC------CCCceeEEEEecCCCeEEEEEeeCCCeEEE
Q psy6127 218 RENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINS------KKYGVDLIKFTHSKTTAIHASTKVDATLRY 291 (515)
Q Consensus 218 ~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~s~~~d~~v~v 291 (515)
.+|-..+.+++++|+++++++.+.++.|.+||.. ++....+.. +...+..+++.+.+..++++..+.++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4667789999999999988888889999999987 666665542 335688999964444555554223789999
Q ss_pred EECCCCeeeEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEec---CCCeeEEEECCCCCEEEEEE
Q psy6127 292 LSLHDNKYVRYFP-GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQL---SGNKPIAAYDPEGLAFAIGV 367 (515)
Q Consensus 292 wd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~~g~ 367 (515)
|| .+++.+..+. .+...+.+++++|+|+.+++...++.|.+||.. ++....+.. ...+..++++|+|+++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 5677666664 344678999999999988887788999999964 555555532 23478899999999888777
Q ss_pred CCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCC-cEEEEECCCCceeEEeeccccCCCCCEEE
Q psy6127 368 NSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS-IIRLFDAFNGNCVQSLSGVLNNNASPLEA 446 (515)
Q Consensus 368 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~i~~~ 446 (515)
.++.|++||.... ....+. ...+...+.+++++|+|+++++...++ .|.+||. +++.+..+..+.. ...+..+
T Consensus 183 ~~~~i~~~~~~g~---~~~~~~-~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~-~~~~~~i 256 (286)
T 1q7f_A 183 RAHCVKVFNYEGQ---YLRQIG-GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK-HAQCFDV 256 (286)
T ss_dssp GGTEEEEEETTCC---EEEEES-CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC-CSCEEEE
T ss_pred CCCEEEEEcCCCC---EEEEEc-cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCC-CCcceeE
Confidence 8999999997431 111111 112235678999999998888877775 9999995 5777776665432 2236789
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCC
Q psy6127 447 TFTPDSQFVASGSTDGQVHIWNAERG 472 (515)
Q Consensus 447 ~~sp~g~~l~sgs~dg~I~iwd~~~~ 472 (515)
+++|+|+++++ +.|+.|++|++...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EECCCCcEEEE-CCCCeEEEEEcccc
Confidence 99999987776 57999999998654
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=2.8e-17 Score=160.39 Aligned_cols=258 Identities=8% Similarity=0.090 Sum_probs=179.1
Q ss_pred CcEEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeC---CCeE
Q psy6127 222 DKINSLDYSSDGSLLISCS---------DDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKV---DATL 289 (515)
Q Consensus 222 ~~I~~l~~spd~~~lasgs---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~---d~~v 289 (515)
..+...++ ||++++... .++.|.+||+.+++... + ..+..++|+|+|+.+++++... ...|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 44666777 888887653 25789999999876543 3 5688899999999998887432 2348
Q ss_pred EEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCC---------------------------CcEEEEEcCCCCeE
Q psy6127 290 RYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYD---------------------------KTVRVWDLRQPNNV 342 (515)
Q Consensus 290 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---------------------------g~i~iwd~~~~~~~ 342 (515)
.+||+.+++.......+ . +..++|+|||+.|+.++.+ ..|.+||+.+++.+
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 88899888776555433 3 9999999999988887643 56999999988773
Q ss_pred EEEecCCCeeEEEECCCCCEEEEEECCC-------cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEEC
Q psy6127 343 GMIQLSGNKPIAAYDPEGLAFAIGVNSD-------SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTN 415 (515)
Q Consensus 343 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~ 415 (515)
..+... .+..++|+|+| +++++..++ ...+|.+.+++ ...+. .+ ..+..+ +|+|++|+.++.
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~---~~~l~---~~-~~~~~~--spdg~~l~~~~~ 234 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK---EEKMF---EK-VSFYAV--DSDGERILLYGK 234 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE---EEEEE---EE-ESEEEE--EECSSCEEEEEC
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc---eEEec---cC-cceeeE--CCCCCEEEEEEc
Confidence 444334 68889999999 777776542 45666665221 11221 11 344444 999999988775
Q ss_pred C--------CcEEEEECCCCceeEEeeccccCCCCCEE-EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCe
Q psy6127 416 G--------SIIRLFDAFNGNCVQSLSGVLNNNASPLE-ATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAV 486 (515)
Q Consensus 416 d--------g~i~iwd~~~~~~~~~~~~~~~~~~~i~~-~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 486 (515)
+ ..|.+|| +++....... +...+.. +.|+ ++ ++++++.++.+++| +.+++...... +.+.|
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~--~~~~v 304 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVMGILDE---VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK--GRHWI 304 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEEESSTT---CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC--SSSEE
T ss_pred cccCCccccceEEEEC--CCceEecccc---CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec--CCCeE
Confidence 4 3688888 5554333222 2233665 8899 88 89999999999999 87776654443 56789
Q ss_pred EEEEECCCCCEEEEeeCC---EEEEcCC
Q psy6127 487 QSLQFNPKYHMLASACSN---MAFWIPT 511 (515)
Q Consensus 487 ~~l~~sp~~~~las~~~d---v~iW~~~ 511 (515)
.+++|+| .++++++.+ .++|.++
T Consensus 305 ~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 305 MGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999999 566655532 4788764
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=5.8e-17 Score=157.19 Aligned_cols=243 Identities=12% Similarity=0.134 Sum_probs=181.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCeeeeEec-CCCCceeEEEEecCC
Q psy6127 221 TDKINSLDYSSDGSLLISCSDD------------------------DQIIIYDCEQGTSKNTIN-SKKYGVDLIKFTHSK 275 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~ 275 (515)
-+.+.+++++|+|+++++.+.+ ++|.+||..+++....+. .+-.....++++|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888877 479999999888877664 344578999999999
Q ss_pred CeEEEEEeeCCCeEEEEECCCCe-eeEEe---------cCCCCCeEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCCCeEE
Q psy6127 276 TTAIHASTKVDATLRYLSLHDNK-YVRYF---------PGHVRKVSSLNLSP-VDDSFISGS-YDKTVRVWDLRQPNNVG 343 (515)
Q Consensus 276 ~~l~~~s~~~d~~v~vwd~~~~~-~~~~~---------~~h~~~v~~l~~~~-~~~~l~s~s-~dg~i~iwd~~~~~~~~ 343 (515)
+ ++++. ..++.|++||..... .+..+ .++......++++| ++..+++.+ .++.|++|| .+++.+.
T Consensus 103 ~-l~v~d-~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 103 N-YWVTD-VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp C-EEEEE-TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred C-EEEEE-CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 8 44333 468999999986542 44544 34555789999999 788888876 689999999 5677776
Q ss_pred EEecC-----------CCeeEEEECCC-CCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEE
Q psy6127 344 MIQLS-----------GNKPIAAYDPE-GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLIL 411 (515)
Q Consensus 344 ~~~~~-----------~~~~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~ 411 (515)
.+... ..+..++++|+ +.++++...++.|++||..+++. ...+. ...+...+..++|+| +..+.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~--~~~~~-~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF--VREIK-HASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEEC-CTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE--EEEEe-ccccCCCcceeeecC-CEEEE
Confidence 66322 12678999998 77777777889999999875431 11221 223455677999999 43333
Q ss_pred EE-------ECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 412 VS-------TNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 412 ~~-------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
+. ..+..|++||..+++.+..+.........+..++++|+|.++++...++.|++|++.
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 32 334589999999999888875333344458999999999888888889999999975
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=2e-17 Score=176.16 Aligned_cols=296 Identities=11% Similarity=0.037 Sum_probs=186.3
Q ss_pred ccCCceeEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCcEE---------EEEEc--CCCCE-
Q psy6127 168 LESPHFVSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDKIN---------SLDYS--SDGSL- 235 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~---------~l~~s--pd~~~- 235 (515)
+.+|...+...++.+..... +...++.++...+|. .......+.+..|...+. ...|+ |||+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~---~~~~~~~~~~~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWW---VAPRPAEAGRATLVR--RRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEE---EEEETTTTTEEEEEE--ECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HhhcCCccceeEEcCCeEEE---EecCcccCCcEEEEE--ECCCCCcceeCCCCccccccccccCCccceeeeecCCCeE
Confidence 33444445555665543211 121224455666775 222333456677766666 66665 99998
Q ss_pred EEEEeC-CCeEEEEECC--CCeeeeEecC-----CCCceeEEEEecCCCeEEEEEeeCC--------CeEEEEECCC---
Q psy6127 236 LISCSD-DDQIIIYDCE--QGTSKNTINS-----KKYGVDLIKFTHSKTTAIHASTKVD--------ATLRYLSLHD--- 296 (515)
Q Consensus 236 lasgs~-dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~s~~~d--------~~v~vwd~~~--- 296 (515)
|+.++. +..|.+|+.. .......+.. |...+..++|+|||+.+++++.... ..|++||+.+
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 776654 4566667665 2034455555 5677899999999999988773211 5899999988
Q ss_pred ---CeeeEEec-CCCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEEcC-CC---CeEEEEec-CCCeeEEEECCC
Q psy6127 297 ---NKYVRYFP-GHVRKVSSLNLSPVDDSFISGSYDK--------TVRVWDLR-QP---NNVGMIQL-SGNKPIAAYDPE 359 (515)
Q Consensus 297 ---~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg--------~i~iwd~~-~~---~~~~~~~~-~~~~~~~~~s~~ 359 (515)
++. ..+. .+...+..++|+|||+.|+.++.++ .|++||+. ++ +....... ...+..+.|+||
T Consensus 174 ~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd 252 (662)
T 3azo_A 174 ADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD 252 (662)
T ss_dssp TCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred ccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence 554 4455 5667888999999999999887553 79999999 56 33333333 456888999999
Q ss_pred CCEEEEEECCCcEEEEEee--cCCCCCceeeecCCCCCcC--------eEEEEEcCCCCEEEEEECCCcEEEE--ECCCC
Q psy6127 360 GLAFAIGVNSDSIKLYDVR--SYDKGPFASFKCPGERGCE--------WTGLKFSPDGKLILVSTNGSIIRLF--DAFNG 427 (515)
Q Consensus 360 ~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~--------i~~l~~sp~~~~l~~~s~dg~i~iw--d~~~~ 427 (515)
|++++++..++..++|.+. +++ .......+... +..++|+|+++++++++. +.+++| |..++
T Consensus 253 g~l~~~~~~~~~~~l~~~~~~~~~-----~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 253 GSLIVATDRTGWWNLHRVDPATGA-----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp SCEEEEECTTSSCEEEEECTTTCC-----EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred CeEEEEECCCCCeEEEEEECCCCc-----eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 9977777778854454443 332 11111111111 457899999999999988 999999 55555
Q ss_pred ceeEEeeccccCCCCCEEEEEecCCC--EEEEEeCCC--cEEEEECCCCeEEEEEcC
Q psy6127 428 NCVQSLSGVLNNNASPLEATFTPDSQ--FVASGSTDG--QVHIWNAERGYKVCVLDG 480 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~i~~~~~sp~g~--~l~sgs~dg--~I~iwd~~~~~~~~~~~~ 480 (515)
+ +..+..+. ..+..+ ++++++ ++++++.+. .|++||+.+++.......
T Consensus 327 ~-~~~l~~~~---~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~ 378 (662)
T 3azo_A 327 E-LVDAAGPW---TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGAR 378 (662)
T ss_dssp E-EEECCSSC---CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESC
T ss_pred c-EEEecCCC---CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecC
Confidence 4 55555432 224544 144554 333444443 566677778776554433
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=2.8e-17 Score=159.57 Aligned_cols=277 Identities=13% Similarity=0.138 Sum_probs=194.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeE
Q psy6127 222 DKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVR 301 (515)
Q Consensus 222 ~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~ 301 (515)
..|.+++|+|++..++..+.++.++.| .++....+..+...+.+++|++++. ++++. ..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~-~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQ-LFLLD-VFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSC-EEEEE-TTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCC-EEEEE-CCCCEEEEEeCCCCcEEE
Confidence 457788999998888877888999999 3566677777777889999999987 33332 468999999999887665
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCCeEEEEe---cCCCeeEEEECCCCCEEEEEEC------
Q psy6127 302 YFPGHVRKVSSLNLSPVDDSFISGSYD----KTVRVWDLRQPNNVGMIQ---LSGNKPIAAYDPEGLAFAIGVN------ 368 (515)
Q Consensus 302 ~~~~h~~~v~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~~g~~------ 368 (515)
....+...+.+++++|+++++++...+ +.|.+||.+++.....+. ....+..++++|+|+++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 554567789999999999988877666 689999998887654432 2234788999999988776643
Q ss_pred CCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEE-ECCCcEEEEECCC-CceeEEee-----ccccCCC
Q psy6127 369 SDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVS-TNGSIIRLFDAFN-GNCVQSLS-----GVLNNNA 441 (515)
Q Consensus 369 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~-s~dg~i~iwd~~~-~~~~~~~~-----~~~~~~~ 441 (515)
.+.|..+|....+ ...+. .....+..++|+|++++++++ +.++.|.+||..+ +.....+. .... ..
T Consensus 161 ~~~l~~~~~~~~~---~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~ 233 (333)
T 2dg1_A 161 LGGVYYVSPDFRT---VTPII---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HE 233 (333)
T ss_dssp CEEEEEECTTSCC---EEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SS
T ss_pred CceEEEEeCCCCE---EEEee---cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CC
Confidence 2344444433221 11111 112246789999999876555 4578999999864 43332211 1111 12
Q ss_pred CCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCC------CeEEEEECCCCCEEEEee-C-----CEEEEc
Q psy6127 442 SPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPS------AVQSLQFNPKYHMLASAC-S-----NMAFWI 509 (515)
Q Consensus 442 ~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~------~V~~l~~sp~~~~las~~-~-----dv~iW~ 509 (515)
.+..++++++|+++++...++.|.+||. +++.+..+.. +.. .+.+++|+||+..|..++ . ...||.
T Consensus 234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~-~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~ 311 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI-PGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYT 311 (333)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC-TTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEE
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc-CCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEE
Confidence 3678999999998888777899999998 5677666654 322 689999999986665443 2 256776
Q ss_pred CCC
Q psy6127 510 PTL 512 (515)
Q Consensus 510 ~~~ 512 (515)
++.
T Consensus 312 ~~~ 314 (333)
T 2dg1_A 312 VNG 314 (333)
T ss_dssp EEC
T ss_pred Eec
Confidence 543
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.77 E-value=3.6e-15 Score=154.11 Aligned_cols=309 Identities=13% Similarity=0.073 Sum_probs=220.1
Q ss_pred eeCCCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeeEecCCCCceeEEE
Q psy6127 193 HSRSSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCE--QGTSKNTINSKKYGVDLIK 270 (515)
Q Consensus 193 ~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~ 270 (515)
.+..++..+.++| ..+++.+.++... ..+..+.|+|||+++++++.|+.|.+||+. +++.+..+.... ....++
T Consensus 171 V~~~~~~~V~viD--~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia 246 (567)
T 1qks_A 171 VTLRDAGQIALID--GSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIE 246 (567)
T ss_dssp EEETTTTEEEEEE--TTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEE
T ss_pred EEeCCCCeEEEEE--CCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeE
Confidence 3556677788888 6677777776543 356799999999999999999999999995 788888887643 467899
Q ss_pred Ee----cCCCeEEEEEeeCCCeEEEEECCCCeeeEEecC----------CCC-CeEEEEEcCCCCE-EEEEeCCCcEEEE
Q psy6127 271 FT----HSKTTAIHASTKVDATLRYLSLHDNKYVRYFPG----------HVR-KVSSLNLSPVDDS-FISGSYDKTVRVW 334 (515)
Q Consensus 271 ~~----~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~----------h~~-~v~~l~~~~~~~~-l~s~s~dg~i~iw 334 (515)
|+ |+|++++++. ..++++.++|..+.+.+..+.- |.. .+..+..++++.. +++...+|.|.++
T Consensus 247 ~s~~~~pDGk~l~v~n-~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 247 TSKMEGWEDKYAIAGA-YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp ECCSTTCTTTEEEEEE-EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EccccCCCCCEEEEEE-ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 99 6999988877 4689999999999988876542 222 6788999998774 4555667999999
Q ss_pred EcCCCCeEE--EEecCCCeeEEEECCCCCEEEEEE-CCCcEEEEEeecCCCCCceeeec--CCCCCcCeEEEEEcCCCCE
Q psy6127 335 DLRQPNNVG--MIQLSGNKPIAAYDPEGLAFAIGV-NSDSIKLYDVRSYDKGPFASFKC--PGERGCEWTGLKFSPDGKL 409 (515)
Q Consensus 335 d~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~l~~sp~~~~ 409 (515)
|....+... .+........+.|+|+|++++++. .++.|.++|+.+++. ...... ...|.+....+ ++|++..
T Consensus 326 d~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl--~~~i~vgg~~Phpg~g~~~-~~p~~g~ 402 (567)
T 1qks_A 326 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL--VAIEDTGGQTPHPGRGANF-VHPTFGP 402 (567)
T ss_dssp ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSSBCCTTCEEE-EETTTEE
T ss_pred ecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE--EEEEeccCcCCCCccceee-ECCCCCc
Confidence 998765433 334444567889999999987766 578999999987542 112222 12232222122 6887555
Q ss_pred EE-EEE-CCCcEEEEECCC-------CceeEEeeccccCCCCCEEEEEecCCCEEEEEeC-------CCcEEEEECCCC-
Q psy6127 410 IL-VST-NGSIIRLFDAFN-------GNCVQSLSGVLNNNASPLEATFTPDSQFVASGST-------DGQVHIWNAERG- 472 (515)
Q Consensus 410 l~-~~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~-------dg~I~iwd~~~~- 472 (515)
+. ++. .++.|.++|..+ .+.++.+...... -..+..+|+++++++... .+.|.++|+.+.
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g---~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 479 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG---SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMT 479 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCC
T ss_pred EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC---CEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccc
Confidence 54 443 468999999987 5677777654222 345788999999998763 358999999876
Q ss_pred ----e-EEEEEc-------CCCCCCeEEEEECCCCCEEEEe-------eCCEEEEcCCC
Q psy6127 473 ----Y-KVCVLD-------GDHPSAVQSLQFNPKYHMLASA-------CSNMAFWIPTL 512 (515)
Q Consensus 473 ----~-~~~~~~-------~~h~~~V~~l~~sp~~~~las~-------~~dv~iW~~~~ 512 (515)
. ....+. +.....+..+.|+|+|+.+..+ ++.+.|+|...
T Consensus 480 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 480 GDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp CSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred ccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 2 113332 1124578999999999977665 23488887654
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=5.4e-18 Score=168.36 Aligned_cols=267 Identities=12% Similarity=0.050 Sum_probs=173.1
Q ss_pred CCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeE--------
Q psy6127 197 SRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDL-------- 268 (515)
Q Consensus 197 ~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------- 268 (515)
++..+.+|+ ...++......++......+.|+|||++|+.++.++.|++||+.+++.......+......
T Consensus 58 g~~~l~~~d--~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~ 135 (396)
T 3c5m_A 58 GNRNYYLLN--LETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSD 135 (396)
T ss_dssp SSCEEEEEE--TTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTT
T ss_pred CCceEEEEE--CCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEecc
Confidence 344566666 4445544444444333344789999999999999999999999988776655544432222
Q ss_pred -----------EEEecCCCeEEEEE---eeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcC-CCCEEEEEeCC-----
Q psy6127 269 -----------IKFTHSKTTAIHAS---TKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSP-VDDSFISGSYD----- 328 (515)
Q Consensus 269 -----------~~~~~~~~~l~~~s---~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~d----- 328 (515)
..|+|+++.+++.. ...+..|++||+.+++..... .+...+..+.|+| +++.|+..+.+
T Consensus 136 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (396)
T 3c5m_A 136 CTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLV 214 (396)
T ss_dssp SSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSC
T ss_pred CCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCC
Confidence 24566666554432 024678999999988765544 4677899999999 78877766653
Q ss_pred -CcEEEEEcCCCCeEEEEecC--CCeeEEEECCCCCEEEEEECC-----CcEEEEEeecCCCCCceeeecCCCCCcCeEE
Q psy6127 329 -KTVRVWDLRQPNNVGMIQLS--GNKPIAAYDPEGLAFAIGVNS-----DSIKLYDVRSYDKGPFASFKCPGERGCEWTG 400 (515)
Q Consensus 329 -g~i~iwd~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~ 400 (515)
..|.+||+..++........ ..+..++|+|+|+.|+.++.+ +.|++||+.+++.. .+.... ...
T Consensus 215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~----~~~- 286 (396)
T 3c5m_A 215 DARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE---EVMVMP----PCS- 286 (396)
T ss_dssp SCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE---EEEECC----SEE-
T ss_pred CceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE---EeeeCC----CCC-
Confidence 36888998766544333321 136678999999988777544 44999998765421 111111 123
Q ss_pred EEEcC-CCCEEEEEE----------------CCCcEEEEECCCCceeEEeeccccCC--------CCCEEEEEecCCCEE
Q psy6127 401 LKFSP-DGKLILVST----------------NGSIIRLFDAFNGNCVQSLSGVLNNN--------ASPLEATFTPDSQFV 455 (515)
Q Consensus 401 l~~sp-~~~~l~~~s----------------~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~i~~~~~sp~g~~l 455 (515)
+.|+| +|+++++++ .++.|++||+.+++.. .+..+.... ..+..++|+|||+.|
T Consensus 287 ~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 365 (396)
T 3c5m_A 287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGV 365 (396)
T ss_dssp EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeE
Confidence 89999 999888765 3478999999887653 333322110 014567899999988
Q ss_pred EEEeC-CCc--EEEEECCCCeEE
Q psy6127 456 ASGST-DGQ--VHIWNAERGYKV 475 (515)
Q Consensus 456 ~sgs~-dg~--I~iwd~~~~~~~ 475 (515)
+.++. ++. |+.+++.+++..
T Consensus 366 ~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 366 LFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp EEEECTTSSCEEEEEECCTTCC-
T ss_pred EEEecCCCCceEEEEEEcccccc
Confidence 87764 454 455555555443
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=1e-15 Score=145.96 Aligned_cols=243 Identities=11% Similarity=0.068 Sum_probs=172.7
Q ss_pred CeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q psy6127 253 GTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVR 332 (515)
Q Consensus 253 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~ 332 (515)
+..+..+..+.....+++|+|+++.++.+. ..++.|..||..++ ...+..+...+.+++++|+|+++++...++.|.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~-~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSD-VRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEE-GGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEe-CCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 334445555566788999999998666555 46899999999887 566666778899999999999887777778999
Q ss_pred EEEcCCCCeEEEEec-----CCCeeEEEECCCCCEEEEEECC---------------CcEEEEEeecCCCCCceeeecCC
Q psy6127 333 VWDLRQPNNVGMIQL-----SGNKPIAAYDPEGLAFAIGVNS---------------DSIKLYDVRSYDKGPFASFKCPG 392 (515)
Q Consensus 333 iwd~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~g~~d---------------g~i~i~d~~~~~~~~~~~~~~~~ 392 (515)
+||..+++....... ...+..++++|+|+++++.+.. +.-.+|.+.... ..... .
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~~---~ 168 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG--TLSAP---I 168 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS--CEEEE---E
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC--CEEEe---e
Confidence 999988876544321 1235679999999988873211 112445444321 11111 2
Q ss_pred CCCcCeEEEEEcCCCCEEEEEECCCcEEEEECC-CCce---eEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEE
Q psy6127 393 ERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAF-NGNC---VQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWN 468 (515)
Q Consensus 393 ~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~-~~~~---~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd 468 (515)
........++|+|+++.+++.+.++.|++|++. +++. ...+ . .....+..++++++|+++++. ++.|.+||
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~--~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T--VEPGKTDGLRVDAGGLIWASA--GDGVHVLT 243 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C--CSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e--CCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence 334456799999999988767778899999987 5554 2333 1 123346789999999876665 78899999
Q ss_pred CCCCeEEEEEcCCCCCCeEEEEE-CCCCCEEEEeeCCEEEEcCCC
Q psy6127 469 AERGYKVCVLDGDHPSAVQSLQF-NPKYHMLASACSNMAFWIPTL 512 (515)
Q Consensus 469 ~~~~~~~~~~~~~h~~~V~~l~~-sp~~~~las~~~dv~iW~~~~ 512 (515)
.. ++.+..+.. +.. +++++| .|+++.|..++.+ .+|.++.
T Consensus 244 ~~-g~~~~~~~~-~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~ 284 (296)
T 3e5z_A 244 PD-GDELGRVLT-PQT-TSNLCFGGPEGRTLYMTVST-EFWSIET 284 (296)
T ss_dssp TT-SCEEEEEEC-SSC-CCEEEEESTTSCEEEEEETT-EEEEEEC
T ss_pred CC-CCEEEEEEC-CCC-ceeEEEECCCCCEEEEEcCC-eEEEEEc
Confidence 86 788887776 555 899999 6898888877765 4555443
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=7.6e-16 Score=149.30 Aligned_cols=242 Identities=11% Similarity=0.075 Sum_probs=175.4
Q ss_pred CCceeEEEEecCCCeEEEEEeeCC------------------------CeEEEEECCCCeeeEEec-CCCCCeEEEEEcC
Q psy6127 263 KYGVDLIKFTHSKTTAIHASTKVD------------------------ATLRYLSLHDNKYVRYFP-GHVRKVSSLNLSP 317 (515)
Q Consensus 263 ~~~v~~~~~~~~~~~l~~~s~~~d------------------------~~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~ 317 (515)
-..+.+++++|+|+.+++.. .+ +.|.+||..+++.+..+. ++-.....++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHR--GDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEEC--TTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeC--CCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence 35688999999987554433 34 479999999898877664 4556799999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCC-eEEEEec----------CCCeeEEEECC-CCCEEEEEE-CCCcEEEEEeecCCCCC
Q psy6127 318 VDDSFISGSYDKTVRVWDLRQPN-NVGMIQL----------SGNKPIAAYDP-EGLAFAIGV-NSDSIKLYDVRSYDKGP 384 (515)
Q Consensus 318 ~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~----------~~~~~~~~~s~-~~~~l~~g~-~dg~i~i~d~~~~~~~~ 384 (515)
+|+.+++...++.|++||..... .+..+.. -..+..++++| +++++++.+ .++.|++||... . .
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~--~ 177 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-K--F 177 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-C--E
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-C--E
Confidence 99988888889999999986542 4444421 12477899999 788888876 689999999432 2 1
Q ss_pred ceeeecCC-------CCCcCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEE
Q psy6127 385 FASFKCPG-------ERGCEWTGLKFSPD-GKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVA 456 (515)
Q Consensus 385 ~~~~~~~~-------~~~~~i~~l~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 456 (515)
...+.... .+......++++|+ +..+++...++.|++||..+++.+..+.... ....+..++|+| +..++
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS-FGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT-TTTCEEEEEEET-TEEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc-cCCCcceeeecC-CEEEE
Confidence 11111111 12234679999998 6666666678899999999899888875432 234478899999 43333
Q ss_pred E-------EeCCCcEEEEECCCCeEEEEEc--CCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCC
Q psy6127 457 S-------GSTDGQVHIWNAERGYKVCVLD--GDHPSAVQSLQFNPKYHMLASACSN--MAFWIPT 511 (515)
Q Consensus 457 s-------gs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~ 511 (515)
+ ...+..|++||..+++.+..+. ..+...+.+++++|+|.++++..++ +++|+++
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 3 3345589999999999999884 1267789999999999777776544 8888765
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=5.4e-16 Score=151.22 Aligned_cols=250 Identities=11% Similarity=0.083 Sum_probs=168.1
Q ss_pred CcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCC---C--eEEEEECCCCeeeeEecCCCCceeEEEEe
Q psy6127 198 RTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDD---D--QIIIYDCEQGTSKNTINSKKYGVDLIKFT 272 (515)
Q Consensus 198 ~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 272 (515)
+..+++|+ ...++... + ..+..++|||||++||.++.+ + .|.+|++.+++.......+ . +..++|+
T Consensus 42 ~~~l~~~d--~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIEN--LKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWN 112 (347)
T ss_dssp EEEEEEEE--TTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEEC
T ss_pred cceEEEEe--CCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeEC
Confidence 34466666 33333322 2 568899999999999988754 3 4888898887766554443 3 9999999
Q ss_pred cCCCeEEEEEee-------------------------CCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeC
Q psy6127 273 HSKTTAIHASTK-------------------------VDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSY 327 (515)
Q Consensus 273 ~~~~~l~~~s~~-------------------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 327 (515)
|+++.+++++.. ....|++||+.+++.+..+.. . .+..++|+|+| .++++..
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEEC
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEec
Confidence 999998887631 135799999999887455544 3 78899999999 7777765
Q ss_pred CC-------cEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEECC--------CcEEEEEeecCCCCCceeeecCC
Q psy6127 328 DK-------TVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNS--------DSIKLYDVRSYDKGPFASFKCPG 392 (515)
Q Consensus 328 dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~~~~~ 392 (515)
++ ...+|.+.+++....... ... ..++|+|+.++.++.+ ..|.+|| +++ ......
T Consensus 190 ~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-----~~~l~~ 259 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWEDGKEEKMFEK-VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-----VMGILD 259 (347)
T ss_dssp CCSSCCSSCCEEEEEEETTEEEEEEEE-ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-----EEESST
T ss_pred ccccccccccccEEEeCCCceEEeccC-cce--eeECCCCCEEEEEEccccCCccccceEEEEC--CCc-----eEeccc
Confidence 42 345554445544333333 223 3449999999887754 3577777 322 223334
Q ss_pred CCCcCeEE-EEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcE-EEEECC
Q psy6127 393 ERGCEWTG-LKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQV-HIWNAE 470 (515)
Q Consensus 393 ~~~~~i~~-l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I-~iwd~~ 470 (515)
.+...+.. +.|+ ++ .+++++.++.+++| +.+++...... . ...+.+++|+| .++++++.++.. .+|.+.
T Consensus 260 ~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 260 EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-G---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-S---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-C---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 45566776 8999 88 88889999999999 87665533332 2 33488899999 677777777654 777766
Q ss_pred CCeEEEEEcC
Q psy6127 471 RGYKVCVLDG 480 (515)
Q Consensus 471 ~~~~~~~~~~ 480 (515)
++ ...+..
T Consensus 331 -g~-~~~lt~ 338 (347)
T 2gop_A 331 -GE-EKQLTD 338 (347)
T ss_dssp -SS-EEECCC
T ss_pred -Cc-EEEecc
Confidence 55 334444
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=3.9e-15 Score=141.02 Aligned_cols=241 Identities=7% Similarity=0.146 Sum_probs=172.6
Q ss_pred CCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEec------CCCCCeEEEEEc-CCCCEEEEEeC-CCcEE
Q psy6127 261 SKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFP------GHVRKVSSLNLS-PVDDSFISGSY-DKTVR 332 (515)
Q Consensus 261 ~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~------~h~~~v~~l~~~-~~~~~l~s~s~-dg~i~ 332 (515)
++-..+.++++++++.. +++. ..++.|.+||.. ++.+..+. +|...+..+++. +++..+++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l-~v~~-~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDI-IVAD-TNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCE-EEEE-GGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCE-EEEE-CCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 34466889999999863 3333 468999999987 55665553 344678999994 66666665543 89999
Q ss_pred EEEcCCCCeEEEEecC--CCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEE
Q psy6127 333 VWDLRQPNNVGMIQLS--GNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLI 410 (515)
Q Consensus 333 iwd~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l 410 (515)
+|| .+++.+..+... ..+..++++|+|+++++...++.|.+||.... ....+. ...+...+.+++++|+|+.+
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~-~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---VLHKFG-CSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---EEEEEE-CTTTCSSEEEEEECSSSEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC---EEEEeC-CCCccCCcEEEEECCCCCEE
Confidence 999 667777666432 35788999999998888777899999996431 111121 11334467899999999877
Q ss_pred EEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCC-cEEEEECCCCeEEEEEcCC-CCCCeEE
Q psy6127 411 LVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDG-QVHIWNAERGYKVCVLDGD-HPSAVQS 488 (515)
Q Consensus 411 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~-h~~~V~~ 488 (515)
++...++.|++||. +++.+..+.... ....+..++++|+|+++++...++ .|.+||. +++.+..+... ....+.+
T Consensus 179 v~~~~~~~i~~~~~-~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 179 ISDNRAHCVKVFNY-EGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD 255 (286)
T ss_dssp EEEGGGTEEEEEET-TCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred EEECCCCEEEEEcC-CCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCccee
Confidence 77777899999997 556555554321 123478999999999888887776 9999995 56666666541 2234789
Q ss_pred EEECCCCCEEEEee-CCEEEEcCCC
Q psy6127 489 LQFNPKYHMLASAC-SNMAFWIPTL 512 (515)
Q Consensus 489 l~~sp~~~~las~~-~dv~iW~~~~ 512 (515)
++++|+|+++++.. +.+++|++..
T Consensus 256 i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 256 VALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEETTTEEEEEETTTEEEEEECSC
T ss_pred EEECCCCcEEEECCCCeEEEEEccc
Confidence 99999999887743 2399999864
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=1.2e-14 Score=140.89 Aligned_cols=247 Identities=9% Similarity=0.001 Sum_probs=173.0
Q ss_pred EeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCC----C
Q psy6127 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVD----A 287 (515)
Q Consensus 212 ~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d----~ 287 (515)
+....+.++...+.+++|+|+|++++++..++.|.+||.++++.......+...+.++++++++..++. + ..+ +
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~-~-~~~~~~~~ 112 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVC-Y-LGDFKSTG 112 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEE-E-CTTSSSCC
T ss_pred ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEE-e-CCCCCCCc
Confidence 344556677778899999999998888888999999999888766555456678999999999874443 3 234 6
Q ss_pred eEEEEECCCCeeeEEec--CCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCCeEEEEecCCCeeEEEECCC
Q psy6127 288 TLRYLSLHDNKYVRYFP--GHVRKVSSLNLSPVDDSFISGSY------DKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPE 359 (515)
Q Consensus 288 ~v~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~ 359 (515)
.|.+||.++++....+. .+...+.+++++|+|+.+++... .+.|..+|..+++..........+..++|+|+
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~d 192 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTD 192 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTT
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCC
Confidence 89999998876553332 34567999999999987776654 35566667666555444333344778999999
Q ss_pred CCEEEEE-ECCCcEEEEEeecCCCCCc----eeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEee
Q psy6127 360 GLAFAIG-VNSDSIKLYDVRSYDKGPF----ASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLS 434 (515)
Q Consensus 360 ~~~l~~g-~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 434 (515)
++.++++ +.++.|.+||+........ ........+ ..+..++++++|++.++...++.|.+||. +++.+..+.
T Consensus 193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~ 270 (333)
T 2dg1_A 193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL 270 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE
Confidence 9866554 4578999999864211100 001111111 35678999999998887778889999998 566666665
Q ss_pred cccc---CCCCCEEEEEecCCCEEEEEeCCC
Q psy6127 435 GVLN---NNASPLEATFTPDSQFVASGSTDG 462 (515)
Q Consensus 435 ~~~~---~~~~i~~~~~sp~g~~l~sgs~dg 462 (515)
.... +...+.+++|+||++.|+.++.++
T Consensus 271 ~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 271 IPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred cCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 3321 111378999999988777666553
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.74 E-value=9.9e-14 Score=131.75 Aligned_cols=280 Identities=9% Similarity=0.051 Sum_probs=196.1
Q ss_pred ccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeE-ecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC
Q psy6127 217 FRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNT-INSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH 295 (515)
Q Consensus 217 ~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~ 295 (515)
+..+...+.+++++++|++.++...++.|.+||.. ++.... ...+...+..+++.+++...+ +. ..++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~-~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWF-TE-NAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEE-EE-TTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEE-eC-CCCCeEEEECCC
Confidence 45566789999999999987776668899999988 554332 233456789999999886433 33 347889999986
Q ss_pred CCee-eEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe--cCCCeeEEEECCCCCEEEEEECCCcE
Q psy6127 296 DNKY-VRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ--LSGNKPIAAYDPEGLAFAIGVNSDSI 372 (515)
Q Consensus 296 ~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i 372 (515)
++. ...+......+..+++.|++..+++...++.|..||. +++...... ....+..++++++|+.+++...++.|
T Consensus 87 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 87 -GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred -CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 332 2222334567899999999988887777889999998 555443321 22447889999999888877677899
Q ss_pred EEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCC
Q psy6127 373 KLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDS 452 (515)
Q Consensus 373 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 452 (515)
..||. +++. ..... ......+.+++++++|+..++...++.|..||. +++... +... .....+..++++++|
T Consensus 165 ~~~~~-~g~~---~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~-~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 165 GRITE-SGDI---TEFKI-PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP-TPNARPHAITAGAGI 236 (299)
T ss_dssp EEECT-TCCE---EEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS-STTCCEEEEEECSTT
T ss_pred EEEcC-CCcE---EEeeC-CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC-CCCCCceeEEECCCC
Confidence 99987 4321 11111 223445779999999987666666789999998 666432 3221 123448899999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEE-EcCCCCCCeEEEEECCCCCEEEEee-CCEEEEcCCC
Q psy6127 453 QFVASGSTDGQVHIWNAERGYKVCV-LDGDHPSAVQSLQFNPKYHMLASAC-SNMAFWIPTL 512 (515)
Q Consensus 453 ~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~las~~-~dv~iW~~~~ 512 (515)
+++++...++.|..||. +++.... +.. +...+.++++ +++.+.++.+ +.+..++++.
T Consensus 237 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~-~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLTS-NNIIEEYPIQI-KSAEPHGICF-DGETIWFAMECDKIGKLTLIK 295 (299)
T ss_dssp CEEEEETTTTEEEEEET-TTEEEEEECSS-SSCCEEEEEE-CSSCEEEEETTTEEEEEEEC-
T ss_pred CEEEeccCCceEEEECC-CCceEEEeCCC-CCCccceEEe-cCCCEEEEecCCcEEEEEcCc
Confidence 97776657789999998 5654332 233 5567999999 9998877764 3366666543
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=2.7e-15 Score=145.29 Aligned_cols=277 Identities=12% Similarity=0.044 Sum_probs=192.8
Q ss_pred CCcEEEEccceeeeeEeeeecc------ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEE
Q psy6127 197 SRTITKCSENLVRSYRVAKVFR------ENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIK 270 (515)
Q Consensus 197 ~~~~i~~wd~~~~~~~~~~~~~------~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 270 (515)
.+..+..+| ..+++....+. ........+.+. +++..++...++.|.+||..+++.+.++.. ......++
T Consensus 15 ~~~~l~~~d--~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYD--PATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIH 90 (328)
T ss_dssp CCBEEEEEE--TTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEE
T ss_pred CCceEEEEE--CCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEE
Confidence 366677777 44445444331 122456778775 345555666679999999999999888853 46688999
Q ss_pred EecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCC-----CCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCeEE
Q psy6127 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHV-----RKVSSLNLSPVDDSFISGS--YDKTVRVWDLRQPNNVG 343 (515)
Q Consensus 271 ~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~ 343 (515)
+++++ .++++. ..++.|.+||..+++....+.... .....+++ . +..++.+. .++.|.++|.++++...
T Consensus 91 ~~~~g-~lyv~~-~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 91 FLSDE-KAYVTQ-IWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EEETT-EEEEEE-BSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred EeCCC-eEEEEE-CCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 99988 555554 368999999999998877665332 14556777 3 55555554 48999999999999888
Q ss_pred EEecCCCeeEEEECCCCCEEEEEECC----------CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEE
Q psy6127 344 MIQLSGNKPIAAYDPEGLAFAIGVNS----------DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVS 413 (515)
Q Consensus 344 ~~~~~~~~~~~~~s~~~~~l~~g~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~ 413 (515)
.+........+.++|+|++++++..+ +.|.++|..+.+. ...+.. ........++|+|++++++++
T Consensus 167 ~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--~~~~~~--~~g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 167 ELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV--EKQFKF--KLGDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp EEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--EEEEEC--CTTCCCEEEEECTTSCEEEEE
T ss_pred EEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE--EEEEec--CCCCCceeEEEecCCCEEEEE
Confidence 88776667889999999977776554 7899999876431 112221 112356799999999999887
Q ss_pred ECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecC-CCEEEEE----eCCCcEEEEECCCCeEEEEEcCCCCCCeEE
Q psy6127 414 TNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPD-SQFVASG----STDGQVHIWNAERGYKVCVLDGDHPSAVQS 488 (515)
Q Consensus 414 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~-g~~l~sg----s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 488 (515)
.. .|.+||..+++....... ......+..++++|+ +.+.++. ..++.|.+||.. ++.+.++.. ...-..
T Consensus 243 ~~--~v~~~d~~t~~~~~~~~~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~--G~~P~~ 316 (328)
T 3dsm_A 243 NN--DIWRMPVEADRVPVRPFL-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV--GIIPGA 316 (328)
T ss_dssp SS--SEEEEETTCSSCCSSCSB-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE--EESEEE
T ss_pred cc--EEEEEECCCCceeeeeee-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe--ccCcce
Confidence 65 899999988875321111 111234789999994 5555555 568899999998 988888763 233455
Q ss_pred EEE
Q psy6127 489 LQF 491 (515)
Q Consensus 489 l~~ 491 (515)
++|
T Consensus 317 ~~~ 319 (328)
T 3dsm_A 317 FCW 319 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=8.1e-16 Score=165.09 Aligned_cols=248 Identities=12% Similarity=0.078 Sum_probs=174.3
Q ss_pred ccCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCe-----
Q psy6127 219 ENTDKINSLDYSSDGSLLISCSDDD-----QIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDAT----- 288 (515)
Q Consensus 219 ~h~~~I~~l~~spd~~~lasgs~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~----- 288 (515)
+|...+..++|||||++||.++.++ +|++||+.+++.......+ ..+..++|+||++.+++++. ++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~--~~~~~~~~ 198 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAY--PQQDGKSD 198 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEEC--CCCSSCCS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEE--CCcccccc
Confidence 4656789999999999999876543 8999999999876543222 23678999999999988873 433
Q ss_pred -----------EEEEECCCCee----eEEecCCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEEcCC------CC-e
Q psy6127 289 -----------LRYLSLHDNKY----VRYFPGHVRKVSSLNLSPVDDSFISGSY-----DKTVRVWDLRQ------PN-N 341 (515)
Q Consensus 289 -----------v~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----dg~i~iwd~~~------~~-~ 341 (515)
|++|++.+++. +.....|...+..+.|+|||++|+.++. +..|.+||+.+ +. .
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 99999988752 2222335667889999999998887765 57899999986 43 2
Q ss_pred EEEEecCCCeeEEEECCCCCEEEEEECCC----cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCC
Q psy6127 342 VGMIQLSGNKPIAAYDPEGLAFAIGVNSD----SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS 417 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg 417 (515)
...+..........|+|+|+.|+..+..+ .|.+||+.+........+.. ......+..++|++++.++++...++
T Consensus 279 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 279 WVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP-EHEKDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-CCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred eEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC-CCCCCeEEEEEEEcCCEEEEEEEECC
Confidence 34443222223346889999888776543 58889987643111122221 11223677899998887888888887
Q ss_pred c--EEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEE-e---CCCcEEEEECCCCe
Q psy6127 418 I--IRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASG-S---TDGQVHIWNAERGY 473 (515)
Q Consensus 418 ~--i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sg-s---~dg~I~iwd~~~~~ 473 (515)
. |++|++.+++.+..+..+ ...+..+.++|+++.++.. + ..+.++.||+.+++
T Consensus 358 ~~~l~~~~~~~g~~~~~l~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 358 KNTLQLHDLATGALLKIFPLE---VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEEETTTCCEEEEECCC---SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEEECCCCCEEEecCCC---CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4 667787778777777654 3337788999998766533 2 34789999998876
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=4.5e-15 Score=141.47 Aligned_cols=243 Identities=9% Similarity=0.018 Sum_probs=172.1
Q ss_pred eccccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEEC
Q psy6127 216 VFRENTDKINSLDYSSDGS-LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL 294 (515)
Q Consensus 216 ~~~~h~~~I~~l~~spd~~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~ 294 (515)
.+..+.....+++|+|+|+ +++++..++.|..||..++ ...+..+...+.++++++++..++ +. ..++.|.+||.
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v-~~-~~~~~i~~~d~ 97 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIA-CS-HGLRRLERQRE 97 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEE-EE-TTTTEEEEECS
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEE-Ee-cCCCeEEEEcC
Confidence 3445566788999999998 7788888999999999877 566667778899999999997443 33 34689999999
Q ss_pred CCCeeeEEecCC----CCCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEEcCCCCeEEEEecCCCeeE
Q psy6127 295 HDNKYVRYFPGH----VRKVSSLNLSPVDDSFISGSY-----------------DKTVRVWDLRQPNNVGMIQLSGNKPI 353 (515)
Q Consensus 295 ~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 353 (515)
.+++........ ...+..++++|+|+++++.+. .+.|..+|.. ++.............
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG 176 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence 888765443221 234678999999998887321 3456566655 444433344445788
Q ss_pred EEECCCCCEEEEEECCCcEEEEEeec-CCC-CCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeE
Q psy6127 354 AAYDPEGLAFAIGVNSDSIKLYDVRS-YDK-GPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQ 431 (515)
Q Consensus 354 ~~~s~~~~~l~~g~~dg~i~i~d~~~-~~~-~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~ 431 (515)
++|+|+++.+++.+.++.|.+|++.. +.. .....+ ......+.+++++++|++.++. ++.|.+||.. ++.+.
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~ 250 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELG 250 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEE
Confidence 99999999997777789999999972 211 001111 2234455689999999866655 7889999976 77777
Q ss_pred EeeccccCCCCCEEEEE-ecCCCEEEEEeCCCcEEEEECCCCeE
Q psy6127 432 SLSGVLNNNASPLEATF-TPDSQFVASGSTDGQVHIWNAERGYK 474 (515)
Q Consensus 432 ~~~~~~~~~~~i~~~~~-sp~g~~l~sgs~dg~I~iwd~~~~~~ 474 (515)
.+..+. . +.+++| +|+++.|++++.++ +.-++.++.+.
T Consensus 251 ~~~~~~---~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 251 RVLTPQ---T-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEECSS---C-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEECCC---C-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 666432 2 788999 58999999888764 55566665543
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=8.5e-15 Score=141.77 Aligned_cols=255 Identities=10% Similarity=0.061 Sum_probs=181.9
Q ss_pred CCCeEEEEECCCCeeeeEec------CCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEE
Q psy6127 241 DDDQIIIYDCEQGTSKNTIN------SKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLN 314 (515)
Q Consensus 241 ~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~ 314 (515)
.++.|.++|.++++....+. ........+.+ ++..++++. ..++.|.+||..+++.+.++. .......++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~-~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVV-NNSHVIFAIDINTFKEVGRIT-GFTSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEE-GGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEE-cCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence 37899999999988765541 11234566766 355666665 468999999999999988885 346789999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCC------CeeEEEECCCCCEEEEEE--CCCcEEEEEeecCCCCCce
Q psy6127 315 LSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSG------NKPIAAYDPEGLAFAIGV--NSDSIKLYDVRSYDKGPFA 386 (515)
Q Consensus 315 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~s~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~ 386 (515)
++++++.+++...++.|.+||..+++....+.... ....+++ ++..+.++. .++.|.++|..+.+. ..
T Consensus 91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~--~~ 166 (328)
T 3dsm_A 91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV--VD 166 (328)
T ss_dssp EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE--EE
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE--EE
Confidence 99988544444489999999999999887776555 5666777 444555544 488999999987541 11
Q ss_pred eeecCCCCCcCeEEEEEcCCCCEEEEEECC----------CcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEE
Q psy6127 387 SFKCPGERGCEWTGLKFSPDGKLILVSTNG----------SIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVA 456 (515)
Q Consensus 387 ~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 456 (515)
.+.. ......++++|+|++++++..+ +.|.++|..+++....+..... ..+..++|+|++++++
T Consensus 167 ~i~~----g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g--~~p~~la~~~d~~~ly 240 (328)
T 3dsm_A 167 ELTI----GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG--DWPSEVQLNGTRDTLY 240 (328)
T ss_dssp EEEC----SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT--CCCEEEEECTTSCEEE
T ss_pred EEEc----CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC--CCceeEEEecCCCEEE
Confidence 2221 1223478999999877666554 7899999999987776653221 2478999999999998
Q ss_pred EEeCCCcEEEEECCCCeEEEE-EcCCCCCCeEEEEECC-CCCEEEEe------eCCEEEEcCC
Q psy6127 457 SGSTDGQVHIWNAERGYKVCV-LDGDHPSAVQSLQFNP-KYHMLASA------CSNMAFWIPT 511 (515)
Q Consensus 457 sgs~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~sp-~~~~las~------~~dv~iW~~~ 511 (515)
++.. .|.+||..+++.... +...+......++++| ++.+.++. ++.+.+|+.+
T Consensus 241 v~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 241 WINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 8755 899999998876421 1111245789999999 66666665 2448888876
No 188
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.71 E-value=9.4e-14 Score=136.54 Aligned_cols=265 Identities=12% Similarity=0.001 Sum_probs=187.0
Q ss_pred EEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeeEecCC-------
Q psy6127 200 ITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCS----------DDDQIIIYDCEQGTSKNTINSK------- 262 (515)
Q Consensus 200 ~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs----------~dg~i~iwd~~~~~~~~~~~~~------- 262 (515)
.+.++| ..+++.+.++.....+ .++++|||++++.+. .++.|.+||..+.+.+..+...
T Consensus 48 ~v~v~D--~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLD--AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEE--CCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 566666 5566777777654444 999999999999886 3678999999998888776543
Q ss_pred CCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEE-ecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCC
Q psy6127 263 KYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRY-FPGHVRKVSSLNLSPVDD-SFISGSYDKTVRVWDLRQPN 340 (515)
Q Consensus 263 ~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~ 340 (515)
......++|+|+|++++++....++.|.++| .+++.+.. +... . ++.+.|+++ .+++.+.||.+.++|. +++
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 1235689999999999988632368899999 99988877 5422 2 245556654 5677788999999999 887
Q ss_pred eEEEEe-----cC-CC-eeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecC-------CCCCcCeEEEEEcCC
Q psy6127 341 NVGMIQ-----LS-GN-KPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCP-------GERGCEWTGLKFSPD 406 (515)
Q Consensus 341 ~~~~~~-----~~-~~-~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~~~i~~l~~sp~ 406 (515)
...... .. .+ .....+.+++..++..+.++.+.+.|+..........+... .........+.++|+
T Consensus 198 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d 277 (373)
T 2mad_H 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS 277 (373)
T ss_pred EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC
Confidence 664322 11 11 12235566666655555788999999865422111111110 001122345889999
Q ss_pred CCEEEEEEC----------CCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCC-EEEEEe-CCCcEEEEECCCCeE
Q psy6127 407 GKLILVSTN----------GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQ-FVASGS-TDGQVHIWNAERGYK 474 (515)
Q Consensus 407 ~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~sgs-~dg~I~iwd~~~~~~ 474 (515)
++.++++.. ++.|.++|..+++.+..+.... ....++|+|||+ +++++. .++.|.+||..+++.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~----~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH----DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC----CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 998887653 3579999999999988886432 378999999999 777777 589999999999999
Q ss_pred EEEE
Q psy6127 475 VCVL 478 (515)
Q Consensus 475 ~~~~ 478 (515)
+..+
T Consensus 354 v~~i 357 (373)
T 2mad_H 354 DQST 357 (373)
T ss_pred Eeee
Confidence 9884
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=1.1e-14 Score=156.34 Aligned_cols=242 Identities=9% Similarity=-0.005 Sum_probs=170.4
Q ss_pred CCCceeEEEEecCCCeEEEEEeeCCC----eEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCc-------
Q psy6127 262 KKYGVDLIKFTHSKTTAIHASTKVDA----TLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT------- 330 (515)
Q Consensus 262 ~~~~v~~~~~~~~~~~l~~~s~~~d~----~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~------- 330 (515)
+...+..++|+|||+.+++++. .+| .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~-~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLS-ASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEE-ETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCEEEEEEEECCCCCEEEEEEc-CCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3346889999999999988763 233 8999999999877643222 23678999999999999988766
Q ss_pred ---------EEEEEcCCCCeE--EEEec---CCCeeEEEECCCCCEEEEEEC-----CCcEEEEEeec------CCCCCc
Q psy6127 331 ---------VRVWDLRQPNNV--GMIQL---SGNKPIAAYDPEGLAFAIGVN-----SDSIKLYDVRS------YDKGPF 385 (515)
Q Consensus 331 ---------i~iwd~~~~~~~--~~~~~---~~~~~~~~~s~~~~~l~~g~~-----dg~i~i~d~~~------~~~~~~ 385 (515)
|++|++.+++.. ..+.. ......+.|+|||++|+.++. +..+.+||+.+ +.. ..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~ 279 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KW 279 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CC
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-ce
Confidence 999999887632 22222 223568999999999988775 56899999976 321 12
Q ss_pred eeeecCCCCCcCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCce--eEEeeccccCCCCCEEEEEecCCCEEEEEe
Q psy6127 386 ASFKCPGERGCEWTGLKFSPDGKLILVSTNG----SIIRLFDAFNGNC--VQSLSGVLNNNASPLEATFTPDSQFVASGS 459 (515)
Q Consensus 386 ~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d----g~i~iwd~~~~~~--~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs 459 (515)
..+. .+...+.. .|+|+|+.|+..+.. +.|.+||+.++.. ...+..+... ..+..++|++++.++++..
T Consensus 280 ~~l~---~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 280 VKLI---DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK-DVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp EEEE---CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CEEEEEEEETTTEEEEEEE
T ss_pred EEee---CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC-CeEEEEEEEcCCEEEEEEE
Confidence 2222 22223333 588999988877653 3599999987742 2444433221 2367889998888888888
Q ss_pred CCCc--EEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEe-e-----CCEEEEcCCC
Q psy6127 460 TDGQ--VHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASA-C-----SNMAFWIPTL 512 (515)
Q Consensus 460 ~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~-~-----~dv~iW~~~~ 512 (515)
.|+. |++|++.+|+.+..+.. +.+.|..++++|++..++.. + +.+..|++..
T Consensus 355 ~~g~~~l~~~~~~~g~~~~~l~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGALLKIFPL-EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp ETTEEEEEEEETTTCCEEEEECC-CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred ECCEEEEEEEECCCCCEEEecCC-CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 8884 66778878888888877 67889999999998765533 2 2367777654
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.69 E-value=8.5e-15 Score=142.31 Aligned_cols=282 Identities=14% Similarity=0.089 Sum_probs=194.6
Q ss_pred cEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeeEecCCC-----
Q psy6127 199 TITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCS----------DDDQIIIYDCEQGTSKNTINSKK----- 263 (515)
Q Consensus 199 ~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs----------~dg~i~iwd~~~~~~~~~~~~~~----- 263 (515)
..+.+-| ..+++.+.++.....+ . ++++|||+++++++ .++.|.+||..+++.+.++....
T Consensus 59 ~~V~ViD--~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 59 TQQFVID--GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp EEEEEEE--TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CEEEEEE--CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 4555556 5566777776655555 4 99999999988776 36789999999999988875332
Q ss_pred --CceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CC
Q psy6127 264 --YGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQ-PN 340 (515)
Q Consensus 264 --~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~ 340 (515)
.....++|+|||++++++....++.|.++|..+++.+.++.-.. . ...+....+.+++.+.||++.+.++.+ ++
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 24667999999999988763347899999999999998875321 1 222333345777888999999999976 55
Q ss_pred eEEEEe-cC----CCe-eEEEEC-CCCCEEEEEECCCcEEEEEeecCCCCCceeeec-------CCCCCcCeEEEEEcCC
Q psy6127 341 NVGMIQ-LS----GNK-PIAAYD-PEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKC-------PGERGCEWTGLKFSPD 406 (515)
Q Consensus 341 ~~~~~~-~~----~~~-~~~~~s-~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~~i~~l~~sp~ 406 (515)
...... .. ..+ ....|. ++|++++ .+.+|.+.+.|+............. ..-....+..++++|+
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~ 290 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 290 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred EEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence 432221 10 111 113553 5665444 5678999999987643211111110 0111122335788999
Q ss_pred CCEEEEEEC----------CCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCC-EEEEEe-CCCcEEEEECCCCeE
Q psy6127 407 GKLILVSTN----------GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQ-FVASGS-TDGQVHIWNAERGYK 474 (515)
Q Consensus 407 ~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~sgs-~dg~I~iwd~~~~~~ 474 (515)
++.+++... .+.|.++|+.+++.++.+..... +..+++++|++ +|++.. .++.|.++|..+++.
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~----~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE----IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE----ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC----cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 998888653 25799999999999998875432 67999999997 676654 589999999999999
Q ss_pred EEEEcCCCCCCeEEEEECCC
Q psy6127 475 VCVLDGDHPSAVQSLQFNPK 494 (515)
Q Consensus 475 ~~~~~~~h~~~V~~l~~sp~ 494 (515)
+.++.. .+.-+.+.+++|
T Consensus 367 ~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 367 LRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp EEEECC--CCSSCCEEEECC
T ss_pred EEEecC--CCCCceeEECCc
Confidence 999975 344456677766
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.69 E-value=7.5e-16 Score=164.90 Aligned_cols=248 Identities=13% Similarity=0.048 Sum_probs=169.0
Q ss_pred cccCCcEEEEEEcCCCCEEE-----EEeCCCeEEEEECCCCeee-eEecCCCCceeEEEEecCCCeEEEEEeeCCCe---
Q psy6127 218 RENTDKINSLDYSSDGSLLI-----SCSDDDQIIIYDCEQGTSK-NTINSKKYGVDLIKFTHSKTTAIHASTKVDAT--- 288 (515)
Q Consensus 218 ~~h~~~I~~l~~spd~~~la-----sgs~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~--- 288 (515)
.+|...+.+++|||||++|| .|+.+.+|++||+.+++.+ .. .........++|+||++.+++++ .+..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~l~~~~--~d~~~~~ 193 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKGFYYEW--LPTDPSI 193 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSEEEEEE--CCCCTTS
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCEEEEEE--ecCCCCC
Confidence 35777899999999999999 4445578999999998865 21 11111126899999999988876 3444
Q ss_pred ----------EEEEECCCCe----eeEEecCCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCCeEEEEecCCC
Q psy6127 289 ----------LRYLSLHDNK----YVRYFPGHVRKVSSLNLSPVDDSFISGSYDK----TVRVWDLRQPNNVGMIQLSGN 350 (515)
Q Consensus 289 ----------v~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~ 350 (515)
|++|++.++. .+.....|...+..+.|+|||++|+.++.++ .|.+||..+++..........
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 273 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA 273 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc
Confidence 9999998876 3333445667899999999999888877666 677777766665554444444
Q ss_pred eeEEEECCCCCEEEEEEC----CCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECC-
Q psy6127 351 KPIAAYDPEGLAFAIGVN----SDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAF- 425 (515)
Q Consensus 351 ~~~~~~s~~~~~l~~g~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~- 425 (515)
.....+ ++|. ++..+. ++.|.+||+.++.......+. .......+..++|+ ++..+++...|+..++|.+.
T Consensus 274 ~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 274 KYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV-PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL 349 (695)
T ss_dssp CEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE-CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred eEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe-cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence 555555 6666 555443 578999998764321112222 12224467788888 66778888889988887654
Q ss_pred CCceeEEeeccccCCCCCEEEEEecCCCEEEEEe----CCCcEEEEECCCCeE
Q psy6127 426 NGNCVQSLSGVLNNNASPLEATFTPDSQFVASGS----TDGQVHIWNAERGYK 474 (515)
Q Consensus 426 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs----~dg~I~iwd~~~~~~ 474 (515)
+++....+..+ ....+..++++|+++.++... ..++|++||+.+++.
T Consensus 350 ~g~~~~~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 350 KGKPVRTVQLP--GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TCCEEEECCCS--SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCCeeEEecCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 45555555432 122356678899998776332 347899999988764
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=9.6e-15 Score=136.89 Aligned_cols=240 Identities=9% Similarity=0.025 Sum_probs=168.2
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeE
Q psy6127 223 KINSLDYSSDGSLLI-SCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVR 301 (515)
Q Consensus 223 ~I~~l~~spd~~~la-sgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~ 301 (515)
...+++++|+|++++ +.+.++.|.+||..++........+...+.++++.+++. ++++. . ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~-~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTD-F-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEE-T-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEc-C-CCEEEEEeCCCceEee
Confidence 678999999998776 446789999999765543322223335678899999887 55544 3 8899999987665433
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecC
Q psy6127 302 YFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSY 380 (515)
Q Consensus 302 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 380 (515)
........+..+++.|+|+.+++...++.|.+|+..+........ ....+..++++++|+.+++...++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 222333678999999999977777778899999876654433221 1234678999999997777767889999997754
Q ss_pred CCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeC
Q psy6127 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGST 460 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~ 460 (515)
. ...........+.+++++|+|..+++...++.|.+|+........... .....+..++++|+|+++++...
T Consensus 182 ~-----~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 182 N-----QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF---TGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp C-----EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC---CSCSCEEEEEECTTCCEEEEEGG
T ss_pred c-----eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc---CCCCCceeEEECCCCCEEEEECC
Confidence 3 111112222567899999999777666678899999986654332111 12234789999999998888888
Q ss_pred CCcEEEEECCCCe
Q psy6127 461 DGQVHIWNAERGY 473 (515)
Q Consensus 461 dg~I~iwd~~~~~ 473 (515)
++.|++++....+
T Consensus 254 ~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 254 NDRVVKLTSLEHH 266 (270)
T ss_dssp GTEEEEECCCGGG
T ss_pred CCEEEEEcCCCcc
Confidence 9999999987543
No 193
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=1.1e-13 Score=142.91 Aligned_cols=273 Identities=12% Similarity=0.093 Sum_probs=196.9
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC--CCeeeEEecCCC
Q psy6127 230 SSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH--DNKYVRYFPGHV 307 (515)
Q Consensus 230 spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~--~~~~~~~~~~h~ 307 (515)
+|.+.++++...+++|.++|..+++.+.++... ..+..+.|+|+++++++++ .++.|.+||+. +++.+..+....
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~--~dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIG--RDGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEE--TTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEc--CCCeEEEEECCCCCCcEeEEEecCC
Confidence 345567777788999999999999999888754 3567899999999988765 69999999995 778777776433
Q ss_pred CCeEEEEEc----CCCCEEEEEeC-CCcEEEEEcCCCCeEEEEecCC------------CeeEEEECCCCCEEEEE-ECC
Q psy6127 308 RKVSSLNLS----PVDDSFISGSY-DKTVRVWDLRQPNNVGMIQLSG------------NKPIAAYDPEGLAFAIG-VNS 369 (515)
Q Consensus 308 ~~v~~l~~~----~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~------------~~~~~~~s~~~~~l~~g-~~d 369 (515)
....++|+ |||+++++++. +++|.++|..+.+.+..+.... .+..+..++++..++.. ..+
T Consensus 241 -~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 241 -EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp -EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred -CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 46799999 69998777665 5999999999999988775321 35667888876665544 456
Q ss_pred CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeec-cc-cCCCCCEEE
Q psy6127 370 DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSG-VL-NNNASPLEA 446 (515)
Q Consensus 370 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~-~~-~~~~~i~~~ 446 (515)
|.|.++|...........+ ........+.|+|+|++++++. .++.|.++|+.+++....+.. .. .+...-..
T Consensus 320 g~v~~vd~~~~~~~~v~~i----~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~- 394 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEI----SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN- 394 (567)
T ss_dssp TEEEEEETTCSSEEEEEEE----ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-
T ss_pred CeEEEEecCCCccceeeee----eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-
Confidence 8999999865331111111 1223456889999999988776 578999999999988777654 21 22211112
Q ss_pred EEecCCCEE-EEEe-CCCcEEEEECCC-------CeEEEEEcCCCCCCeEEEEECCCCCEEEEee---------CCEEEE
Q psy6127 447 TFTPDSQFV-ASGS-TDGQVHIWNAER-------GYKVCVLDGDHPSAVQSLQFNPKYHMLASAC---------SNMAFW 508 (515)
Q Consensus 447 ~~sp~g~~l-~sgs-~dg~I~iwd~~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~las~~---------~dv~iW 508 (515)
-++|++..+ +++. .++.|.++|..+ .+.+.++.. ....-..+..+|+++++.... ..+.++
T Consensus 395 ~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~ 473 (567)
T 1qks_A 395 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF 473 (567)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence 268875544 4443 468999999988 678888875 333334577899999888754 258898
Q ss_pred cCCC
Q psy6127 509 IPTL 512 (515)
Q Consensus 509 ~~~~ 512 (515)
|+..
T Consensus 474 d~~~ 477 (567)
T 1qks_A 474 DIKA 477 (567)
T ss_dssp EGGG
T ss_pred ECCc
Confidence 8763
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=4e-14 Score=133.26 Aligned_cols=236 Identities=8% Similarity=0.037 Sum_probs=181.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEecCCC-CceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCC-CC
Q psy6127 232 DGSLLISCSDDDQIIIYDCEQGTSKNTINSKK-YGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHV-RK 309 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~-~~ 309 (515)
.+++|++++.|+.|.+||.++|+.+.++..+. ..+.++.+.|+|+.++ + .++.|..||. +++.+..+..+. ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s--~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--S--YSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--E--CBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--e--CCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 45789999999999999999999999998776 5789999999998665 3 4788999999 899998887653 57
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCeEEEEecCC-------CeeEEEECCCCCEEEEEECCCcEEEEEeecCC
Q psy6127 310 VSSLNLSPVDDSFISGSY-DKTVRVWDLRQPNNVGMIQLSG-------NKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYD 381 (515)
Q Consensus 310 v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~ 381 (515)
+.++.+.|+|+.+++.+. ++.+..+|. +++.+..+.... ....+++.++|+++++...++.|..||.. ++
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 889999999999999887 778888885 677776664321 23456789999999999999999999987 44
Q ss_pred CCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccC---CCCCEEEEEecCCCEEEEE
Q psy6127 382 KGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNN---NASPLEATFTPDSQFVASG 458 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~sg 458 (515)
. ...+.. . ....++.+.++|+.+++++.++.|..+|..+|+.+..+...... ...+..++..++|.++++.
T Consensus 157 ~--~w~~~~---~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 157 L--LNSVKL---S-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp E--EEEEEC---S-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred E--EEEEEC---C-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 1 111211 1 23446788999999999888889999999999998888643211 1236788888999988877
Q ss_pred eCC--------CcEEEEEC-CCCeEEEEEcC
Q psy6127 459 STD--------GQVHIWNA-ERGYKVCVLDG 480 (515)
Q Consensus 459 s~d--------g~I~iwd~-~~~~~~~~~~~ 480 (515)
... +..+++++ .+|+.+-.+..
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 231 WQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp ECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred ccCccccccccCCceEEEECCCCCEEEEecC
Confidence 421 23456666 57888877765
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.67 E-value=4.5e-13 Score=131.67 Aligned_cols=277 Identities=9% Similarity=-0.047 Sum_probs=188.7
Q ss_pred EEcCCCCEEEEEeC--CC---eEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEe--------eCCCeEEEEEC
Q psy6127 228 DYSSDGSLLISCSD--DD---QIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHAST--------KVDATLRYLSL 294 (515)
Q Consensus 228 ~~spd~~~lasgs~--dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--------~~d~~v~vwd~ 294 (515)
...|+++++++... .. +|.++|..+++.+.++.....+ .++++|+++.++++.. ..++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34578877777653 22 8899999999998888765544 9999999999988752 13678999999
Q ss_pred CCCeeeEEecCC-------CCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCeEEE-EecCCCeeEEEECCCC-CEE
Q psy6127 295 HDNKYVRYFPGH-------VRKVSSLNLSPVDDSFISGSY--DKTVRVWDLRQPNNVGM-IQLSGNKPIAAYDPEG-LAF 363 (515)
Q Consensus 295 ~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~s~~~-~~l 363 (515)
.+.+.+..+.-. ......++|+|||++|+.+.. ++.|.++| .+++.+.. +..... +.+.|++ +.+
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 998877765321 123558999999999998874 57899999 99998877 655432 4445554 455
Q ss_pred EEEECCCcEEEEEeecCCCCCceee-ecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--eeEEeecccc--
Q psy6127 364 AIGVNSDSIKLYDVRSYDKGPFASF-KCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGN--CVQSLSGVLN-- 438 (515)
Q Consensus 364 ~~g~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~~-- 438 (515)
++.+.||.+.++|. +++....... ..............+.+++..++..+.++.+.+.|+..+. ....+.....
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~ 259 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR 259 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc
Confidence 66778999999998 5442100000 0001111112235567766655555578899999987553 2222221100
Q ss_pred -----CCCCCEEEEEecCCCEEEEEeC----------CCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCC-EEEEee
Q psy6127 439 -----NNASPLEATFTPDSQFVASGST----------DGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYH-MLASAC 502 (515)
Q Consensus 439 -----~~~~i~~~~~sp~g~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~las~~ 502 (515)
.......++++|+++.++++.. ++.|.++|..+++.+.++.. .....+++|+|||+ .++++.
T Consensus 260 ~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEEc
Confidence 1112344789999998887653 35799999999999999974 34688999999999 666654
Q ss_pred ---CCEEEEcCCCC
Q psy6127 503 ---SNMAFWIPTLS 513 (515)
Q Consensus 503 ---~dv~iW~~~~~ 513 (515)
+++.+||....
T Consensus 338 ~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 338 AGTEVLHIYDAGAG 351 (373)
T ss_pred CCCCeEEEEECCCC
Confidence 44899987653
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.65 E-value=8.8e-14 Score=135.19 Aligned_cols=280 Identities=11% Similarity=0.056 Sum_probs=194.1
Q ss_pred EEEcCCCCEEEEEeC-----CCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEe--------eCCCeEEEEE
Q psy6127 227 LDYSSDGSLLISCSD-----DDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHAST--------KVDATLRYLS 293 (515)
Q Consensus 227 l~~spd~~~lasgs~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--------~~d~~v~vwd 293 (515)
....|+++.++.... ++.|.+.|..+++.+.++.....+ . ++++|+++.++++.. ..++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 446789998888875 689999999999999999866665 4 999999999988762 2367899999
Q ss_pred CCCCeeeEEecCC-------CCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEE
Q psy6127 294 LHDNKYVRYFPGH-------VRKVSSLNLSPVDDSFISGSY--DKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFA 364 (515)
Q Consensus 294 ~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 364 (515)
..+++.+..+.-. ......++|+|||++++.+.. ++.|.++|+.+++.+..+...+. ...+....+.++
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~ 193 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFF 193 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeE
Confidence 9999988776421 124567999999999888864 68999999999999998866542 222333445666
Q ss_pred EEECCCcEEEEEeecCCCCCceeeecCCCCCcCe-EEEEEc-CCCCEEEEEECCCcEEEEECCCCc--eeEEeeccc---
Q psy6127 365 IGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEW-TGLKFS-PDGKLILVSTNGSIIRLFDAFNGN--CVQSLSGVL--- 437 (515)
Q Consensus 365 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i-~~l~~s-p~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~--- 437 (515)
+.+.||.+.+.++...................++ ....|. ++|++++ .+.+|.+++.|..++. ....+....
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~ 272 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAE 272 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccc
Confidence 7777888888887652221100001111111122 124664 6776555 5668999999987654 333332000
Q ss_pred ----cCCCCCEEEEEecCCCEEEEEeC----------CCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCC-EEEEee
Q psy6127 438 ----NNNASPLEATFTPDSQFVASGST----------DGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYH-MLASAC 502 (515)
Q Consensus 438 ----~~~~~i~~~~~sp~g~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~las~~ 502 (515)
-.......++++|+++.++.... .+.|.+.|+.+++.+..+.. ...+++++++||++ +|.++.
T Consensus 273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v--g~~~~~lavs~D~~~~ly~tn 350 (386)
T 3sjl_D 273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDEKPLLYALS 350 (386)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEECSSSSCEEEEEE
T ss_pred ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC--CCCcceEEECCCCCeEEEEEc
Confidence 01112445788999998887643 25799999999999999875 34788999999997 665543
Q ss_pred ---CCEEEEcCCCC
Q psy6127 503 ---SNMAFWIPTLS 513 (515)
Q Consensus 503 ---~dv~iW~~~~~ 513 (515)
+++.++|....
T Consensus 351 ~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 351 TGDKTLYIHDAESG 364 (386)
T ss_dssp TTTTEEEEEETTTC
T ss_pred CCCCeEEEEECCCC
Confidence 45999987653
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.65 E-value=1.5e-13 Score=131.74 Aligned_cols=246 Identities=10% Similarity=0.105 Sum_probs=170.3
Q ss_pred ccCCcEEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCeeeeEec----CCCCceeEEEEecCCCeEEEEEeeCCC
Q psy6127 219 ENTDKINSLDYSSDGSLLIS-------CSDDDQIIIYDCEQGTSKNTIN----SKKYGVDLIKFTHSKTTAIHASTKVDA 287 (515)
Q Consensus 219 ~h~~~I~~l~~spd~~~las-------gs~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~s~~~d~ 287 (515)
+.-....+++|+++|+++++ +..++.|.+||..+++...... ++...+..+++.+++..+++++ ..+
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~--~~~ 92 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD--MRL 92 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE--TTT
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE--CCC
Confidence 33456789999999988877 5678999999988776543222 2446788999999844555554 355
Q ss_pred eEEEEECCCCeeeEE-ecC----CCCCeEEEEEcCCCCEEEEEeCC---------------CcEEEEEcCCCCeEEEEec
Q psy6127 288 TLRYLSLHDNKYVRY-FPG----HVRKVSSLNLSPVDDSFISGSYD---------------KTVRVWDLRQPNNVGMIQL 347 (515)
Q Consensus 288 ~v~vwd~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~~ 347 (515)
.|.+||.+ ++.... ... ....+.++++.++|+..++...+ +.|..||.. ++.......
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~ 170 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA 170 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence 89999988 665433 221 12458899999999887776655 567777766 555444433
Q ss_pred CCCeeEEEEC----CCCCEEEEE-ECCCcEEEEEeec-CCCCCceeeecCCCCC-cCeEEEEEcCCCCEEEEEECCCcEE
Q psy6127 348 SGNKPIAAYD----PEGLAFAIG-VNSDSIKLYDVRS-YDKGPFASFKCPGERG-CEWTGLKFSPDGKLILVSTNGSIIR 420 (515)
Q Consensus 348 ~~~~~~~~~s----~~~~~l~~g-~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~-~~i~~l~~sp~~~~l~~~s~dg~i~ 420 (515)
......++++ |+++.++++ ..++.|.+||... +.............+. ..+..++++++|+..++...++.|.
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 3446788999 999766555 4678999999873 2111111122222222 4567899999999888877888999
Q ss_pred EEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEE-eCCCcEEEEECCC
Q psy6127 421 LFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASG-STDGQVHIWNAER 471 (515)
Q Consensus 421 iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sg-s~dg~I~iwd~~~ 471 (515)
+||..+++....+..+. ..+.+++|+|+|+.|+.+ ..++.|..|++..
T Consensus 251 ~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988777666665432 348899999999955554 4567899999864
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=1.9e-12 Score=122.92 Aligned_cols=275 Identities=11% Similarity=0.043 Sum_probs=191.5
Q ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee-EecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC
Q psy6127 218 RENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKN-TINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD 296 (515)
Q Consensus 218 ~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~ 296 (515)
......+.+++++++|+..++...++.|.+||.. ++... .+......+..+++.+++.. +++. ..++.|..+|..
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l-~v~~-~~~~~v~~~d~~- 91 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDI-WFTE-NGANKIGKLSKK- 91 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCE-EEEE-TTTTEEEEECTT-
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCE-EEEe-cCCCeEEEECCC-
Confidence 3456788999999999988877778999999987 55433 22333467889999988864 3333 347889999988
Q ss_pred CeeeE-EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-e-cCCCeeEEEECCCCCEEEEEECCCcEE
Q psy6127 297 NKYVR-YFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI-Q-LSGNKPIAAYDPEGLAFAIGVNSDSIK 373 (515)
Q Consensus 297 ~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~~~~s~~~~~l~~g~~dg~i~ 373 (515)
++... ........+.++++.++++.+++...++.|..+|.. ++..... . ....+..++++++++..++...++.|.
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 55432 233344678999999999988877778899999987 5544322 2 234578899999999776666678899
Q ss_pred EEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCC
Q psy6127 374 LYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQ 453 (515)
Q Consensus 374 i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 453 (515)
.||. .+.. ..... ......+.+++++++|+..++....+.|.+||. +++.... ... .....+..++++++|+
T Consensus 171 ~~~~-~g~~---~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~-~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 171 RITN-TGKL---EEYPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIP-TPNARPHAITAGKNSE 242 (300)
T ss_dssp EECT-TCCE---EEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECS-STTCCEEEEEECSTTC
T ss_pred EECC-CCcE---EEeeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECC-CCCCCceEEEECCCCC
Confidence 9987 3221 12221 223346789999999987766666778999998 5554332 111 1233478999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEE-EcCCCCCCeEEEEECCCCCEEEEeeCCEEEEc
Q psy6127 454 FVASGSTDGQVHIWNAERGYKVCV-LDGDHPSAVQSLQFNPKYHMLASACSNMAFWI 509 (515)
Q Consensus 454 ~l~sgs~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~las~~~dv~iW~ 509 (515)
+.++...++.|..||. +++.... +.. ....+.+++++++|.+.++.. . .|+.
T Consensus 243 l~v~~~~~~~i~~~~~-~g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~-~-~i~~ 295 (300)
T 2qc5_A 243 IWFTEWGANQIGRITN-DNTIQEYQLQT-ENAEPHGITFGKDGSVWFALK-C-KIGK 295 (300)
T ss_dssp EEEEETTTTEEEEECT-TSCEEEEECCS-TTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred EEEeccCCCeEEEECC-CCcEEEEECCc-cCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence 7776666789999998 4544332 332 456688999999999777765 4 4443
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=4.2e-14 Score=133.10 Aligned_cols=211 Identities=11% Similarity=0.099 Sum_probs=163.9
Q ss_pred EEeeCCCeEEEEECCCCeeeEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC--CCeeEEEEC
Q psy6127 281 ASTKVDATLRYLSLHDNKYVRYFPGHV-RKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS--GNKPIAAYD 357 (515)
Q Consensus 281 ~s~~~d~~v~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~s 357 (515)
++++.++.|++||.++++.+.++..+. ..+.++.+.|+|+.++ +.++.|..||. +++.+..+... ..+.++.+.
T Consensus 9 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~ 85 (276)
T 3no2_A 9 VGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARIL 85 (276)
T ss_dssp EECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEEC
T ss_pred EeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEEC
Confidence 344689999999999999999998776 5789999999999888 45788999999 89888888664 356788999
Q ss_pred CCCCEEEEEEC-CCcEEEEEeecCCCCCceeeecCC---CCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEe
Q psy6127 358 PEGLAFAIGVN-SDSIKLYDVRSYDKGPFASFKCPG---ERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSL 433 (515)
Q Consensus 358 ~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 433 (515)
|+|+.+++.+. ++.+..+|.. ++ ....+.... .+......+++.++|+++++...++.|..||.. |+.+..+
T Consensus 86 ~dG~~lv~~~~~~~~v~~vd~~-Gk--~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~ 161 (276)
T 3no2_A 86 PDGNALVAWCGHPSTILEVNMK-GE--VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSV 161 (276)
T ss_dssp TTSCEEEEEESTTEEEEEECTT-SC--EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CCCCEEEEecCCCCEEEEEeCC-CC--EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEE
Confidence 99999999887 6667666642 22 111222111 111234466789999999999999999999987 9988888
Q ss_pred eccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCC-----CCCCeEEEEECCCCCEEEEee
Q psy6127 434 SGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGD-----HPSAVQSLQFNPKYHMLASAC 502 (515)
Q Consensus 434 ~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~las~~ 502 (515)
... ..+..+...++|+++++++.++.|..+|..+|+.+.++... ....+..++..++|.++++..
T Consensus 162 ~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 162 KLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp ECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred ECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 753 22567888999999999988889999999999999888631 123378999999999988874
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.64 E-value=6.1e-14 Score=131.38 Aligned_cols=237 Identities=9% Similarity=0.012 Sum_probs=161.4
Q ss_pred ceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEE
Q psy6127 265 GVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGM 344 (515)
Q Consensus 265 ~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 344 (515)
...++++.+++. +++++...++.|.+||..++........+...+.++++.++++.+++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678899999987 4441324688999999866554332233445688999999998666555 88999999876654322
Q ss_pred E-ecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEE
Q psy6127 345 I-QLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFD 423 (515)
Q Consensus 345 ~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd 423 (515)
. .....+..++++++|+.+++...++.|.+|+..+.. ...........+.+++++|+|+.+++...++.|.+||
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-----QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-----CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-----eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 1 122457889999999988777778899999654322 1111112223456899999998776666778999999
Q ss_pred CCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeC
Q psy6127 424 AFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS 503 (515)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~ 503 (515)
............ ....+..++++++|.++++...++.|.+|+........ ....+...+.+++++|+|+++++..+
T Consensus 178 ~~~~~~~~~~~~---~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 178 AESNNQVVLPFT---DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp TTTCCEEECCCS---SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred cCCCceEeeccc---CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECC
Confidence 877654332221 12347899999999877777778899999987654433 32224467899999999998777665
Q ss_pred C--EEEEcCCC
Q psy6127 504 N--MAFWIPTL 512 (515)
Q Consensus 504 d--v~iW~~~~ 512 (515)
+ +++++++.
T Consensus 254 ~~~v~~~~~~~ 264 (270)
T 1rwi_B 254 NDRVVKLTSLE 264 (270)
T ss_dssp GTEEEEECCCG
T ss_pred CCEEEEEcCCC
Confidence 4 77777654
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=1.9e-14 Score=154.05 Aligned_cols=271 Identities=9% Similarity=0.013 Sum_probs=174.3
Q ss_pred cCCCCEEEEEeCCC---e--EEEEECCCCeeeeEec------CCCCceeEEEEecCCCeEEEEEe---eCCCeEEEEECC
Q psy6127 230 SSDGSLLISCSDDD---Q--IIIYDCEQGTSKNTIN------SKKYGVDLIKFTHSKTTAIHAST---KVDATLRYLSLH 295 (515)
Q Consensus 230 spd~~~lasgs~dg---~--i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~---~~d~~v~vwd~~ 295 (515)
+|+|++++....++ . +.+.+...++....+. +|...+..++|+|||+.+++... +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 36777776665443 2 3334444444333222 34457899999999999887753 234689999999
Q ss_pred CCeeeEEecCCCCCe--EEEEEcCCCCEEEEEeCCCc-------------EEEEEcCCCCe--EEEEec---CCCeeEEE
Q psy6127 296 DNKYVRYFPGHVRKV--SSLNLSPVDDSFISGSYDKT-------------VRVWDLRQPNN--VGMIQL---SGNKPIAA 355 (515)
Q Consensus 296 ~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~s~dg~-------------i~iwd~~~~~~--~~~~~~---~~~~~~~~ 355 (515)
+++.+. ..+...+ ..++|+|||+.|+.++.|.. |++|++.++.. ...+.. ...+..+.
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 988651 1122222 68999999999999998876 99999998763 233322 23467899
Q ss_pred ECCCCCEEEEEECCC----cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCC
Q psy6127 356 YDPEGLAFAIGVNSD----SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTN----GSIIRLFDAFNG 427 (515)
Q Consensus 356 ~s~~~~~l~~g~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~----dg~i~iwd~~~~ 427 (515)
|+|||++++.++.++ .|.+++..+. ....+.. +...+....+ |+|. ++..+. ++.|.+||+.++
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~---~~~~l~~---~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGEK---DFRLLVK---GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTCS---SCEEEEE---CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCCC---ceEEeec---CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence 999999998877665 4555543222 1222221 2223345555 5666 555443 578999999877
Q ss_pred ce--eEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC-CCeEEEEEcCCCCCCeEEEEECCCCCEEEEee--
Q psy6127 428 NC--VQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE-RGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC-- 502 (515)
Q Consensus 428 ~~--~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~-- 502 (515)
.. ...+..+. ....+..++|+ ++.++++...|+..++|.+. +++....+...+.+.|..++++|++..++...
T Consensus 306 ~~~~~~~l~~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss 383 (695)
T 2bkl_A 306 ARASWKEIVPED-SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS 383 (695)
T ss_dssp SGGGCEEEECCC-SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred CccCCeEEecCC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 53 23333222 12236778888 67788888899988887654 46666666552367788899999987666332
Q ss_pred ----CCEEEEcCCC
Q psy6127 503 ----SNMAFWIPTL 512 (515)
Q Consensus 503 ----~dv~iW~~~~ 512 (515)
+.+.+|++..
T Consensus 384 ~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 384 FTTPRQIYKTSVST 397 (695)
T ss_dssp TTEEEEEEEEETTT
T ss_pred CCCCCEEEEEECCC
Confidence 2377787754
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.63 E-value=1.2e-13 Score=136.64 Aligned_cols=268 Identities=12% Similarity=0.088 Sum_probs=191.4
Q ss_pred cEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeeEecCC------
Q psy6127 199 TITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCS----------DDDQIIIYDCEQGTSKNTINSK------ 262 (515)
Q Consensus 199 ~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs----------~dg~i~iwd~~~~~~~~~~~~~------ 262 (515)
..+.+.| ..+++.+.++..-..+ .++++|||++|+++. .++.|.++|..+++.+.++...
T Consensus 99 ~~VsVID--~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVID--GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEE--TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEE--CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 4566666 5667777777655556 899999999988876 3678999999999998887532
Q ss_pred -CCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCC
Q psy6127 263 -KYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVD-DSFISGSYDKTVRVWDLRQPN 340 (515)
Q Consensus 263 -~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~ 340 (515)
......+.|+|++++++++....++.|.+.|..+++.+.++.-.. . ....|++ ..+++.+.||.+.+.+..+++
T Consensus 175 ~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 175 VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 234567899999999988763236899999999999988776321 1 2334443 566777788888888886665
Q ss_pred eEEEE----ecCCC--eeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCC-------CCcCeEEEEEcCCC
Q psy6127 341 NVGMI----QLSGN--KPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGE-------RGCEWTGLKFSPDG 407 (515)
Q Consensus 341 ~~~~~----~~~~~--~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~i~~l~~sp~~ 407 (515)
..... ..... ...+.+.+++..++..+..+.+.+.|................. .......++++|++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 54321 11111 1235679999988888888999999986532111111111000 00111237899999
Q ss_pred CEEEEEEC----------CCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCC-EEEEEe-CCCcEEEEECCCCeEE
Q psy6127 408 KLILVSTN----------GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQ-FVASGS-TDGQVHIWNAERGYKV 475 (515)
Q Consensus 408 ~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~sgs-~dg~I~iwd~~~~~~~ 475 (515)
+++++... ++.|.++|..+.+.+..+..... ...++|+|||+ ++++.. .++.|.++|..+++.+
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~----P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE----IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE----ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC----cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 98877642 35799999999999998875432 67999999999 888887 5899999999999999
Q ss_pred EEE
Q psy6127 476 CVL 478 (515)
Q Consensus 476 ~~~ 478 (515)
.++
T Consensus 407 ~tI 409 (426)
T 3c75_H 407 RSV 409 (426)
T ss_dssp EEE
T ss_pred EEe
Confidence 997
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=7e-14 Score=150.72 Aligned_cols=247 Identities=12% Similarity=0.070 Sum_probs=163.8
Q ss_pred ccCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeC--------
Q psy6127 219 ENTDKINSLDYSSDGSLLISCSDD-----DQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKV-------- 285 (515)
Q Consensus 219 ~h~~~I~~l~~spd~~~lasgs~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~-------- 285 (515)
+|...+..++|||||++||.++.+ .+|++||+.+++.+.. ..+...+..++|+|| +.+++++...
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 455578899999999999988754 4699999999887543 112222357899999 8888876321
Q ss_pred ----CCeEEEEECCCCee--eEEe--cCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCC--C-eEEEEecCC
Q psy6127 286 ----DATLRYLSLHDNKY--VRYF--PGHVRKVSSLNLSPVDDSFISGSYDK-----TVRVWDLRQP--N-NVGMIQLSG 349 (515)
Q Consensus 286 ----d~~v~vwd~~~~~~--~~~~--~~h~~~v~~l~~~~~~~~l~s~s~dg-----~i~iwd~~~~--~-~~~~~~~~~ 349 (515)
...|++|++.++.. ...+ ..+...+..+.|+|||++|+..+.++ .|.+||+.++ + .........
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 22499999977652 2233 33444689999999999888877544 8999999887 4 333333333
Q ss_pred CeeEEEECCCCCEEEEEECC----CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy6127 350 NKPIAAYDPEGLAFAIGVNS----DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAF 425 (515)
Q Consensus 350 ~~~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~ 425 (515)
..... ++|+|+.|+..+.+ +.|.+||+.+.. .....+. ..+...+..++++ ++..+++...|+..++|.+.
T Consensus 318 ~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~--~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 318 AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVV--PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEE--CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEe--cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 33333 45899999888764 458899987632 1111222 2334456677887 55677778888887777554
Q ss_pred -CCceeEEeeccccCCCCCEEEEEecCCCEEEEE----eCCCcEEEEECCCCeE
Q psy6127 426 -NGNCVQSLSGVLNNNASPLEATFTPDSQFVASG----STDGQVHIWNAERGYK 474 (515)
Q Consensus 426 -~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sg----s~dg~I~iwd~~~~~~ 474 (515)
+++....+... ....+..+.++|+++.++.. ...++|++||+.+++.
T Consensus 393 ~~g~~~~~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 393 LDGKPAGAVSLP--GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TTSCEEEECBCS--SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCCCceeeccCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 45555555431 23347788999998765532 2347899999988873
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.59 E-value=4.2e-13 Score=144.58 Aligned_cols=273 Identities=10% Similarity=0.057 Sum_probs=173.3
Q ss_pred cCCCCEEEEEeCCCe---EEEEEC--C---CCeeeeEe------cCCCCceeEEEEecCCCeEEEEEeeCC----CeEEE
Q psy6127 230 SSDGSLLISCSDDDQ---IIIYDC--E---QGTSKNTI------NSKKYGVDLIKFTHSKTTAIHASTKVD----ATLRY 291 (515)
Q Consensus 230 spd~~~lasgs~dg~---i~iwd~--~---~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~s~~~d----~~v~v 291 (515)
+|||++++....++. -.+|.. . .++....+ .++...+..++|+|||+.+++++. .+ ..|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~-~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQ-DGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEE-ETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEc-CCCCceEEEEE
Confidence 378888776664432 445543 3 33322221 123346889999999999988763 22 36999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCc--------------EEEEEcCCCCe--EEEEecCC---Cee
Q psy6127 292 LSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKT--------------VRVWDLRQPNN--VGMIQLSG---NKP 352 (515)
Q Consensus 292 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~--------------i~iwd~~~~~~--~~~~~~~~---~~~ 352 (515)
||+.+++.+... .+...+..++|+|| +.|+.++.|+. |++|++.++.. ...+.... ...
T Consensus 194 ~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 194 VGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp EETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred EECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 999999876532 12222357899999 98888887654 89999987763 23332222 367
Q ss_pred EEEECCCCCEEEEEECCC-----cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC----CcEEEEE
Q psy6127 353 IAAYDPEGLAFAIGVNSD-----SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG----SIIRLFD 423 (515)
Q Consensus 353 ~~~~s~~~~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d----g~i~iwd 423 (515)
.+.|+|||++++..+.++ .|.+||+.++.......+.. +....... ++|+|+.|+..+.+ +.|.+||
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d 347 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP---DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVD 347 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC---SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC---CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence 899999999998877544 89999998752110122221 12223333 34899988888764 4599999
Q ss_pred CCCCc-eeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC-CCeEEEEEcCCCCCCeEEEEECCCCCEEEEe
Q psy6127 424 AFNGN-CVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE-RGYKVCVLDGDHPSAVQSLQFNPKYHMLASA 501 (515)
Q Consensus 424 ~~~~~-~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~las~ 501 (515)
+.++. ....+..+. ...+..++++ ++.++++...|+..+||.+. +++....+...+.+.|..++++|++..++..
T Consensus 348 ~~~~~~~~~~l~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 348 LSGSTPRFDTVVPES--KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp CSSSSCEEEEEECCC--SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred CCCCccccEEEecCC--CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 88752 333333222 2225667777 56778888889887777554 4666666654246779999999988755532
Q ss_pred --e----CCEEEEcCCC
Q psy6127 502 --C----SNMAFWIPTL 512 (515)
Q Consensus 502 --~----~dv~iW~~~~ 512 (515)
+ +.+.+|++..
T Consensus 425 ~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 425 FSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEETTEEEEEEEEETTT
T ss_pred EcCCCCCCEEEEEECCC
Confidence 2 2377777654
No 205
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.58 E-value=3e-11 Score=114.46 Aligned_cols=261 Identities=10% Similarity=0.041 Sum_probs=173.2
Q ss_pred CCCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-eEecCCCCceeEEEEecC
Q psy6127 196 SSRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSK-NTINSKKYGVDLIKFTHS 274 (515)
Q Consensus 196 ~~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~ 274 (515)
..+..+..++.. ..... ..+..+...+.+++++++|++.++...++.|..||.. ++.. ..+......+..+++.++
T Consensus 33 ~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~ 109 (299)
T 2z2n_A 33 HKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPN 109 (299)
T ss_dssp TTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred cCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCC
Confidence 334456666633 22211 1223356789999999999988877778899999986 4332 222234567889999998
Q ss_pred CCeEEEEEeeCCCeEEEEECCCCeeeE-EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE-e-cCCCe
Q psy6127 275 KTTAIHASTKVDATLRYLSLHDNKYVR-YFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI-Q-LSGNK 351 (515)
Q Consensus 275 ~~~l~~~s~~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~~ 351 (515)
+.. +++. ..++.|..||. +++... ....+...+..+++.++++..++...++.|..||. +++..... . ....+
T Consensus 110 g~l-~v~~-~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 185 (299)
T 2z2n_A 110 GDI-WFTE-MNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGP 185 (299)
T ss_dssp SCE-EEEE-TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCE-EEEe-cCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcc
Confidence 854 3333 35789999998 554433 23335567899999999988777777789999998 66654431 1 22347
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeE
Q psy6127 352 PIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQ 431 (515)
Q Consensus 352 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~ 431 (515)
..++++++|++.++...++.|..||. ++. ...... ......+.+++++++|+..++...++.|..||. +++ ..
T Consensus 186 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~ 258 (299)
T 2z2n_A 186 VGITKGNDDALWFVEIIGNKIGRITT-SGE---ITEFKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IE 258 (299)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCC---EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EE
T ss_pred eeEEECCCCCEEEEccCCceEEEECC-CCc---EEEEEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eE
Confidence 78999999997777666889999998 433 112222 223456789999999986665557789999998 454 33
Q ss_pred EeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q psy6127 432 SLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGY 473 (515)
Q Consensus 432 ~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~ 473 (515)
.+... .....+.++++ ++|.+.++.. .+.+..++.++++
T Consensus 259 ~~~~~-~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQ-IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECS-SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCC-CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 33221 22344789999 8888777654 5667778876653
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.57 E-value=1e-12 Score=130.06 Aligned_cols=275 Identities=12% Similarity=0.036 Sum_probs=190.1
Q ss_pred CCCCEEEEEeCC-----CeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEe--------eCCCeEEEEECCCC
Q psy6127 231 SDGSLLISCSDD-----DQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHAST--------KVDATLRYLSLHDN 297 (515)
Q Consensus 231 pd~~~lasgs~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--------~~d~~v~vwd~~~~ 297 (515)
|+++.+++.... +.|.++|..+++.+.++.....+ .++++|+++.++++.. ..++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 467766666542 69999999999999999876666 8999999999988862 14678999999999
Q ss_pred eeeEEecCC-------CCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCeEEEEecCCCeeEEEECCCC-CEEEEEE
Q psy6127 298 KYVRYFPGH-------VRKVSSLNLSPVDDSFISGSY--DKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEG-LAFAIGV 367 (515)
Q Consensus 298 ~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~ 367 (515)
+.+..+.-. ......+.|+|||++++.+.. ++.|.+.|+.+++.+..+...+. ....|++ ..+++.+
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNC 236 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEc
Confidence 988776421 133567899999999998874 57899999999999988876542 2233332 4556666
Q ss_pred CCCcEEEEEeecCCCCCceeeecCCCCCcC-eEEEEEcCCCCEEEEEECCCcEEEEECCCCcee--EEeeccc-------
Q psy6127 368 NSDSIKLYDVRSYDKGPFASFKCPGERGCE-WTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCV--QSLSGVL------- 437 (515)
Q Consensus 368 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~------- 437 (515)
.||.+.+.+...++.. ............+ ...+.+++++..++..+..+.+.+.|....... ..+....
T Consensus 237 ~dG~~~~V~~~~~~v~-~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 237 RDGSLARVDFADGETK-VTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp TTSSEEEEECCTTCCE-EEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred CCCCEEEEECCCCcEE-EEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 7777777777332211 0000000111111 124678999988887788899999998655421 1111000
Q ss_pred cCCCCCEEEEEecCCCEEEEEeC----------CCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCC-EEEEee---C
Q psy6127 438 NNNASPLEATFTPDSQFVASGST----------DGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYH-MLASAC---S 503 (515)
Q Consensus 438 ~~~~~i~~~~~sp~g~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~las~~---~ 503 (515)
........++++|+++.+++... ++.|.++|..+++.+.++.. ....++++|+||++ +++++. +
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v--g~~P~gia~spDg~~~lyv~n~~s~ 393 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL--GHEIDSINVSQDAEPLLYALSAGTQ 393 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTT
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC--CCCcCeEEEccCCCEEEEEEcCCCC
Confidence 00111234789999988777642 35799999999999999975 23588999999998 777765 3
Q ss_pred CEEEEcCCCC
Q psy6127 504 NMAFWIPTLS 513 (515)
Q Consensus 504 dv~iW~~~~~ 513 (515)
++.++|....
T Consensus 394 ~VsVID~~t~ 403 (426)
T 3c75_H 394 TLHIYDAATG 403 (426)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 4999997653
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.56 E-value=6.7e-12 Score=119.47 Aligned_cols=234 Identities=12% Similarity=0.065 Sum_probs=158.3
Q ss_pred cccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC
Q psy6127 218 RENTDKINSLDYSSDG-SLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD 296 (515)
Q Consensus 218 ~~h~~~I~~l~~spd~-~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~ 296 (515)
..+..---+..|+|++ .++++...++.|..||..+++. ..+. ....+.+++++++++ ++++. ++.|.+||.++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~-l~v~~---~~~l~~~d~~~ 82 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGG-YVATI---GTKFCALNWKE 82 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSS-EEEEE---TTEEEEEETTT
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCC-EEEEE---CCeEEEEECCC
Confidence 3444556688899954 5566666789999999987765 3333 346799999999998 44443 67899999988
Q ss_pred CeeeEEecC----CCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCC-CCeEEEEecCCCeeEEEECCCCCE
Q psy6127 297 NKYVRYFPG----HVRKVSSLNLSPVDDSFISGSYD---------KTVRVWDLRQ-PNNVGMIQLSGNKPIAAYDPEGLA 362 (515)
Q Consensus 297 ~~~~~~~~~----h~~~v~~l~~~~~~~~l~s~s~d---------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~s~~~~~ 362 (515)
++....... ....+..++++|+|+++++...+ ..-.+|.+.. ++.............++|+|+++.
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence 875433221 22458899999999966654321 2345555543 333333333344678999999987
Q ss_pred EEEE-ECCCcEEEEEee--cCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccC
Q psy6127 363 FAIG-VNSDSIKLYDVR--SYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNN 439 (515)
Q Consensus 363 l~~g-~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 439 (515)
++.+ +.++.|..|++. ++.......+............++++++|++.++...++.|..||..+++.+..+....
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~-- 240 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV-- 240 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS--
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC--
Confidence 7554 457889999984 22211011122222223456789999999887777788899999999899888877543
Q ss_pred CCCCEEEEEe-cCCCEEEEEeC
Q psy6127 440 NASPLEATFT-PDSQFVASGST 460 (515)
Q Consensus 440 ~~~i~~~~~s-p~g~~l~sgs~ 460 (515)
..+++++|. |+++.|+.++.
T Consensus 241 -~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 241 -DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -SBEEEEEEESGGGCEEEEEEB
T ss_pred -CCceEEEEeCCCCCEEEEEcC
Confidence 238999998 88887766654
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.56 E-value=9.7e-12 Score=118.39 Aligned_cols=231 Identities=13% Similarity=0.112 Sum_probs=158.8
Q ss_pred CCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q psy6127 261 SKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPN 340 (515)
Q Consensus 261 ~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 340 (515)
....-..+..|++++..++.+. ..++.|..||..+++.. .+. ....+.+++++|+|+++++ . ++.|.+||.++++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d-~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVD-IPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEE-TTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred cCCccccCCeEECCCCEEEEEE-CCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 3344566889999888777765 46899999999887653 332 4567999999999995554 3 5789999998876
Q ss_pred eEEEEecC-----CCeeEEEECCCCCEEEEEECC---------CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCC
Q psy6127 341 NVGMIQLS-----GNKPIAAYDPEGLAFAIGVNS---------DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPD 406 (515)
Q Consensus 341 ~~~~~~~~-----~~~~~~~~s~~~~~l~~g~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~ 406 (515)
........ ..+..++++|+|+++++.... ..-.+|.+..... ..... ........++|+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~---~~~~~pngi~~spd 159 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH--VKKYF---DQVDISNGLDWSLD 159 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC--EEEEE---EEESBEEEEEECTT
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC--EEEEe---eccccccceEEcCC
Confidence 54433321 235679999999977654322 3346666654211 11111 11224568999999
Q ss_pred CCEEEEE-ECCCcEEEEEC--CCCcee--EEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCC
Q psy6127 407 GKLILVS-TNGSIIRLFDA--FNGNCV--QSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGD 481 (515)
Q Consensus 407 ~~~l~~~-s~dg~i~iwd~--~~~~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 481 (515)
++.++.+ +.++.|.+|++ .++... +.+.........+..++++++|++.++...++.|..||..+|+.+..+..
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~- 238 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL- 238 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC-
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC-
Confidence 9977655 45788999987 455432 22222111223368899999998888877788999999999999988876
Q ss_pred CCCCeEEEEEC-CCCCEEEEee
Q psy6127 482 HPSAVQSLQFN-PKYHMLASAC 502 (515)
Q Consensus 482 h~~~V~~l~~s-p~~~~las~~ 502 (515)
+...+++++|. |+++.|..++
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCceEEEEeCCCCCEEEEEc
Confidence 66789999998 7877655443
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.55 E-value=1.9e-12 Score=129.03 Aligned_cols=242 Identities=10% Similarity=0.093 Sum_probs=166.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeee
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYV 300 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~ 300 (515)
-.....++|+|+++++++...++.|++||..++........... .. ++|+++++.++++.......|.+++..++...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 34688999999999888777789999999988777655554333 33 99999999877765211228999998766544
Q ss_pred EEe----cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEE----EecCCCe--e-EEEECCC-CCEEEEEEC
Q psy6127 301 RYF----PGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGM----IQLSGNK--P-IAAYDPE-GLAFAIGVN 368 (515)
Q Consensus 301 ~~~----~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~--~-~~~~s~~-~~~l~~g~~ 368 (515)
..+ ......+.+++++|++..|+.+..++.|+.||..++..... ....... . .++|+|+ +.++++-..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 333 22456788999999666666677789999999988764332 1111111 2 8999995 555555566
Q ss_pred CCcEEEEEeecCCCCCceeeecCC------------CCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeec
Q psy6127 369 SDSIKLYDVRSYDKGPFASFKCPG------------ERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSG 435 (515)
Q Consensus 369 dg~i~i~d~~~~~~~~~~~~~~~~------------~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~ 435 (515)
++.|+.|+.... ...+.... ..-.....++++|+|+++++-+ .++.|+.|+..++.. ..+.+
T Consensus 288 ~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g 362 (409)
T 3hrp_A 288 LSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAG 362 (409)
T ss_dssp TTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEE
T ss_pred CCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeC
Confidence 788999886532 11111110 0123467999999999777766 788999999877764 33433
Q ss_pred ccc------------CCCCCEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy6127 436 VLN------------NNASPLEATFTPDSQFVASGSTDGQVHIWNA 469 (515)
Q Consensus 436 ~~~------------~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~ 469 (515)
... .-..+..++++|+|.++++-..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 210 0124789999999888887778888888765
No 210
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.53 E-value=1.2e-12 Score=127.55 Aligned_cols=257 Identities=11% Similarity=0.022 Sum_probs=169.5
Q ss_pred CcEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeeEec-------CCCCceeEEEEecCCCeEEEEEeeC----CCe
Q psy6127 222 DKINSLDYSSDGSLLISCS--DDDQIIIYDCEQGTSKNTIN-------SKKYGVDLIKFTHSKTTAIHASTKV----DAT 288 (515)
Q Consensus 222 ~~I~~l~~spd~~~lasgs--~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~~~----d~~ 288 (515)
..+..++++|+|+++++.. .++.++||.+.+++.. .+. .+-..+..+++.+++. ++++.... ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCCe
Confidence 6889999999999988864 2343566655455432 221 2346789999999975 44443221 578
Q ss_pred EEEEECCCCeeeEEecC------CCCCeEEEEEcCCCCEE-EEEe---CCCcEEEEEcCCCCeEEEEecCCCe--eEEEE
Q psy6127 289 LRYLSLHDNKYVRYFPG------HVRKVSSLNLSPVDDSF-ISGS---YDKTVRVWDLRQPNNVGMIQLSGNK--PIAAY 356 (515)
Q Consensus 289 v~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~l-~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~ 356 (515)
|.+||+.+++.+..+.. +...+..++++|++..+ ++-. .++.|.+||+.+++....+..+... ....+
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 99999999987766542 22456899999875554 4444 5789999999988876655321111 01334
Q ss_pred CCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCC-cEEEEECC---CCc----
Q psy6127 357 DPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS-IIRLFDAF---NGN---- 428 (515)
Q Consensus 357 s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg-~i~iwd~~---~~~---- 428 (515)
.++|..+.+.+.++.++.|. ..+..++|+|+|+.|+++..++ .+..++.. .+.
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~-------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH-------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp EETTEECBEECTTSCEECCC-------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred eECCEEEEeccCCCceecee-------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence 45666666666666664432 1346899999999998887765 44444421 111
Q ss_pred -eeE--EeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee
Q psy6127 429 -CVQ--SLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC 502 (515)
Q Consensus 429 -~~~--~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~ 502 (515)
... ...+.. ..+..++++++|.++++...++.|.+||..+++........+...+++++|.+++.++++.+
T Consensus 236 ~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 236 ELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp HHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred hhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 000 111111 13567999999999998888999999998667654444322345689999999998887765
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=3.2e-12 Score=122.38 Aligned_cols=241 Identities=10% Similarity=0.052 Sum_probs=159.3
Q ss_pred CCCceeEEEEecCCCeEEEE-----EeeCCCeEEEEECCCCeeeEEec----CCCCCeEEEEEcCC-CCEEEEEeCCCcE
Q psy6127 262 KKYGVDLIKFTHSKTTAIHA-----STKVDATLRYLSLHDNKYVRYFP----GHVRKVSSLNLSPV-DDSFISGSYDKTV 331 (515)
Q Consensus 262 ~~~~v~~~~~~~~~~~l~~~-----s~~~d~~v~vwd~~~~~~~~~~~----~h~~~v~~l~~~~~-~~~l~s~s~dg~i 331 (515)
.-....+++|.+++...+.. .+..++.|.+||..+++...... ++...+.+++++++ +++++ ++.++.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCE
Confidence 33456889999888644440 02258899999988877643322 25567999999999 65444 4445579
Q ss_pred EEEEcCCCCeEEE-Eec-----CCCeeEEEECCCCCEEEEEECC---------------CcEEEEEeecCCCCCceeeec
Q psy6127 332 RVWDLRQPNNVGM-IQL-----SGNKPIAAYDPEGLAFAIGVNS---------------DSIKLYDVRSYDKGPFASFKC 390 (515)
Q Consensus 332 ~iwd~~~~~~~~~-~~~-----~~~~~~~~~s~~~~~l~~g~~d---------------g~i~i~d~~~~~~~~~~~~~~ 390 (515)
.+||.. ++.... ... ...+..++++++|+++++...+ +.|..||.. ++ .....
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~- 168 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ---MIQVD- 168 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC---EEEEE-
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC---EEEec-
Confidence 999998 665433 211 1236789999999888776554 455555543 11 11111
Q ss_pred CCCCCcCeEEEEEc----CCCCEEEEEE-CCCcEEEEECC-CCcee--EEeeccccCC-CCCEEEEEecCCCEEEEEeCC
Q psy6127 391 PGERGCEWTGLKFS----PDGKLILVST-NGSIIRLFDAF-NGNCV--QSLSGVLNNN-ASPLEATFTPDSQFVASGSTD 461 (515)
Q Consensus 391 ~~~~~~~i~~l~~s----p~~~~l~~~s-~dg~i~iwd~~-~~~~~--~~~~~~~~~~-~~i~~~~~sp~g~~l~sgs~d 461 (515)
........++|+ |+++.++++. .++.|.+||.. +++.. ..+....... ..+..++++++|+++++...+
T Consensus 169 --~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 169 --TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp --EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred --cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 112245689999 9997766654 67899999976 44421 1222111111 336889999999988887788
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEE-EeeC--CEEEEcCCC
Q psy6127 462 GQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLA-SACS--NMAFWIPTL 512 (515)
Q Consensus 462 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~la-s~~~--dv~iW~~~~ 512 (515)
+.|.+||..+++.+..+.. +...+.+++|+|+++.|. +... .+..|+++.
T Consensus 247 ~~i~~~d~~~g~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TEEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCCcEeEEEeC-CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8999999987776666655 557899999999999554 4444 477777654
No 212
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.52 E-value=2.3e-13 Score=132.43 Aligned_cols=273 Identities=13% Similarity=-0.023 Sum_probs=182.7
Q ss_pred EEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeeEecCC-------
Q psy6127 200 ITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCS----------DDDQIIIYDCEQGTSKNTINSK------- 262 (515)
Q Consensus 200 ~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs----------~dg~i~iwd~~~~~~~~~~~~~------- 262 (515)
.+.+.| ..+++.+.++.....+ .+.++||+++++++. .++.|.+||..+++.+.++..+
T Consensus 47 ~vsvID--~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSC--AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEE--TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEE--CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 455666 6667777777655566 799999999999886 3689999999999999998643
Q ss_pred CCceeEEEEecCCCeEEEEEeeCCCeEEE--EECCCCeeeEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC-
Q psy6127 263 KYGVDLIKFTHSKTTAIHASTKVDATLRY--LSLHDNKYVRYFPGHVRKVSSLNLSPVDD-SFISGSYDKTVRVWDLRQ- 338 (515)
Q Consensus 263 ~~~v~~~~~~~~~~~l~~~s~~~d~~v~v--wd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~- 338 (515)
......++++|||++++++....+..+.+ +|..+ +..+.-. +. ..+.|+++ .+++.+.|+.+.+.|+.+
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~ 195 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccc
Confidence 13467899999999999886333567888 99877 3333211 11 12334443 556667788888888876
Q ss_pred ----CCeEE----EEecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCC-------CCCcCeEEEEE
Q psy6127 339 ----PNNVG----MIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPG-------ERGCEWTGLKF 403 (515)
Q Consensus 339 ----~~~~~----~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~i~~l~~ 403 (515)
++... .+.... .+. . .+++..++..+. +.+.+.|...........+.... ........+++
T Consensus 196 ~~~~~~v~~~~t~~i~vg~-~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~ 271 (368)
T 1mda_H 196 PAAAGIVGAQCTGAQNCSS-QAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp CCCCEECCCCSCTTSCBCS-CCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred cccCCeEEEEeeeeeeCCC-Ccc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence 33221 111111 122 3 666666666666 99999998653211111111100 00011112789
Q ss_pred cCCCCEEEEEEC---------CCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCC-EEEEEe-CCCcEEEEECCCC
Q psy6127 404 SPDGKLILVSTN---------GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQ-FVASGS-TDGQVHIWNAERG 472 (515)
Q Consensus 404 sp~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~sgs-~dg~I~iwd~~~~ 472 (515)
+|++++++++.. ++.+.++|+.+++.+..+..... ...++|+|||+ .+++.. .++.|.++|+.++
T Consensus 272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~----p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE----ECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC----cceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 999998887643 23567999999999888875442 68999999998 455555 5899999999999
Q ss_pred eEEEEEcCCCCCCeEEEEECC
Q psy6127 473 YKVCVLDGDHPSAVQSLQFNP 493 (515)
Q Consensus 473 ~~~~~~~~~h~~~V~~l~~sp 493 (515)
+.+.++.. . ...+.+++.+
T Consensus 348 kvv~~I~v-g-~~P~~i~~~~ 366 (368)
T 1mda_H 348 QDQSSVEL-D-KGPESLSVQN 366 (368)
T ss_dssp EEEEECCC-C-SCCCEEECCC
T ss_pred cEEEEEEC-C-CCCCEEEeec
Confidence 99999975 3 3455666655
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.49 E-value=2.1e-11 Score=121.46 Aligned_cols=238 Identities=15% Similarity=0.085 Sum_probs=159.6
Q ss_pred CceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCe
Q psy6127 264 YGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDK--TVRVWDLRQPNN 341 (515)
Q Consensus 264 ~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~ 341 (515)
.....++|++++. ++++. ..++.|++||..++........... .. ++|+|+++.|+++..++ .|.++|...+..
T Consensus 131 ~~P~~la~d~~g~-lyv~d-~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQ-RDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTE-EEEEE-TTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCC-EEEEe-cCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 4578899999886 44444 4578999999998877655544333 33 99999999999888866 799999887665
Q ss_pred EEEE----e-cCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcC-eEEEEEcCCCCEE-EEEE
Q psy6127 342 VGMI----Q-LSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCE-WTGLKFSPDGKLI-LVST 414 (515)
Q Consensus 342 ~~~~----~-~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-i~~l~~sp~~~~l-~~~s 414 (515)
...+ . ....+..++++|++..|+++..++.|+.||..................... ...++|+|++..| ++-.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 2 334477899999655566677788999999876431111000011111111 2389999964444 4545
Q ss_pred CCCcEEEEECCCCceeEEeeccc------------cCCCCCEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEEcCC
Q psy6127 415 NGSIIRLFDAFNGNCVQSLSGVL------------NNNASPLEATFTPDSQFVASGS-TDGQVHIWNAERGYKVCVLDGD 481 (515)
Q Consensus 415 ~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~i~~~~~sp~g~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~ 481 (515)
.++.|+.|+.... ...+.+.. ..-..+..++++|+|+++++-+ .++.|+.|++.+++... +.+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~g- 362 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VAG- 362 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EEE-
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-EeC-
Confidence 6788999986543 33333321 0012378999999999777777 78999999988887543 322
Q ss_pred C---------------CCCeEEEEECCCCCEEEEeeCCEEEEc
Q psy6127 482 H---------------PSAVQSLQFNPKYHMLASACSNMAFWI 509 (515)
Q Consensus 482 h---------------~~~V~~l~~sp~~~~las~~~dv~iW~ 509 (515)
+ -.....++++|++.++++-.++-+|+.
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence 2 245889999999888777766645443
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.48 E-value=1.8e-10 Score=111.07 Aligned_cols=227 Identities=9% Similarity=0.014 Sum_probs=151.1
Q ss_pred cEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeE
Q psy6127 223 KINSLDYSSDG-SLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVR 301 (515)
Q Consensus 223 ~I~~l~~spd~-~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~ 301 (515)
...+..|+|++ .++++...++.|..||..+++.. .+. ....+.+++|.+++..++ ++ +..|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v-~~---~~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLI-AS---DDGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEE-EE---TTEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEE-EE---CCCEEEEECCCCcEEE
Confidence 34677899975 45566667899999999877643 233 245799999999986544 33 4459999998887543
Q ss_pred EecC----CCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEE-CCC
Q psy6127 302 YFPG----HVRKVSSLNLSPVDDSFISGSY------DKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGV-NSD 370 (515)
Q Consensus 302 ~~~~----h~~~v~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg 370 (515)
.... ....+.+++++|+|+++++... .+.|..+| +++.............++|+|+++.++.+. .++
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 3221 1246899999999997665442 24555555 454433333333467899999998776554 568
Q ss_pred cEEEEEee--cC-CCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEE
Q psy6127 371 SIKLYDVR--SY-DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEAT 447 (515)
Q Consensus 371 ~i~i~d~~--~~-~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~ 447 (515)
.|.+||+. ++ .......+...........+++++++|++.++...++.|..||. +++.+..+.... ..+.+++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~---~~~~~~a 277 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG---KQTTCPA 277 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC---SBEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC---CCcEEEE
Confidence 99999986 33 21111122222223345678999999987777767788999998 677666665432 2389999
Q ss_pred Ee-cCCCEEEEEeCC
Q psy6127 448 FT-PDSQFVASGSTD 461 (515)
Q Consensus 448 ~s-p~g~~l~sgs~d 461 (515)
|+ |+++.|++++..
T Consensus 278 f~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 278 FIGPDASRLLVTSAR 292 (326)
T ss_dssp EESTTSCEEEEEEBC
T ss_pred EecCCCCEEEEEecC
Confidence 98 888877665543
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.48 E-value=1.6e-11 Score=117.30 Aligned_cols=231 Identities=11% Similarity=0.051 Sum_probs=156.6
Q ss_pred ccccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC
Q psy6127 217 FRENTDKINSLDYSSDGS-LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH 295 (515)
Q Consensus 217 ~~~h~~~I~~l~~spd~~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~ 295 (515)
+..+........|+|+|+ +++++..++.|..|+. +++ ...+..+...+..+++.++++ ++++. ..++.|.+|+.+
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~-~~~~~v~~~~~~ 115 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR-LVHCE-HGRRAITRSDAD 115 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC-EEEEE-TTTTEEEEECTT
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC-EEEEE-CCCCEEEEECCC
Confidence 344556678899999998 5667777899999998 454 344555667789999999997 44443 346789999986
Q ss_pred CCeeeEEec---CC-CCCeEEEEEcCCCCEEEE----EeC-------------CCcEEEEEcCCCCeEEEEecCCCeeEE
Q psy6127 296 DNKYVRYFP---GH-VRKVSSLNLSPVDDSFIS----GSY-------------DKTVRVWDLRQPNNVGMIQLSGNKPIA 354 (515)
Q Consensus 296 ~~~~~~~~~---~h-~~~v~~l~~~~~~~~l~s----~s~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 354 (515)
++...... +. ...+.++++.|+|+..++ |.. .+.|..||..+++..... .......+
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl 193 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL 193 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce
Confidence 54332221 11 134678999999998776 332 256778887777655444 33446789
Q ss_pred EECCCCCEEEEEECC------CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q psy6127 355 AYDPEGLAFAIGVNS------DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGN 428 (515)
Q Consensus 355 ~~s~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~ 428 (515)
+|+|+++.++++... +.|..|++..........+. .........++++++|++. +++.+ .|.+|+. +++
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~--~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~-~g~ 268 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA--SVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS-DGQ 268 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE--CCSSSCCCSEEECTTSCEE-ECCSS-EEEEECT-TSC
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE--ECCCCCCCeEEECCCCCEE-EecCC-cEEEECC-CCC
Confidence 999999988877665 78999998753200001111 1122334578999999844 44444 4999997 577
Q ss_pred eeEEeeccccCCCCCEEEEEecCCCEEEEEeCCC
Q psy6127 429 CVQSLSGVLNNNASPLEATFTPDSQFVASGSTDG 462 (515)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg 462 (515)
.+..+.... .+.+++|+|+++.|+.++.++
T Consensus 269 ~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 269 LLGHIPTPG----TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEEEEECSS----CCCEEEECTTSCEEEEEETTE
T ss_pred EEEEEECCC----ceeEEEEeCCCCEEEEEcCCe
Confidence 776666432 278999999999888887765
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.47 E-value=3.9e-11 Score=114.59 Aligned_cols=233 Identities=12% Similarity=0.047 Sum_probs=155.5
Q ss_pred eeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy6127 255 SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVW 334 (515)
Q Consensus 255 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 334 (515)
.+..+...........|+|+++.++... ..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d-~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSD-LVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEE-TTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEE-CCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 3444444556678899999999777665 46899999998 444 34455566779999999999977666666889999
Q ss_pred EcCCCCeEEEEec-----CCCeeEEEECCCCCEEEE----EEC-------------CCcEEEEEeecCCCCCceeeecCC
Q psy6127 335 DLRQPNNVGMIQL-----SGNKPIAAYDPEGLAFAI----GVN-------------SDSIKLYDVRSYDKGPFASFKCPG 392 (515)
Q Consensus 335 d~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~----g~~-------------dg~i~i~d~~~~~~~~~~~~~~~~ 392 (515)
|.. ++....... ...+..++++|+|++.++ |.. .+.|..||..+++.. ...
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~---~~~--- 185 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ---RMA--- 185 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE---EEE---
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE---EEe---
Confidence 986 554332211 123567999999998886 321 245666665443321 111
Q ss_pred CCCcCeEEEEEcCCCCEEEEEECC------CcEEEEECCCCceeEEeecc-ccCCCCCEEEEEecCCCEEEEEeCCCcEE
Q psy6127 393 ERGCEWTGLKFSPDGKLILVSTNG------SIIRLFDAFNGNCVQSLSGV-LNNNASPLEATFTPDSQFVASGSTDGQVH 465 (515)
Q Consensus 393 ~~~~~i~~l~~sp~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~sgs~dg~I~ 465 (515)
.......++|+|+++.|+++... +.|++|++..+. +...... ......+..++++++|++.+ ++.+| |.
T Consensus 186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~g-v~ 261 (305)
T 3dr2_A 186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTG-VC 261 (305)
T ss_dssp -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSE-EE
T ss_pred -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCc-EE
Confidence 12345689999999988887765 689999987654 2111110 01122356789999999544 44454 99
Q ss_pred EEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC
Q psy6127 466 IWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN 504 (515)
Q Consensus 466 iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d 504 (515)
+|+. +++.+..+.. +. .+.+++|+|+++.|..++.+
T Consensus 262 ~~~~-~g~~~~~~~~-~~-~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 262 VFDS-DGQLLGHIPT-PG-TASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp EECT-TSCEEEEEEC-SS-CCCEEEECTTSCEEEEEETT
T ss_pred EECC-CCCEEEEEEC-CC-ceeEEEEeCCCCEEEEEcCC
Confidence 9998 5777777765 33 58899999998877766544
No 217
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.47 E-value=5.7e-10 Score=105.59 Aligned_cols=257 Identities=9% Similarity=0.020 Sum_probs=169.8
Q ss_pred CCcEEEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee-EecCCCCceeEEEEecCC
Q psy6127 197 SRTITKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKN-TINSKKYGVDLIKFTHSK 275 (515)
Q Consensus 197 ~~~~i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~ 275 (515)
.+..+..++.. ..... ..+..+...+.+++++++|++.++...++.|..||.. ++... ........+..+++.+++
T Consensus 39 ~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g 115 (300)
T 2qc5_A 39 KANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG 115 (300)
T ss_dssp TTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT
T ss_pred CCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC
Confidence 34455566533 12221 1233445789999999999888777668899999987 55432 223334678899999888
Q ss_pred CeEEEEEeeCCCeEEEEECCCCeeeE-EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe--cCCCee
Q psy6127 276 TTAIHASTKVDATLRYLSLHDNKYVR-YFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ--LSGNKP 352 (515)
Q Consensus 276 ~~l~~~s~~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~ 352 (515)
... ++. ..++.|..+|.. ++... .+......+..+++.++++..++...++.|..+|. +++...... ....+.
T Consensus 116 ~l~-v~~-~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 191 (300)
T 2qc5_A 116 DIW-FTQ-LNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPV 191 (300)
T ss_dssp CEE-EEE-TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CEE-EEc-cCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcc
Confidence 643 333 347899999987 55443 23334567899999999997666666788999998 555443221 123477
Q ss_pred EEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEE
Q psy6127 353 IAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQS 432 (515)
Q Consensus 353 ~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~ 432 (515)
.++++++|+..++....+.|..||. .+. ...... ......+.+++++++|+..++...++.|..||. +++.. .
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~---~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~ 264 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITT-TGE---ISEYDI-PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-E 264 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCC---EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-E
T ss_pred eEEECCCCCEEEEccCCCEEEEEcC-CCc---EEEEEC-CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-E
Confidence 8999999987777666778999987 322 112212 223456789999999986666556789999998 45433 3
Q ss_pred eeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 433 LSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 433 ~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
+... .....+.+++++++|++.++.. . .|..+|.+
T Consensus 265 ~~~~-~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 265 YQLQ-TENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EECC-STTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EECC-ccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 3221 1223478899999998666554 4 67777653
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.46 E-value=2.7e-10 Score=109.86 Aligned_cols=223 Identities=12% Similarity=0.050 Sum_probs=150.4
Q ss_pred eeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE
Q psy6127 266 VDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI 345 (515)
Q Consensus 266 v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 345 (515)
.....|+|++..++.+. ..++.|..||..+++... +. ....+.+++++|+|+++++. . ..|.+||..+++.....
T Consensus 51 ~egp~~~~~~~~l~~~d-~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFN-ILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEE-GGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEE-CCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence 45678999887777665 458899999998876543 32 34679999999999877654 4 44999999888765443
Q ss_pred ecC-----CCeeEEEECCCCCEEEEEECC----CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-C
Q psy6127 346 QLS-----GNKPIAAYDPEGLAFAIGVNS----DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST-N 415 (515)
Q Consensus 346 ~~~-----~~~~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~ 415 (515)
... ..+..++++|+|+++++...+ +...+|.+..++ ...+. ........++|+|+++.++.+. .
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~---~~~~~---~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK---VTKLF---ADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE---EEEEE---EEESSEEEEEECTTSCEEEEEETT
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc---EEEee---CCCcccCCeEEcCCCCEEEEEECC
Confidence 221 236789999999977655422 234455444221 11111 1122456899999999776654 5
Q ss_pred CCcEEEEECC--CC-cee--EEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEE
Q psy6127 416 GSIIRLFDAF--NG-NCV--QSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQ 490 (515)
Q Consensus 416 dg~i~iwd~~--~~-~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 490 (515)
++.|.+||+. ++ ... ..+.........+..++++++|.+.++...++.|.+||. +++.+..+.. +...+++++
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~-~~~~~~~~a 277 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPA 277 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC-CCCCcEEEE
Confidence 6889999986 55 321 122211112233678999999988777767788999998 6777777765 566799999
Q ss_pred EC-CCCCEEEEe
Q psy6127 491 FN-PKYHMLASA 501 (515)
Q Consensus 491 ~s-p~~~~las~ 501 (515)
|+ |++..|..+
T Consensus 278 f~g~d~~~L~vt 289 (326)
T 2ghs_A 278 FIGPDASRLLVT 289 (326)
T ss_dssp EESTTSCEEEEE
T ss_pred EecCCCCEEEEE
Confidence 98 887765444
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.46 E-value=4.7e-12 Score=135.25 Aligned_cols=247 Identities=13% Similarity=0.070 Sum_probs=158.9
Q ss_pred cccCCcEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeC-------
Q psy6127 218 RENTDKINSLDYSSDGSLLISCS-----DDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKV------- 285 (515)
Q Consensus 218 ~~h~~~I~~l~~spd~~~lasgs-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~------- 285 (515)
.+|...+..++|||||++||.+. .+.+|++||+.+++.+... .+......++|+ |++.+++++...
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 35677899999999999998543 3357999999999865431 111113567899 999998887321
Q ss_pred ----CCeEEEEECCCCee----eEEecC-CCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEcCCCC-eEEEE-ecCCC
Q psy6127 286 ----DATLRYLSLHDNKY----VRYFPG-HVRKVSSLNLSPVDDSFISGSY----DKTVRVWDLRQPN-NVGMI-QLSGN 350 (515)
Q Consensus 286 ----d~~v~vwd~~~~~~----~~~~~~-h~~~v~~l~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~-~~~~~ 350 (515)
...|++|++.++.. +..... |...+..+.|+|||++|+.... ++.|.++|+.++. ....+ .....
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 13599999987642 333333 4556789999999997754432 3589999998763 23333 33332
Q ss_pred eeEEEECCCCCEEEEEECC----CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCC---cEEEEE
Q psy6127 351 KPIAAYDPEGLAFAIGVNS----DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS---IIRLFD 423 (515)
Q Consensus 351 ~~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg---~i~iwd 423 (515)
.... ++++|..|+..+.. +.|..+|+.+........+. .+...+. .|+|++++|+....++ .|++|+
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 3333 67777777665542 57888888765421122222 2222333 8899999888776543 688999
Q ss_pred CCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC----CcEEEEECCCCeEE
Q psy6127 424 AFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD----GQVHIWNAERGYKV 475 (515)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d----g~I~iwd~~~~~~~ 475 (515)
+..+ ....+... ....+..+.++|+++.++....+ +.++.||+.+++..
T Consensus 357 ~~g~-~~~~l~~p--~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 357 YEGK-RVREVALP--GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp TTSC-EEEEECCS--SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred CCCC-eeEEeecC--CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8744 34444321 22235667778888766655444 78999999887643
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.44 E-value=2.7e-12 Score=125.23 Aligned_cols=173 Identities=12% Similarity=0.032 Sum_probs=133.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC-----------eEEEEecCCCeeEEEECCCCCEEEEEECCCcEEEEEe
Q psy6127 309 KVSSLNLSPVDDSFISGSYDKTVRVWDLRQPN-----------NVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDV 377 (515)
Q Consensus 309 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~ 377 (515)
+++.+++++...++++|+.++ +++|++.... ......... +..++| ++++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999875 5569865332 223445666 999999 99999999 8899999999
Q ss_pred ecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEE
Q psy6127 378 RSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVAS 457 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s 457 (515)
++..... .. ..+...+..+.+.+. .+++++.||.+.+||+.++..... . ..|.+++|||+| ++.
T Consensus 114 ~sl~~~~--~~---~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~----~---~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 114 EELSEFR--TV---TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL----A---QNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp SSTTCEE--EE---EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE----E---ESEEEEEECSSE--EEE
T ss_pred hhhhccC--cc---ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccc----c---CCceEEEEcCCc--eEE
Confidence 8765211 11 123445777777655 388899999999999998876531 1 138999999999 678
Q ss_pred EeCCCcEEEEECCCCeE--EEEEcC--------CCCCCeEEEEECCCCCEEEEee
Q psy6127 458 GSTDGQVHIWNAERGYK--VCVLDG--------DHPSAVQSLQFNPKYHMLASAC 502 (515)
Q Consensus 458 gs~dg~I~iwd~~~~~~--~~~~~~--------~h~~~V~~l~~sp~~~~las~~ 502 (515)
|..||++++|+...++. ..++.. .|...|.++.|.+++.++++-.
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 89999999999988775 566621 2678899999999999988743
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.41 E-value=2.8e-12 Score=125.14 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=134.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----------eeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEE
Q psy6127 223 KINSLDYSSDGSLLISCSDDDQIIIYDCEQGT-----------SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRY 291 (515)
Q Consensus 223 ~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~v 291 (515)
+++.+++++...++++|+.++ +++|++++.. ..... .+.. |+.++| ++..++++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~---~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS---TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE---ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE---cCCcEEE
Confidence 689999999999999999985 6679865432 11222 2445 999999 88877776 4899999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEECCCc
Q psy6127 292 LSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDS 371 (515)
Q Consensus 292 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 371 (515)
||+.+.........|...+.++.+.+. .+++++.||.+.+||+.++.... ....+.+++|+|+| ++.|..||+
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 999877666666677888988887754 38889999999999999887654 33469999999999 778999999
Q ss_pred EEEEEeecCCCCCceeeec------CCCCCcCeEEEEEcCCCCEEEEE
Q psy6127 372 IKLYDVRSYDKGPFASFKC------PGERGCEWTGLKFSPDGKLILVS 413 (515)
Q Consensus 372 i~i~d~~~~~~~~~~~~~~------~~~~~~~i~~l~~sp~~~~l~~~ 413 (515)
+++|+...........+.. ...+...|.++.|.+++.++++=
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999887644110112211 11356889999999999988863
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.40 E-value=2.9e-11 Score=128.47 Aligned_cols=267 Identities=12% Similarity=0.107 Sum_probs=176.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEecCC--CCceeEEEEec--CCCeEEEEEee----CCCeEEEEECCCCeeeEEe
Q psy6127 232 DGSLLISCSDDDQIIIYDCEQGTSKNTINSK--KYGVDLIKFTH--SKTTAIHASTK----VDATLRYLSLHDNKYVRYF 303 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~~~s~~----~d~~v~vwd~~~~~~~~~~ 303 (515)
++..++.++.|+.+..+|.++|+.+..+... ......+..+| .+..+++.+++ .++.|+.||.++|+.+..+
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 3567888999999999999999998777543 11111111111 13344444322 3689999999999988766
Q ss_pred cCC--C-----------------------------CCeEEEEEcCCCCEEEEEeCCCc-------------------EEE
Q psy6127 304 PGH--V-----------------------------RKVSSLNLSPVDDSFISGSYDKT-------------------VRV 333 (515)
Q Consensus 304 ~~h--~-----------------------------~~v~~l~~~~~~~~l~s~s~dg~-------------------i~i 333 (515)
... . .....+++.|++..++.++.++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 421 0 01125788898899999887764 999
Q ss_pred EEcCCCCeEEEEecCC----------CeeEEEECCCCC---EEEEEECCCcEEEEEeecCCCCCceee------------
Q psy6127 334 WDLRQPNNVGMIQLSG----------NKPIAAYDPEGL---AFAIGVNSDSIKLYDVRSYDKGPFASF------------ 388 (515)
Q Consensus 334 wd~~~~~~~~~~~~~~----------~~~~~~~s~~~~---~l~~g~~dg~i~i~d~~~~~~~~~~~~------------ 388 (515)
+|.++|+.+..++... .........+|+ .++.++.+|.++++|.++++......+
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 9999999988775421 111122223554 688889999999999888653100000
Q ss_pred ---------------------ecCCC-CCcCeEEEEEcCCCCEEEEEEC-------------------------------
Q psy6127 389 ---------------------KCPGE-RGCEWTGLKFSPDGKLILVSTN------------------------------- 415 (515)
Q Consensus 389 ---------------------~~~~~-~~~~i~~l~~sp~~~~l~~~s~------------------------------- 415 (515)
.++.. ....+..++++|+...+++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 439 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM 439 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence 00000 0112334789998888877532
Q ss_pred --------------CCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCC
Q psy6127 416 --------------GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGD 481 (515)
Q Consensus 416 --------------dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 481 (515)
+|.+..||+.+|+.+.....+.. .....+...+.+++.|+.||.++.||.++|+.+.++...
T Consensus 440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI----FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC----ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 37799999999998877765432 233466678889999999999999999999999888753
Q ss_pred CCCCeEEEEECCCCC-EEEEee
Q psy6127 482 HPSAVQSLQFNPKYH-MLASAC 502 (515)
Q Consensus 482 h~~~V~~l~~sp~~~-~las~~ 502 (515)
+.....-+.|..+|+ +++..+
T Consensus 516 ~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 516 SGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp SCCCSCCEEEEETTEEEEEEEE
T ss_pred CCcccCceEEEECCEEEEEEEe
Confidence 333334466777776 444443
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.38 E-value=5.1e-11 Score=126.29 Aligned_cols=264 Identities=13% Similarity=0.096 Sum_probs=179.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEecCC-C----CceeEEEEecCCCeEEEEEee----CCCeEEEEECCCCeeeEE
Q psy6127 232 DGSLLISCSDDDQIIIYDCEQGTSKNTINSK-K----YGVDLIKFTHSKTTAIHASTK----VDATLRYLSLHDNKYVRY 302 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~s~~----~d~~v~vwd~~~~~~~~~ 302 (515)
++..++.++.|+.+..+|..+|+.+..+... . ..+...-.. .+..+++++.. .++.|+.+|..+|+.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 4568888999999999999999999888754 2 112111111 23455554422 268999999999998877
Q ss_pred ecCCCCC--------------------------------eEEEEEcCCCCEEEEEeCCC-------------------cE
Q psy6127 303 FPGHVRK--------------------------------VSSLNLSPVDDSFISGSYDK-------------------TV 331 (515)
Q Consensus 303 ~~~h~~~--------------------------------v~~l~~~~~~~~l~s~s~dg-------------------~i 331 (515)
+...... ...++++|++..++.+..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 6432211 13578889999888887664 59
Q ss_pred EEEEcCCCCeEEEEecCC----------CeeEEEECCCC---CEEEEEECCCcEEEEEeecCCCCCceeee---------
Q psy6127 332 RVWDLRQPNNVGMIQLSG----------NKPIAAYDPEG---LAFAIGVNSDSIKLYDVRSYDKGPFASFK--------- 389 (515)
Q Consensus 332 ~iwd~~~~~~~~~~~~~~----------~~~~~~~s~~~---~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--------- 389 (515)
..+|.++++.+..++... ....+....+| ..++.++.+|.++++|.++++......+.
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 999999999988875421 12223333467 67888999999999998886521100000
Q ss_pred --------------------cCCC-CCcCeEEEEEcCCCCEEEEEECC--------------------------------
Q psy6127 390 --------------------CPGE-RGCEWTGLKFSPDGKLILVSTNG-------------------------------- 416 (515)
Q Consensus 390 --------------------~~~~-~~~~i~~l~~sp~~~~l~~~s~d-------------------------------- 416 (515)
++.. .......++++|++..+++...+
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 0000 00112367899998888776431
Q ss_pred -----------CcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCC
Q psy6127 417 -----------SIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSA 485 (515)
Q Consensus 417 -----------g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 485 (515)
+.|..||+.+++.+....... ++....+..++.+++.++.||.+++||..+|+.+..+...+...
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 521 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS----PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV 521 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cccccCCCCCccEEEEEeCCCCcEEeecCCCC----CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcc
Confidence 779999999999887765322 23455677788899999999999999999999999987534333
Q ss_pred eEEEEECCCCC-EEEE
Q psy6127 486 VQSLQFNPKYH-MLAS 500 (515)
Q Consensus 486 V~~l~~sp~~~-~las 500 (515)
..-+.|.++|+ +++.
T Consensus 522 ~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 522 AAPSTYMVDGRQYVSV 537 (677)
T ss_dssp SCCEEEEETTEEEEEE
T ss_pred cCCEEEEeCCEEEEEE
Confidence 34566677776 4444
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.37 E-value=5e-10 Score=109.50 Aligned_cols=231 Identities=16% Similarity=0.096 Sum_probs=155.2
Q ss_pred EEc--CCCCEEEEEe-CCCeEEEEECCCC----eeeeEec-------CCCCceeEEEEecCCCeEEEEEeeC----CCeE
Q psy6127 228 DYS--SDGSLLISCS-DDDQIIIYDCEQG----TSKNTIN-------SKKYGVDLIKFTHSKTTAIHASTKV----DATL 289 (515)
Q Consensus 228 ~~s--pd~~~lasgs-~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~~~----d~~v 289 (515)
.++ +++++|+..+ .+++|.++|+.+. +..+++. ........+...|++ ..+.+.++. .+.+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 7888876655 6789999999755 5566663 111245567888999 555555432 2789
Q ss_pred EEEECCCCeeeEEecCCC---CCeEEEEEcCCCCEEEEEe-------------------CCCcEEEEEcCCCCeEEEEec
Q psy6127 290 RYLSLHDNKYVRYFPGHV---RKVSSLNLSPVDDSFISGS-------------------YDKTVRVWDLRQPNNVGMIQL 347 (515)
Q Consensus 290 ~vwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~~ 347 (515)
.++|.++++.+.++.... ..-..+.|+|+++.+++.. .+.+|.+||+.+++.+..+..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 999999999998886322 2234588899999888875 368999999999988888876
Q ss_pred CC---CeeEEEE--CCCCCEEEEEE------CCCcEEEEEeecCCCCCceeeecCC---------------CCCcCeEEE
Q psy6127 348 SG---NKPIAAY--DPEGLAFAIGV------NSDSIKLYDVRSYDKGPFASFKCPG---------------ERGCEWTGL 401 (515)
Q Consensus 348 ~~---~~~~~~~--s~~~~~l~~g~------~dg~i~i~d~~~~~~~~~~~~~~~~---------------~~~~~i~~l 401 (515)
.. ....+.| +|+++++.++. .+++|.+|....+.....+.+.... ........+
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 42 2334545 99999988776 4568877665532111111110000 002345689
Q ss_pred EEcCCCCEEEEEEC-CCcEEEEECCCC---ceeEEeecccc-----------CCCCCEEEEEecCCCEEEEEe
Q psy6127 402 KFSPDGKLILVSTN-GSIIRLFDAFNG---NCVQSLSGVLN-----------NNASPLEATFTPDSQFVASGS 459 (515)
Q Consensus 402 ~~sp~~~~l~~~s~-dg~i~iwd~~~~---~~~~~~~~~~~-----------~~~~i~~~~~sp~g~~l~sgs 459 (515)
.+||||++|+++.. .+.|.+||+... +.+..+..... .......++++|||++|+++.
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999999998874 679999998633 44444432200 011368899999999999887
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.34 E-value=1.5e-09 Score=106.70 Aligned_cols=230 Identities=13% Similarity=0.081 Sum_probs=151.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCe-
Q psy6127 232 DGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKV- 310 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v- 310 (515)
++..++.++.++.|..+|.++|+.+................ +..+++.+ .++.+..+|..+++.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~--~~g~l~~~d~~tG~~~W~~~~~~~~~~ 177 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHT--SNGQLQALNEADGAVKWTVNLDMPSLS 177 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEEC--TTSEEEEEETTTCCEEEEEECCC----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEc--CCCeEEEEECCCCcEEEEEeCCCCcee
Confidence 45678888999999999999999887776543222222222 34555543 68999999999999887765432211
Q ss_pred ----EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeE--------EEECC--CCCEEEEEECCCcEEEEE
Q psy6127 311 ----SSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPI--------AAYDP--EGLAFAIGVNSDSIKLYD 376 (515)
Q Consensus 311 ----~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~s~--~~~~l~~g~~dg~i~i~d 376 (515)
...... +..++.++.++.+..+|.++++.........+... +...| .+..+++++.++.+..+|
T Consensus 178 ~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 178 LRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp -CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred ecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 112222 45688888899999999999998877654321100 11111 356777788899999999
Q ss_pred eecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEE
Q psy6127 377 VRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVA 456 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 456 (515)
.++++. ..... ......+.. ++..+++++.++.+..+|..+++........... ....... .+..|+
T Consensus 256 ~~tG~~----~w~~~---~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~--~~~~~~~--~~~~l~ 322 (376)
T 3q7m_A 256 LRSGQI----MWKRE---LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR--LLTSPVL--YNGNLV 322 (376)
T ss_dssp TTTCCE----EEEEC---CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS--CCCCCEE--ETTEEE
T ss_pred CCCCcE----Eeecc---CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC--cccCCEE--ECCEEE
Confidence 987652 11111 112334443 4668888889999999999999877665422111 1222222 256788
Q ss_pred EEeCCCcEEEEECCCCeEEEEEcC
Q psy6127 457 SGSTDGQVHIWNAERGYKVCVLDG 480 (515)
Q Consensus 457 sgs~dg~I~iwd~~~~~~~~~~~~ 480 (515)
.++.+|.++++|..+|+.+.....
T Consensus 323 v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 323 VGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCcEEEEEec
Confidence 899999999999999999887764
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.33 E-value=5.4e-11 Score=115.75 Aligned_cols=253 Identities=8% Similarity=-0.057 Sum_probs=168.0
Q ss_pred eEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEe--------eCCCeEEEEECCCCeeeEEecCC-------CC
Q psy6127 244 QIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHAST--------KVDATLRYLSLHDNKYVRYFPGH-------VR 308 (515)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--------~~d~~v~vwd~~~~~~~~~~~~h-------~~ 308 (515)
+|.+.|..+++.+.++.....+ .+.++|+++.++++.. ..++.|.+||..+++.+.++.-+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999876666 7999999999998863 24789999999999999887533 12
Q ss_pred CeEEEEEcCCCCEEEEEeC--CCcEEE--EEcCCCCeEEEEecCCCeeEEEECCCC-CEEEEEECCCcEEEEEeec----
Q psy6127 309 KVSSLNLSPVDDSFISGSY--DKTVRV--WDLRQPNNVGMIQLSGNKPIAAYDPEG-LAFAIGVNSDSIKLYDVRS---- 379 (515)
Q Consensus 309 ~v~~l~~~~~~~~l~s~s~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~i~d~~~---- 379 (515)
....++++|||++++.+.. +..+.+ +|..+ +..+...+. ..+.|++ ..+++.+.||.+.+.|+..
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 3567999999999888875 467888 99877 455544321 1223443 3444556778888888765
Q ss_pred -CCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--eeEEeeccc-------cCCCCCEEEEEe
Q psy6127 380 -YDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGN--CVQSLSGVL-------NNNASPLEATFT 449 (515)
Q Consensus 380 -~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~-------~~~~~i~~~~~s 449 (515)
++...... ....-...+. . ++++..++..+. +.+.+.|..... .+..+.... ........++++
T Consensus 199 ~~~v~~~~t-~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 199 AGIVGAQCT-GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CEECCCCSC-TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred CCeEEEEee-eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 11100000 0011112222 3 666666666666 899999986542 222221100 001112237899
Q ss_pred cCCCEEEEEeC---------CCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCC-EEEEee---CCEEEEcCCC
Q psy6127 450 PDSQFVASGST---------DGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYH-MLASAC---SNMAFWIPTL 512 (515)
Q Consensus 450 p~g~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~las~~---~dv~iW~~~~ 512 (515)
|+++.++.+.. ++.+.++|+.+++.+..+.. . .....++|+|||+ ++++.. +++.++|+..
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v-g-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-G-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-E-EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC-C-CCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 99998887643 23566999999999988875 2 3688999999997 444444 3499999865
No 227
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.31 E-value=7.4e-09 Score=96.59 Aligned_cols=250 Identities=10% Similarity=0.026 Sum_probs=160.9
Q ss_pred CEEEEEeCCCeEEEEECCCCeee-----eEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCC
Q psy6127 234 SLLISCSDDDQIIIYDCEQGTSK-----NTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVR 308 (515)
Q Consensus 234 ~~lasgs~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~ 308 (515)
++|+.+.. +.|+.+++...... ..+......+..++|.+++..++++. ..++.|..++...+...........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d-~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTD-ISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEE-TTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEE-CCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555553 47888887654321 11222234578999999888888776 3578999999976654444433335
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCeEEEEecC-CCeeEEEECCCCCEEEEEEC---CCcEEEEEeecCCCC
Q psy6127 309 KVSSLNLSPVDDSFISG-SYDKTVRVWDLRQPNNVGMIQLS-GNKPIAAYDPEGLAFAIGVN---SDSIKLYDVRSYDKG 383 (515)
Q Consensus 309 ~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~~---dg~i~i~d~~~~~~~ 383 (515)
....+++.|++..++.+ ...+.|.+++............. .....++++|++..+..+.. .+.|..+++.....
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~- 158 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR- 158 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-
Confidence 68999999976655554 45678999998755433333222 35778999997666655553 36788888754221
Q ss_pred CceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEe-CC
Q psy6127 384 PFASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGS-TD 461 (515)
Q Consensus 384 ~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs-~d 461 (515)
..+. .........++++|++..|+.+. ..+.|.++|.........+.. ...+..++.. +..|+.+. ..
T Consensus 159 --~~~~--~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~----~~~P~gi~~d--~~~lyva~~~~ 228 (267)
T 1npe_A 159 --RILA--QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG----LQYPFAVTSY--GKNLYYTDWKT 228 (267)
T ss_dssp --EEEE--CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC----CCSEEEEEEE--TTEEEEEETTT
T ss_pred --EEEE--ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC----CCCceEEEEe--CCEEEEEECCC
Confidence 1111 11223567999999887776665 457899999875443333321 1224566654 45555554 56
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCC
Q psy6127 462 GQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYH 496 (515)
Q Consensus 462 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 496 (515)
+.|.++|..+++.+..+..........+++.|++.
T Consensus 229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 89999999999999888652223467888888764
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.30 E-value=2.4e-10 Score=111.02 Aligned_cols=234 Identities=11% Similarity=0.020 Sum_probs=156.5
Q ss_pred ccCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeeeeEecCC------CCceeEEEEecCCCeEEEEEee--C
Q psy6127 219 ENTDKINSLDYSSDGSLLISCSD-----DDQIIIYDCEQGTSKNTINSK------KYGVDLIKFTHSKTTAIHASTK--V 285 (515)
Q Consensus 219 ~h~~~I~~l~~spd~~~lasgs~-----dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~~--~ 285 (515)
+|-..+.+++++|+|+++++-.. ++.|.+||..+++.+..+..+ ......+++.+++..++++..+ .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 46678999999999876665543 578999999999877766532 2346899999876666655421 5
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEE
Q psy6127 286 DATLRYLSLHDNKYVRYFPGHVRKVS-SLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFA 364 (515)
Q Consensus 286 d~~v~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 364 (515)
++.|.+||..+++..+.+.+|..... ...+.++|..+.+.+.++.++.|.. .+..++++|+++.|+
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-------------~~~gia~s~dg~~ly 210 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL-------------GVNGIVLDAENEWLY 210 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC-------------CEEEEEECTTSCEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec-------------ccceeEeccCCCEEE
Confidence 78999999999988777766532211 1345556777777888888776642 267799999999998
Q ss_pred EEECCC-cEEEEEeecCCCCCce------eeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccc
Q psy6127 365 IGVNSD-SIKLYDVRSYDKGPFA------SFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVL 437 (515)
Q Consensus 365 ~g~~dg-~i~i~d~~~~~~~~~~------~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 437 (515)
++..++ .+..++.......... .+... .+......++++++|+.+++...++.|.+||..+++....... .
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~ 288 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-E 288 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-G
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-C
Confidence 887666 4444443211110000 00000 1112344799999999888888889999999866764333321 1
Q ss_pred cCCCCCEEEEEecCCCEEEEEeCCCcEEEEE
Q psy6127 438 NNNASPLEATFTPDSQFVASGSTDGQVHIWN 468 (515)
Q Consensus 438 ~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd 468 (515)
....+..++|.++|.++++.+..+.+.+|+
T Consensus 289 -~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 -KLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp -GGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred -ceecCCeeEECCCCcEEEEeCccccccccc
Confidence 223478999999998888877655554443
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.30 E-value=3.3e-10 Score=114.62 Aligned_cols=257 Identities=15% Similarity=0.102 Sum_probs=177.2
Q ss_pred EEEEeCCCeEEEEECCCCeeeeEecC---------------------------------C------CCceeEEEEec---
Q psy6127 236 LISCSDDDQIIIYDCEQGTSKNTINS---------------------------------K------KYGVDLIKFTH--- 273 (515)
Q Consensus 236 lasgs~dg~i~iwd~~~~~~~~~~~~---------------------------------~------~~~v~~~~~~~--- 273 (515)
+.||+..|.++++-+.+++.++.+.. + .+.......+.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 56777888888888877766655310 0 01122344444
Q ss_pred --CCCeEEEEEeeCCCeEEEEECCCCeeeEEecC-CCCCeEEEEE-c-CCCCEEEEEe------------------CCCc
Q psy6127 274 --SKTTAIHASTKVDATLRYLSLHDNKYVRYFPG-HVRKVSSLNL-S-PVDDSFISGS------------------YDKT 330 (515)
Q Consensus 274 --~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~-h~~~v~~l~~-~-~~~~~l~s~s------------------~dg~ 330 (515)
||+++++.. ..++.|.+.|+.+.++...+.- .......+++ . |+++++++++ .++.
T Consensus 98 ~~DG~~lfVnd-~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMND-KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEc-CCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 788777754 5688899999999998874432 2345888888 5 9999998885 2457
Q ss_pred EEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEECCC--------------------------------------cE
Q psy6127 331 VRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSD--------------------------------------SI 372 (515)
Q Consensus 331 i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--------------------------------------~i 372 (515)
+.+.|..+.+....+...+....++++|+|+++++.+.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999998887766677899999999999888553 35
Q ss_pred EEEEeecCCCCC-ceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCc------------eeEEeecccc
Q psy6127 373 KLYDVRSYDKGP-FASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGN------------CVQSLSGVLN 438 (515)
Q Consensus 373 ~i~d~~~~~~~~-~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~------------~~~~~~~~~~ 438 (515)
.+.|.++.+... ...+... ....++.++|||+++++++ .+.+|.++|+.+.+ ....+.
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~---- 328 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIA----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE---- 328 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEE----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB----
T ss_pred EEEeCcccCCceeEEEEecC----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC----
Confidence 555655521111 1122211 1223799999999988776 57899999998653 222222
Q ss_pred CCCCCEEEEEecCCCEEEEEeCCCcEEEEECCC----------CeEEEEEcCCCCCCe-----EEEEECCCCCEEEEee
Q psy6127 439 NNASPLEATFTPDSQFVASGSTDGQVHIWNAER----------GYKVCVLDGDHPSAV-----QSLQFNPKYHMLASAC 502 (515)
Q Consensus 439 ~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~----------~~~~~~~~~~h~~~V-----~~l~~sp~~~~las~~ 502 (515)
.......++|+|+|....+...|+.|.+||+.+ .+.+.++.. |-.+- .++..+|||++|+++.
T Consensus 329 vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 329 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-ccccccceeccceEeCCCCCEEEEcC
Confidence 223378999999994344556789999999987 667777776 54321 1235689999999986
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.25 E-value=5.5e-09 Score=102.69 Aligned_cols=265 Identities=8% Similarity=-0.035 Sum_probs=163.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEecCCC---------CceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEE
Q psy6127 232 DGSLLISCSDDDQIIIYDCEQGTSKNTINSKK---------YGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRY 302 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~ 302 (515)
++..++.++.++.|..+|.++|+.+....... ..+.+ ....++..+++++ .++.+..+|.++++.+..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~--~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGS--EKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEE--TTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEc--CCCEEEEEECCCCCEEEE
Confidence 45678888889999999999999887765432 22222 2223455666654 689999999999998876
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCee------EEEECCCCCEEEEEECCCcEEEEE
Q psy6127 303 FPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKP------IAAYDPEGLAFAIGVNSDSIKLYD 376 (515)
Q Consensus 303 ~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~s~~~~~l~~g~~dg~i~i~d 376 (515)
.............. +..++.++.++.+..+|.++++.+.......... .... .+..+++++.++.+..+|
T Consensus 129 ~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 129 TKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp EECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEE
T ss_pred EeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEE
Confidence 65433222222222 4578888899999999999999887775543221 1122 245677888899999999
Q ss_pred eecCCCCCceeeecCCCCC--cCeEEEEEcC--CCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCC
Q psy6127 377 VRSYDKGPFASFKCPGERG--CEWTGLKFSP--DGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDS 452 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~--~~i~~l~~sp--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 452 (515)
..+++..-........... ..+..+.-.| .+..+++++.++.+..+|..+|+.+...... ....+.. ++
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-----~~~~~~~--~~ 277 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-----SVNDFIV--DG 277 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-----CEEEEEE--ET
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-----CCCCceE--EC
Confidence 8876521111110000000 0000011111 2467788888999999999999877655421 1333333 46
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee--CCEEEEcCCC
Q psy6127 453 QFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC--SNMAFWIPTL 512 (515)
Q Consensus 453 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~--~dv~iW~~~~ 512 (515)
..++.++.++.+..+|..+|+.+..........+...... +..+..++ +.+..+|...
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTT
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCC
Confidence 7788888999999999999998877763122222222222 23344444 3366666554
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=8.5e-10 Score=116.93 Aligned_cols=271 Identities=13% Similarity=0.084 Sum_probs=178.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEecCCCCc-----------eeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeE
Q psy6127 233 GSLLISCSDDDQIIIYDCEQGTSKNTINSKKYG-----------VDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVR 301 (515)
Q Consensus 233 ~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~ 301 (515)
+..++.++.++.|.-+|..+|+.+..+...... ...+++ .+..+++.+ .|+.+..+|..+|+.+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~--~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGA--WDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEEC--TTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEc--CCCEEEEEECCCCCEEe
Confidence 456777888899999999999999887654221 112222 345566554 69999999999999988
Q ss_pred EecCC-C----CCeEE-EEEcCCCCEEEEEeC------CCcEEEEEcCCCCeEEEEecCCCe------------------
Q psy6127 302 YFPGH-V----RKVSS-LNLSPVDDSFISGSY------DKTVRVWDLRQPNNVGMIQLSGNK------------------ 351 (515)
Q Consensus 302 ~~~~h-~----~~v~~-l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 351 (515)
.+..+ . ..+.+ .... +..++.++. ++.|..+|.++|+.+..+......
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred eecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 77654 1 11211 1111 445555543 799999999999998877542211
Q ss_pred ---------------eEEEECCCCCEEEEEECCC-------------------cEEEEEeecCCCCCceeeecCCC----
Q psy6127 352 ---------------PIAAYDPEGLAFAIGVNSD-------------------SIKLYDVRSYDKGPFASFKCPGE---- 393 (515)
Q Consensus 352 ---------------~~~~~s~~~~~l~~g~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~---- 393 (515)
..++++|++..++.++.++ .|..+|.++++.. -.+....+
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~--W~~~~~~~d~wd 308 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK--WHYQETPGDNWD 308 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE--EEEESSTTCCSC
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE--EEEecCCCcccc
Confidence 2478899999999887664 4888888876521 11111111
Q ss_pred --CCcCeEEEEEcCCC---CEEEEEECCCcEEEEECCCCceeEEeeccccC--------CC-------------------
Q psy6127 394 --RGCEWTGLKFSPDG---KLILVSTNGSIIRLFDAFNGNCVQSLSGVLNN--------NA------------------- 441 (515)
Q Consensus 394 --~~~~i~~l~~sp~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~--------~~------------------- 441 (515)
......-+....+| ..++.++.+|.++++|..+|+.+..+...... ..
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 01122233444477 67889999999999999999987665422100 00
Q ss_pred -----CCEEEEEecCCCEEEEEeC-------------------------------------------CCcEEEEECCCCe
Q psy6127 442 -----SPLEATFTPDSQFVASGST-------------------------------------------DGQVHIWNAERGY 473 (515)
Q Consensus 442 -----~i~~~~~sp~g~~l~sgs~-------------------------------------------dg~I~iwd~~~~~ 473 (515)
.-..++++|++.++++... .|.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 0125789999888887643 2789999999999
Q ss_pred EEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 474 KVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 474 ~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
.+.... +..++....+..++.+++.++.+ +++||....
T Consensus 469 ~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 469 AAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp EEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred EEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 988876 34455555566667777776644 788887654
No 232
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=5.3e-10 Score=119.31 Aligned_cols=242 Identities=10% Similarity=0.048 Sum_probs=156.5
Q ss_pred eEEEEEEeeccccceeeeeeeCCCCcEEEEccceeeeeEeeeeccccCCc--EEEEEEcCCCCEEEEEeCCC--------
Q psy6127 174 VSLFVTFVSRVLTMAASLAHSRSSRTITKCSENLVRSYRVAKVFRENTDK--INSLDYSSDGSLLISCSDDD-------- 243 (515)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~s~~~~~~i~~wd~~~~~~~~~~~~~~h~~~--I~~l~~spd~~~lasgs~dg-------- 243 (515)
.+..+++.+....++..+..++++...++++| +.+++.+.. +... ...++|+ ||+.|+.++.+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~d--l~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMD--VESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEE--TTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEE--CCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 34445555555444444444555567888888 666654432 2222 3567899 999999998874
Q ss_pred -----eEEEEECCCCee--eeEec--C-CCCceeEEEEecCCCeEEEEEee--CCCeEEEEECCCCe-eeEEecCCCCCe
Q psy6127 244 -----QIIIYDCEQGTS--KNTIN--S-KKYGVDLIKFTHSKTTAIHASTK--VDATLRYLSLHDNK-YVRYFPGHVRKV 310 (515)
Q Consensus 244 -----~i~iwd~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~l~~~s~~--~d~~v~vwd~~~~~-~~~~~~~h~~~v 310 (515)
.|++|++.++.. ...+. . +......+.|+|+++.+++.... .++.++++|+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 399999987653 22222 2 33457789999999998776642 23589999998763 345555566666
Q ss_pred EEEEEcCCCCEEEEEe-CC---CcEEEEEcCCCCe---EEEEecCCCeeEEEECCCCCEEEEEECCC---cEEEEEeecC
Q psy6127 311 SSLNLSPVDDSFISGS-YD---KTVRVWDLRQPNN---VGMIQLSGNKPIAAYDPEGLAFAIGVNSD---SIKLYDVRSY 380 (515)
Q Consensus 311 ~~l~~~~~~~~l~s~s-~d---g~i~iwd~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~i~d~~~~ 380 (515)
... ++++|..|+..+ .+ +.|..+|+.++.. .........+. .|+++++.|+....++ .|++||+...
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 555 666677555444 33 5799999988765 33334333333 8999999888776544 6788887642
Q ss_pred CCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCce
Q psy6127 381 DKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG----SIIRLFDAFNGNC 429 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d----g~i~iwd~~~~~~ 429 (515)
. ...........+..+.++|+++.++....+ +.++.||+.+++.
T Consensus 361 ~-----~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 361 R-----VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp E-----EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred e-----eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 2 112222234456678888888877665544 7899999988764
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.25 E-value=2.3e-10 Score=110.22 Aligned_cols=272 Identities=13% Similarity=0.044 Sum_probs=171.5
Q ss_pred EeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEE
Q psy6127 212 RVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRY 291 (515)
Q Consensus 212 ~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~v 291 (515)
+....+..+...+.++...++|. +..++.+ +..+|. +++....+............. +..+++++ .++.+..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t--~~~~l~~ 121 (330)
T 3hxj_A 50 SVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTS--MDGHLYA 121 (330)
T ss_dssp CEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEEC--TTSEEEE
T ss_pred cEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEe--cCCEEEE
Confidence 33344444555667788877775 4445544 888886 666655444333333333333 44555544 6899999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC-CCeeEEEECCCCCEEEEEECCC
Q psy6127 292 LSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS-GNKPIAAYDPEGLAFAIGVNSD 370 (515)
Q Consensus 292 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~~dg 370 (515)
+|.. ++.......+...+.++...+++. ++.++.++.+..+|.. ++....+... ..+..+..++++...+.. +
T Consensus 122 ~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~ 195 (330)
T 3hxj_A 122 INTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---D 195 (330)
T ss_dssp ECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---S
T ss_pred EcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---C
Confidence 9988 777766665556667777777776 5667788999999998 7776666443 335567777788755543 7
Q ss_pred cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEec
Q psy6127 371 SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTP 450 (515)
Q Consensus 371 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp 450 (515)
.+..+| .++. ...........+.++...++|. +.+++.++.+..+| .+++....+...... +..+.+.+
T Consensus 196 ~l~~~d-~~g~-----~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~---~~~~~~~~ 264 (330)
T 3hxj_A 196 KVYAIN-PDGT-----EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRI---ESSPVIGN 264 (330)
T ss_dssp SEEEEC-TTSC-----EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCC---CSCCEECT
T ss_pred EEEEEC-CCCc-----EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCc---cccceEcC
Confidence 888888 4432 1111112234466788888875 55677778888887 466665555432221 33455555
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee-CCEEEEcCC
Q psy6127 451 DSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC-SNMAFWIPT 511 (515)
Q Consensus 451 ~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~-~dv~iW~~~ 511 (515)
++ .|..++.+|.+..+|. +++.+..+.. ....+.++...+++.+.+.+. +.+++...+
T Consensus 265 ~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~-~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 265 TD-TIYFGSYDGHLYAINP-DGTEKWNFET-GSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp TS-CEEEECTTCEEEEECT-TSCEEEEEEC-SSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred CC-eEEEecCCCCEEEECC-CCcEEEEEEc-CCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 55 4666778888999996 7777776665 456677888888888766544 446665544
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.21 E-value=6.4e-09 Score=101.71 Aligned_cols=225 Identities=12% Similarity=0.092 Sum_probs=152.0
Q ss_pred cCCCeEEEEEeeCCCeEEEEECCCC----eeeEEec------C-CCCCeEEEEEcCCCCEEEEEeCC------CcEEEEE
Q psy6127 273 HSKTTAIHASTKVDATLRYLSLHDN----KYVRYFP------G-HVRKVSSLNLSPVDDSFISGSYD------KTVRVWD 335 (515)
Q Consensus 273 ~~~~~l~~~s~~~d~~v~vwd~~~~----~~~~~~~------~-h~~~v~~l~~~~~~~~l~s~s~d------g~i~iwd 335 (515)
++++++++.+ -.+++|.++|+.+. +.+.++. . .......+...|+| .++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~-l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPG-LRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEB-TTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEcc-CCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 6777776654 57899999999765 5556552 1 12245678899999 77776655 7899999
Q ss_pred cCCCCeEEEEecCCC----eeEEEECCCCCEEEEEE-------------------CCCcEEEEEeecCCCCCceeeecCC
Q psy6127 336 LRQPNNVGMIQLSGN----KPIAAYDPEGLAFAIGV-------------------NSDSIKLYDVRSYDKGPFASFKCPG 392 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~----~~~~~~s~~~~~l~~g~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 392 (515)
.++++.+..+..... ...+.|+|+++.+++.. .+.+|.+||+.+.+ ....+...
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg- 247 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLG- 247 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESC-
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecC-
Confidence 999999998864422 23477899999888874 36899999998642 22222221
Q ss_pred CCCcCeEEEEE--cCCCCEEEEEEC------CCcEEEEECCCCce--eEEe--eccc-------------cCCCCCEEEE
Q psy6127 393 ERGCEWTGLKF--SPDGKLILVSTN------GSIIRLFDAFNGNC--VQSL--SGVL-------------NNNASPLEAT 447 (515)
Q Consensus 393 ~~~~~i~~l~~--sp~~~~l~~~s~------dg~i~iwd~~~~~~--~~~~--~~~~-------------~~~~~i~~~~ 447 (515)
........+.| +|++++++++++ +++|.+|....++. .+.+ .... .....+..+.
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 12233445656 999999888774 56887776554432 1111 1100 0013478899
Q ss_pred EecCCCEEEEEeC-CCcEEEEECC---CCeEEEEEcCC-------C---C---CCeEEEEECCCCCEEEEee
Q psy6127 448 FTPDSQFVASGST-DGQVHIWNAE---RGYKVCVLDGD-------H---P---SAVQSLQFNPKYHMLASAC 502 (515)
Q Consensus 448 ~sp~g~~l~sgs~-dg~I~iwd~~---~~~~~~~~~~~-------h---~---~~V~~l~~sp~~~~las~~ 502 (515)
+||||++|+++.. .+.|.+||+. +.+.+..+..+ | . +.-..++++|||++|..+.
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999999988764 5789999985 34666666531 0 0 1357899999999988887
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.21 E-value=6.5e-10 Score=112.49 Aligned_cols=241 Identities=12% Similarity=0.104 Sum_probs=167.4
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCeeeeEecCC-CCceeEEEE-e-cCCCeEEEEE----------------eeCCCeEE
Q psy6127 231 SDGSLLISCSD-DDQIIIYDCEQGTSKNTINSK-KYGVDLIKF-T-HSKTTAIHAS----------------TKVDATLR 290 (515)
Q Consensus 231 pd~~~lasgs~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~s----------------~~~d~~v~ 290 (515)
+||++++.... ++.|.+.|+.+.++...+... ......+++ . |++.++++++ ...++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888877665 567999999999988855432 245788888 4 8999987764 12456899
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------cEE
Q psy6127 291 YLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDK--------------------------------------TVR 332 (515)
Q Consensus 291 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--------------------------------------~i~ 332 (515)
++|.++.+...++.--. ....++++|+|+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999998887765222 356688999999988888553 478
Q ss_pred EEEcCC--CCe-EEEEecCCCeeEEEECCCCCEEEEEE-CCCcEEEEEeecCC------CCCceeeecCCCCCcCeEEEE
Q psy6127 333 VWDLRQ--PNN-VGMIQLSGNKPIAAYDPEGLAFAIGV-NSDSIKLYDVRSYD------KGPFASFKCPGERGCEWTGLK 402 (515)
Q Consensus 333 iwd~~~--~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~~i~~l~ 402 (515)
+.|.++ ++. +..+........+.++|||+++++++ .+.+|.++|+.+.+ ..+.......-........++
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 888887 555 66776666788899999999877765 67899999998631 111111111223334567999
Q ss_pred EcCCCCEEEE-EECCCcEEEEECCC----------CceeEEeeccccC--CCCCEEEEEecCCCEEEEEeC---CCc---
Q psy6127 403 FSPDGKLILV-STNGSIIRLFDAFN----------GNCVQSLSGVLNN--NASPLEATFTPDSQFVASGST---DGQ--- 463 (515)
Q Consensus 403 ~sp~~~~l~~-~s~dg~i~iwd~~~----------~~~~~~~~~~~~~--~~~i~~~~~sp~g~~l~sgs~---dg~--- 463 (515)
|+|+| ++++ .-.|+.|.+||+.+ .+.+..+..+... ...-....++|||++|++... |..
T Consensus 338 F~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~ 416 (595)
T 1fwx_A 338 FDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNV 416 (595)
T ss_dssp ECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCC
T ss_pred ECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccC
Confidence 99999 5554 45789999999877 4556666554321 000112345799999998853 332
Q ss_pred -------EEEEECCCCe
Q psy6127 464 -------VHIWNAERGY 473 (515)
Q Consensus 464 -------I~iwd~~~~~ 473 (515)
-.++|+..++
T Consensus 417 gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 417 GPLKPENDQLIDISGDK 433 (595)
T ss_dssp CSSCCEEEEEEECSSSS
T ss_pred CCCCCCcceEEEcCCCc
Confidence 1789996655
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=3.1e-09 Score=112.87 Aligned_cols=273 Identities=12% Similarity=0.137 Sum_probs=173.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEecCCCCc----------e-eEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeE
Q psy6127 233 GSLLISCSDDDQIIIYDCEQGTSKNTINSKKYG----------V-DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVR 301 (515)
Q Consensus 233 ~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~ 301 (515)
+..++.++.++.|..+|..+|+.+..+...... + ..+.. .+..+++++ .|+.+..+|.++|+.+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~--~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGV--LDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC--TTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEc--cCCEEEEEECCCCCEee
Confidence 557788888899999999999999887644321 0 11222 345555554 69999999999999887
Q ss_pred EecCC--CCCeEEEEEcC--CCCEEEEEe------CCCcEEEEEcCCCCeEEEEecCC--C-------------------
Q psy6127 302 YFPGH--VRKVSSLNLSP--VDDSFISGS------YDKTVRVWDLRQPNNVGMIQLSG--N------------------- 350 (515)
Q Consensus 302 ~~~~h--~~~v~~l~~~~--~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~--~------------------- 350 (515)
.+... ......+..+| .+..++.++ .++.|..||.++|+.+..+.... .
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred eecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 66532 11111111111 133444443 37899999999999887764210 0
Q ss_pred -----------eeEEEECCCCCEEEEEECCCc-------------------EEEEEeecCCCCCceeeecCCC------C
Q psy6127 351 -----------KPIAAYDPEGLAFAIGVNSDS-------------------IKLYDVRSYDKGPFASFKCPGE------R 394 (515)
Q Consensus 351 -----------~~~~~~s~~~~~l~~g~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~------~ 394 (515)
-..++++|++..+++++.++. |..+|.++++..- .+....+ .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W--~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW--HYQTTPGDAWDYTA 303 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEE--EEESSTTCCSCCCC
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeE--eeecCCcccccccC
Confidence 024788999999999887764 8999998875221 1111101 1
Q ss_pred CcCeEEEEEcCCCC---EEEEEECCCcEEEEECCCCceeEEeeccc-------------------------cC-------
Q psy6127 395 GCEWTGLKFSPDGK---LILVSTNGSIIRLFDAFNGNCVQSLSGVL-------------------------NN------- 439 (515)
Q Consensus 395 ~~~i~~l~~sp~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~------- 439 (515)
..+..-.....+|+ .++.++.+|.++++|..+|+.+....... ..
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p 383 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP 383 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence 11222222223565 78889999999999999999874332110 00
Q ss_pred ----CCCCEEEEEecCCCEEEEEeC---------------------------------------------CCcEEEEECC
Q psy6127 440 ----NASPLEATFTPDSQFVASGST---------------------------------------------DGQVHIWNAE 470 (515)
Q Consensus 440 ----~~~i~~~~~sp~g~~l~sgs~---------------------------------------------dg~I~iwd~~ 470 (515)
...-..++++|+..++++... +|.|+.||+.
T Consensus 384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~ 463 (689)
T 1yiq_A 384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV 463 (689)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence 000123789999888887532 3779999999
Q ss_pred CCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 471 RGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 471 ~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
+|+.+...+. + .++..-.+...+.+++.++.+ ++.||.+.+
T Consensus 464 tG~~~W~~~~-~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 464 KQQAAWEVPY-V-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp TTEEEEEEEE-S-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CCCeEeEccC-C-CCccCccceECCCEEEEECCCCcEEEEECCCC
Confidence 9999988864 3 334444555566777777654 888887654
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.14 E-value=1.8e-11 Score=120.20 Aligned_cols=188 Identities=16% Similarity=0.135 Sum_probs=108.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCC-e
Q psy6127 232 DGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRK-V 310 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~-v 310 (515)
++..+++++.||.|+.||..+|+.+..+.. ..+.+..+..++..++. ++.|+.++.||.++++.+..+..+... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~--~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLP--DPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEE--CTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEE--eCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999999999988876 44555555556544433 247999999999999887666544211 1
Q ss_pred E-EEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeee
Q psy6127 311 S-SLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFK 389 (515)
Q Consensus 311 ~-~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 389 (515)
. +..+. ++..+++++.|+.++.||.++|+.+..+.... ...++|++..+++++.++.++.||.++++..-.....
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 0 00111 35578888899999999999999887765443 2345678889999999999999999887532221111
Q ss_pred cCCCCCcCeEEEEEcCCC---CEEEEEECCCcEEEEECCCCceeEEee
Q psy6127 390 CPGERGCEWTGLKFSPDG---KLILVSTNGSIIRLFDAFNGNCVQSLS 434 (515)
Q Consensus 390 ~~~~~~~~i~~l~~sp~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~ 434 (515)
. .....++++. ..+++++.+|.++.||..+|+.+....
T Consensus 160 ~-------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 160 D-------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp E-------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred c-------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 0 1122333332 467778999999999999999877665
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.13 E-value=3.8e-09 Score=101.53 Aligned_cols=217 Identities=12% Similarity=0.034 Sum_probs=144.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEE
Q psy6127 233 GSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSS 312 (515)
Q Consensus 233 ~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 312 (515)
+..+..++.++.+..+|.. ++.......+...+.++...+++. +++++ .++.+..+|.. ++....+......+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt--~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGS--NDNYLYAINPD-GTEKWRFKTNDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC--TTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEc--CCCEEEEECCC-CCEeEEEecCCCceee
Confidence 4567788889999999988 777777666655666677766665 44443 57999999998 8777666655666777
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC-CCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecC
Q psy6127 313 LNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS-GNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCP 391 (515)
Q Consensus 313 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 391 (515)
+...+++...+ ++ +.+..+| .+++........ ..+.++..+++|.. .+++.++.+..+|... . .......
T Consensus 182 ~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~g-~--~~~~~~~- 252 (330)
T 3hxj_A 182 ASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINPDG-T--EKWRFKT- 252 (330)
T ss_dssp CEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECTTS-C--EEEEEEC-
T ss_pred eEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECCCC-C--EeEEeeC-
Confidence 88877777544 44 8899999 777766655433 34667788888754 4566778888886422 1 1112221
Q ss_pred CCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy6127 392 GERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAER 471 (515)
Q Consensus 392 ~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~ 471 (515)
....+..+.+.+++ .|.+++.+|.+..+|. +++....+... ...+.++...++|. |..++.+|.+++...+.
T Consensus 253 --~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~---~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 253 --GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG---SWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp --SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS---SCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred --CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC---CccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 11222345555565 5667888888999995 67766655432 22356677777776 55588899999887654
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.13 E-value=2.6e-11 Score=119.13 Aligned_cols=203 Identities=12% Similarity=0.070 Sum_probs=119.5
Q ss_pred CCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCC--e
Q psy6127 274 SKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGN--K 351 (515)
Q Consensus 274 ~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~ 351 (515)
++..+++++ .|+.|+.||..+|+.+..+.. +.+.+..+.+++..+++++.|+.|+.||.++++.+........ +
T Consensus 8 ~~~~v~~gs--~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVST--LDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEE--TTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEc--CCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 355666554 699999999999999988875 4555556667777888888999999999999887665533210 1
Q ss_pred e-EEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcee
Q psy6127 352 P-IAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCV 430 (515)
Q Consensus 352 ~-~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~ 430 (515)
. ...+. .+..+++++.++.++.||.++++... ....+. ...++|++..+++++.|+.++.||.++|+.+
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w-----~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ-----TLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE-----EecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 0 11111 35567788889999999999876321 111111 2345678889999999999999999999876
Q ss_pred EEeeccccCCCCCEEEEEecCC---CEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeE-EEEECCCCCE
Q psy6127 431 QSLSGVLNNNASPLEATFTPDS---QFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQ-SLQFNPKYHM 497 (515)
Q Consensus 431 ~~~~~~~~~~~~i~~~~~sp~g---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~ 497 (515)
..+..... ...+++++. ..+++++.||.++.||..+|+.+..... ..++. ...+++++..
T Consensus 154 W~~~~~~~-----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~--~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 154 WNATYFDY-----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY--ASPVVAFYVWQREGLR 217 (369)
T ss_dssp CEEEEEEE-----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC--SSCEEEEEECTTSSCE
T ss_pred EeEecccc-----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC--CCceEEEEEecCCceE
Confidence 65543211 112233332 4577788999999999999999887763 44554 4566677754
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.13 E-value=8.1e-09 Score=109.32 Aligned_cols=266 Identities=13% Similarity=0.163 Sum_probs=169.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEecCCC----CceeEEEEecCCCeEEEEEee----CCCeEEEEECCCCeeeEEec
Q psy6127 233 GSLLISCSDDDQIIIYDCEQGTSKNTINSKK----YGVDLIKFTHSKTTAIHASTK----VDATLRYLSLHDNKYVRYFP 304 (515)
Q Consensus 233 ~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~s~~----~d~~v~vwd~~~~~~~~~~~ 304 (515)
+..++.++.|+.+..+|.++|+.+..+.... ..+...-.. .+..+++.+++ .++.|..+|.++|+.+..+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 5578888899999999999999988776431 111110000 13445544322 25899999999999887764
Q ss_pred CC---C----------------------------CCeEEEEEcCCCCEEEEEeCCC-------------------cEEEE
Q psy6127 305 GH---V----------------------------RKVSSLNLSPVDDSFISGSYDK-------------------TVRVW 334 (515)
Q Consensus 305 ~h---~----------------------------~~v~~l~~~~~~~~l~s~s~dg-------------------~i~iw 334 (515)
.. . .....+++.|++..++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 21 0 0112468888888888887766 39999
Q ss_pred EcCCCCeEEEEecC----------CCeeEEEECCCCC---EEEEEECCCcEEEEEeecCCCCCce---------ee----
Q psy6127 335 DLRQPNNVGMIQLS----------GNKPIAAYDPEGL---AFAIGVNSDSIKLYDVRSYDKGPFA---------SF---- 388 (515)
Q Consensus 335 d~~~~~~~~~~~~~----------~~~~~~~~s~~~~---~l~~g~~dg~i~i~d~~~~~~~~~~---------~~---- 388 (515)
|.++++.+..++.. .+.....+..+|+ .++.++.+|.++++|..+++..... .+
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 99999998887543 1122222334665 6888889999999998876521000 00
Q ss_pred -----------------ecCCC-CCcCeEEEEEcCCCCEEEEEE------------------------------------
Q psy6127 389 -----------------KCPGE-RGCEWTGLKFSPDGKLILVST------------------------------------ 414 (515)
Q Consensus 389 -----------------~~~~~-~~~~i~~l~~sp~~~~l~~~s------------------------------------ 414 (515)
.++.. .......++++|+...+++..
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 00000 000122478888877666521
Q ss_pred CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCC
Q psy6127 415 NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPK 494 (515)
Q Consensus 415 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~ 494 (515)
.+|.|..||..+++.+-....... .....+...+.+++.++.||.++.||.++|+.+..+.....-.-.-+.+..+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~----~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~ 511 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTH----WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA 511 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred ccceEEEEeCCCCcEEEEccCCCC----CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence 237899999999998776654322 2334555678899999999999999999999998887521111122334445
Q ss_pred CC-EEEEeeC
Q psy6127 495 YH-MLASACS 503 (515)
Q Consensus 495 ~~-~las~~~ 503 (515)
|+ +++.+++
T Consensus 512 G~~yva~~~G 521 (668)
T 1kv9_A 512 GRQYVAIMAG 521 (668)
T ss_dssp TEEEEEEEEC
T ss_pred CEEEEEEEec
Confidence 55 5555543
No 241
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.10 E-value=1.3e-07 Score=90.61 Aligned_cols=241 Identities=12% Similarity=0.044 Sum_probs=154.2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecC--------------------CCCceeEEEEecCCCeEEEE
Q psy6127 222 DKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINS--------------------KKYGVDLIKFTHSKTTAIHA 281 (515)
Q Consensus 222 ~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~~~ 281 (515)
....+++|+++|++++++..++.|..|+..+++.. .+.. ....+..+++.+++..++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 44577889999988888888999999998765432 2210 01347889999844566666
Q ss_pred EeeCCCeEEEEECCCCeeeEEe---cC-CCCCeEEEEEcC-CCCEEEEEeC-----------------CCcEEEEEcCCC
Q psy6127 282 STKVDATLRYLSLHDNKYVRYF---PG-HVRKVSSLNLSP-VDDSFISGSY-----------------DKTVRVWDLRQP 339 (515)
Q Consensus 282 s~~~d~~v~vwd~~~~~~~~~~---~~-h~~~v~~l~~~~-~~~~l~s~s~-----------------dg~i~iwd~~~~ 339 (515)
. ..+.+..+|..+++..... .+ .......+++.+ +|+..++-.. ++.|..||..++
T Consensus 98 d--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 98 D--CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp E--TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred E--CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 4 3556888987765432211 11 123578899999 8986665432 367888998777
Q ss_pred CeEEEEecCCCeeEEEECCCCCEEEEE-ECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEEC---
Q psy6127 340 NNVGMIQLSGNKPIAAYDPEGLAFAIG-VNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTN--- 415 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~--- 415 (515)
+.............++++|+++.+.++ +..+.|..|++..........+.. ... ...++++++|++.++...
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEETT
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCccc
Confidence 654333322346679999999876665 456899999987532222222221 112 678999999986665544
Q ss_pred -------CCcEEEEECCCCceeEEeeccccC-CCCCEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy6127 416 -------GSIIRLFDAFNGNCVQSLSGVLNN-NASPLEATFTPDSQFVASGSTDGQVHIWNAER 471 (515)
Q Consensus 416 -------dg~i~iwd~~~~~~~~~~~~~~~~-~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~ 471 (515)
.+.|..+|. .++.+..+....+. ...+..+++ .+++++++...++.|..+++..
T Consensus 252 ~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 466888886 57777666543221 233666666 4565555555678899998753
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=4.8e-08 Score=89.86 Aligned_cols=210 Identities=10% Similarity=-0.001 Sum_probs=143.3
Q ss_pred eeeEeeeeccccCC--cEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeeEecCCCC-ceeEEEEecCCCeEEEEEe
Q psy6127 209 RSYRVAKVFRENTD--KINSLDYSSDGSLLISCSD--DDQIIIYDCEQGTSKNTINSKKY-GVDLIKFTHSKTTAIHAST 283 (515)
Q Consensus 209 ~~~~~~~~~~~h~~--~I~~l~~spd~~~lasgs~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~s~ 283 (515)
.+++.+.++. |.. ....++|+||+.+.++.+. ++.|++.|..+++.+..+..... ....+++ +++.++.++
T Consensus 7 ~~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t- 82 (266)
T 2iwa_A 7 YIVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVV- 82 (266)
T ss_dssp EEEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEE-
T ss_pred cCceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEE-
Confidence 3456666663 443 4689999998755555443 58999999999999888764322 2223444 466777776
Q ss_pred eCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCC------CeeEEEEC
Q psy6127 284 KVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSG------NKPIAAYD 357 (515)
Q Consensus 284 ~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~s 357 (515)
..++.+.++|..+.+.+.++...... ...+++||+.++.+..++.|.++|..+.+....+.... ..+.+.+.
T Consensus 83 ~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 83 WLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred ecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 57999999999999998887532111 23355678877777778999999999999888875432 24567777
Q ss_pred CCCCEEEEEECCCcEEEEEeecCCCCCceeeecC----------CCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCC
Q psy6127 358 PEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCP----------GERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFN 426 (515)
Q Consensus 358 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~ 426 (515)
+|..++....++.|.+.|..+++.. ..+... ........+++|+|+++.+++++ ..+.+...++..
T Consensus 161 -dg~lyvn~~~~~~V~vID~~tg~V~--~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAKDGTLL--GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETTTCCEE--EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred -CCEEEEecCCCCeEEEEECCCCcEE--EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 6755555556889999999886522 222211 01123567999999988766655 567788877654
Q ss_pred C
Q psy6127 427 G 427 (515)
Q Consensus 427 ~ 427 (515)
.
T Consensus 238 ~ 238 (266)
T 2iwa_A 238 V 238 (266)
T ss_dssp C
T ss_pred c
Confidence 3
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.03 E-value=2.5e-08 Score=91.75 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=133.4
Q ss_pred eeeEEecCCCC--CeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEE-CCCcE
Q psy6127 298 KYVRYFPGHVR--KVSSLNLSPVDDSFISGSY--DKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGV-NSDSI 372 (515)
Q Consensus 298 ~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i 372 (515)
+.+.++. |.. ....+.|+|++.++++.+. ++.|.++|+.+++.+..+..........+.++++.+..+. .++.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEE
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEE
Confidence 4455553 443 3689999998755555443 5899999999999999886554333333333455555544 67899
Q ss_pred EEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecccc--CCCCCEEEEEec
Q psy6127 373 KLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLN--NNASPLEATFTP 450 (515)
Q Consensus 373 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~i~~~~~sp 450 (515)
.++|..+.+. ...+... ... ...+++||+.++++..++.+.++|..+.+....+..... ....++.+.|.
T Consensus 89 ~viD~~t~~v--~~~i~~g--~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 89 FIYDRRTLSN--IKNFTHQ--MKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp EEEETTTTEE--EEEEECC--SSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEECCCCcE--EEEEECC--CCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 9999887542 2222221 111 233556888888777889999999999988888774322 12235678888
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcCC------------CCCCeEEEEECCCCCEEEEeeC
Q psy6127 451 DSQFVASGSTDGQVHIWNAERGYKVCVLDGD------------HPSAVQSLQFNPKYHMLASACS 503 (515)
Q Consensus 451 ~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------------h~~~V~~l~~sp~~~~las~~~ 503 (515)
+|...+....++.|.+.|..+++.+..+... .....+.++|+|+++.+..+++
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 6755555556789999999999999988641 0135689999999876666653
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.03 E-value=3.2e-08 Score=89.95 Aligned_cols=202 Identities=13% Similarity=0.155 Sum_probs=139.0
Q ss_pred eeeEEecCCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEE-CCCcE
Q psy6127 298 KYVRYFPGHVRK--VSSLNLSPVDDSFISGSYDK--TVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGV-NSDSI 372 (515)
Q Consensus 298 ~~~~~~~~h~~~--v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i 372 (515)
+.+.++. |... ...+.|+ ++.++.+.+.+| .|+.+|+++++.+..+..........+.++++.+.... .++.+
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 3455563 5443 4788998 677777777766 89999999999999987766554444444555665554 58899
Q ss_pred EEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecccc--CCCCCEEEEEec
Q psy6127 373 KLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLN--NNASPLEATFTP 450 (515)
Q Consensus 373 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~i~~~~~sp 450 (515)
.+||..+.+ ....+.... . ...++++++.|+.+..++.|.++|..+.+....+..... ....++.+.|.
T Consensus 110 ~v~D~~t~~--~~~ti~~~~-e-----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 110 FVWNIRNLR--QVRSFNYDG-E-----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp EEEETTTCC--EEEEEECSS-C-----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEECccCc--EEEEEECCC-C-----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 999998855 222333221 1 123335777787777778899999999998888765321 11224567776
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcCC-----------CCCCeEEEEECCCCCEEEEeeCC-EEEEcC
Q psy6127 451 DSQFVASGSTDGQVHIWNAERGYKVCVLDGD-----------HPSAVQSLQFNPKYHMLASACSN-MAFWIP 510 (515)
Q Consensus 451 ~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-----------h~~~V~~l~~sp~~~~las~~~d-v~iW~~ 510 (515)
+|+..+..-.++.|.+.|..+|+.+..+... -.+..+.+||+|+++.|..++.. =++|.+
T Consensus 181 ~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev 252 (262)
T 3nol_A 181 DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI 252 (262)
T ss_dssp TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence 6765555556889999999999999888641 02356899999988888877765 344443
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.99 E-value=1.2e-06 Score=81.36 Aligned_cols=221 Identities=9% Similarity=0.009 Sum_probs=143.7
Q ss_pred CcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeee
Q psy6127 222 DKINSLDYSSDGSLLISCS-DDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYV 300 (515)
Q Consensus 222 ~~I~~l~~spd~~~lasgs-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~ 300 (515)
..+..++|+|++..|+.+. .++.|..++...+.....+.........+++.+++..++++. ...+.|.+++.+.....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d-~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTD-SQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEE-CCCCEEEEEEcCCCCEE
Confidence 4578999999766665554 568999999876544433433335688999999888887776 35789999998754332
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCeEEEEec-CCCeeEEEECCCCCEEEEEE-CCCcEEEE
Q psy6127 301 RYFPGHVRKVSSLNLSPVDDSFISGSY---DKTVRVWDLRQPNNVGMIQL-SGNKPIAAYDPEGLAFAIGV-NSDSIKLY 375 (515)
Q Consensus 301 ~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~-~dg~i~i~ 375 (515)
............++++|++..|+.+.. .+.|..+++........... -.....++++|++..|..+. ..+.|..+
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 223222356789999997776665554 36888888764432222211 23467899999877665554 56789999
Q ss_pred EeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCC
Q psy6127 376 DVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQ 453 (515)
Q Consensus 376 d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 453 (515)
|...... .... .. ......++.. +..++.+. ..+.|..+|..+++.+..+.... ......+++.|++.
T Consensus 195 ~~~g~~~---~~~~--~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~--~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 195 NPAQPGR---RKVL--EG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK--QTRLYGITIALSQC 263 (267)
T ss_dssp ETTEEEE---EEEE--EC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS--CCCCCCEEEECSCC
T ss_pred ecCCCce---EEEe--cC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc--ccccceeeecCccC
Confidence 9865321 1111 11 1223466664 45565555 56899999999999888876422 11257788888764
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.98 E-value=1.2e-07 Score=86.23 Aligned_cols=200 Identities=15% Similarity=0.103 Sum_probs=137.0
Q ss_pred eeeEeeeeccccCCc--EEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEee
Q psy6127 209 RSYRVAKVFRENTDK--INSLDYSSDGSLLISCSDDD--QIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTK 284 (515)
Q Consensus 209 ~~~~~~~~~~~h~~~--I~~l~~spd~~~lasgs~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~ 284 (515)
..++.++++ .|... ...+.|+ ++.+..+.+.+| .|+.+|+++++.+..+.... ........++++.++.++ .
T Consensus 29 ~~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~lt-w 104 (262)
T 3nol_A 29 YDYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLT-W 104 (262)
T ss_dssp EEEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEE-S
T ss_pred cceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEE-e
Confidence 345666666 45433 4788998 677777777766 89999999999998886543 333333444577887776 4
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC------CCeeEEEECC
Q psy6127 285 VDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS------GNKPIAAYDP 358 (515)
Q Consensus 285 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~s~ 358 (515)
.++.+.++|.++.+.+.++.-.. .- ..+.++++.|+.+..++.|.++|..+.+.+..+... ...+.+.+.
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~-eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDG-EG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS-CC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred eCCEEEEEECccCcEEEEEECCC-Cc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 79999999999999998886432 22 233356777777666788999999999988887542 123346665
Q ss_pred CCCEEEEEECCCcEEEEEeecCCCCCceeeec-------CCCCCcCeEEEEEcCCCCEEEEEECC
Q psy6127 359 EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKC-------PGERGCEWTGLKFSPDGKLILVSTNG 416 (515)
Q Consensus 359 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~~i~~l~~sp~~~~l~~~s~d 416 (515)
+|...+..-.++.|.+.|.++++......+.. ........++|+|+|+++.|++.+..
T Consensus 181 ~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 181 DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 67655555568899999988765221111110 01123456899999999888887753
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.98 E-value=9.7e-08 Score=99.01 Aligned_cols=270 Identities=12% Similarity=0.094 Sum_probs=166.0
Q ss_pred EEEcCCCCE----EEEEeCCCeEEEEECCCCeeeeEecCCCC----ceeE-EEEecCCCeEEEEEee----CCCeEEEEE
Q psy6127 227 LDYSSDGSL----LISCSDDDQIIIYDCEQGTSKNTINSKKY----GVDL-IKFTHSKTTAIHASTK----VDATLRYLS 293 (515)
Q Consensus 227 l~~spd~~~----lasgs~dg~i~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~s~~----~d~~v~vwd 293 (515)
++++|.+.. ++.++.|+.+..+|.++|+.+........ .+.+ ... .+ ..+++.++. .++.|+.+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~-g~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VK-DKVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ET-TEEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-EC-CEEEEEecccccCCCCeEEEEE
Confidence 455554444 88888999999999999999877653321 1111 111 12 344443321 379999999
Q ss_pred CCCCeeeEEecCCCCC-------------------------------------e-EEEEEcCCCCEEEEEeCC-------
Q psy6127 294 LHDNKYVRYFPGHVRK-------------------------------------V-SSLNLSPVDDSFISGSYD------- 328 (515)
Q Consensus 294 ~~~~~~~~~~~~h~~~-------------------------------------v-~~l~~~~~~~~l~s~s~d------- 328 (515)
.++|+.+..+...... + ..+++.++...++.+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 9999988766432111 0 134566777778877665
Q ss_pred ---------CcEEEEEcCCCCeEEEEecCCC----------eeEEEEC-CCC---CEEEEEECCCcEEEEEeecCCCCCc
Q psy6127 329 ---------KTVRVWDLRQPNNVGMIQLSGN----------KPIAAYD-PEG---LAFAIGVNSDSIKLYDVRSYDKGPF 385 (515)
Q Consensus 329 ---------g~i~iwd~~~~~~~~~~~~~~~----------~~~~~~s-~~~---~~l~~g~~dg~i~i~d~~~~~~~~~ 385 (515)
+.|..+|.++++.+..++.... ...+... .+| ..++.++.+|.+.++|.++++..-.
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 3799999999999888754321 1112222 567 4677788999999999887652110
Q ss_pred eeee---------------------------------cCC-CCCcCeEEEEEcCCCCEEEEEE-----------------
Q psy6127 386 ASFK---------------------------------CPG-ERGCEWTGLKFSPDGKLILVST----------------- 414 (515)
Q Consensus 386 ~~~~---------------------------------~~~-~~~~~i~~l~~sp~~~~l~~~s----------------- 414 (515)
..+. ++. ........++++|+..++++..
T Consensus 349 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g 428 (599)
T 1w6s_A 349 NKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAG 428 (599)
T ss_dssp EESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred ccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCC
Confidence 0000 000 0001123567888776665532
Q ss_pred ----------------------CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q psy6127 415 ----------------------NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472 (515)
Q Consensus 415 ----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~ 472 (515)
..|.+.-||+.+++.+-....... ...-.....+.+++.++.||.++.||.++|
T Consensus 429 ~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 429 QFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA----VWGGTMATAGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp SCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC----ccCcceEecCCEEEEECCCCeEEEEECCCC
Confidence 346789999999987766643211 111223345778888999999999999999
Q ss_pred eEEEEEcCCCCCCeEEEEECCCCC-EEEEee
Q psy6127 473 YKVCVLDGDHPSAVQSLQFNPKYH-MLASAC 502 (515)
Q Consensus 473 ~~~~~~~~~h~~~V~~l~~sp~~~-~las~~ 502 (515)
+.+.+++........-+.+..+|+ ++++.+
T Consensus 505 ~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 505 DLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp CEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 999888652222222345556776 455443
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.98 E-value=3.4e-06 Score=91.38 Aligned_cols=278 Identities=12% Similarity=0.109 Sum_probs=181.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe-cCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEE
Q psy6127 224 INSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTI-NSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRY 302 (515)
Q Consensus 224 I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~ 302 (515)
|.++...+++++.+ |+.++-+..|+..+++..... ......|.++...+++. +.+++ .++.+..||..+++....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt--~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVAT--EGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEE--BSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEE--CCCCeEEEeCCCCeEEEe
Confidence 88998888886554 666545889998776543321 12345688888777664 44444 355689999888765443
Q ss_pred ecC-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEec--------CCCeeEEEECCCCCEEEEEE
Q psy6127 303 FPG-------HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQL--------SGNKPIAAYDPEGLAFAIGV 367 (515)
Q Consensus 303 ~~~-------h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~s~~~~~l~~g~ 367 (515)
... ....|.++...++|...+ |+.+ -|.+||..+++....... ...+.++..+++|.+ ..|+
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt 327 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGT 327 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEE
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEE
Confidence 221 235699999998887544 4455 588999887764433211 234788888988875 4567
Q ss_pred CCCcEEEEEeecCCCCCceeeec----CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecc-----cc
Q psy6127 368 NSDSIKLYDVRSYDKGPFASFKC----PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGV-----LN 438 (515)
Q Consensus 368 ~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~ 438 (515)
.++-|..|+...... ..... .......|.++...++|. |..|+.++-+..|+..+++........ .-
T Consensus 328 ~~~Gl~~~~~~~~~~---~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l 403 (795)
T 4a2l_A 328 YFGGLNYYHPIRNRF---KNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGI 403 (795)
T ss_dssp SSSCEEEECGGGGSS---EEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CC
T ss_pred CCCCeEEeCCCcccc---eEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCC
Confidence 777888888765321 11111 112345688999998886 445777778999998877543322111 01
Q ss_pred CCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcC---CCCCCeEEEEECCCCCEEEEeeCCEEEEcCCC
Q psy6127 439 NNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDG---DHPSAVQSLQFNPKYHMLASACSNMAFWIPTL 512 (515)
Q Consensus 439 ~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~las~~~dv~iW~~~~ 512 (515)
....|.++...++|+.|..|+.++-+..||..+++....... .....|.++...++|.+.+.+.+.+.+|+.+.
T Consensus 404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~ 480 (795)
T 4a2l_A 404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQ 480 (795)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTT
T ss_pred CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCC
Confidence 124488899888888566777777799999988765443221 13467999999999887766655577777643
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.96 E-value=1.3e-05 Score=86.87 Aligned_cols=276 Identities=12% Similarity=0.040 Sum_probs=181.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecC-------CCCceeEEEEecCCCeEEEEEeeCCCeEEEEE
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINS-------KKYGVDLIKFTHSKTTAIHASTKVDATLRYLS 293 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd 293 (515)
...|.++...++|.+.+ |+.+| |.+||..+++....... ....|.++...++|. +.+++ .++-|..++
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt--~~~Gl~~~~ 336 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGT--YFGGLNYYH 336 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEE--SSSCEEEEC
T ss_pred CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEE--CCCCeEEeC
Confidence 46799999998887544 55554 88999887765433211 235688998888875 44444 577899998
Q ss_pred CCCCeeeEEec------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe---------cCCCeeEEEECC
Q psy6127 294 LHDNKYVRYFP------GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ---------LSGNKPIAAYDP 358 (515)
Q Consensus 294 ~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~s~ 358 (515)
..++....... -....|.++...++|. |..|+.++-|..||..+++...... ....+.++..++
T Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 415 (795)
T 4a2l_A 337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE 415 (795)
T ss_dssp GGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET
T ss_pred CCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC
Confidence 76654332211 1245699999988776 5557788789999988776544321 123477888888
Q ss_pred CCCEEEEEECCCcEEEEEeecCCCCCceeeec--CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeec-
Q psy6127 359 EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKC--PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSG- 435 (515)
Q Consensus 359 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~- 435 (515)
+++.|.+|+.++-+..||..+++. ..+.. .......|.++...++|+..+ |+. +.+..||..+++.......
T Consensus 416 ~g~~lWigt~~~Gl~~~d~~~~~~---~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~ 490 (795)
T 4a2l_A 416 KKSLVYIGTHAGGLSILHRNSGQV---ENFNQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKEK 490 (795)
T ss_dssp TTTEEEEEETTTEEEEEETTTCCE---EEECTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBCT
T ss_pred CCCEEEEEeCcCceeEEeCCCCcE---EEeecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEccccc
Confidence 888567777877899999776431 11111 112345788999998887554 444 4588999887754332211
Q ss_pred --cccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcC------CCCCCeEEEEECCCCCEEEEeeCCEEE
Q psy6127 436 --VLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDG------DHPSAVQSLQFNPKYHMLASACSNMAF 507 (515)
Q Consensus 436 --~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~las~~~dv~i 507 (515)
..-....|.++...++|.+.+.. .+ -+..||..+++. .+.. .....|.++...++|.+.+++.+.+..
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~ 566 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGG-EE-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYC 566 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEE-SS-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESSCEEE
T ss_pred cccccCCceEEEEEECCCCCEEEEe-CC-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCCCcee
Confidence 01122458889899888866644 44 588999887766 3321 134579999999999877666556777
Q ss_pred EcCC
Q psy6127 508 WIPT 511 (515)
Q Consensus 508 W~~~ 511 (515)
|+..
T Consensus 567 ~d~~ 570 (795)
T 4a2l_A 567 FNEK 570 (795)
T ss_dssp EETT
T ss_pred ECCC
Confidence 7754
No 250
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=1.8e-07 Score=97.03 Aligned_cols=260 Identities=11% Similarity=0.046 Sum_probs=163.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEecCCCC----ceeE-EEEecCCCeEEEEEee----CCCeEEEEECCCCeeeEEe
Q psy6127 233 GSLLISCSDDDQIIIYDCEQGTSKNTINSKKY----GVDL-IKFTHSKTTAIHASTK----VDATLRYLSLHDNKYVRYF 303 (515)
Q Consensus 233 ~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~s~~----~d~~v~vwd~~~~~~~~~~ 303 (515)
+..++.++.|+.+..+|..+|+.+........ .+.+ ... .+..+++.+.. .++.|..+|.++|+.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 55788888899999999999999877653321 1111 111 13445544421 1789999999999988766
Q ss_pred cCCCCC-------------------------------------e-EEEEEcCCCCEEEEEeCC----------------C
Q psy6127 304 PGHVRK-------------------------------------V-SSLNLSPVDDSFISGSYD----------------K 329 (515)
Q Consensus 304 ~~h~~~-------------------------------------v-~~l~~~~~~~~l~s~s~d----------------g 329 (515)
...... + ..+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432110 0 135667766777766532 3
Q ss_pred cEEEEEcCCCCeEEEEecCC----------CeeEEEECCCCC---EEEEEECCCcEEEEEeecCCCCCceeeecCC----
Q psy6127 330 TVRVWDLRQPNNVGMIQLSG----------NKPIAAYDPEGL---AFAIGVNSDSIKLYDVRSYDKGPFASFKCPG---- 392 (515)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~~~----------~~~~~~~s~~~~---~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---- 392 (515)
.|..+|.++++.+..++... ....+...++|+ .++.++.+|.+.++|..+++..- ......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w--~~~~~~~~~w 350 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV--AEKVDPAVNV 350 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE--EEESSTTCCS
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe--eecccCCccc
Confidence 59999999999988775431 111122234674 56778889999999987764211 111000
Q ss_pred ------CC--------------------------CcCeEEEEEcCCCCEEEEEE--------------------------
Q psy6127 393 ------ER--------------------------GCEWTGLKFSPDGKLILVST-------------------------- 414 (515)
Q Consensus 393 ------~~--------------------------~~~i~~l~~sp~~~~l~~~s-------------------------- 414 (515)
.. ......++++|+...+++.+
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 00 00113578888887777654
Q ss_pred -----------CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCC
Q psy6127 415 -----------NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHP 483 (515)
Q Consensus 415 -----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 483 (515)
.++.+..||..+++.+..+..... +....+...+..++.++.||.++.||.++|+.+.++.....
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~----~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA----AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCCCC----ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence 347899999999998777654221 22233344567788899999999999999999988875222
Q ss_pred CCeEEEEECCCCCEEEE
Q psy6127 484 SAVQSLQFNPKYHMLAS 500 (515)
Q Consensus 484 ~~V~~l~~sp~~~~las 500 (515)
..-.-+.+..+|+.++.
T Consensus 507 ~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 507 GIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cEeeeEEEEECCEEEEE
Confidence 11122345567765443
No 251
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.95 E-value=3.3e-07 Score=95.07 Aligned_cols=266 Identities=15% Similarity=0.156 Sum_probs=162.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEecCCCC----cee-EEEEec---CCC-eEEEEEe----eCCCeEEEEECCCCee
Q psy6127 233 GSLLISCSDDDQIIIYDCEQGTSKNTINSKKY----GVD-LIKFTH---SKT-TAIHAST----KVDATLRYLSLHDNKY 299 (515)
Q Consensus 233 ~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~----~v~-~~~~~~---~~~-~l~~~s~----~~d~~v~vwd~~~~~~ 299 (515)
+..++.++.|+.+..+|.++|+.+........ .+. ...... +++ .+++.+. +.++.|+.+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 55788888999999999999999877654321 111 111111 123 3333321 1378999999999998
Q ss_pred eEEecCCCCCe-----------------------------------------EEEEEcCCCCEEEEEeC-----------
Q psy6127 300 VRYFPGHVRKV-----------------------------------------SSLNLSPVDDSFISGSY----------- 327 (515)
Q Consensus 300 ~~~~~~h~~~v-----------------------------------------~~l~~~~~~~~l~s~s~----------- 327 (515)
+.........+ ..+++.|+...++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 76553211000 13466677777776663
Q ss_pred ---------C----CcEEEEEcCCCCeEEEEecCCC---------eeEE-EEC-CCCC---EEEEEECCCcEEEEEeecC
Q psy6127 328 ---------D----KTVRVWDLRQPNNVGMIQLSGN---------KPIA-AYD-PEGL---AFAIGVNSDSIKLYDVRSY 380 (515)
Q Consensus 328 ---------d----g~i~iwd~~~~~~~~~~~~~~~---------~~~~-~~s-~~~~---~l~~g~~dg~i~i~d~~~~ 380 (515)
| +.|..+|.++++.+-.++.... ...+ ... .+|+ .++.++.+|.++++|.+++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 5899999999999988754211 1122 221 4674 6788889999999998775
Q ss_pred CCCCceeee---------------------------------------cCCC-CCcCeEEEEEcCCCCEEEEEE------
Q psy6127 381 DKGPFASFK---------------------------------------CPGE-RGCEWTGLKFSPDGKLILVST------ 414 (515)
Q Consensus 381 ~~~~~~~~~---------------------------------------~~~~-~~~~i~~l~~sp~~~~l~~~s------ 414 (515)
+..-..... ++.. .......++++|+...+++..
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 421000000 0000 000122467788766555433
Q ss_pred ---------------------------CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEE
Q psy6127 415 ---------------------------NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIW 467 (515)
Q Consensus 415 ---------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iw 467 (515)
.+|.+.-||+.+++.+-....... ...-.....+.+++.|+.||.++.|
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagglvf~g~~dg~l~A~ 512 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP----LWAGVLATAGNLVFTGTGDGYFKAF 512 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC----CCSCCEEETTTEEEEECTTSEEEEE
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC----CcccceEeCCCEEEEECCCCcEEEE
Confidence 257899999999998766654322 2222223357788889999999999
Q ss_pred ECCCCeEEEEEcCCCCCCeEEEEECCCCC-EEEEee
Q psy6127 468 NAERGYKVCVLDGDHPSAVQSLQFNPKYH-MLASAC 502 (515)
Q Consensus 468 d~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~las~~ 502 (515)
|.++|+.+.+++......-.-+.|..+|+ ++++.+
T Consensus 513 D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 513 DAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 99999999988752211112256667776 555443
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.93 E-value=1.2e-07 Score=86.10 Aligned_cols=199 Identities=10% Similarity=-0.004 Sum_probs=136.3
Q ss_pred eeeeEeeeeccccC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeC
Q psy6127 208 VRSYRVAKVFRENT--DKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKV 285 (515)
Q Consensus 208 ~~~~~~~~~~~~h~--~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~ 285 (515)
....+.++++ .|. .....+.|+ ++.+..+.+.+|.|+++|+++++.+..+ .. .........++++.++.++ ..
T Consensus 40 ~~~~~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~lt-w~ 114 (268)
T 3nok_A 40 RRVAHIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLT-WT 114 (268)
T ss_dssp EEEEEEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEE-SS
T ss_pred ccceEEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEE-cc
Confidence 4445666666 443 334788887 4667778888899999999999998887 32 3333333445677787776 57
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCC------CeeEEEECCC
Q psy6127 286 DATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSG------NKPIAAYDPE 359 (515)
Q Consensus 286 d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~s~~ 359 (515)
++.+.++|.++.+.+.++.-. ..-+.++ ++++.|+.+..++.|.++|..+.+.+..+.... ..+.+.|. +
T Consensus 115 ~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp SCEEEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CCEEEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 999999999999999888643 2223444 568888887778999999999999888875432 23456665 6
Q ss_pred CCEEEEEECCCcEEEEEeecCCCCCceeee-c-------CCCCCcCeEEEEEcCCCCEEEEEEC
Q psy6127 360 GLAFAIGVNSDSIKLYDVRSYDKGPFASFK-C-------PGERGCEWTGLKFSPDGKLILVSTN 415 (515)
Q Consensus 360 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-~-------~~~~~~~i~~l~~sp~~~~l~~~s~ 415 (515)
|..++....++.|.+.|.++++......+. . ........++|+++|+++.|++.+.
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 765555556888999998876522111111 0 1123346789999998877776654
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.89 E-value=5.1e-07 Score=81.32 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=136.8
Q ss_pred eeeEEecCCC--CCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEE-ECCCcE
Q psy6127 298 KYVRYFPGHV--RKVSSLNLSPVDDSFISGSYD--KTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIG-VNSDSI 372 (515)
Q Consensus 298 ~~~~~~~~h~--~~v~~l~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i 372 (515)
+.+..+ .|. .....+.|++ +.++.+.+.+ ..|+.+|+++++.+.............+.+.++.+... -.++.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence 345555 354 4567899986 5566666665 48999999999999998777655444344445555544 468899
Q ss_pred EEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecccc--CCCCCEEEEEec
Q psy6127 373 KLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLN--NNASPLEATFTP 450 (515)
Q Consensus 373 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~i~~~~~sp 450 (515)
.+||..+.+ ....+.... .. ..++ +++..|+++..++.|.++|..+.+.+..+..... ....++.+.+.
T Consensus 88 ~v~D~~tl~--~~~ti~~~~---~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 88 FVYDLATLT--PRARFRYPG---EG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp EEEETTTTE--EEEEEECSS---CC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEECCcCc--EEEEEeCCC---Cc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence 999998754 222222221 12 2444 5677777777788999999999998888765332 11235566665
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEcCC------------CCCCeEEEEECCCCCEEEEeeCC-EEEEcC
Q psy6127 451 DSQFVASGSTDGQVHIWNAERGYKVCVLDGD------------HPSAVQSLQFNPKYHMLASACSN-MAFWIP 510 (515)
Q Consensus 451 ~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------------h~~~V~~l~~sp~~~~las~~~d-v~iW~~ 510 (515)
+|+..+....+..|.+.|..+|+.+..+... ..+..+.++++|++..|..++.. =++|.+
T Consensus 159 ~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v 231 (243)
T 3mbr_X 159 NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEI 231 (243)
T ss_dssp TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEE
Confidence 6665555556789999999999999887631 12356899999988877777755 344443
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.89 E-value=1.1e-07 Score=86.46 Aligned_cols=200 Identities=15% Similarity=0.097 Sum_probs=135.2
Q ss_pred eeeEEecCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeE--EEECCCCCEEEEEECCCcEE
Q psy6127 298 KYVRYFPGHVR--KVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPI--AAYDPEGLAFAIGVNSDSIK 373 (515)
Q Consensus 298 ~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~s~~~~~l~~g~~dg~i~ 373 (515)
+.+.++. |.. ....+.|+. +.++.+.+.+|.|+.+|+++++.+..+ ....... +++.. ++..+..-.++.+.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred EEEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEE
Confidence 3445553 443 347888873 567778888899999999999998888 6554444 45443 23344444689999
Q ss_pred EEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecccc--CCCCCEEEEEecC
Q psy6127 374 LYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLN--NNASPLEATFTPD 451 (515)
Q Consensus 374 i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~i~~~~~sp~ 451 (515)
+||..+.+. ...+... ... ..++ ++++.|+.+..++.|.++|..+.+.+..+..... ....++.+.|. +
T Consensus 120 V~D~~Tl~~--~~ti~~~-~eG---wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 120 TWSGMPPQR--ERTTRYS-GEG---WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EEETTTTEE--EEEEECS-SCC---CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEECCcCcE--EEEEeCC-Cce---eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 999987542 2223221 111 1344 5788888888889999999999998888765332 12235667777 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcCC------------CCCCeEEEEECCCCCEEEEeeCC-EEEEcC
Q psy6127 452 SQFVASGSTDGQVHIWNAERGYKVCVLDGD------------HPSAVQSLQFNPKYHMLASACSN-MAFWIP 510 (515)
Q Consensus 452 g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------------h~~~V~~l~~sp~~~~las~~~d-v~iW~~ 510 (515)
|+..+....++.|.+.|..+|+.+..+.-. -.+..+.+||+|+++.|..++.. =++|.+
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev 262 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEV 262 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEE
Confidence 765555556889999999999999887641 12356899999987766666654 344443
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.87 E-value=1.8e-07 Score=98.94 Aligned_cols=270 Identities=13% Similarity=0.106 Sum_probs=168.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEecCCCCce-----------eEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeE
Q psy6127 233 GSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGV-----------DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVR 301 (515)
Q Consensus 233 ~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~ 301 (515)
+..++.++.++.|.-+|..+|+.+..+....... ..+++ .+..+++.+ .|+.+..+|..+|+.+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~--~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGT--LDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEEC--TTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEc--CCCEEEEEECCCCCEee
Confidence 5577778889999999999999988876432210 11222 244555543 69999999999999887
Q ss_pred EecCCC----CCeEE-EEEcCCCCEEEEEeC------CCcEEEEEcCCCCeEEEEecCC--C------------------
Q psy6127 302 YFPGHV----RKVSS-LNLSPVDDSFISGSY------DKTVRVWDLRQPNNVGMIQLSG--N------------------ 350 (515)
Q Consensus 302 ~~~~h~----~~v~~-l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~--~------------------ 350 (515)
.+.... ..+.+ ..+. +..++.+.. +|.|..+|.++|+.+..+.... +
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred eeccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 765321 11111 1111 345555543 5899999999999988775310 0
Q ss_pred ------------eeEEEECCCCCEEEEEECCCc-------------------EEEEEeecCCCCCceeeecCCCC-----
Q psy6127 351 ------------KPIAAYDPEGLAFAIGVNSDS-------------------IKLYDVRSYDKGPFASFKCPGER----- 394 (515)
Q Consensus 351 ------------~~~~~~s~~~~~l~~g~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~~----- 394 (515)
...++++|+...++.++.++. |..+|.++++..- .... ..+
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W--~~~~-~~~~~wd~ 296 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAW--HYQV-TPGDSWDF 296 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE--EEES-STTCCSCC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceee--Eeec-CCCccccc
Confidence 013688888889888877663 8888888765211 1111 111
Q ss_pred --CcCeEEEEEcCCCC---EEEEEECCCcEEEEECCCCceeEEeecccc---------CC--------------------
Q psy6127 395 --GCEWTGLKFSPDGK---LILVSTNGSIIRLFDAFNGNCVQSLSGVLN---------NN-------------------- 440 (515)
Q Consensus 395 --~~~i~~l~~sp~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~---------~~-------------------- 440 (515)
..+.....+..+|+ .++.++.+|.++++|..+|+.+........ ..
T Consensus 297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~ 376 (668)
T 1kv9_A 297 TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPS 376 (668)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSC
T ss_pred cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCC
Confidence 12222223334665 688899999999999999998744322110 00
Q ss_pred ----CCCEEEEEecCCCEEEEEe------------------------------------CCCcEEEEECCCCeEEEEEcC
Q psy6127 441 ----ASPLEATFTPDSQFVASGS------------------------------------TDGQVHIWNAERGYKVCVLDG 480 (515)
Q Consensus 441 ----~~i~~~~~sp~g~~l~sgs------------------------------------~dg~I~iwd~~~~~~~~~~~~ 480 (515)
..-..++++|+..+++... .+|.|..||..+|+.+-+.+.
T Consensus 377 ~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~ 456 (668)
T 1kv9_A 377 PFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY 456 (668)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE
T ss_pred CccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC
Confidence 0011267888877666421 237899999999999877763
Q ss_pred CCCCCeEEEEECCCCCEEEEeeCC--EEEEcCCCC
Q psy6127 481 DHPSAVQSLQFNPKYHMLASACSN--MAFWIPTLS 513 (515)
Q Consensus 481 ~h~~~V~~l~~sp~~~~las~~~d--v~iW~~~~~ 513 (515)
..+.....+...+.+++.++.+ ++.||.+..
T Consensus 457 --~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 457 --PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp --SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred --CCCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 2333333344456666666644 777877654
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.87 E-value=6.3e-07 Score=80.70 Aligned_cols=198 Identities=16% Similarity=0.091 Sum_probs=133.9
Q ss_pred eeEeeeeccccC--CcEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeC
Q psy6127 210 SYRVAKVFRENT--DKINSLDYSSDGSLLISCSDD--DQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKV 285 (515)
Q Consensus 210 ~~~~~~~~~~h~--~~I~~l~~spd~~~lasgs~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~ 285 (515)
.++.++++ .|. .....+.|++ +.+..+.+.+ ..|+.+|+++++.+..+..... .......+.++.++.++ ..
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~lt-w~ 83 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLT-WR 83 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEE-SS
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEE-ee
Confidence 35566666 454 4466899986 5566666665 4899999999999888765432 23333344567777776 57
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC------CCeeEEEECCC
Q psy6127 286 DATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS------GNKPIAAYDPE 359 (515)
Q Consensus 286 d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~s~~ 359 (515)
++.+.++|.++.+.+.++.... .-+.++ ++++.|+.+..++.|.++|..+.+.+..+... ...+.+.+. +
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~ 159 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N 159 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CCEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C
Confidence 9999999999999998886432 224444 56777777777899999999999988887543 123445554 6
Q ss_pred CCEEEEEECCCcEEEEEeecCCCCCceeeecC--------CCCCcCeEEEEEcCCCCEEEEEEC
Q psy6127 360 GLAFAIGVNSDSIKLYDVRSYDKGPFASFKCP--------GERGCEWTGLKFSPDGKLILVSTN 415 (515)
Q Consensus 360 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~~i~~l~~sp~~~~l~~~s~ 415 (515)
|+.++....+..|.+.|.++++......+... .......++|+++|+++.|++.+.
T Consensus 160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 66555554678889988887652211111100 122346789999999888877764
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.84 E-value=7.2e-06 Score=79.40 Aligned_cols=246 Identities=10% Similarity=0.029 Sum_probs=154.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeee
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYV 300 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~ 300 (515)
.+..+|.+..+++ +|+.+. ...|+..++........+.. ...+..++|.+.+..++.+- ...+.|..+++..+...
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D-~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSD-VTLDRILRANLNGSNVE 108 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCE
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEe-ccCCceEEEecCCCCce
Confidence 3445666666644 444443 35688888875544443433 34588999999888888775 35789999998876544
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCeEEEEec-CCCeeEEEECCCCCEEEEEE-CC-CcEEEEE
Q psy6127 301 RYFPGHVRKVSSLNLSPVDDSF-ISGSYDKTVRVWDLRQPNNVGMIQL-SGNKPIAAYDPEGLAFAIGV-NS-DSIKLYD 376 (515)
Q Consensus 301 ~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~-~d-g~i~i~d 376 (515)
............+++.+.+..| ++-...+.|.+.++........... -.....++++|.+..+.... .. +.|..++
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 4443333456789999866555 4445567899999876554433322 24478899999766655554 33 6787777
Q ss_pred eecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEE
Q psy6127 377 VRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFV 455 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 455 (515)
+.... ..............++++|++..|+.+. ..+.|..+|+........+... ...+..+++. ++.+.
T Consensus 189 ~dG~~-----~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~---~~~P~giav~-~~~ly 259 (349)
T 3v64_C 189 MDGSG-----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG---LPHPFAITVF-EDSLY 259 (349)
T ss_dssp TTSCS-----CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---CSSEEEEEEE-TTEEE
T ss_pred CCCCC-----cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC---CCCceEEEEE-CCEEE
Confidence 76432 1111112233567999999877777665 4578999997644332222222 2236788883 45555
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEc
Q psy6127 456 ASGSTDGQVHIWNAERGYKVCVLD 479 (515)
Q Consensus 456 ~sgs~dg~I~iwd~~~~~~~~~~~ 479 (515)
++-...+.|..++..+|+....+.
T Consensus 260 ~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 260 WTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EecCCCCeEEEEEccCCCccEEec
Confidence 555567889888876776555554
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.84 E-value=8.4e-07 Score=91.91 Aligned_cols=270 Identities=14% Similarity=0.067 Sum_probs=162.3
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCeeeeEecCCCCc-----------eeEEEEecCCCeEEEEEeeCCCeEEEEECCCCee
Q psy6127 233 GSLLISCSD-DDQIIIYDC-EQGTSKNTINSKKYG-----------VDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKY 299 (515)
Q Consensus 233 ~~~lasgs~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~ 299 (515)
+..++.++. ++.|.-+|. .+|+.+..+...... ...++. .+..+++.+ .|+.+..+|..+|+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~--~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQ--ANGHLLALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC--TTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEe--CCCEEEEEECCCCCE
Confidence 446667777 899999999 899998877543210 011222 245555554 689999999999998
Q ss_pred eEEecCCC--C--CeEE-EEEcCCCCEEEEEeC------CCcEEEEEcCCCCeEEEEecCCCe-----------------
Q psy6127 300 VRYFPGHV--R--KVSS-LNLSPVDDSFISGSY------DKTVRVWDLRQPNNVGMIQLSGNK----------------- 351 (515)
Q Consensus 300 ~~~~~~h~--~--~v~~-l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 351 (515)
+....... . .+.+ .... +..++.++. ++.|..+|.++++.+..+......
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 87654211 0 1111 1111 345666654 799999999999998877543221
Q ss_pred ----------------------eEEEECCCCCEEEEEECC----------------CcEEEEEeecCCCCCceeeecCC-
Q psy6127 352 ----------------------PIAAYDPEGLAFAIGVNS----------------DSIKLYDVRSYDKGPFASFKCPG- 392 (515)
Q Consensus 352 ----------------------~~~~~s~~~~~l~~g~~d----------------g~i~i~d~~~~~~~~~~~~~~~~- 392 (515)
..++++++...+..++.+ +.|..+|.++++.. -......
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~--W~~~~~~~ 293 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK--WGYQKTPH 293 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE--EEEESSTT
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEE--EEecCCCC
Confidence 125667777777776532 25888888876521 1111111
Q ss_pred ------CCCcCeEEEEEcCCCC---EEEEEECCCcEEEEECCCCceeEEeeccccC----------CCC-----------
Q psy6127 393 ------ERGCEWTGLKFSPDGK---LILVSTNGSIIRLFDAFNGNCVQSLSGVLNN----------NAS----------- 442 (515)
Q Consensus 393 ------~~~~~i~~l~~sp~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~----------- 442 (515)
....++ -+...++|+ .++.++.+|.++++|..+|+.+......... ..+
T Consensus 294 d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 294 DEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp CSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred cccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCC
Confidence 111222 223334674 5677888999999999999887665432100 000
Q ss_pred ---------------CEEEEEecCCCEEEEEe-------------------------------------CCCcEEEEECC
Q psy6127 443 ---------------PLEATFTPDSQFVASGS-------------------------------------TDGQVHIWNAE 470 (515)
Q Consensus 443 ---------------i~~~~~sp~g~~l~sgs-------------------------------------~dg~I~iwd~~ 470 (515)
-..++++|+..++++.. .+|.|..||..
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~ 452 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT 452 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC
Confidence 02467888888777653 34789999999
Q ss_pred CCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeC--CEEEEcCCCC
Q psy6127 471 RGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS--NMAFWIPTLS 513 (515)
Q Consensus 471 ~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~--dv~iW~~~~~ 513 (515)
+|+.+.+... ...+........+..+..++. .++.||.+..
T Consensus 453 tG~~~W~~~~--~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 453 TGKAKWTKWE--KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp TCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CCCEEEEecC--CCCccceeEEECCCEEEEEcCCCeEEEEECCCC
Confidence 9998887753 222222222223344444553 3666666543
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.83 E-value=6.8e-06 Score=78.01 Aligned_cols=241 Identities=12% Similarity=0.094 Sum_probs=146.1
Q ss_pred eeEeeeeccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCC-Ce
Q psy6127 210 SYRVAKVFRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVD-AT 288 (515)
Q Consensus 210 ~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d-~~ 288 (515)
..+.+..+..+ .....++|+|+|+++++-..++.|..||... +....+.. ......+++.++++ ++++....+ ..
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCc-EEEEeccCCcce
Confidence 34555555443 5678899999999777766789999999874 33333332 35688999999998 444442223 35
Q ss_pred EEEEECCCCeeeEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCe-EEEEe-------c-C--CCeeEEEE
Q psy6127 289 LRYLSLHDNKYVRYFP-GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNN-VGMIQ-------L-S--GNKPIAAY 356 (515)
Q Consensus 289 v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~-------~-~--~~~~~~~~ 356 (515)
|..+|..+++...... ........++..+++..+++-..++.|..+|..+++. +.... . . .....+
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 7777877776543222 1223345556555554455444688899999876532 11110 0 1 113334
Q ss_pred CCCCCEEEEEE-CCCcEEEEEeec-CCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEee
Q psy6127 357 DPEGLAFAIGV-NSDSIKLYDVRS-YDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLS 434 (515)
Q Consensus 357 s~~~~~l~~g~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 434 (515)
+|+++.++++. ..+.|..|++.. +.......+... .....++++++|++.++....+.|.++|.. ++......
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~ 249 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQ 249 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEee
Confidence 78887665554 567899999875 221111111111 123479999999877766677899999964 65432211
Q ss_pred ccccCCCCCEEEEEe---cCCCEEEEEeCCC
Q psy6127 435 GVLNNNASPLEATFT---PDSQFVASGSTDG 462 (515)
Q Consensus 435 ~~~~~~~~i~~~~~s---p~g~~l~sgs~dg 462 (515)
.......+++++|. |+++.|+.++..+
T Consensus 250 -~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 250 -AEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -GGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred -cccccCCceEEEEecccCCCCEEEEECCCC
Confidence 11122347899998 8888777766544
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.82 E-value=1.9e-07 Score=98.76 Aligned_cols=275 Identities=11% Similarity=0.053 Sum_probs=158.5
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEECCCCeee--eEecC-CCCceeEEEEecCCCeEEEEEeeCCCeEE
Q psy6127 226 SLDYSS-DGSLLISCSDDD-----------QIIIYDCEQGTSK--NTINS-KKYGVDLIKFTHSKTTAIHASTKVDATLR 290 (515)
Q Consensus 226 ~l~~sp-d~~~lasgs~dg-----------~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~s~~~d~~v~ 290 (515)
.+++.| +++.++.|+.++ .+.+||..+++.. ..+.. +.....++++..++..+ +.+|..+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~ly-v~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIV-VTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEE-EECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEE-EeCCCCCCceE
Confidence 556777 888999887643 6889999877543 22322 22334456777777644 44444567899
Q ss_pred EEECCCCeeeEEecCCC-CCeEEEEEcCCCCEEEEEe-CC-----CcEEEEEcCCCCeEEEE-----ecCCCeeEEEECC
Q psy6127 291 YLSLHDNKYVRYFPGHV-RKVSSLNLSPVDDSFISGS-YD-----KTVRVWDLRQPNNVGMI-----QLSGNKPIAAYDP 358 (515)
Q Consensus 291 vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s-~d-----g~i~iwd~~~~~~~~~~-----~~~~~~~~~~~s~ 358 (515)
+||..+++-...-..+. ..-.+++..++++.++.|+ .+ ..+.+||..+.+....- ..........+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 99998876543322222 1223456667899999988 44 56999999887654431 1111001122334
Q ss_pred CCCEEEEEECCC---------cEEEEEeecCCCCCceeeecCCC------CCcCeEEEEEcC-CCCEEEEEECCC-----
Q psy6127 359 EGLAFAIGVNSD---------SIKLYDVRSYDKGPFASFKCPGE------RGCEWTGLKFSP-DGKLILVSTNGS----- 417 (515)
Q Consensus 359 ~~~~l~~g~~dg---------~i~i~d~~~~~~~~~~~~~~~~~------~~~~i~~l~~sp-~~~~l~~~s~dg----- 417 (515)
++..++.|+.+| .+..||..+.... ........ ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~--~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~ 426 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV--KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE--EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCccee--ecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence 566666665544 4677877654311 11110000 111223555544 677777777432
Q ss_pred ------cEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC-----------CcEEEEECCCCeEEEEEcC
Q psy6127 418 ------IIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD-----------GQVHIWNAERGYKVCVLDG 480 (515)
Q Consensus 418 ------~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~ 480 (515)
.+.+||..+................-.+++..|+|++++.|+.+ ..+.+||..+++....-..
T Consensus 427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~ 506 (656)
T 1k3i_A 427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 506 (656)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC
Confidence 57788887766543320111111113456677899999999854 4689999988764432111
Q ss_pred C-CCCCeEEEEECCCCCEEEEeeC
Q psy6127 481 D-HPSAVQSLQFNPKYHMLASACS 503 (515)
Q Consensus 481 ~-h~~~V~~l~~sp~~~~las~~~ 503 (515)
. .........+.|++++++.|++
T Consensus 507 ~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 507 SIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCccccccHhhcCCCcEEEecCCC
Confidence 1 1222345567899999999884
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.78 E-value=3.6e-06 Score=87.25 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=123.8
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCeeeeEecCCCCc-----------eeEEEEecCCCe----EEEEEeeCCCeEEEEECC
Q psy6127 233 GSLLISCSD-DDQIIIYDC-EQGTSKNTINSKKYG-----------VDLIKFTHSKTT----AIHASTKVDATLRYLSLH 295 (515)
Q Consensus 233 ~~~lasgs~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~s~~~d~~v~vwd~~ 295 (515)
+..++.++. ++.|.-+|. .+|+.+..+...... ...+++.|.+.. +++.+ .|+.+..+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t--~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ--LDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC--TTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc--CCCEEEEEECC
Confidence 456777777 889999999 899998877643221 123455444444 65554 69999999999
Q ss_pred CCeeeEEecCCC----CCeEE-EEEcCCCCEEEEEe------CCCcEEEEEcCCCCeEEEEecCCCe-------------
Q psy6127 296 DNKYVRYFPGHV----RKVSS-LNLSPVDDSFISGS------YDKTVRVWDLRQPNNVGMIQLSGNK------------- 351 (515)
Q Consensus 296 ~~~~~~~~~~h~----~~v~~-l~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~------------- 351 (515)
+|+.+....... ..+.+ ..+. +..++.++ .++.|+.+|.++|+.+-.+......
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CCCEEEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 999886654221 01111 1111 33455554 3899999999999998877543321
Q ss_pred --------------------------eEEEECCCCCEEEEEECCC----------------cEEEEEeecCCCCCceeee
Q psy6127 352 --------------------------PIAAYDPEGLAFAIGVNSD----------------SIKLYDVRSYDKGPFASFK 389 (515)
Q Consensus 352 --------------------------~~~~~s~~~~~l~~g~~dg----------------~i~i~d~~~~~~~~~~~~~ 389 (515)
...+++++...++.++.++ .|..+|.++++.. -...
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~--W~~q 295 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK--FGYQ 295 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE--EEEE
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee--eEee
Confidence 1346677778888877653 7888888876521 1111
Q ss_pred cCCC-------CCcCeEEEEEc-CCC---CEEEEEECCCcEEEEECCCCceeEEee
Q psy6127 390 CPGE-------RGCEWTGLKFS-PDG---KLILVSTNGSIIRLFDAFNGNCVQSLS 434 (515)
Q Consensus 390 ~~~~-------~~~~i~~l~~s-p~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~ 434 (515)
...+ ...++ -+... .+| +.++.++.+|.++++|..+|+.+....
T Consensus 296 ~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 296 KTPHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp SSTTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 1111 11222 12222 567 467778899999999999999876654
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.78 E-value=1.2e-05 Score=76.21 Aligned_cols=236 Identities=9% Similarity=-0.024 Sum_probs=141.5
Q ss_pred eeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCC--cE
Q psy6127 254 TSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDK--TV 331 (515)
Q Consensus 254 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--~i 331 (515)
+.+..+... .....++|.+++. ++++. ..++.|..||.... ....+. ....+..+++.++|+++++..... .|
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~-lyv~d-~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGT-IFVTN-HEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSC-EEEEE-TTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred eEeEeCCCC-CCcceEEECCCCC-EEEEe-CCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence 344445433 4577899999886 44443 35789999998754 333332 235688999999999666554322 47
Q ss_pred EEEEcCCCCeEEEEecC--CCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCce---eee--cCCCCCcCeEEEEEc
Q psy6127 332 RVWDLRQPNNVGMIQLS--GNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFA---SFK--CPGERGCEWTGLKFS 404 (515)
Q Consensus 332 ~iwd~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~~--~~~~~~~~i~~l~~s 404 (515)
..+|..+++........ .....++..+++..+++-..++.|..+|.......... ... ...........+ +
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 77787787765443322 22334555555554554445788888886532100000 000 011111234455 8
Q ss_pred CCCCEEEEEE-CCCcEEEEECCC-Cce--eEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE--EE
Q psy6127 405 PDGKLILVST-NGSIIRLFDAFN-GNC--VQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVC--VL 478 (515)
Q Consensus 405 p~~~~l~~~s-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~--~~ 478 (515)
|++++|+++. ..+.|..|++.. ++. ...+... .....++++++|+++++....+.|.++|.. |+... .+
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 8888776665 567899999864 321 1122111 225679999999887777678899999975 66533 23
Q ss_pred cCCCCCCeEEEEEC---CCCCEEEEee
Q psy6127 479 DGDHPSAVQSLQFN---PKYHMLASAC 502 (515)
Q Consensus 479 ~~~h~~~V~~l~~s---p~~~~las~~ 502 (515)
.. .....++++|. |++..|..++
T Consensus 251 ~~-~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 251 EQ-GVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp GG-TCTTEEEEEECCSTTTTTEEEEEE
T ss_pred cc-ccCCceEEEEecccCCCCEEEEEC
Confidence 32 33568999999 8876555543
No 263
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.76 E-value=3.5e-05 Score=73.39 Aligned_cols=235 Identities=12% Similarity=0.044 Sum_probs=147.3
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC----CeeeEEecCCCCCe
Q psy6127 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD----NKYVRYFPGHVRKV 310 (515)
Q Consensus 235 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~----~~~~~~~~~h~~~v 310 (515)
+|+.+.. ..|+..|+.+.+....+.. ......++|.+.+..++.+. ...+.|..+++.. ......+...-...
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D-~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEE-TTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEE-CCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 3444443 5689999987765554443 45678999999888888776 3578999999876 22222233233456
Q ss_pred EEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEECC--CcEEEEEeecCCCCCce
Q psy6127 311 SSLNLSPVDDSFI-SGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVNS--DSIKLYDVRSYDKGPFA 386 (515)
Q Consensus 311 ~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~ 386 (515)
..+++.+.+..|+ +-...+.|.+.|+.......... .......++++|.+..+...... +.|..+++.... ..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~ 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eE
Confidence 7899987665554 44567899999987655443333 23457889999977666555443 678777765422 11
Q ss_pred eeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEE
Q psy6127 387 SFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVH 465 (515)
Q Consensus 387 ~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~ 465 (515)
.+. .........++++|++..|+.+. ..+.|..+|+... ..+.+.........+..+++. .+.++++-...+.|.
T Consensus 157 ~~~--~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 157 SLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp EEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEE--ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 111 11234567999999887777665 4568999998643 333332211112236778885 355555555678899
Q ss_pred EEECCCCeEEEEEc
Q psy6127 466 IWNAERGYKVCVLD 479 (515)
Q Consensus 466 iwd~~~~~~~~~~~ 479 (515)
.++..+|+.+..+.
T Consensus 233 ~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 233 SANRLTGSDVNLLA 246 (316)
T ss_dssp EEETTTCCCCEEEE
T ss_pred EEeCCCCcceEEEe
Confidence 99987776555543
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.75 E-value=1.2e-05 Score=78.92 Aligned_cols=245 Identities=10% Similarity=0.035 Sum_probs=154.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEE
Q psy6127 223 KINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRY 302 (515)
Q Consensus 223 ~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~ 302 (515)
.-.|.+..++ .+|+.+. ...|+..++........+. .......++|.+.+..++.+. ...+.|..+++..+.....
T Consensus 78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D-~~~~~I~r~~~~g~~~~~~ 153 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSD-VTLDRILRANLNGSNVEEV 153 (386)
T ss_dssp SSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCCEEEE
T ss_pred CCeECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEe-CCCCcEEEEecCCCCcEEE
Confidence 3446565553 3454443 4678888887655444444 335688999999888888775 3578999999887654444
Q ss_pred ecCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCeEEEEecC-CCeeEEEECCCCCEEEEEEC-C-CcEEEEEee
Q psy6127 303 FPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLRQPNNVGMIQLS-GNKPIAAYDPEGLAFAIGVN-S-DSIKLYDVR 378 (515)
Q Consensus 303 ~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~~-d-g~i~i~d~~ 378 (515)
+.........+++.+.+..|+ +-...+.|.+.++........+... .....++++|.+..|..... . +.|..+++.
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 443334567789988666554 4455678888888765544333322 44788999997776666543 3 567777765
Q ss_pred cCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEE
Q psy6127 379 SYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVAS 457 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s 457 (515)
.... ..+. .........++++|++..|+.+. ..+.|..+|+........+... ...+..+++ ..+.++++
T Consensus 234 G~~~---~~~~--~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~---~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 234 GSGR---RIIA--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG---LPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp SCSC---EEEE--CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS---CSSEEEEEE-ETTEEEEE
T ss_pred CCCc---EEEE--ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC---CCCceEEEE-ECCEEEEe
Confidence 4321 1111 12233467999998777777665 4577999997644332222222 223678888 34555556
Q ss_pred EeCCCcEEEEECCCCeEEEEEcC
Q psy6127 458 GSTDGQVHIWNAERGYKVCVLDG 480 (515)
Q Consensus 458 gs~dg~I~iwd~~~~~~~~~~~~ 480 (515)
-...+.|..++..+|+....+..
T Consensus 305 d~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 305 DWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp ETTTTEEEEEETTTCCSCEEEEC
T ss_pred eCCCCeEEEEECCCCcceEEEcc
Confidence 66778899999777766655543
No 265
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.71 E-value=2.4e-05 Score=71.45 Aligned_cols=209 Identities=12% Similarity=0.156 Sum_probs=138.5
Q ss_pred EecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy6127 258 TINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFP-GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDL 336 (515)
Q Consensus 258 ~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 336 (515)
.+.+-...+..++|.|+++.+++++ ..++.|...|.. ++.++.+. +-......+++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~-d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTI-NKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEE-ETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEE-CCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4556667899999999988888877 468999999998 88777763 22356888999988877676667788999988
Q ss_pred CCCCe---EEEEec-------CCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCC-Cceeeec----CCCCCcCeEEE
Q psy6127 337 RQPNN---VGMIQL-------SGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKG-PFASFKC----PGERGCEWTGL 401 (515)
Q Consensus 337 ~~~~~---~~~~~~-------~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~----~~~~~~~i~~l 401 (515)
..... ...... ......++++|.++.|.++.......+|.++..... ....... .......+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76543 222221 122478999999988888877777777777621110 1111110 11223356799
Q ss_pred EEcCCCCE-EEEEECCCcEEEEECCCCceeEEeecccc------CCCCCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 402 KFSPDGKL-ILVSTNGSIIRLFDAFNGNCVQSLSGVLN------NNASPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 402 ~~sp~~~~-l~~~s~dg~i~iwd~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
+++|.... ++....++.+..+|.. |+.+..+.-..+ .....-.++|.++|+ |+..++.+.++.+.-.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 99996554 4455567788889854 666555543321 122468999999998 4445777877777643
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=2.4e-05 Score=84.59 Aligned_cols=281 Identities=8% Similarity=-0.059 Sum_probs=175.6
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEec---------CCCCceeEEEEecCCCeEEEEEeeCCCeEE
Q psy6127 220 NTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTIN---------SKKYGVDLIKFTHSKTTAIHASTKVDATLR 290 (515)
Q Consensus 220 h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~ 290 (515)
....|.++...++|. |..|+.++-|..++..++....... .....|.++...+++. +.+++ .++-+.
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt--~~~Gl~ 386 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGT--DGGGIN 386 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEE--BSSCEE
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEe--CCCcEE
Confidence 356799999998886 5567766678889877554322211 1235688888877765 44454 467789
Q ss_pred EEECCCCeeeEEe---cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe---cCCCeeEEEECCCCCEEE
Q psy6127 291 YLSLHDNKYVRYF---PGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ---LSGNKPIAAYDPEGLAFA 364 (515)
Q Consensus 291 vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~ 364 (515)
.+|..++...... ......|.++...+++.+ ..|+.++-+..+|.++++...... ....+.++..++++.+.+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp EEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred EEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE
Confidence 9998765433211 123467999998887764 446777778999987765433221 124577888888776444
Q ss_pred EEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeec-cccCCCCC
Q psy6127 365 IGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSG-VLNNNASP 443 (515)
Q Consensus 365 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~i 443 (515)
|+. +-+..||..+..................|.++...++|... .|+.++-+..||..+++.. .+.. ..-....|
T Consensus 466 -gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i 541 (781)
T 3v9f_A 466 -GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTI 541 (781)
T ss_dssp -EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCEEE-EECTTTTCSCSCE
T ss_pred -EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeEE-EccCCCCCCCCee
Confidence 555 56888887764322111100001124578899999988755 4555445888987766533 3321 11123347
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcC---CCCCCeEEEEECCCCCEEEEeeCCEEEEcCC
Q psy6127 444 LEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDG---DHPSAVQSLQFNPKYHMLASACSNMAFWIPT 511 (515)
Q Consensus 444 ~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~las~~~dv~iW~~~ 511 (515)
.++...++|.+.++ +.+|.+..||..+++... +.. -....|.++...++|.+-+++...+..++.+
T Consensus 542 ~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~ 610 (781)
T 3v9f_A 542 NQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITS 610 (781)
T ss_dssp EEEEECTTSCEEEE-ETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETT
T ss_pred EEEEECCCCCEEEE-ECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECC
Confidence 88888888886554 457755889987765332 221 1234688999999998887776557666654
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.68 E-value=9.9e-05 Score=72.77 Aligned_cols=246 Identities=12% Similarity=0.044 Sum_probs=154.3
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCC----eeeEEecCCCCC
Q psy6127 234 SLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDN----KYVRYFPGHVRK 309 (515)
Q Consensus 234 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~----~~~~~~~~h~~~ 309 (515)
.+|+.+. ...|+..++........+. ....+..++|.+.+..++.+. ...+.|+.+++... ............
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD-~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEE-TTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEe-cCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 3555554 4689999988655444443 446788999999888888776 35788999998752 223333334456
Q ss_pred eEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEEC--CCcEEEEEeecCCCCCc
Q psy6127 310 VSSLNLSPVDDSFI-SGSYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVN--SDSIKLYDVRSYDKGPF 385 (515)
Q Consensus 310 v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~--dg~i~i~d~~~~~~~~~ 385 (515)
...+++.+.+..|+ +-...+.|.+.+++.......+. .......++++|.+..|+.... .+.|...++.....
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~--- 237 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--- 237 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---
Confidence 78999998555444 44567889999988766544443 2334788999997776666553 36788887764321
Q ss_pred eeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcE
Q psy6127 386 ASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQV 464 (515)
Q Consensus 386 ~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I 464 (515)
..+. ...-.....++++|++..|+.+. ..+.|..+|+..... ..+............+++. .+.++++-...+.|
T Consensus 238 ~~~~--~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 238 YSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp EEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred EEEE--ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 1111 12224567999999888887775 457899999864433 3332211112225677773 34455555667889
Q ss_pred EEEECCCCeEEEEEcCCCCCCeEEEE
Q psy6127 465 HIWNAERGYKVCVLDGDHPSAVQSLQ 490 (515)
Q Consensus 465 ~iwd~~~~~~~~~~~~~h~~~V~~l~ 490 (515)
..+|..+|+.+..+.. ......++.
T Consensus 314 ~~~~~~~G~~~~~i~~-~~~~p~~i~ 338 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAE-NLLSPEDMV 338 (400)
T ss_dssp EEEESSSCCCCEEEEC-SCSCEEEEE
T ss_pred EEEEcCCCCceEEEec-CCCCCceEE
Confidence 9999878876666553 333344443
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.66 E-value=5.4e-06 Score=79.29 Aligned_cols=234 Identities=11% Similarity=0.068 Sum_probs=141.0
Q ss_pred CceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEe-cC------------------CCCCeEEEEEcCCCCEEEE
Q psy6127 264 YGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYF-PG------------------HVRKVSSLNLSPVDDSFIS 324 (515)
Q Consensus 264 ~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~-~~------------------h~~~v~~l~~~~~~~~l~s 324 (515)
....+++|.+++..+++.. .++.|..||..+++..... .. ....+..+++.+++..|+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSV--QDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEEC--TTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCCCEEEEEc--CCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 3456788888877566543 6889999998765433211 00 1135789999983344555
Q ss_pred EeCCCcEEEEEcCCCCeEEEEec-----CCCeeEEEECC-CCCEEEEEEC-----------------CCcEEEEEeecCC
Q psy6127 325 GSYDKTVRVWDLRQPNNVGMIQL-----SGNKPIAAYDP-EGLAFAIGVN-----------------SDSIKLYDVRSYD 381 (515)
Q Consensus 325 ~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~s~-~~~~l~~g~~-----------------dg~i~i~d~~~~~ 381 (515)
+...+.+..+|..+++....... ......+++++ +|+..++-.. ++.+..||..++.
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 65556688888776543222111 12357799999 9987766432 2567777765432
Q ss_pred CCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCc--eeEEeeccccCCCCCEEEEEecCCCEEEEE
Q psy6127 382 KGPFASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGN--CVQSLSGVLNNNASPLEATFTPDSQFVASG 458 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~--~~~~~~~~~~~~~~i~~~~~sp~g~~l~sg 458 (515)
. ..... .......++++|++++|+++. ..+.|..|++.... ....+.. ... ...++++++|++.++.
T Consensus 177 ~---~~~~~---~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 177 T---TLLLK---ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp E---EEEEE---EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEE
T ss_pred E---EEecc---CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEe
Confidence 1 11110 011234799999999776664 56889999987531 1122221 112 6789999999876665
Q ss_pred eC----------CCcEEEEECCCCeEEEEEcCCC---CCCeEEEEECCCCCEEEEeeCC--EEEEcCC
Q psy6127 459 ST----------DGQVHIWNAERGYKVCVLDGDH---PSAVQSLQFNPKYHMLASACSN--MAFWIPT 511 (515)
Q Consensus 459 s~----------dg~I~iwd~~~~~~~~~~~~~h---~~~V~~l~~sp~~~~las~~~d--v~iW~~~ 511 (515)
.. .+.|..+|. .++.+..+.... ...++.+++ .++.+.++.... +..++++
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 44 467888887 477777665421 235677777 456655554333 6666654
No 269
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=8.3e-05 Score=80.28 Aligned_cols=279 Identities=10% Similarity=0.039 Sum_probs=171.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEec-------CCCCceeEEEEecCCCeEEEEEeeCCCeEEEEE
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTIN-------SKKYGVDLIKFTHSKTTAIHASTKVDATLRYLS 293 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd 293 (515)
...|.++...++|.+. .|+.++-+..||..+++...... .....|.++...+++. +.+++ .+ .+.+||
T Consensus 162 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lwigt--~~-Gl~~~d 236 (781)
T 3v9f_A 162 SEQTWTATEAEDGKLY-IGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN-IWIGT--SK-GLALFN 236 (781)
T ss_dssp CCCEEEEEEEETTEEE-EEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC-EEEEE--TT-EEEEEE
T ss_pred ccceEEEEECCCCCEE-EEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC-EEEEe--CC-cHheEC
Confidence 3568888888777554 46666568899988765433211 1135688888777665 44444 34 799999
Q ss_pred CCCCeeeEEecC-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe---------------cCCCe
Q psy6127 294 LHDNKYVRYFPG-------HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ---------------LSGNK 351 (515)
Q Consensus 294 ~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------------~~~~~ 351 (515)
..+++....... ....|.++...++|. |..|+..+-|.++|..++....... ....+
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v 315 (781)
T 3v9f_A 237 ANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASA 315 (781)
T ss_dssp TTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCE
T ss_pred CCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeE
Confidence 887765432211 245699999887776 5556665678899987765432211 12347
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeee-------cCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q psy6127 352 PIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFK-------CPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDA 424 (515)
Q Consensus 352 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-------~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~ 424 (515)
.++..+++|. +-.|+.++-|..++...... .... ........|.++...++|. |.+|+.++-+..||.
T Consensus 316 ~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~ 390 (781)
T 3v9f_A 316 RYIFQDSFNN-IWIGTWGGGINFISNAPPTF---HTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFEN 390 (781)
T ss_dssp EEEEECSSCC-EEEEEBSSCEEEECSSCCSC---EEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEET
T ss_pred EEEEEeCCCC-EEEEecCCeEEEeCCCCCcc---eeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEEC
Confidence 7888888886 45566677788888764321 1111 1112345688999988876 445676667999997
Q ss_pred CCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEc-CCCCCCeEEEEECCCCCEEEEeeC
Q psy6127 425 FNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLD-GDHPSAVQSLQFNPKYHMLASACS 503 (515)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~las~~~ 503 (515)
.++...............|.++...++|.+.+ |+.++-+..+|..+++...... ......|.++...+++.+.+...+
T Consensus 391 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~ 469 (781)
T 3v9f_A 391 GKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHA 469 (781)
T ss_dssp TEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETT
T ss_pred CCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECC
Confidence 65433221110111223478888887777554 6666679999988776543221 113467999999998887766554
Q ss_pred CEEEEcCC
Q psy6127 504 NMAFWIPT 511 (515)
Q Consensus 504 dv~iW~~~ 511 (515)
.+..++..
T Consensus 470 Gl~~~~~~ 477 (781)
T 3v9f_A 470 GVFVIDLA 477 (781)
T ss_dssp EEEEEESS
T ss_pred ceEEEeCC
Confidence 47777654
No 270
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.63 E-value=5.3e-05 Score=69.12 Aligned_cols=205 Identities=10% Similarity=0.111 Sum_probs=134.3
Q ss_pred EecCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCeEEEEecC--CCeeEEEECCCCCEEEEEECCCcEEEEEee
Q psy6127 302 YFPGHVRKVSSLNLSPVDDSFI-SGSYDKTVRVWDLRQPNNVGMIQLS--GNKPIAAYDPEGLAFAIGVNSDSIKLYDVR 378 (515)
Q Consensus 302 ~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~ 378 (515)
.+.+-...+..++++|+++.|+ +...++.|...|.. ++..+.+... .....+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999877555 56778899999998 8888887554 357789999888776665567788888887
Q ss_pred cCCCC-Cceeeec---CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECC---CCceeEEeec----cccCCCCCEEEE
Q psy6127 379 SYDKG-PFASFKC---PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAF---NGNCVQSLSG----VLNNNASPLEAT 447 (515)
Q Consensus 379 ~~~~~-~~~~~~~---~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~---~~~~~~~~~~----~~~~~~~i~~~~ 447 (515)
..... ....... ....+....+++|+|.++.|+++.+.....+|.+. ....+..+.. .......+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 64320 1112211 12345567899999999888887766555555543 1111222211 011223478999
Q ss_pred EecCCC-EEEEEeCCCcEEEEECCCCeEEEEEcCCC--------CCCeEEEEECCCCCEEEEeeCCEEEEc
Q psy6127 448 FTPDSQ-FVASGSTDGQVHIWNAERGYKVCVLDGDH--------PSAVQSLQFNPKYHMLASACSNMAFWI 509 (515)
Q Consensus 448 ~sp~g~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--------~~~V~~l~~sp~~~~las~~~dv~iW~ 509 (515)
++|... +++.......+.++|.. |+.+..+.-.. -..-..|+|.|+|++.+++-.+ .+|.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~ 248 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN-RFYR 248 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT-EEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc-eEEE
Confidence 999755 44555566788899965 65665554311 1256899999999987776566 4443
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=1.8e-05 Score=78.81 Aligned_cols=244 Identities=14% Similarity=0.135 Sum_probs=144.0
Q ss_pred CcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeC---CCeEEEEECCCC
Q psy6127 222 DKINSLDYSS-DGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKV---DATLRYLSLHDN 297 (515)
Q Consensus 222 ~~I~~l~~sp-d~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~---d~~v~vwd~~~~ 297 (515)
.....++++| ++..|+.+...+.|+.+|..++...... ........++|+++++.++++.... ...+.+.+. .+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 3567889998 4556666665588999999876654433 3456688999999999777765211 113444443 23
Q ss_pred eee--EEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCeEEEEecC--CCeeEEEECCCCCEEEEE-ECCCc
Q psy6127 298 KYV--RYFPGHVRKVSSLNLSP-VDDSFISGSYDKTVRVWDLRQPNNVGMIQLS--GNKPIAAYDPEGLAFAIG-VNSDS 371 (515)
Q Consensus 298 ~~~--~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~g-~~dg~ 371 (515)
... ..+. .......++++| ++..+++-..++.|..+|...+......... .....++++|+|+++... ...+.
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 221 2222 123456788999 6666666667789999999876653333322 336789999999955544 46788
Q ss_pred EEEEEeecCCCC--CceeeecC-C-----------CCCcCeE-EEEEc--------CCCCEEEEEECCCcEEEEECCCCc
Q psy6127 372 IKLYDVRSYDKG--PFASFKCP-G-----------ERGCEWT-GLKFS--------PDGKLILVSTNGSIIRLFDAFNGN 428 (515)
Q Consensus 372 i~i~d~~~~~~~--~~~~~~~~-~-----------~~~~~i~-~l~~s--------p~~~~l~~~s~dg~i~iwd~~~~~ 428 (515)
|..++....... ....+... . ..-.... .++.. ++|...++-...+.|+.++ .+|.
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSE
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCc
Confidence 999887642110 00111100 0 0011122 45553 3455555545667888888 4564
Q ss_pred eeEEeecc-----cc----------CCCCCEEEEEecC-CCEEEEEeCCCcEEEEECC
Q psy6127 429 CVQSLSGV-----LN----------NNASPLEATFTPD-SQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 429 ~~~~~~~~-----~~----------~~~~i~~~~~sp~-g~~l~sgs~dg~I~iwd~~ 470 (515)
.. .+.+. .+ .-..+..++++|+ +.++++-..++.|+.++++
T Consensus 373 v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 373 VT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 33 33221 00 0124789999995 5555555566778887754
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.54 E-value=2.9e-05 Score=77.44 Aligned_cols=244 Identities=11% Similarity=0.049 Sum_probs=143.2
Q ss_pred CcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeC--CC-eEEEEECCC
Q psy6127 222 DKINSLDYSSD--GSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKV--DA-TLRYLSLHD 296 (515)
Q Consensus 222 ~~I~~l~~spd--~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~--d~-~v~vwd~~~ 296 (515)
.....++|+|+ +..|+.+...+.|+.+|..+++.... .........++++++++ ++++.... +. .+...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999995 44555554448999999987766544 33455689999999998 55554110 11 233333222
Q ss_pred Cee-eEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCeEEEE-ecC--CCeeEEEECCCCCEEEEE-ECCC
Q psy6127 297 NKY-VRYFPGHVRKVSSLNLSP-VDDSFISGSYDKTVRVWDLRQPNNVGMI-QLS--GNKPIAAYDPEGLAFAIG-VNSD 370 (515)
Q Consensus 297 ~~~-~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~--~~~~~~~~s~~~~~l~~g-~~dg 370 (515)
+.. ...+. .-.....++++| ++.+.++-..++.|+.+|..++.....+ ... .....++++|+++.|..+ ...+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111 01111 223456788999 6666656556788999999877763332 222 123469999999955554 4567
Q ss_pred cEEEEEeecCCCCC--ceeeecC-C-----------CCCcCeEEEEE---------cCCCCEEEEEECCCcEEEEECCCC
Q psy6127 371 SIKLYDVRSYDKGP--FASFKCP-G-----------ERGCEWTGLKF---------SPDGKLILVSTNGSIIRLFDAFNG 427 (515)
Q Consensus 371 ~i~i~d~~~~~~~~--~~~~~~~-~-----------~~~~~i~~l~~---------sp~~~~l~~~s~dg~i~iwd~~~~ 427 (515)
.|+.++........ ...+... . ..-.....+++ .++|.+.++-...+.|+.++. +|
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89888865321110 0011100 0 01123567999 777766666666788999984 56
Q ss_pred ceeEEeecccc---------------CCCCCEEEEEe-cCCCEEEEEeCCCcEEEEECC
Q psy6127 428 NCVQSLSGVLN---------------NNASPLEATFT-PDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 428 ~~~~~~~~~~~---------------~~~~i~~~~~s-p~g~~l~sgs~dg~I~iwd~~ 470 (515)
.. ..+.+... .-..+..++++ ++|.++++-..++.|+.++++
T Consensus 375 ~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 RV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 43 33332211 11236789999 566655555566788887764
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.54 E-value=4.1e-05 Score=79.33 Aligned_cols=195 Identities=13% Similarity=0.085 Sum_probs=119.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeEecCCCCce---------eEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEe
Q psy6127 233 GSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGV---------DLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYF 303 (515)
Q Consensus 233 ~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~ 303 (515)
+..++.++.++.|.-+|.++|+.+..+....... ..++. .+..+++++ .++.+..+|.++|+.+...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t--~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGT--LDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEE--TTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEe--CCCEEEEEECCCCCEEeee
Confidence 3456666664559999999999988775442210 11222 245566554 6999999999999988765
Q ss_pred cCCCC----CeE-EEEEcC---CCC-EEEEEe------CCCcEEEEEcCCCCeEEEEecCCC------------------
Q psy6127 304 PGHVR----KVS-SLNLSP---VDD-SFISGS------YDKTVRVWDLRQPNNVGMIQLSGN------------------ 350 (515)
Q Consensus 304 ~~h~~----~v~-~l~~~~---~~~-~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~------------------ 350 (515)
..... .+. ...... +++ .++.++ .++.|.-+|.++|+.+-.......
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 43220 111 111111 233 566655 378999999999998876543210
Q ss_pred ------------------------eeEEEECCCCCEEEEEEC--------------------C----CcEEEEEeecCCC
Q psy6127 351 ------------------------KPIAAYDPEGLAFAIGVN--------------------S----DSIKLYDVRSYDK 382 (515)
Q Consensus 351 ------------------------~~~~~~s~~~~~l~~g~~--------------------d----g~i~i~d~~~~~~ 382 (515)
-...+++|+...++.+.. | +.|..+|.++++.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 012466777778887763 2 5788888887652
Q ss_pred CCceeeecCCCC--------CcCeEEEEEc-CCCC---EEEEEECCCcEEEEECCCCceeEEeec
Q psy6127 383 GPFASFKCPGER--------GCEWTGLKFS-PDGK---LILVSTNGSIIRLFDAFNGNCVQSLSG 435 (515)
Q Consensus 383 ~~~~~~~~~~~~--------~~~i~~l~~s-p~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~~ 435 (515)
.- .... ..+ ..++ -+... .+|+ .++.++.+|.++++|..+|+.+.....
T Consensus 304 ~W--~~q~-~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 304 KW--FYQH-TPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EE--EEES-STTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred EE--EEeC-CCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 21 1111 111 1222 12222 4674 778899999999999999998766543
No 274
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.49 E-value=0.00011 Score=69.86 Aligned_cols=234 Identities=11% Similarity=0.061 Sum_probs=143.5
Q ss_pred EEEEEeCCCeEEEEECCCCe-eeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeee-EEecCCCCCeEE
Q psy6127 235 LLISCSDDDQIIIYDCEQGT-SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYV-RYFPGHVRKVSS 312 (515)
Q Consensus 235 ~lasgs~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~-~~~~~h~~~v~~ 312 (515)
+|+.+. ...|+..++.... ....+.........++|.+.+..++.+- ...+.|..+++..+... ..+...-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D-~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSD-VSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEE-TTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEE-CCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 344433 4678999988653 1111111224567899999888887775 35789999998766321 122222245678
Q ss_pred EEEcCCCCEE-EEEeCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECCCCCEEEEEEC--CCcEEEEEeecCCCCCceee
Q psy6127 313 LNLSPVDDSF-ISGSYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDPEGLAFAIGVN--SDSIKLYDVRSYDKGPFASF 388 (515)
Q Consensus 313 l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~ 388 (515)
+++.+.+..| ++-...+.|.++++......... ........++++|.+..++.... .+.|..+++..... ..+
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~ 160 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FII 160 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---EEE
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---EEE
Confidence 8998755544 44456688999998765443333 22344778999997766666653 46777777654221 111
Q ss_pred ecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEE
Q psy6127 389 KCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIW 467 (515)
Q Consensus 389 ~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iw 467 (515)
. ...-.....++++|++..|+.+. ..+.|..+|+.... .+.+.. .....+..+++.. +.++.+-...+.|..+
T Consensus 161 ~--~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~--~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 161 I--NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp E--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--SCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred E--ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec--CCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 1 11223457999999877777665 46789999986433 233321 1122367788763 3455555567889999
Q ss_pred ECCCCeEEEEEc
Q psy6127 468 NAERGYKVCVLD 479 (515)
Q Consensus 468 d~~~~~~~~~~~ 479 (515)
+..+|+....+.
T Consensus 235 ~~~~G~~~~~i~ 246 (318)
T 3sov_A 235 NKYTGEGLREIH 246 (318)
T ss_dssp ETTTCCSCEEEE
T ss_pred ECCCCCceEEEe
Confidence 987776555443
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.47 E-value=0.00059 Score=65.17 Aligned_cols=272 Identities=11% Similarity=0.099 Sum_probs=148.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEec----CCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTIN----SKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD 296 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~ 296 (515)
...+.++.|.+++..+++ +.+|.| +...+.|+.-.... .....+..+.|.+ ..+++++ ..+.|.. ..+.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g--~~g~i~~-S~Dg 107 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVG--EPPIMLH-TTDG 107 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEE--ETTEEEE-ESST
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEE--CCCeEEE-ECCC
Confidence 457999999887777774 566765 33333343222221 1244688899876 3444443 3665544 3333
Q ss_pred CeeeEEec---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe--cCCCeeEEEECCCCCEEEEEECCCc
Q psy6127 297 NKYVRYFP---GHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ--LSGNKPIAAYDPEGLAFAIGVNSDS 371 (515)
Q Consensus 297 ~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~ 371 (515)
++.-.... .+...+..+.+.+++..++.+ .++.|.. ..+.++.-.... ....+..+.+.|++.+++++. +|.
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~ 184 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGS 184 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSS
T ss_pred CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCc
Confidence 43322222 234567888887766655544 4565432 223344433332 234577889999988887664 444
Q ss_pred EEE-EEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecc-ccCCCCCEEEEEe
Q psy6127 372 IKL-YDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGV-LNNNASPLEATFT 449 (515)
Q Consensus 372 i~i-~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~i~~~~~s 449 (515)
+.. .|-. ........ ......+..+.++|++..+ .++.+|.+++.+...++.-..+... ......+..+++.
T Consensus 185 ~~~S~d~g---G~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 185 FYSTWEPG---QTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp EEEEECTT---CSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred EEEEeCCC---CCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 433 2210 11111222 2234567889999998765 4556787777643334433322211 1112237888999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEEEEcC--CCCCCeEEEEECCCCCEEEEeeCCEEEEcCC
Q psy6127 450 PDSQFVASGSTDGQVHIWNAERGYKVCVLDG--DHPSAVQSLQFNPKYHMLASACSNMAFWIPT 511 (515)
Q Consensus 450 p~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~las~~~dv~iW~~~ 511 (515)
+++.+++++. +|.+ ++..+.|+.-..+.. .....+.++.|.+++.+++.+ .+..|+..+
T Consensus 259 ~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G-~~G~i~~~~ 319 (327)
T 2xbg_A 259 TPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILG-QKGILLRYV 319 (327)
T ss_dssp SSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEEC-STTEEEEEC
T ss_pred CCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEc-CCceEEEEc
Confidence 8888777654 6766 445555544333331 134567889998766655544 444555443
No 276
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.46 E-value=0.0016 Score=72.58 Aligned_cols=283 Identities=12% Similarity=0.075 Sum_probs=158.9
Q ss_pred CCcEEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCeeeeEecCC-CCceeEEEEecCCCeEEEEEeeCCCeEEEE
Q psy6127 221 TDKINSLDYSSD------GSLLISCSD-DDQIIIYDCEQGTSKNTINSK-KYGVDLIKFTHSKTTAIHASTKVDATLRYL 292 (515)
Q Consensus 221 ~~~I~~l~~spd------~~~lasgs~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~~~d~~v~vw 292 (515)
...|.|+++.|. ++++|.|.. |++++|+++.+.+.+....-. .....++.+..-+...++..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 568999999863 479999996 999999999876665433221 123344443322223333333468887655
Q ss_pred EC--CCCeeeE---EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEE-EEecCCCeeEEEECCC--CCEEE
Q psy6127 293 SL--HDNKYVR---YFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVG-MIQLSGNKPIAAYDPE--GLAFA 364 (515)
Q Consensus 293 d~--~~~~~~~---~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~s~~--~~~l~ 364 (515)
.+ .+|+... .+-| ..++.-..+...+..-+.+..+....++--+ ++... .+....-.....|+.. .+-++
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEE
Confidence 54 4444331 2333 3456555555545533334445555555433 22221 1122221234455442 23455
Q ss_pred EEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC----------------------------
Q psy6127 365 IGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG---------------------------- 416 (515)
Q Consensus 365 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d---------------------------- 416 (515)
.. .++.++|..+.....-..+.+. -...++.++++|+.+.++.+..+
T Consensus 711 ~~-~~~~LrI~~i~~~~~~~~~~ip----L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 711 LA-NNSTLTIGTIDEIQKLHIRTVP----LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp EE-CSSCEEEEEECCSSSEEEEEEE----CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred EE-cCCceEEEEecccCCeeEEEEe----CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 44 4566999988654322122222 12356788898877765544311
Q ss_pred ---------------------CcEEEEECCCCceeEEeeccccCCCCCEEEE---EecC-CCEEEEEe----------CC
Q psy6127 417 ---------------------SIIRLFDAFNGNCVQSLSGVLNNNASPLEAT---FTPD-SQFVASGS----------TD 461 (515)
Q Consensus 417 ---------------------g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~---~sp~-g~~l~sgs----------~d 461 (515)
+.+++.|..+.+.+..+.-..+. .+.+++ |..+ ..++++|+ ..
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE--~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~ 863 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNE--YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ 863 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTE--EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCc--ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence 23667777777666555432221 244444 3322 46888886 34
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCCEEEEcCCCC
Q psy6127 462 GQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFWIPTLS 513 (515)
Q Consensus 462 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~dv~iW~~~~~ 513 (515)
|.|++|++..++..........++|++++-- +|+++|+.+..+++|++...
T Consensus 864 Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~ig~~l~vy~l~~~ 914 (1158)
T 3ei3_A 864 GRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASINSTVRLYEWTTE 914 (1158)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEETTEEEEEEECTT
T ss_pred eEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEcCCEEEEEECCCC
Confidence 7899999976554443333357889998744 45777777777999998754
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.45 E-value=2.4e-05 Score=83.95 Aligned_cols=244 Identities=9% Similarity=0.034 Sum_probs=133.1
Q ss_pred cccCC-cEEEEEEc-CCCCEEEEEeC-C----CeEEEEECCCC-eeee-EecCCCCceeEEEEecCCCeEEEEEeeCC--
Q psy6127 218 RENTD-KINSLDYS-SDGSLLISCSD-D----DQIIIYDCEQG-TSKN-TINSKKYGVDLIKFTHSKTTAIHASTKVD-- 286 (515)
Q Consensus 218 ~~h~~-~I~~l~~s-pd~~~lasgs~-d----g~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~~~d-- 286 (515)
++|.- .+...+|| |||++||.+.. + .+|+++|+.++ +.+. .+. .....++|+||++.+++......
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence 34553 68889999 99999886543 2 25999999988 6321 111 12346889999999888763222
Q ss_pred -CeEEEEECCCCee--eEEec-CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCC-eE--EEE-ec-CCCeeEE
Q psy6127 287 -ATLRYLSLHDNKY--VRYFP-GHVRKVSSLNLSPVDDSFISGSY---DKTVRVWDLRQPN-NV--GMI-QL-SGNKPIA 354 (515)
Q Consensus 287 -~~v~vwd~~~~~~--~~~~~-~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~-~~--~~~-~~-~~~~~~~ 354 (515)
..|+++++.++.. ...+. .+......+.|+|||++|+..+. ...|.++|+.++. .. ..+ .. ......+
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~ 325 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV 325 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence 3688889877642 22332 23345678899999998876653 3468888998763 12 333 21 2223334
Q ss_pred EECCCCCEEEEEEC-C--C--cEEEEEeecCCCCCcee-eecCCCCCcCeEEEEEcCCCCEE-EEEECCCc--EEEEEC-
Q psy6127 355 AYDPEGLAFAIGVN-S--D--SIKLYDVRSYDKGPFAS-FKCPGERGCEWTGLKFSPDGKLI-LVSTNGSI--IRLFDA- 424 (515)
Q Consensus 355 ~~s~~~~~l~~g~~-d--g--~i~i~d~~~~~~~~~~~-~~~~~~~~~~i~~l~~sp~~~~l-~~~s~dg~--i~iwd~- 424 (515)
.|+. |+.|+..+. + + .|..+|+.+.. .... +. .......+..+.+. ++.| ++...++. +.++++
T Consensus 326 ~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~--~~~~~li-~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~ 399 (751)
T 2xe4_A 326 QMHG-TSHLVILTNEGGAVNHKLLIAPRGQPS--DWSHVLV-DHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMAD 399 (751)
T ss_dssp EEET-TTEEEEEECTTTCTTCEEEEEETTSTT--CCCCEEE-CCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECC
T ss_pred eeee-CCEEEEEeCCCCCCCcEEEEEcCCCcc--cceeeEE-CCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecc
Confidence 4333 555555443 3 3 44445544311 1111 11 11222234455554 4444 45556665 555665
Q ss_pred ------CCCceeEEeeccccCCCCCEEEEE------ecCCC-EEEEEeCC---CcEEEEECCCCeE
Q psy6127 425 ------FNGNCVQSLSGVLNNNASPLEATF------TPDSQ-FVASGSTD---GQVHIWNAERGYK 474 (515)
Q Consensus 425 ------~~~~~~~~~~~~~~~~~~i~~~~~------sp~g~-~l~sgs~d---g~I~iwd~~~~~~ 474 (515)
..++....+... .. .....+ ++++. ++++.+.. +.++.+|+.+++.
T Consensus 400 ~~~~~~~~g~~~~~l~l~--~~--~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 400 SQDGVFKAGTGLREVVME--EP--IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTTSCCCTTTCCEECCCC--CS--SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred cccccccCCccceEECCC--Cc--eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 333313333211 11 122334 34554 44444332 4677888877653
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=6.3e-05 Score=74.93 Aligned_cols=237 Identities=11% Similarity=0.090 Sum_probs=139.3
Q ss_pred ceeEEEEec-CCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCC-C----cEEEEEcCC
Q psy6127 265 GVDLIKFTH-SKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYD-K----TVRVWDLRQ 338 (515)
Q Consensus 265 ~v~~~~~~~-~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g----~i~iwd~~~ 338 (515)
....++++| ++..++++. ..+.|+.+|+.++....... .......++|+++++.|+.+... + .+...+. .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d--~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVG--EQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEE--BTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCEEEECCCCCCeEEEEe--CCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence 457889998 466666665 23899999998776544433 45668899999999966666542 2 2333443 3
Q ss_pred CCeE--EEEecCCCeeEEEECC-CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-
Q psy6127 339 PNNV--GMIQLSGNKPIAAYDP-EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST- 414 (515)
Q Consensus 339 ~~~~--~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s- 414 (515)
+... ..+........++++| ++.++++-..++.|..++...... ..+... ........++|+|+|++|+.+.
T Consensus 214 g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~---~~~~~~-~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 214 SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET---TPLFTI-QDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE---EEEEEC-SSSSCCEEEEECTTSSEEEEEET
T ss_pred CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE---EEEEEc-CCCCcceeEEEcCCCCEEEEEEC
Confidence 3222 2333333467789999 677666666778899998865321 011111 1123456899999999666655
Q ss_pred CCCcEEEEECCC--Cce--eEEeecccc------------CCCCCE-EEEEe--------cCCCEEEEEeCCCcEEEEEC
Q psy6127 415 NGSIIRLFDAFN--GNC--VQSLSGVLN------------NNASPL-EATFT--------PDSQFVASGSTDGQVHIWNA 469 (515)
Q Consensus 415 ~dg~i~iwd~~~--~~~--~~~~~~~~~------------~~~~i~-~~~~s--------p~g~~l~sgs~dg~I~iwd~ 469 (515)
..+.|..++... ++. ...+.+... .-.... .++.. ++|.+.++-...+.|+.++
T Consensus 290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~- 368 (430)
T 3tc9_A 290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT- 368 (430)
T ss_dssp TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-
T ss_pred CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-
Confidence 567888887643 221 222222100 011133 45553 3455555555677899998
Q ss_pred CCCeEEEEEcCC---C-------------CCCeEEEEECCC-CCEEEEeeCC--EEEEcC
Q psy6127 470 ERGYKVCVLDGD---H-------------PSAVQSLQFNPK-YHMLASACSN--MAFWIP 510 (515)
Q Consensus 470 ~~~~~~~~~~~~---h-------------~~~V~~l~~sp~-~~~las~~~d--v~iW~~ 510 (515)
.+|+.....-.. . -.....++++|+ +.++++-.++ ++..++
T Consensus 369 ~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 369 PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 456544333110 0 125789999995 5555554444 555443
No 279
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.43 E-value=0.0022 Score=66.81 Aligned_cols=281 Identities=9% Similarity=0.033 Sum_probs=156.6
Q ss_pred ccCCcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeeEe-cCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC
Q psy6127 219 ENTDKINSLDYSSDGSLLISCSD--DDQIIIYDCEQGTSKNTI-NSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH 295 (515)
Q Consensus 219 ~h~~~I~~l~~spd~~~lasgs~--dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~ 295 (515)
+.-.....|++.|.+.+|+.+.. .+.|...++. |.....+ ...-.....+++.+++..++.+- ...+.|...|++
T Consensus 124 ~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD-~~~~~I~~~~~d 201 (619)
T 3s94_A 124 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWAD-AKLNFIHKSNLD 201 (619)
T ss_dssp SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEE-TTTCCEEEESSS
T ss_pred CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEe-CCCCeEEEecCC
Confidence 34455778999997666655543 3567777765 4333333 33445678999999998888886 357889999987
Q ss_pred CCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC-----------------C---------
Q psy6127 296 DNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS-----------------G--------- 349 (515)
Q Consensus 296 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----------------~--------- 349 (515)
.........+.-.....+++..+ ..+++-...+.|...|..+++....+... .
T Consensus 202 G~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng 280 (619)
T 3s94_A 202 GTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNG 280 (619)
T ss_dssp CCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGG
T ss_pred CCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCC
Confidence 65443333222223346677654 33344345678888888776543332110 0
Q ss_pred CeeEEEE-----------CCCC--------------C-EEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEE
Q psy6127 350 NKPIAAY-----------DPEG--------------L-AFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKF 403 (515)
Q Consensus 350 ~~~~~~~-----------s~~~--------------~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~ 403 (515)
....+|+ .|.| . +|+.+ ..+.|+..++...... ....+...-..+.+++|
T Consensus 281 ~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~---~~~~~~~~l~~~~~ld~ 356 (619)
T 3s94_A 281 GCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFT---DIVLQLEDIRHAIAIDY 356 (619)
T ss_dssp GCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCC---CEECCCSCCSSEEEEEE
T ss_pred cccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccc---eeEEeccccCccEEEEE
Confidence 0000111 1111 1 22222 3456666666543321 11111122334668999
Q ss_pred cCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEEcCC
Q psy6127 404 SPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVA-SGSTDGQVHIWNAERGYKVCVLDGD 481 (515)
Q Consensus 404 sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~ 481 (515)
++.+..|+.+. ..+.|+.++.........+.. ....+..+++.+.+..|+ +-+..+.|.+.++........+..
T Consensus 357 d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~---~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~- 432 (619)
T 3s94_A 357 DPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA---QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISE- 432 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT-
T ss_pred EcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC---CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEEC-
Confidence 99766666655 577899998765443333322 222367899997555454 445668899999875533222322
Q ss_pred CCCCeEEEEECCC-CCEEEEeeCC-EEEEcC
Q psy6127 482 HPSAVQSLQFNPK-YHMLASACSN-MAFWIP 510 (515)
Q Consensus 482 h~~~V~~l~~sp~-~~~las~~~d-v~iW~~ 510 (515)
.-....++++.|. |.+..+-.+. -+|+..
T Consensus 433 ~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~ 463 (619)
T 3s94_A 433 DLEEPRAIVLDPMVGYMYWTDWGEIPKIERA 463 (619)
T ss_dssp TCCSEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CCCCeeeEEEEcCCCcEEEecCCCCCEEEEE
Confidence 4456889999996 5554543232 455543
No 280
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.40 E-value=3.5e-05 Score=82.71 Aligned_cols=197 Identities=11% Similarity=0.064 Sum_probs=111.9
Q ss_pred ceeEEEEe-cCCCeEEEEEeeCC----CeEEEEECCCC-eeeEE-ecCCCCCeEEEEEcCCCCEEEEEeCC-----CcEE
Q psy6127 265 GVDLIKFT-HSKTTAIHASTKVD----ATLRYLSLHDN-KYVRY-FPGHVRKVSSLNLSPVDDSFISGSYD-----KTVR 332 (515)
Q Consensus 265 ~v~~~~~~-~~~~~l~~~s~~~d----~~v~vwd~~~~-~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~ 332 (515)
.+...+|+ |||+.++++.. .+ ..|+++|+.++ +.+.. +. .....++|+|||+.|+....| ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~-~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVD-MSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEE-SSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEe-CCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 57789999 99999888763 33 35999999998 63211 11 123468899999988777665 3588
Q ss_pred EEEcCCCCe--EEEEec--CCCeeEEEECCCCCEEEEEEC---CCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcC
Q psy6127 333 VWDLRQPNN--VGMIQL--SGNKPIAAYDPEGLAFAIGVN---SDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSP 405 (515)
Q Consensus 333 iwd~~~~~~--~~~~~~--~~~~~~~~~s~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 405 (515)
.+++.++.. ...+.. ......+.|+|||++|+..+. ...|.++|+.+..... ..............++.|+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCTTCCEEEEEET
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCCCceEEEeeee
Confidence 888887642 233322 223456889999999887663 3467778877642111 00111122233444555544
Q ss_pred CCCEEEEEE-CC----CcEEEEECCCCceeEE-eeccccCCCCCEEEEEecCCCEEEEEeCCCc--EEEEEC
Q psy6127 406 DGKLILVST-NG----SIIRLFDAFNGNCVQS-LSGVLNNNASPLEATFTPDSQFVASGSTDGQ--VHIWNA 469 (515)
Q Consensus 406 ~~~~l~~~s-~d----g~i~iwd~~~~~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~--I~iwd~ 469 (515)
|+.|+..+ .+ ..|..+++.++..... +..+.. ...+..+.+. .+.++++...+|. ++++++
T Consensus 330 -g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~-~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 330 -TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE-DVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp -TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS-SEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred -CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC-CcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 55554444 33 2566777765322222 222211 1113344443 2334556666775 555665
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.36 E-value=0.0018 Score=61.42 Aligned_cols=210 Identities=12% Similarity=0.039 Sum_probs=131.7
Q ss_pred CCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCC----CeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC
Q psy6127 221 TDKINSLDYSSDGSLLISC-SDDDQIIIYDCEQ----GTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH 295 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasg-s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~ 295 (515)
...+..++|++++..|+.+ ..++.|..++... ......+...-.....+++.+.+..++++. ...+.|.+.+..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d-~~~~~I~~~~~~ 107 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-SVLGTVSVADTK 107 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE-TTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEE-CCCCEEEEEeCC
Confidence 4567899999866555544 4568999999875 222222333334568899998777777765 357899999987
Q ss_pred CCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEE-CCCc
Q psy6127 296 DNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYD--KTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGV-NSDS 371 (515)
Q Consensus 296 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~-~dg~ 371 (515)
...........-.....+++.|.+..|+.+... +.|...++.......... .-.....++++|++..|..+. ..+.
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence 554333333334567899999977766655543 678888876443322222 123467899999877776655 5578
Q ss_pred EEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeec
Q psy6127 372 IKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSG 435 (515)
Q Consensus 372 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 435 (515)
|..+|+..... ..+...........++++. .+..+++-...+.|..++..+++....+..
T Consensus 188 I~~~d~dg~~~---~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 188 ISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp EEEEETTSCSC---EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EEEEecCCCce---EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence 99999864321 1221111122334578885 344444555678899999878876666543
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.35 E-value=0.00055 Score=66.04 Aligned_cols=207 Identities=8% Similarity=0.040 Sum_probs=133.4
Q ss_pred CcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeee
Q psy6127 222 DKINSLDYSSDGSLLISC-SDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYV 300 (515)
Q Consensus 222 ~~I~~l~~spd~~~lasg-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~ 300 (515)
..+..++|++.+..|+.+ ...+.|..++...+.....+.........+++.+.+..++.+. ...+.|.+.+++.....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d-~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD-SGTSRIEVANLDGAHRK 151 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEc-CCCCeEEEEcCCCCceE
Confidence 457899999866555544 4678899999886554444443445567899998888887765 35789999998755433
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEcCCCCeEEEEec-CCCeeEEEECCCCCEEEEEE-CCCcEEEEE
Q psy6127 301 RYFPGHVRKVSSLNLSPVDDSFISGSY-D-KTVRVWDLRQPNNVGMIQL-SGNKPIAAYDPEGLAFAIGV-NSDSIKLYD 376 (515)
Q Consensus 301 ~~~~~h~~~v~~l~~~~~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d 376 (515)
......-.....+++.|.+..|+.+.. . +.|..+++........... -.....++++|++..|..+. ..+.|..+|
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 334444456799999997766555543 4 7788888765433322221 23367899998777666654 467788888
Q ss_pred eecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeec
Q psy6127 377 VRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSG 435 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 435 (515)
+..... ..+. ........++++. .+...++-...+.|..++..+|+....+..
T Consensus 232 ~dG~~~---~~~~--~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 232 LDGSHR---KAVI--SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp TTSCSC---EEEE--CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCCCce---EEEE--eCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 765321 1111 1112345578883 444444445677888888777776666653
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.32 E-value=0.00043 Score=67.85 Aligned_cols=208 Identities=8% Similarity=0.042 Sum_probs=134.9
Q ss_pred CCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCee
Q psy6127 221 TDKINSLDYSSDGSLLI-SCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKY 299 (515)
Q Consensus 221 ~~~I~~l~~spd~~~la-sgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~ 299 (515)
...+..++|++.+..|+ +-...+.|..++...+.....+.........+++.+.+..++++- ...+.|.+.+++....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d-~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD-SGTSRIEVANLDGAHR 193 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEE-TTTTEEEECBTTSCSC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEc-CCCCeEEEEeCCCCce
Confidence 34578999998655555 444678999999886554444443444567889998888887765 3577899998875544
Q ss_pred eEEecCCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEcCCCCeEEEEec-CCCeeEEEECCCCCEEEEEE-CCCcEEEE
Q psy6127 300 VRYFPGHVRKVSSLNLSPVDDSFISGSY-D-KTVRVWDLRQPNNVGMIQL-SGNKPIAAYDPEGLAFAIGV-NSDSIKLY 375 (515)
Q Consensus 300 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~-~dg~i~i~ 375 (515)
...+...-.....+++.|.+..|+.+.. . +.|..+++........... -.....++++|++..|..+. ..+.|..+
T Consensus 194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 3344444467899999997776665544 3 6788888875544333322 22367899998777666654 46778888
Q ss_pred EeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeec
Q psy6127 376 DVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSG 435 (515)
Q Consensus 376 d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 435 (515)
|+..... ..+. ........++++. .+..+++-...+.|..++..+|+....+..
T Consensus 274 d~dG~~~---~~~~--~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 274 NLDGSHR---KAVI--SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp CTTSCSC---EEEE--CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred eCCCCee---EEEE--ECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 8764221 1111 1112345578883 444444555678899998777877666654
No 284
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=0.00052 Score=68.70 Aligned_cols=243 Identities=11% Similarity=0.051 Sum_probs=143.2
Q ss_pred ceeEEEEec-CCCeEEEEEeeCCCeEEEEECCCCeeeEEecCC---CCCeEEEEE-------cCCCCEEEEEeCCC----
Q psy6127 265 GVDLIKFTH-SKTTAIHASTKVDATLRYLSLHDNKYVRYFPGH---VRKVSSLNL-------SPVDDSFISGSYDK---- 329 (515)
Q Consensus 265 ~v~~~~~~~-~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h---~~~v~~l~~-------~~~~~~l~s~s~dg---- 329 (515)
....++|.| ++..++++. ...+.|++.|.+++......... ......++| +++++.|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~-~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICY-DGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEE-ETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEE-CCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 467899999 466666665 33568999999887766544332 235899999 99999777766554
Q ss_pred ---cEEEEEcCC-CCeE-----EEEecCCCeeEEEECCC-CCEEEEEECCCcEEEEEee-------cCCC-CC-------
Q psy6127 330 ---TVRVWDLRQ-PNNV-----GMIQLSGNKPIAAYDPE-GLAFAIGVNSDSIKLYDVR-------SYDK-GP------- 384 (515)
Q Consensus 330 ---~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~i~d~~-------~~~~-~~------- 384 (515)
.|.+++... +... ..+........++++|+ +.++++-..++.|..+|+. ++.. .+
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266666443 2221 22222223567889994 5555566678889999997 3332 00
Q ss_pred -ceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEEC--CCCce--eEEeecccc------------CCCCCE-E
Q psy6127 385 -FASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDA--FNGNC--VQSLSGVLN------------NNASPL-E 445 (515)
Q Consensus 385 -~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~--~~~~~--~~~~~~~~~------------~~~~i~-~ 445 (515)
...+.. .........++|+|+|++|+.+. ..+.|+.++. ..+.. ...+.+... .-..+. .
T Consensus 299 ~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 299 TFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred ccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 011111 12233456899999999766655 5678888654 33322 122322110 011234 4
Q ss_pred EEEe-------cCCCEEEEEeCCCcEEEEECCCCeEEEEEcCC-----------------------CCCCeEEEEECCC-
Q psy6127 446 ATFT-------PDSQFVASGSTDGQVHIWNAERGYKVCVLDGD-----------------------HPSAVQSLQFNPK- 494 (515)
Q Consensus 446 ~~~s-------p~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-----------------------h~~~V~~l~~sp~- 494 (515)
++.. ++|.++++-...+.|+.++ .+|... ++-+. .-.....|+++++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 4554 4566666666778999999 466433 33221 0124678999997
Q ss_pred CCEEEEeeCC--EEEEcCC
Q psy6127 495 YHMLASACSN--MAFWIPT 511 (515)
Q Consensus 495 ~~~las~~~d--v~iW~~~ 511 (515)
+.+.++-.++ ||.++++
T Consensus 456 g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp TEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECC
Confidence 6655554454 5555544
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.31 E-value=0.0019 Score=63.46 Aligned_cols=211 Identities=12% Similarity=0.048 Sum_probs=136.4
Q ss_pred cCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC----eeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEEC
Q psy6127 220 NTDKINSLDYSSDGSLLISC-SDDDQIIIYDCEQG----TSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL 294 (515)
Q Consensus 220 h~~~I~~l~~spd~~~lasg-s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~ 294 (515)
....+..++|++.+..|+.+ ...+.|+.+++... .....+.........+++.+.+..++.+- ...+.|.+.++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d-~~~~~I~~~~~ 188 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-SVLGTVSVADT 188 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEECT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEE-CCCCeEEEEeC
Confidence 45678899999866555554 45688999988752 23333443445678899998777777775 45789999998
Q ss_pred CCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCeEEEEecC-CCeeEEEECCCCCEEEEEE-CCC
Q psy6127 295 HDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSY--DKTVRVWDLRQPNNVGMIQLS-GNKPIAAYDPEGLAFAIGV-NSD 370 (515)
Q Consensus 295 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~-~dg 370 (515)
+.......+...-.....+++.|.+..|+.+.. .+.|...++............ .....+++++++..|..+. ..+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 766544444444456889999997776666553 378888888765444333322 3477899999877777665 467
Q ss_pred cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeec
Q psy6127 371 SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSG 435 (515)
Q Consensus 371 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 435 (515)
.|..+|+..... ..+...........++++. .+..+++-...+.|..+|..+|+.+..+..
T Consensus 269 ~I~~~d~dG~~~---~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 269 SISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp EEEEEETTSCCC---EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred EEEEEeCCCCcc---EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 888888865321 1221111122234477773 333444555678899999888877766653
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.31 E-value=0.00018 Score=71.64 Aligned_cols=238 Identities=11% Similarity=0.089 Sum_probs=139.9
Q ss_pred ceeEEEEecC--CCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcC
Q psy6127 265 GVDLIKFTHS--KTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDK-----TVRVWDLR 337 (515)
Q Consensus 265 ~v~~~~~~~~--~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-----~i~iwd~~ 337 (515)
....++|.|+ +..++++. ..+.|+.+|..+++..... ........++++++|+ |+.+...+ .+...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D--~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVG--QRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEEC--BTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEe--CCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 4678999985 55566554 2389999999887765543 3455689999999999 44444321 23333332
Q ss_pred CCCe-EEEEecCCCeeEEEECC-CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-
Q psy6127 338 QPNN-VGMIQLSGNKPIAAYDP-EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST- 414 (515)
Q Consensus 338 ~~~~-~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s- 414 (515)
.+.. ...+........++++| +|.++++-..++.|+.+|..++.. ...+..... ...-..++|+|++++|+.+.
T Consensus 216 ~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~--~~~~~~~~~-~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 216 SGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL--TEEEVMMDT-KGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp GTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE--EEEEEECSC-CSSCEEEEECTTSSEEEEEET
T ss_pred CCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE--EEEEeccCC-CCCcccEEEeCCCCEEEEEeC
Confidence 2211 12222233466789999 677666665678888888764331 011111111 12234799999999666665
Q ss_pred CCCcEEEEECC--CCce--eEEeecccc------------CCCCCEEEEE---------ecCCCEEEEEeCCCcEEEEEC
Q psy6127 415 NGSIIRLFDAF--NGNC--VQSLSGVLN------------NNASPLEATF---------TPDSQFVASGSTDGQVHIWNA 469 (515)
Q Consensus 415 ~dg~i~iwd~~--~~~~--~~~~~~~~~------------~~~~i~~~~~---------sp~g~~l~sgs~dg~I~iwd~ 469 (515)
..+.|+.++.. ++.. ...+.+... .-.....+++ .++|.+.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 46789998865 3321 122222100 1123577999 677777776667788999985
Q ss_pred CCCeEEEEEcCCC----------------CCCeEEEEEC-CCCCEEEEeeCC--EEEEcC
Q psy6127 470 ERGYKVCVLDGDH----------------PSAVQSLQFN-PKYHMLASACSN--MAFWIP 510 (515)
Q Consensus 470 ~~~~~~~~~~~~h----------------~~~V~~l~~s-p~~~~las~~~d--v~iW~~ 510 (515)
+|......-... -.....|+++ +++.++++-.++ |+..++
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 665443331100 1237799999 566666654444 554443
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.30 E-value=0.0004 Score=65.77 Aligned_cols=200 Identities=14% Similarity=0.213 Sum_probs=132.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecC----CCe--EEEEEeeC--CCeEEEEEC--CCCeee
Q psy6127 231 SDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHS----KTT--AIHASTKV--DATLRYLSL--HDNKYV 300 (515)
Q Consensus 231 pd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~~~s~~~--d~~v~vwd~--~~~~~~ 300 (515)
|...+++.....+-+.+||+ +|+.+..+.. +.++.+..-|. +.. +++++... +++|.+|++ .++. +
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 34455666667788999999 7999888864 45666666552 222 55666545 689999976 3443 4
Q ss_pred EEecC------CC-CCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEcC-------CCCeEEEEecCCCeeEEEECCCCCE
Q psy6127 301 RYFPG------HV-RKVSSLNL--SPV-DD-SFISGSYDKTVRVWDLR-------QPNNVGMIQLSGNKPIAAYDPEGLA 362 (515)
Q Consensus 301 ~~~~~------h~-~~v~~l~~--~~~-~~-~l~s~s~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~s~~~~~ 362 (515)
..+.. .. ..+..+++ +|. ++ +++....+|.+..|++. +.+.++.+...+.+..+..++....
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence 44421 11 45667777 664 44 67888889999999882 3456778888888999999999999
Q ss_pred EEEEECCCcEEEEEeecCCCCCceeeec--CCCCCcCeEEEEE--cCCCC-EEEEEE-CCCcEEEEECC-CCceeEEee
Q psy6127 363 FAIGVNSDSIKLYDVRSYDKGPFASFKC--PGERGCEWTGLKF--SPDGK-LILVST-NGSIIRLFDAF-NGNCVQSLS 434 (515)
Q Consensus 363 l~~g~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~l~~--sp~~~-~l~~~s-~dg~i~iwd~~-~~~~~~~~~ 434 (515)
|..+-++.-|..|+.+.........+.. ...-...+..+++ .++++ ||++++ .+++..+||.. +.+.+..+.
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 9999888665555544322111112221 1222335778888 45555 777777 56799999986 666666664
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.00028 Score=70.64 Aligned_cols=252 Identities=13% Similarity=0.132 Sum_probs=146.9
Q ss_pred cEEEEEEcC-CCCEEEEE-eCCCeEEEEECCCCeeeeEecCC---CCceeEEEE-------ecCCCeEEEEEeeCC----
Q psy6127 223 KINSLDYSS-DGSLLISC-SDDDQIIIYDCEQGTSKNTINSK---KYGVDLIKF-------THSKTTAIHASTKVD---- 286 (515)
Q Consensus 223 ~I~~l~~sp-d~~~lasg-s~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~s~~~d---- 286 (515)
....|+|+| ++..|+.+ ...+.|++.|.+++......... ......++| ++++..++++.- .+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~-~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAID-YDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEEC-CCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeC-CCCCcc
Confidence 568899999 34444444 44477999999877666554432 235889999 999998777752 22
Q ss_pred --CeEEEEECCC-Ceee-----EEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcC-------CCCe---------
Q psy6127 287 --ATLRYLSLHD-NKYV-----RYFPGHVRKVSSLNLSPVDD-SFISGSYDKTVRVWDLR-------QPNN--------- 341 (515)
Q Consensus 287 --~~v~vwd~~~-~~~~-----~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~-------~~~~--------- 341 (515)
..|.+++... +... ..+.. -.....++++|++. ++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 1366776443 2221 12211 12345778899554 55556677889999987 5543
Q ss_pred --E-EEEec--CCCeeEEEECCCCCEEEEE-ECCCcEEEEEeecCCCCC--ceeeecC-C--C---------CCcCeE-E
Q psy6127 342 --V-GMIQL--SGNKPIAAYDPEGLAFAIG-VNSDSIKLYDVRSYDKGP--FASFKCP-G--E---------RGCEWT-G 400 (515)
Q Consensus 342 --~-~~~~~--~~~~~~~~~s~~~~~l~~g-~~dg~i~i~d~~~~~~~~--~~~~~~~-~--~---------~~~~i~-~ 400 (515)
. ..+.. ......++|+|+|+.|..+ +..+.|+.++........ ...+.-. . + .-.... .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 1 22222 2335689999999965544 466788887765422100 0011100 0 0 111233 4
Q ss_pred EEEc-------CCCCEEEEEECCCcEEEEECCCCceeEEeeccc--------------c-------CCCCCEEEEEecC-
Q psy6127 401 LKFS-------PDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVL--------------N-------NNASPLEATFTPD- 451 (515)
Q Consensus 401 l~~s-------p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~--------------~-------~~~~i~~~~~sp~- 451 (515)
++.. +++.+.++=...+.|+.++ .+|. +.++.+.. . .-..+..++++++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 5554 4566555555678899998 5664 44444321 0 0123678999997
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy6127 452 SQFVASGSTDGQVHIWNAERGYKVCVL 478 (515)
Q Consensus 452 g~~l~sgs~dg~I~iwd~~~~~~~~~~ 478 (515)
|.++++=..++.|+.++++...+....
T Consensus 456 g~lyVaD~~N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTISMEQEENVAGD 482 (496)
T ss_dssp TEEEEEETTTTEEEEEEECCCC-----
T ss_pred CEEEEEeCCCCEEEEEECCCCcccccC
Confidence 666665566788999998776655543
No 289
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.27 E-value=2.3e-05 Score=82.79 Aligned_cols=256 Identities=9% Similarity=0.026 Sum_probs=140.5
Q ss_pred EEEEccceeeeeEeeeeccc-cCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeeEecCCCCc-eeEEEEecCCC
Q psy6127 200 ITKCSENLVRSYRVAKVFRE-NTDKINSLDYSSDGSLLISCSD-DDQIIIYDCEQGTSKNTINSKKYG-VDLIKFTHSKT 276 (515)
Q Consensus 200 ~i~~wd~~~~~~~~~~~~~~-h~~~I~~l~~spd~~~lasgs~-dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~ 276 (515)
.+.+||.....|+.+..+.. +.....++++.+++++++.|+. ++.+.+||..+++-...-..+... -.+++..++++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~ 299 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 299 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence 46667754455555444432 3334446778899999999984 468999998876543322222211 23445556776
Q ss_pred eEEEEEeeCC-----CeEEEEECCCCeeeEEe----cCCCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCC
Q psy6127 277 TAIHASTKVD-----ATLRYLSLHDNKYVRYF----PGHVRKVSSLNLSPVDDSFISGSYD---------KTVRVWDLRQ 338 (515)
Q Consensus 277 ~l~~~s~~~d-----~~v~vwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~l~s~s~d---------g~i~iwd~~~ 338 (515)
.++ .+|..+ ..+.+||..+++-...- ......-....+..++..++.|+.+ ..+..||..+
T Consensus 300 iyv-~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~ 378 (656)
T 1k3i_A 300 VFT-IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 378 (656)
T ss_dssp EEE-ECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred EEE-EeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCC
Confidence 444 333223 57999999887644320 0000000001122345555555544 3567899888
Q ss_pred CCeEEEEecCC----------CeeEEEEC-CCCCEEEEEECCC-----------cEEEEEeecCCCCCceeee-cCCCCC
Q psy6127 339 PNNVGMIQLSG----------NKPIAAYD-PEGLAFAIGVNSD-----------SIKLYDVRSYDKGPFASFK-CPGERG 395 (515)
Q Consensus 339 ~~~~~~~~~~~----------~~~~~~~s-~~~~~l~~g~~dg-----------~i~i~d~~~~~~~~~~~~~-~~~~~~ 395 (515)
........... ...++.+. .+++.+++|+.++ .+.+||..+... .... ......
T Consensus 379 ~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W---~~~~~~~mp~~ 455 (656)
T 1k3i_A 379 SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN---TVFASNGLYFA 455 (656)
T ss_dssp TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE---EEECTTCCSSC
T ss_pred cceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe---eEEccCCCCCC
Confidence 76554332111 12334443 4777888887532 566777655331 1111 011111
Q ss_pred cCeEEEEEcCCCCEEEEEECC-----------CcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeC
Q psy6127 396 CEWTGLKFSPDGKLILVSTNG-----------SIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGST 460 (515)
Q Consensus 396 ~~i~~l~~sp~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~ 460 (515)
....+.+..|+++.+++|+.+ ..+.+||..+.+... +..............+.|+|++++.|+.
T Consensus 456 R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 456 RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee-cCCCCCccccccHhhcCCCcEEEecCCC
Confidence 122356677899999998754 468999988765432 2211112222345567799999999985
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.23 E-value=0.0021 Score=68.75 Aligned_cols=234 Identities=13% Similarity=0.030 Sum_probs=144.5
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCC----eeeEEecCCCCCe
Q psy6127 235 LLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDN----KYVRYFPGHVRKV 310 (515)
Q Consensus 235 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~----~~~~~~~~h~~~v 310 (515)
+|+.+ ....|+..++........+. ....+..++|.+....++++. ...+.|+.+++... .....+.......
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD-~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEE-TTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEee-ccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 44444 34568888887655444333 346678999999888887776 35788999998753 2233333344567
Q ss_pred EEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCeEEEEe-cCCCeeEEEECCCCCEEEEEEC-C-CcEEEEEeecCCCCCce
Q psy6127 311 SSLNLSPVDDSFISG-SYDKTVRVWDLRQPNNVGMIQ-LSGNKPIAAYDPEGLAFAIGVN-S-DSIKLYDVRSYDKGPFA 386 (515)
Q Consensus 311 ~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~-d-g~i~i~d~~~~~~~~~~ 386 (515)
..|++.+.++.|+.+ ...+.|.+.++........+. .-.....++++|.+..|+.... . +.|...++....
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~----- 548 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----- 548 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-----
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-----
Confidence 789999877655544 557889999998665444443 2234788999998666666553 2 677777776432
Q ss_pred eeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEE-eCCCcE
Q psy6127 387 SFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASG-STDGQV 464 (515)
Q Consensus 387 ~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sg-s~dg~I 464 (515)
.............+|++++.+..|+.+. ..+.|...++........+.... .......+++. +..|+.. ...+.|
T Consensus 549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~--~~~lYwtD~~~~~I 625 (791)
T 3m0c_C 549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKVFWTDIINEAI 625 (791)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCC-ccCCCCEEEEe--CCEEEEEECCCCEE
Confidence 1111122234567999998877777765 45679999985444333332211 11124566664 3345444 456788
Q ss_pred EEEECCCCeEEEEEc
Q psy6127 465 HIWNAERGYKVCVLD 479 (515)
Q Consensus 465 ~iwd~~~~~~~~~~~ 479 (515)
...|..+|+.+..+.
T Consensus 626 ~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 626 FSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEETTTCCCCEEEE
T ss_pred EEEeCCCCcceEEee
Confidence 888877776555553
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.22 E-value=0.0021 Score=62.02 Aligned_cols=230 Identities=13% Similarity=0.118 Sum_probs=124.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--eEec---CCCCceeEEEEecC---CCeEEEEEeeCC----Ce
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSK--NTIN---SKKYGVDLIKFTHS---KTTAIHASTKVD----AT 288 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~--~~~~---~~~~~v~~~~~~~~---~~~l~~~s~~~d----~~ 288 (515)
-.....++|.|||++++ +..+|.|++++ +++.. ..+. ........++|+|+ +..++++..... +.
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34567999999998555 45679999998 44422 2221 22456889999998 666666653211 67
Q ss_pred EEEEECCCCe-----ee-EEec---CCCCCeEEEEEcCCCCEEEEEeC-------------CCcEEEEEcCC--------
Q psy6127 289 LRYLSLHDNK-----YV-RYFP---GHVRKVSSLNLSPVDDSFISGSY-------------DKTVRVWDLRQ-------- 338 (515)
Q Consensus 289 v~vwd~~~~~-----~~-~~~~---~h~~~v~~l~~~~~~~~l~s~s~-------------dg~i~iwd~~~-------- 338 (515)
|..++...+. .+ ..+. +.......++|.|||.+.++.+. .|.|.-+|...
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888876431 11 2233 11123468999999986665432 14566666543
Q ss_pred ------CCeEEEEecCCCeeEEEECC-CCCEEEEEECCCcE------EEEEeecCCCC-------------CceeeecCC
Q psy6127 339 ------PNNVGMIQLSGNKPIAAYDP-EGLAFAIGVNSDSI------KLYDVRSYDKG-------------PFASFKCPG 392 (515)
Q Consensus 339 ------~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i------~i~d~~~~~~~-------------~~~~~~~~~ 392 (515)
...+.... ......++|+| ++.++++-...+.+ .+.-+..+... ........
T Consensus 187 ~~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 187 LGRRGARPEVYSLG-HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TTCTTSCTTEEEEC-CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred cCCCCCCccEEEEc-CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 01111111 12356789999 66666554333331 23333322100 00011111
Q ss_pred CCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce------eEEeeccccCCCCCEEEEEecCCCEEEEEe
Q psy6127 393 ERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNC------VQSLSGVLNNNASPLEATFTPDSQFVASGS 459 (515)
Q Consensus 393 ~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~------~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs 459 (515)
.+......++| .+|..+++....+.|...++..... ...+. .....+..+++.|||.++++..
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~---~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL---SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE---ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec---ccCCCeeEEEECCCCcEEEEEe
Confidence 11224557787 4666655555667777777654321 11221 1224588999999998766654
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.19 E-value=0.00081 Score=63.10 Aligned_cols=209 Identities=10% Similarity=0.144 Sum_probs=130.2
Q ss_pred ecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEE-ecC----CC--CCeEEEEE---cCCCCEEEEEe--
Q psy6127 259 INSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRY-FPG----HV--RKVSSLNL---SPVDDSFISGS-- 326 (515)
Q Consensus 259 ~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~-~~~----h~--~~v~~l~~---~~~~~~l~s~s-- 326 (515)
++....-..+++|.+....+++.+ -..++|..||...+..... +.+ .. ..+..+.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~-l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSN-LYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEE-TTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEe-ccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 344444566788998877777665 3689999999986644333 322 11 14689999 68877777544
Q ss_pred -----------CCCcEEEEEcC---CCCeEEEEecC--------------CCeeEEEECCCCCEEEEEECC-CcEEEEEe
Q psy6127 327 -----------YDKTVRVWDLR---QPNNVGMIQLS--------------GNKPIAAYDPEGLAFAIGVNS-DSIKLYDV 377 (515)
Q Consensus 327 -----------~dg~i~iwd~~---~~~~~~~~~~~--------------~~~~~~~~s~~~~~l~~g~~d-g~i~i~d~ 377 (515)
.+..|..+|+. +++.+...... .....++.+++|+..++++.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 26789999999 78777665432 136789999999999998887 77666655
Q ss_pred ecCCCCCceeeec-C--CCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcee-EEee--ccccCCCCCEEE-EEec
Q psy6127 378 RSYDKGPFASFKC-P--GERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCV-QSLS--GVLNNNASPLEA-TFTP 450 (515)
Q Consensus 378 ~~~~~~~~~~~~~-~--~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~-~~~~--~~~~~~~~i~~~-~~sp 450 (515)
.... ...... . .......+.|+++|+|+.|++....|.+..+|+.+.... .... +..........+ ..-.
T Consensus 167 dG~~---~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 167 DGKT---VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp TSCC---EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred CCCE---EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 4321 111111 1 122234669999999999988877999999998843220 1111 111111112333 3334
Q ss_pred CCCE-EEEEeCCCcEEEEECCC
Q psy6127 451 DSQF-VASGSTDGQVHIWNAER 471 (515)
Q Consensus 451 ~g~~-l~sgs~dg~I~iwd~~~ 471 (515)
+|+. +++.+..+.+.+.+.+.
T Consensus 244 ~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 244 GNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEEEETTEEEEEECSST
T ss_pred CCEEEEEEcCCCCEEEEECCCC
Confidence 7777 44444566666665544
No 293
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.18 E-value=0.0043 Score=57.70 Aligned_cols=253 Identities=11% Similarity=0.098 Sum_probs=153.4
Q ss_pred CCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCE
Q psy6127 242 DDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDS 321 (515)
Q Consensus 242 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 321 (515)
+..|.|.|+.++......... ..+.-.+|..+.+++-+ ..++.++|+++.+.+..+.- ...|.-=.|-.+. .
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~~ViALra---g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~ 119 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA---GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-T 119 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE---TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-E
T ss_pred CCEEEEEECCCCCCccccccc---cceeeeCCCccEEEEec---CCeEEEechHHhhhhcceec-CCccEEEEecCCC-e
Confidence 347888899876554332211 12334588877666654 78999999999999888764 4567777776544 3
Q ss_pred EEEEeCCCcEEEEEcCC-CCeEEEEecC-----CCeeEEEECCCCCEEEEEEC-------CCcEEEEEeecCCCCCceee
Q psy6127 322 FISGSYDKTVRVWDLRQ-PNNVGMIQLS-----GNKPIAAYDPEGLAFAIGVN-------SDSIKLYDVRSYDKGPFASF 388 (515)
Q Consensus 322 l~s~s~dg~i~iwd~~~-~~~~~~~~~~-----~~~~~~~~s~~~~~l~~g~~-------dg~i~i~d~~~~~~~~~~~~ 388 (515)
|+-.+ +..|.-|++.. ..+.+.+..+ ..+-....+++.++++..+- .|.+.+|..+... .
T Consensus 120 L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------s 192 (365)
T 2xzh_A 120 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------S 192 (365)
T ss_dssp EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------E
T ss_pred EEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------c
Confidence 44433 46799999975 4556666433 23455677888898776442 3677888876532 2
Q ss_pred ecCCCCCcCeEEEEEcC--CC-CEEEEEEC---CCcEEEEECCCC---c------eeEEeeccccCCCCCEEEEEecCCC
Q psy6127 389 KCPGERGCEWTGLKFSP--DG-KLILVSTN---GSIIRLFDAFNG---N------CVQSLSGVLNNNASPLEATFTPDSQ 453 (515)
Q Consensus 389 ~~~~~~~~~i~~l~~sp--~~-~~l~~~s~---dg~i~iwd~~~~---~------~~~~~~~~~~~~~~i~~~~~sp~g~ 453 (515)
+...+|......+.+.. .. +.+..+.. .+.+++.++... . ....+...........++..++...
T Consensus 193 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg 272 (365)
T 2xzh_A 193 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD 272 (365)
T ss_dssp EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT
T ss_pred ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC
Confidence 22234433322222211 11 13333332 258888887432 1 1111122222344567889999889
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCCEEEEcC
Q psy6127 454 FVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFWIP 510 (515)
Q Consensus 454 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~dv~iW~~ 510 (515)
.++.-+.-|.+++||+++|.++..-+- ...+|..-+-+.+..=++.-...+.|..+
T Consensus 273 viyviTK~G~ihlyDleTgt~i~~nrI-S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSV 328 (365)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTCEEEEE
T ss_pred EEEEEeCCcEEEEEEcccCcEEEEecc-CCCceEEecccCCCCcEEEEcCCCEEEEE
Confidence 999999999999999999999988776 55667655554433333333344444443
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.18 E-value=9.2e-06 Score=86.16 Aligned_cols=240 Identities=12% Similarity=0.048 Sum_probs=140.7
Q ss_pred CCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC----CeeeEEecCCCCCeEEEEEcC
Q psy6127 242 DDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD----NKYVRYFPGHVRKVSSLNLSP 317 (515)
Q Consensus 242 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~----~~~~~~~~~h~~~v~~l~~~~ 317 (515)
.+.|+..++.+.+....+.. ...+..++|.+.+..++++. ...+.|+.+++.. ......+.........+++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD-~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECC-TTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEe-cCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 35788888876655443333 34567899999888877764 3467899999875 222222222223355688876
Q ss_pred CCCE-EEEEeCCCcEEEEEcCCCCeEEEEec-CCCeeEEEECCCCCEEEEEEC--CCcEEEEEeecCCCCCceeeecCCC
Q psy6127 318 VDDS-FISGSYDKTVRVWDLRQPNNVGMIQL-SGNKPIAAYDPEGLAFAIGVN--SDSIKLYDVRSYDKGPFASFKCPGE 393 (515)
Q Consensus 318 ~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~ 393 (515)
.+.. +++-...+.|.++++........+.. ......++++|.+..|+.... .+.|..+++...... .+. ..
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~---~l~--~~ 537 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLV--TE 537 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---EES--CS
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---EEE--eC
Confidence 5544 44445568899999876554443332 234677899997665554432 267777776542211 111 11
Q ss_pred CCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q psy6127 394 RGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472 (515)
Q Consensus 394 ~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~ 472 (515)
.......|+|+|++..|+.+. ..+.|..+++.... .+.+............+++..+ .++++....+.|..++..+|
T Consensus 538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 122345899999876666555 56789999986433 3333221111122456666544 44455556789999999889
Q ss_pred eEEEEEcCCCCCCeEEEEE
Q psy6127 473 YKVCVLDGDHPSAVQSLQF 491 (515)
Q Consensus 473 ~~~~~~~~~h~~~V~~l~~ 491 (515)
+.+..+.. .....++|++
T Consensus 616 ~~~~~i~~-~~~~P~~i~v 633 (699)
T 1n7d_A 616 SDVNLLAE-NLLSPEDMVL 633 (699)
T ss_dssp EEEECCCT-TCSSCCCCCB
T ss_pred CceEEeec-CCCCCcEEEE
Confidence 88877754 2223444543
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.14 E-value=0.0081 Score=62.60 Aligned_cols=231 Identities=9% Similarity=0.039 Sum_probs=147.2
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeEecC-CCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEE
Q psy6127 235 LLISCSDDDQIIIYDCEQGTSKNTINS-KKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSL 313 (515)
Q Consensus 235 ~lasgs~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l 313 (515)
+|+.+ ..+.|+..++++......+.. .-..+..++|.+.+..++.+. ..++.|..+++........+.........+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD-~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTD-ISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEE-CCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 55554 457899999986554333332 234688999999988888776 358899999987654443343333457789
Q ss_pred EEcCCCCEEEEE-eCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECCCCCEEEEEEC--CCcEEEEEeecCCCCCceeee
Q psy6127 314 NLSPVDDSFISG-SYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDPEGLAFAIGVN--SDSIKLYDVRSYDKGPFASFK 389 (515)
Q Consensus 314 ~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~ 389 (515)
++.+.+..|+.+ ...+.|.+.++......... ..-.....++++|....|..... .+.|...++..... ..+.
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~---~~l~ 162 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER---TTLV 162 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEE
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce---EEEE
Confidence 998776655544 45678999998765443333 22344788999996666666553 45676666654321 1111
Q ss_pred cCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEE
Q psy6127 390 CPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWN 468 (515)
Q Consensus 390 ~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd 468 (515)
........++++++++.|+.+. ..+.|..+|+..... ..+..... ....+++.. +.++++-...+.|...|
T Consensus 163 ---~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~---~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 163 ---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLP---HPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp ---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCS---CEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred ---CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCC---CceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 1234567999999887777765 467899999865443 33333222 267788865 44444444578899999
Q ss_pred CCCCeEEEEE
Q psy6127 469 AERGYKVCVL 478 (515)
Q Consensus 469 ~~~~~~~~~~ 478 (515)
..+|+....+
T Consensus 235 k~tg~~~~~l 244 (628)
T 4a0p_A 235 KTSGQNRTII 244 (628)
T ss_dssp TTTCCSCEEE
T ss_pred CCCCCceEEE
Confidence 7777544333
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.13 E-value=0.0019 Score=61.25 Aligned_cols=206 Identities=10% Similarity=0.031 Sum_probs=132.0
Q ss_pred cEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeee-eEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeee
Q psy6127 223 KINSLDYSSDGSL-LISCSDDDQIIIYDCEQGTSK-NTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYV 300 (515)
Q Consensus 223 ~I~~l~~spd~~~-lasgs~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~ 300 (515)
.+.+++|++.+.. ..+-...+.|..++...+... ..+...-.....+++.+.+..++.+- ...+.|.+++++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d-~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD-SETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEE-CCCCEEEEEECCCCcEE
Confidence 4678999985444 445556788999998765322 22222334567899998777777765 35789999998754433
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCeEEEEec-CCCeeEEEECCCCCEEEEEE-CCCcEEEEE
Q psy6127 301 RYFPGHVRKVSSLNLSPVDDSFISGSY--DKTVRVWDLRQPNNVGMIQL-SGNKPIAAYDPEGLAFAIGV-NSDSIKLYD 376 (515)
Q Consensus 301 ~~~~~h~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d 376 (515)
............+++.|.+..|+.+.. .+.|...++........... -.....++++|++..|..+. ..+.|..+|
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 333344566789999997776666653 57888888765433333222 23367899999777666654 567888898
Q ss_pred eecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeec
Q psy6127 377 VRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSG 435 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 435 (515)
+..... ..+. ........++++..+ ..+.+-...+.|..++..+|+....+..
T Consensus 195 ~dG~~~---~~~~--~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 195 LDGTNR---QAVV--KGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp TTSCSC---EEEE--CSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCCCce---EEEe--cCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 864321 1111 112334457777533 3444445678899999888877666654
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.10 E-value=0.0019 Score=67.22 Aligned_cols=227 Identities=11% Similarity=0.050 Sum_probs=133.5
Q ss_pred CCeEEEEECCCCe-eeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCee-eEEecCCCCCeEEEEEcCCC
Q psy6127 242 DDQIIIYDCEQGT-SKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKY-VRYFPGHVRKVSSLNLSPVD 319 (515)
Q Consensus 242 dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~ 319 (515)
...|+..++.... ........-.....++|.+.+..++.+- ...+.|..++++.... ...+...-.....+++.+.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD-~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSD-VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEE-TTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEE-CCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 4678888887543 2222233345678999999888888775 3578899999876532 23333333578899999976
Q ss_pred CEEEEE-eCCCcEEEEEcCCCCeEEEE-ecCCCeeEEEECCCCCEEEEEEC--CCcEEEEEeecCCCCCceeeecCCCCC
Q psy6127 320 DSFISG-SYDKTVRVWDLRQPNNVGMI-QLSGNKPIAAYDPEGLAFAIGVN--SDSIKLYDVRSYDKGPFASFKCPGERG 395 (515)
Q Consensus 320 ~~l~s~-s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~ 395 (515)
+.|+.+ ...+.|.+.++......... ..-.....++++|.+..|..... .+.|...++..... ..+. ....
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~---~~l~--~~~~ 170 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FIII--NSEI 170 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEE--CSSC
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce---EEEE--eCCC
Confidence 655554 45788999998765544333 22334778999998666666553 35566555543221 1111 1123
Q ss_pred cCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q psy6127 396 CEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYK 474 (515)
Q Consensus 396 ~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~ 474 (515)
....++++++++..|+.+. ..+.|..+|+..........+...+ +..+++..+ .+.++-...+.|...|..+|+.
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~---P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH---PFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCC---ceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 4567999999877777665 4568888888654333222212222 456777655 3444444667899999877764
Q ss_pred EEEE
Q psy6127 475 VCVL 478 (515)
Q Consensus 475 ~~~~ 478 (515)
...+
T Consensus 247 ~~~i 250 (619)
T 3s94_A 247 LREI 250 (619)
T ss_dssp CEEC
T ss_pred cEEE
Confidence 4433
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.09 E-value=0.008 Score=57.19 Aligned_cols=246 Identities=14% Similarity=0.156 Sum_probs=129.8
Q ss_pred eeeEeeee-ccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEec---CCCCceeEEEEecCCCeEEEEEee
Q psy6127 209 RSYRVAKV-FRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTIN---SKKYGVDLIKFTHSKTTAIHASTK 284 (515)
Q Consensus 209 ~~~~~~~~-~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~~ 284 (515)
++|+.+.. .......+.++.|+| +..++ ++.++.|.. ..+.|+.-.... .+...+..+.+.+++. +++++
T Consensus 66 ~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-- 139 (327)
T 2xbg_A 66 QTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-- 139 (327)
T ss_dssp SSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE--
T ss_pred CCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC-EEEEe--
Confidence 34555432 122355789999986 44444 455665443 223333322222 2234567777776654 33333
Q ss_pred CCCeEEEEECCCCee-eEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEE--ecCCCeeEEEECCCCC
Q psy6127 285 VDATLRYLSLHDNKY-VRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMI--QLSGNKPIAAYDPEGL 361 (515)
Q Consensus 285 ~d~~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~s~~~~ 361 (515)
.++.|.. ..+.++. .....++...+..+++.|++..++.+...+..+-+|- .++.-..+ ........+.+++++.
T Consensus 140 ~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~ 217 (327)
T 2xbg_A 140 NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGR 217 (327)
T ss_dssp TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSC
T ss_pred CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCC
Confidence 3554432 1222322 2222345667899999998887766644333333442 12222222 2334577888899887
Q ss_pred EEEEEECCCcEEEEEeecCCCCCceeeecC-CCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCC
Q psy6127 362 AFAIGVNSDSIKLYDVRSYDKGPFASFKCP-GERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440 (515)
Q Consensus 362 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 440 (515)
.++. +.+|.++..+...+. ........ ......+..+.+.|++..++++ .++.+ .+....|+.-..+.......
T Consensus 218 ~~~~-~~~G~~~~s~~D~G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~ 292 (327)
T 2xbg_A 218 LWMI-VNGGKIAFSDPDNSE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVP 292 (327)
T ss_dssp EEEE-ETTTEEEEEETTEEE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSS
T ss_pred EEEE-eCCceEEEecCCCCC--eeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCC
Confidence 6654 467877766321111 00011111 1122357889999887766655 46666 44555565444443221122
Q ss_pred CCCEEEEEecCCCEEEEEeCCCcEEEEE
Q psy6127 441 ASPLEATFTPDSQFVASGSTDGQVHIWN 468 (515)
Q Consensus 441 ~~i~~~~~sp~g~~l~sgs~dg~I~iwd 468 (515)
..+..+.|.+++. +++++.+|.|.-++
T Consensus 293 ~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 293 SNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp SCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 3478888886555 55566788777665
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.06 E-value=0.01 Score=57.22 Aligned_cols=234 Identities=11% Similarity=0.072 Sum_probs=128.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeeEec---CCCCceeEEEEecC---CCeEEEEEee--CC----C
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGT-SKNTIN---SKKYGVDLIKFTHS---KTTAIHASTK--VD----A 287 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~s~~--~d----~ 287 (515)
-.....++|.|||++++ +..+|.|++++ .+++ .+..+. ........++++|+ +..++++... .+ +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999998554 56679999997 3454 222221 22356889999998 6666665431 13 5
Q ss_pred eEEEEECCCC-------eee-EEec-CCCCCeEEEEEcCCCCEEEEEeC-------------CCcEEEEEcCCC------
Q psy6127 288 TLRYLSLHDN-------KYV-RYFP-GHVRKVSSLNLSPVDDSFISGSY-------------DKTVRVWDLRQP------ 339 (515)
Q Consensus 288 ~v~vwd~~~~-------~~~-~~~~-~h~~~v~~l~~~~~~~~l~s~s~-------------dg~i~iwd~~~~------ 339 (515)
.|..|+...+ +.+ ..+. +.......++|.|||.+.++.+. .|.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 7778876654 111 1122 11123467999999986666432 245555555432
Q ss_pred ---CeEEEEecCCCeeEEEECC-CCCEEEEEECCCc-EEEEEeecCCC-------------CCceeeecCCCCCcCeEEE
Q psy6127 340 ---NNVGMIQLSGNKPIAAYDP-EGLAFAIGVNSDS-IKLYDVRSYDK-------------GPFASFKCPGERGCEWTGL 401 (515)
Q Consensus 340 ---~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~-i~i~d~~~~~~-------------~~~~~~~~~~~~~~~i~~l 401 (515)
..+....+ .....++|+| +++++++-...+. =.+.-+..+.. ..................+
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 11222222 2366799999 6665555332221 11221222110 0000111111123356788
Q ss_pred EEc-------CCCCEEEEEECCCcEEEEECCCC-cee--EEeeccccCCCCCEEEEEecCCCEEEEEe
Q psy6127 402 KFS-------PDGKLILVSTNGSIIRLFDAFNG-NCV--QSLSGVLNNNASPLEATFTPDSQFVASGS 459 (515)
Q Consensus 402 ~~s-------p~~~~l~~~s~dg~i~iwd~~~~-~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~sgs 459 (515)
+|. .+|.++++....+.|...++... +.. ..+. ......+..+++.|||.+.++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~--~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF--KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC--TTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec--cCCCCCeeEEEECCCCcEEEEEe
Confidence 884 46766666666778888888753 222 1221 11234588999999997666653
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.03 E-value=0.012 Score=56.97 Aligned_cols=253 Identities=11% Similarity=0.096 Sum_probs=155.7
Q ss_pred CCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCE
Q psy6127 242 DDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDS 321 (515)
Q Consensus 242 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 321 (515)
+..|.|-|+.++..+...... ..+.-.+|..+.+++-+ ..++.++|+++...+..+.-.. .|.-=.|-.+. .
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra---g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~ 118 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA---GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-T 118 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE---TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-E
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec---CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-e
Confidence 347888898876554322211 22344678777666654 7899999999999888876444 56556665433 3
Q ss_pred EEEEeCCCcEEEEEcCC-CCeEEEEecC-----CCeeEEEECCCCCEEEEEE-------CCCcEEEEEeecCCCCCceee
Q psy6127 322 FISGSYDKTVRVWDLRQ-PNNVGMIQLS-----GNKPIAAYDPEGLAFAIGV-------NSDSIKLYDVRSYDKGPFASF 388 (515)
Q Consensus 322 l~s~s~dg~i~iwd~~~-~~~~~~~~~~-----~~~~~~~~s~~~~~l~~g~-------~dg~i~i~d~~~~~~~~~~~~ 388 (515)
|+-.+ +..|.-|++.. ..+.+.+..+ ..+-....+++.++++..+ -.|.+.+|..+... .
T Consensus 119 l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------s 191 (494)
T 1bpo_A 119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------S 191 (494)
T ss_dssp EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------E
T ss_pred EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------c
Confidence 44433 57899999974 3556666433 2345567788999877543 23677888877633 2
Q ss_pred ecCCCCCcCeEEEEEcCCC---CEEEEEEC---CCcEEEEECCCC---c------eeEEeeccccCCCCCEEEEEecCCC
Q psy6127 389 KCPGERGCEWTGLKFSPDG---KLILVSTN---GSIIRLFDAFNG---N------CVQSLSGVLNNNASPLEATFTPDSQ 453 (515)
Q Consensus 389 ~~~~~~~~~i~~l~~sp~~---~~l~~~s~---dg~i~iwd~~~~---~------~~~~~~~~~~~~~~i~~~~~sp~g~ 453 (515)
....+|......+.+..+. ..+..+.. .+.+++.++... . ....+...........++..++...
T Consensus 192 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg 271 (494)
T 1bpo_A 192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD 271 (494)
T ss_dssp EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT
T ss_pred chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC
Confidence 2223454433333332111 23334443 378899988532 1 1111111222344567899999999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCCEEEEcC
Q psy6127 454 FVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFWIP 510 (515)
Q Consensus 454 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~dv~iW~~ 510 (515)
.++.-+.-|.+++||++++.++..-+- ...+|..-+-+....=++.-...+.|..+
T Consensus 272 viyviTK~G~i~lyDleTgt~i~~nrI-s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 272 VVFLITKYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred EEEEEecCceEEEEecccceeeeeecc-cCCceEEecccCCCCcEEEEccCceEEEE
Confidence 999999999999999999999987775 55667665555543334433444444443
No 301
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.00 E-value=0.0044 Score=59.75 Aligned_cols=235 Identities=10% Similarity=0.035 Sum_probs=124.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeE---e----cCCCCceeEEEEecC---CCeEEEEEeeC------
Q psy6127 222 DKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNT---I----NSKKYGVDLIKFTHS---KTTAIHASTKV------ 285 (515)
Q Consensus 222 ~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~~~s~~~------ 285 (515)
.....|+|.|+|+.|+.+...|.|++++.. ++.... + .........++++|+ +..++++....
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 456899999999834455678999999853 432211 1 122346789999996 56666654221
Q ss_pred CCeEEEEECCCC-----ee--e-EEecC---CCCCeEEEEEcCCCCEEEEEeC-------------CCcEEEEEcCCCC-
Q psy6127 286 DATLRYLSLHDN-----KY--V-RYFPG---HVRKVSSLNLSPVDDSFISGSY-------------DKTVRVWDLRQPN- 340 (515)
Q Consensus 286 d~~v~vwd~~~~-----~~--~-~~~~~---h~~~v~~l~~~~~~~~l~s~s~-------------dg~i~iwd~~~~~- 340 (515)
...|..++...+ .. + ..+.. .......++|.|||.+.++.+. .|.|.-+|....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666666432 11 1 11111 1112457999999975555433 2456666765320
Q ss_pred -----------eEEEEe-cCCCeeEEEECC-CCCEEEEEEC-CCcEEEEEeecCCCC-----------------------
Q psy6127 341 -----------NVGMIQ-LSGNKPIAAYDP-EGLAFAIGVN-SDSIKLYDVRSYDKG----------------------- 383 (515)
Q Consensus 341 -----------~~~~~~-~~~~~~~~~~s~-~~~~l~~g~~-dg~i~i~d~~~~~~~----------------------- 383 (515)
....+. .......++|+| +|+++++-.. ++.=.|.-+..+..-
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 111121 122367799999 5555444221 111122222211100
Q ss_pred ---CceeeecCCCCCcCeEEEEEcC-------CCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCC
Q psy6127 384 ---PFASFKCPGERGCEWTGLKFSP-------DGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQ 453 (515)
Q Consensus 384 ---~~~~~~~~~~~~~~i~~l~~sp-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 453 (515)
........ .+......+.|.. +|+++++....+.|...++..++..............+..+++.|||.
T Consensus 257 ~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 00000000 1123466788864 466666666778888888776644332221112233588999999998
Q ss_pred EEEEE
Q psy6127 454 FVASG 458 (515)
Q Consensus 454 ~l~sg 458 (515)
++++.
T Consensus 336 lyv~t 340 (353)
T 2g8s_A 336 LYVLT 340 (353)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66643
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.98 E-value=0.0082 Score=64.14 Aligned_cols=209 Identities=12% Similarity=0.042 Sum_probs=132.3
Q ss_pred cCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCC----eeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEEC
Q psy6127 220 NTDKINSLDYSSDGSLL-ISCSDDDQIIIYDCEQG----TSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSL 294 (515)
Q Consensus 220 h~~~I~~l~~spd~~~l-asgs~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~ 294 (515)
....+..++|++.+..| ++-...+.|+.+++... .....+.........+++.+.+..++++- ...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD-~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-SVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE-TTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEe-cCCCeEEEEeC
Confidence 34567899999855544 45455688999988742 22333443446678899999888888776 46889999998
Q ss_pred CCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCeEEEEecC-CCeeEEEECCCCCEEEEEE-CCC
Q psy6127 295 HDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSY--DKTVRVWDLRQPNNVGMIQLS-GNKPIAAYDPEGLAFAIGV-NSD 370 (515)
Q Consensus 295 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~-~dg 370 (515)
........+...-.....|++.|.+..|+.+.. .+.|...++............ .....+++++.+..|+.+. ..+
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 765444434344456899999998776666653 267888888765544444322 3477899998777776664 456
Q ss_pred cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEEee
Q psy6127 371 SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNGNCVQSLS 434 (515)
Q Consensus 371 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~ 434 (515)
.|..+++..... ..+...........+|++. +.+|+.+. ..+.|...+..+|+.+..+.
T Consensus 581 ~I~~~d~dG~~~---~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 581 SISSIDVNGGNR---KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEEEETTSCSC---EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred cEEEEecCCCce---EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 788888765321 1121111112233466664 33555554 56788888877776555543
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.95 E-value=0.0022 Score=61.89 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=120.4
Q ss_pred CceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCee--eEEec---CCCCCeEEEEEcCC---CCEEEEEeC-C-----C
Q psy6127 264 YGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKY--VRYFP---GHVRKVSSLNLSPV---DDSFISGSY-D-----K 329 (515)
Q Consensus 264 ~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~--~~~~~---~h~~~v~~l~~~~~---~~~l~s~s~-d-----g 329 (515)
.....++|.|++. ++++. .++.|.+++ +++. +..+. ........++++|+ +..|+.+.. . +
T Consensus 31 ~~P~~ia~~pdG~-l~V~e--~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAE--RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSC-EEEEE--TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCe-EEEEe--CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 4567999999997 44443 579999998 4432 22221 22456899999998 555554443 2 6
Q ss_pred cEEEEEcCCCCe-----E-EEEec----CCCeeEEEECCCCCEEEEEECC-------------CcEEEEEeecCC--CCC
Q psy6127 330 TVRVWDLRQPNN-----V-GMIQL----SGNKPIAAYDPEGLAFAIGVNS-------------DSIKLYDVRSYD--KGP 384 (515)
Q Consensus 330 ~i~iwd~~~~~~-----~-~~~~~----~~~~~~~~~s~~~~~l~~g~~d-------------g~i~i~d~~~~~--~~~ 384 (515)
.|..++...+.. + ..+.. .+....++|.|+|.+.++.+.. |.|.-++....- ..+
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 788888775421 1 11221 1234679999999776664321 344444433200 000
Q ss_pred -------ceeeecCCCCCcCeEEEEEcC-CCCEEEEEECCCcE------EEEECCCCc------------------eeEE
Q psy6127 385 -------FASFKCPGERGCEWTGLKFSP-DGKLILVSTNGSII------RLFDAFNGN------------------CVQS 432 (515)
Q Consensus 385 -------~~~~~~~~~~~~~i~~l~~sp-~~~~l~~~s~dg~i------~iwd~~~~~------------------~~~~ 432 (515)
..... ...+. ....++|+| ++..+++-...+.+ .+.-+..+. +...
T Consensus 186 f~~~~~~~~~i~-a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 186 FLGRRGARPEVY-SLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTCTTSCTTEE-EECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred ccCCCCCCccEE-EEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 00000 01111 234799999 56655443332221 122222222 1111
Q ss_pred eeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCe----E--EEEEcCCCCCCeEEEEECCCCCEEEEee
Q psy6127 433 LSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGY----K--VCVLDGDHPSAVQSLQFNPKYHMLASAC 502 (515)
Q Consensus 433 ~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~----~--~~~~~~~h~~~V~~l~~sp~~~~las~~ 502 (515)
+ .....+..++| .+|.++++....+.|...+++... . ...+.. ....+.++++.|||.+.++..
T Consensus 264 ~----~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 W----PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp C----TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-SSCCEEEEEECTTSCEEEEEC
T ss_pred c----CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-cCCCeeEEEECCCCcEEEEEe
Confidence 1 11123567777 467666665566778777765332 1 122222 236789999999998877765
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.95 E-value=0.005 Score=58.29 Aligned_cols=186 Identities=16% Similarity=0.217 Sum_probs=119.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECC----CCCE--EEEEE--C--CCcEEEEEeecCCCCCceee
Q psy6127 319 DDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDP----EGLA--FAIGV--N--SDSIKLYDVRSYDKGPFASF 388 (515)
Q Consensus 319 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~----~~~~--l~~g~--~--dg~i~i~d~~~~~~~~~~~~ 388 (515)
...++.....+-+.+||+ +|+.++.+.. +..+.+.+-| .|+. ++..+ . +++|.+|++..... .....
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeec
Confidence 456777777889999999 8888888765 3466665555 2322 33333 3 57899998853221 12222
Q ss_pred ecC--C--CCCcCeEEEEE--cCC-CC-EEEEEECCCcEEEEECC---C----CceeEEeeccccCCCCCEEEEEecCCC
Q psy6127 389 KCP--G--ERGCEWTGLKF--SPD-GK-LILVSTNGSIIRLFDAF---N----GNCVQSLSGVLNNNASPLEATFTPDSQ 453 (515)
Q Consensus 389 ~~~--~--~~~~~i~~l~~--sp~-~~-~l~~~s~dg~i~iwd~~---~----~~~~~~~~~~~~~~~~i~~~~~sp~g~ 453 (515)
... . .....+..+|+ +|. ++ ++++...+|.+..|++. . ++.++++... ..+..|...+...
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~~g 192 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDEYG 192 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETTTT
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCCCC
Confidence 110 0 11144557888 774 44 67888889999999883 3 3455665542 3478999999999
Q ss_pred EEEEEeCCCcEEEEECC-----CCeEEEEEcCCC-CCCeEEEEE--CCCCC-EEEEee-C--CEEEEcCC
Q psy6127 454 FVASGSTDGQVHIWNAE-----RGYKVCVLDGDH-PSAVQSLQF--NPKYH-MLASAC-S--NMAFWIPT 511 (515)
Q Consensus 454 ~l~sgs~dg~I~iwd~~-----~~~~~~~~~~~h-~~~V~~l~~--sp~~~-~las~~-~--dv~iW~~~ 511 (515)
.|+.+-++.-|..++.+ +++.+..+...+ ...+..|+. .++++ +|++++ + ...+|+..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999998777777754 456776664323 246888888 45555 555554 3 38888875
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.93 E-value=0.014 Score=54.39 Aligned_cols=231 Identities=13% Similarity=0.182 Sum_probs=143.8
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC-CeeeEEecCCC
Q psy6127 229 YSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD-NKYVRYFPGHV 307 (515)
Q Consensus 229 ~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~-~~~~~~~~~h~ 307 (515)
.+|..+.+|.-. ..++.++|+++.+.++.+... ..|.--.|-.+. .+.+++ +..|+-|++.. ..+.+.+..|.
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT---~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT---DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEEEE---SSEEEEEESSTTCCCEEEEECCG
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEEEc---CCcEEEEcccCCCCCceeeecch
Confidence 588888777765 688999999999888887765 467666776554 566666 88999999974 45666666553
Q ss_pred ----CCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCCeEEEEecCCCeeEEEECCCC-----CEEEEEEC---
Q psy6127 308 ----RKVSSLNLSPVDDSFISGSY-------DKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEG-----LAFAIGVN--- 368 (515)
Q Consensus 308 ----~~v~~l~~~~~~~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~-----~~l~~g~~--- 368 (515)
..|..-..+++.++++..+- .|.+.+|..+.+... .+..+. ..-..+-.+| ..++.+..
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ieGha-a~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHA-ASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-EECCSE-EEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc-eeeeee-eeeEEEecCCCCCCceEEEEEEecCC
Confidence 46777788888887655432 367888988765432 222111 1112232222 23444432
Q ss_pred CCcEEEEEeecC--CCCCc--eee--ec-CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCC
Q psy6127 369 SDSIKLYDVRSY--DKGPF--ASF--KC-PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNA 441 (515)
Q Consensus 369 dg~i~i~d~~~~--~~~~~--~~~--~~-~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 441 (515)
.+.+++.++... ...+. +.. .. +.....-.-++..|+....++.-+.-|.+++||+.++.++..-+-...
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d--- 302 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--- 302 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS---
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCC---
Confidence 258899998553 11111 111 11 122233344888999888999999999999999999999876554222
Q ss_pred CCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 442 SPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 442 ~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
.|...+.+....=++.....|.|.--.++
T Consensus 303 ~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 303 TIFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp CEEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred ceEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 25444444443334444466655544443
No 306
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.91 E-value=0.032 Score=58.09 Aligned_cols=284 Identities=10% Similarity=0.063 Sum_probs=161.3
Q ss_pred cCCcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCC
Q psy6127 220 NTDKINSLDYSSDGSLLISCSD--DDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDN 297 (515)
Q Consensus 220 h~~~I~~l~~spd~~~lasgs~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~ 297 (515)
.-.....+++.|...+|+.... .+.|...++.. .....+-..-.....+++.+++..++.+- ...+.|...|+...
T Consensus 121 ~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~P~GlalD~~~~~LY~aD-~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG-SERTTLVPNVGRANGLTIDYAKRRLYWTD-LDTNLIESSNMLGL 198 (628)
T ss_dssp SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSCSSEEEEEEETTTTEEEEEE-TTTTEEEEEETTSC
T ss_pred CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC-CceEEEECCCCCcceEEEccccCEEEEEE-CCCCEEEEEcCCCC
Confidence 3455789999996556655542 46788888764 33333333456688999999999988887 36789999998754
Q ss_pred eeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC--C-----------------------Cee
Q psy6127 298 KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS--G-----------------------NKP 352 (515)
Q Consensus 298 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~-----------------------~~~ 352 (515)
.. ..+.........+++.. +..+++-...+.|...|..+++....+... . ...
T Consensus 199 ~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~ 276 (628)
T 4a0p_A 199 NR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCS 276 (628)
T ss_dssp SC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCS
T ss_pred ce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcc
Confidence 33 33333334466788764 444444445788888887666544333110 0 000
Q ss_pred EEEE----------CC-------CC-------CEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCC
Q psy6127 353 IAAY----------DP-------EG-------LAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGK 408 (515)
Q Consensus 353 ~~~~----------s~-------~~-------~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~ 408 (515)
.+|+ .| ++ .+++.+ ....|+-..+..... .....+......+.+++|++.+.
T Consensus 277 ~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s-~~~~i~~i~l~~~~~---~~~~l~~~~~~~~~~ld~d~~~~ 352 (628)
T 4a0p_A 277 HLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFS-QKSAINRMVIDEQQS---PDIILPIHSLRNVRAIDYDPLDK 352 (628)
T ss_dssp SEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEE-ETTEEEEECCCTTCC---CCEECCCTTCSCEEEEEEETTTT
T ss_pred hhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeee-ccceEEEEecccccC---ceEEEEehhcCCceEEEEecCCC
Confidence 0111 11 11 111111 122333333322110 01111122234567899999777
Q ss_pred EEEEEE-CCCcEEEEECCCCceeEEeeccc---cCCCCCEEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEEcCCCC
Q psy6127 409 LILVST-NGSIIRLFDAFNGNCVQSLSGVL---NNNASPLEATFTPDSQFVA-SGSTDGQVHIWNAERGYKVCVLDGDHP 483 (515)
Q Consensus 409 ~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~---~~~~~i~~~~~sp~g~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~ 483 (515)
.|+.+. ..+.|+.++.........+.... .....+..+++...++.|+ +-+..+.|.+.+++ |+....+.....
T Consensus 353 ~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l 431 (628)
T 4a0p_A 353 QLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQ 431 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTT
T ss_pred eEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCC
Confidence 777665 46778888875433222232100 1123478999999877555 55567889999985 555444432245
Q ss_pred CCeEEEEECC-CCCEEEEeeCC-E-EEEcCCC
Q psy6127 484 SAVQSLQFNP-KYHMLASACSN-M-AFWIPTL 512 (515)
Q Consensus 484 ~~V~~l~~sp-~~~~las~~~d-v-~iW~~~~ 512 (515)
....++++.| .|.+..+-.+. - +||....
T Consensus 432 ~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~ 463 (628)
T 4a0p_A 432 DRPRAVVVNPEKGYMYFTNLQERSPKIERAAL 463 (628)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTEEEEEEEET
T ss_pred CceeeEEEecCCCeEEEeecCCCCCeEEEEeC
Confidence 6789999999 66666554333 2 6776544
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.90 E-value=0.02 Score=55.35 Aligned_cols=232 Identities=13% Similarity=0.181 Sum_probs=144.9
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC-CeeeEEecCC
Q psy6127 228 DYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD-NKYVRYFPGH 306 (515)
Q Consensus 228 ~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~-~~~~~~~~~h 306 (515)
-.+|..+.+|.-. ..++.|+|+++.+.++.+...+ .|.--.|-.+. .+.+++ +..|+-|++.. ..+++.+..|
T Consensus 72 IMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~lVT---~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT---DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEEEEC---SSEEEEEESSSSCCCEEEEECC
T ss_pred eeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEEEEc---CCeeEEecccCCCCchhheecc
Confidence 3678777777665 6899999999998888877654 56666776554 556665 88999999974 3566666655
Q ss_pred C----CCeEEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCCeEEEEecCCCeeEEEECCCC-----CEEEEEEC--
Q psy6127 307 V----RKVSSLNLSPVDDSFISGS-------YDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEG-----LAFAIGVN-- 368 (515)
Q Consensus 307 ~----~~v~~l~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~-----~~l~~g~~-- 368 (515)
. ..|..-..+++.++++..+ -.|.+.+|..+.+.....-.|. ..-..+-.+| ..++.+..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGha--a~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA--ASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSE--EEEEEEECTTCSSEEEEEEEEECST
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeee--eeeEEEecCCCCCCceEEEEEEecC
Confidence 3 4677778888888766443 2467889988766433221111 1111222222 23444443
Q ss_pred -CCcEEEEEeecC--CCCCc--eeeec---CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCC
Q psy6127 369 -SDSIKLYDVRSY--DKGPF--ASFKC---PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNN 440 (515)
Q Consensus 369 -dg~i~i~d~~~~--~~~~~--~~~~~---~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 440 (515)
.+.+++.++... ...+. +.... +.....-..++..|+....++.-+.-|.+++||+.++.++..-+-..
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~--- 300 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG--- 300 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS---
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccC---
Confidence 378999998653 11111 11111 12223334489999988899999999999999999999987655322
Q ss_pred CCCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 441 ASPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 441 ~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
..|...+.+....=++.....|.|.--.++
T Consensus 301 ~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 301 ETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp SCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred CceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 225544444444444444566655544443
No 308
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.82 E-value=0.0025 Score=59.83 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=108.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCeEEEEecCC---------CeeEEEE---CCCCCEEEEEEC---
Q psy6127 305 GHVRKVSSLNLSPVDDSFISGS-YDKTVRVWDLRQPNNVGMIQLSG---------NKPIAAY---DPEGLAFAIGVN--- 368 (515)
Q Consensus 305 ~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~---s~~~~~l~~g~~--- 368 (515)
.......+++|.+....|+.++ ..++|..||...+..... .... .+..+.+ +|+++++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 3344456789988666666666 789999999976654443 2222 2467899 688877776442
Q ss_pred ----------CCcEEEEEee---cCCCCCceeeec-CCC-------CCcCeEEEEEcCCCCEEEEEECC-CcEEEEECCC
Q psy6127 369 ----------SDSIKLYDVR---SYDKGPFASFKC-PGE-------RGCEWTGLKFSPDGKLILVSTNG-SIIRLFDAFN 426 (515)
Q Consensus 369 ----------dg~i~i~d~~---~~~~~~~~~~~~-~~~-------~~~~i~~l~~sp~~~~l~~~s~d-g~i~iwd~~~ 426 (515)
+..+..||+. +++......+.. ... .......++..++|+..++++.. +.|...+..
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd- 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD- 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-
Confidence 5779999998 544221111110 000 22347799999999988888877 887777754
Q ss_pred CceeEEeec-c--ccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q psy6127 427 GNCVQSLSG-V--LNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERG 472 (515)
Q Consensus 427 ~~~~~~~~~-~--~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~ 472 (515)
|+....+.. . .......+.++++|+|..|++....|.+..+|+.+.
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 333333221 1 111223679999999998888877999999998754
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.81 E-value=0.027 Score=54.18 Aligned_cols=241 Identities=12% Similarity=0.049 Sum_probs=130.1
Q ss_pred CCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCe-eeEEec---CCCCCeEEEEEcCC---CCEEEEEeC----C---
Q psy6127 263 KYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNK-YVRYFP---GHVRKVSSLNLSPV---DDSFISGSY----D--- 328 (515)
Q Consensus 263 ~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~-~~~~~~---~h~~~v~~l~~~~~---~~~l~s~s~----d--- 328 (515)
-.....++|.|++. ++++. .++.|+++| .+++ .+..+. ........++++|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~pdG~-l~V~e--~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTE--RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEE--TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCe-EEEEe--CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 34578999999986 44443 579999997 3454 222221 22356889999998 555554433 3
Q ss_pred -CcEEEEEcCCC--Ce-----E-EEEec--CCCeeEEEECCCCCEEEEEECC-------------CcEEEEEeecCC--C
Q psy6127 329 -KTVRVWDLRQP--NN-----V-GMIQL--SGNKPIAAYDPEGLAFAIGVNS-------------DSIKLYDVRSYD--K 382 (515)
Q Consensus 329 -g~i~iwd~~~~--~~-----~-~~~~~--~~~~~~~~~s~~~~~l~~g~~d-------------g~i~i~d~~~~~--~ 382 (515)
+.|..|+.... .. + ..+.. .+....++|.|+|.++++.+.. |.|.-++....- .
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 56777877654 11 1 11221 1235679999999877764321 344444432210 0
Q ss_pred CCc--eeeecCCCCCcCeEEEEEcC-CCCEEEEEECCC---cEEEEECCCCce---------------eEEeeccccCCC
Q psy6127 383 GPF--ASFKCPGERGCEWTGLKFSP-DGKLILVSTNGS---IIRLFDAFNGNC---------------VQSLSGVLNNNA 441 (515)
Q Consensus 383 ~~~--~~~~~~~~~~~~i~~l~~sp-~~~~l~~~s~dg---~i~iwd~~~~~~---------------~~~~~~~~~~~~ 441 (515)
.+. ..+. ...+. ....++|+| +++.+++-...+ .|.+.. .+.. ............
T Consensus 184 npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ 259 (354)
T 3a9g_A 184 NPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETW 259 (354)
T ss_dssp SSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred CCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence 000 0111 11222 234899999 565444432221 233322 2210 000000001123
Q ss_pred CCEEEEEe-------cCCCEEEEEeCCCcEEEEECCCC-eEE--EEEcCCCCCCeEEEEECCCCCEEEEee-CCE-----
Q psy6127 442 SPLEATFT-------PDSQFVASGSTDGQVHIWNAERG-YKV--CVLDGDHPSAVQSLQFNPKYHMLASAC-SNM----- 505 (515)
Q Consensus 442 ~i~~~~~s-------p~g~~l~sgs~dg~I~iwd~~~~-~~~--~~~~~~h~~~V~~l~~sp~~~~las~~-~dv----- 505 (515)
.+..++|. .+|.++++.-..+.|...++... +.. ..+.......+.++++.|||.+.++.. .+.
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~~~~G~g~~~ 339 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTSNRDGRGSLR 339 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEECTTSSSSCCC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEeCCCCCcCCC
Confidence 36778883 56777776666778888888753 322 233221346799999999998777765 233
Q ss_pred ----EEEcCC
Q psy6127 506 ----AFWIPT 511 (515)
Q Consensus 506 ----~iW~~~ 511 (515)
+||.+.
T Consensus 340 ~~~g~i~ri~ 349 (354)
T 3a9g_A 340 AGDDKILKIV 349 (354)
T ss_dssp TTCSCEEEEE
T ss_pred CCCCEEEEEe
Confidence 788764
No 310
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.75 E-value=0.023 Score=54.39 Aligned_cols=196 Identities=12% Similarity=0.132 Sum_probs=112.4
Q ss_pred EEEEEEcCCCCEEEEE------------eCCCeEEEEECCCC--ee-eeEecC-----CCCceeEEEEec--CCC-eEEE
Q psy6127 224 INSLDYSSDGSLLISC------------SDDDQIIIYDCEQG--TS-KNTINS-----KKYGVDLIKFTH--SKT-TAIH 280 (515)
Q Consensus 224 I~~l~~spd~~~lasg------------s~dg~i~iwd~~~~--~~-~~~~~~-----~~~~v~~~~~~~--~~~-~l~~ 280 (515)
.-.+...|+|..++++ ..+|.|.++|.++. +. ...+.+ .......+.+.+ ++. ++++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3455566766444443 16899999998732 21 112222 234567777766 344 4555
Q ss_pred EEee-CCCeEEEEECCCC--e--eeEEecCC-CCCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEEcC
Q psy6127 281 ASTK-VDATLRYLSLHDN--K--YVRYFPGH-VRKVSSLNLSPVDDSFISGSY-----------------DKTVRVWDLR 337 (515)
Q Consensus 281 ~s~~-~d~~v~vwd~~~~--~--~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~-----------------dg~i~iwd~~ 337 (515)
+... .+.+|.+|+++.+ . .+..+.+. -...+++.+.++|.+.++... .|.|.-+|.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 5432 2567888876543 2 23344432 246889999999987776541 234444444
Q ss_pred CCCeEEEEecCCCeeEEEECCCCCEEEEEE-CCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcC-CCCEEEEEEC
Q psy6127 338 QPNNVGMIQLSGNKPIAAYDPEGLAFAIGV-NSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSP-DGKLILVSTN 415 (515)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~~~~l~~~s~ 415 (515)
++.......-...+.++|+||++.+.++. ..+.|..|++..... ....... ......-.+++++ +|++.+++..
T Consensus 211 -~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~--l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 -NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT--LTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp -TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC--EEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred -CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc--EecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 44333333334478899999998877765 568899999874211 1111111 1134567899999 5887776653
Q ss_pred C-CcEEEEEC
Q psy6127 416 G-SIIRLFDA 424 (515)
Q Consensus 416 d-g~i~iwd~ 424 (515)
+ +.|..|+.
T Consensus 287 ~g~~v~~~~P 296 (355)
T 3sre_A 287 NGMRIFFYDA 296 (355)
T ss_dssp CHHHHHSCCT
T ss_pred CceEEEEECC
Confidence 3 34444443
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.62 E-value=0.03 Score=53.77 Aligned_cols=242 Identities=10% Similarity=0.050 Sum_probs=129.2
Q ss_pred CceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEE---e----cCCCCCeEEEEEcCC---CCEEEEEe-C-----
Q psy6127 264 YGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRY---F----PGHVRKVSSLNLSPV---DDSFISGS-Y----- 327 (515)
Q Consensus 264 ~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~---~----~~h~~~v~~l~~~~~---~~~l~s~s-~----- 327 (515)
.....++|.|++..++++. ..+.|++++.. ++.... + .........++++|+ +..|+.+. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e--~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITL--RGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTTCCEEEEE--TTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCCCEEEEEe--CCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 3568999999998555544 57999999853 332111 1 122345789999996 55444443 2
Q ss_pred --CCcEEEEEcCCCC----eEEEE-e-c------CCCeeEEEECCCCCEEEEEECC-------------CcEEEEEeecC
Q psy6127 328 --DKTVRVWDLRQPN----NVGMI-Q-L------SGNKPIAAYDPEGLAFAIGVNS-------------DSIKLYDVRSY 380 (515)
Q Consensus 328 --dg~i~iwd~~~~~----~~~~~-~-~------~~~~~~~~~s~~~~~l~~g~~d-------------g~i~i~d~~~~ 380 (515)
...|..|+..... ....+ . . .+....++|.|+|.++++.+.. |.|.-++....
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 2356666665431 11111 1 1 1224569999999665554332 34555554321
Q ss_pred C--CCCc-------eeeecCCCCCcCeEEEEEcC-CCCEEEEEECC--CcEEEEECCCCcee----E-------------
Q psy6127 381 D--KGPF-------ASFKCPGERGCEWTGLKFSP-DGKLILVSTNG--SIIRLFDAFNGNCV----Q------------- 431 (515)
Q Consensus 381 ~--~~~~-------~~~~~~~~~~~~i~~l~~sp-~~~~l~~~s~d--g~i~iwd~~~~~~~----~------------- 431 (515)
- ..+. .... ...+ .....++|+| +|+ |.++... +.=.|.-+..+... .
T Consensus 175 ~p~~npf~~~~~~~~~i~-a~G~-rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIW-SYGI-RNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp CCTTCTTTTSTTSCTTEE-EECC-SEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCCcCCCCCCccEE-EEcC-cCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 0 0000 0000 0122 2355899999 554 4444322 11122222222110 0
Q ss_pred ----Eeecc------ccCCCCCEEEEEec-------CCCEEEEEeCCCcEEEEECCCCeEEEE--EcCCCCCCeEEEEEC
Q psy6127 432 ----SLSGV------LNNNASPLEATFTP-------DSQFVASGSTDGQVHIWNAERGYKVCV--LDGDHPSAVQSLQFN 492 (515)
Q Consensus 432 ----~~~~~------~~~~~~i~~~~~sp-------~g~~l~sgs~dg~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s 492 (515)
..... ..+...+..++|.. +|.++++.-..+.|...+++.++.... +.......+.++++.
T Consensus 252 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp CCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred ccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 00000 00112356777764 466777666778888888876654432 221134579999999
Q ss_pred CCCCEEEEee-CCEEEEcCC
Q psy6127 493 PKYHMLASAC-SNMAFWIPT 511 (515)
Q Consensus 493 p~~~~las~~-~dv~iW~~~ 511 (515)
|||.+.++.+ .+.+||.+.
T Consensus 332 pdG~lyv~td~~~g~I~ri~ 351 (353)
T 2g8s_A 332 PDGYLYVLTDESSGELLKVS 351 (353)
T ss_dssp TTSCEEEEECSTTEEEEEEE
T ss_pred CCCcEEEEEeCCCCEEEEEe
Confidence 9999877655 568898764
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.58 E-value=0.00052 Score=72.71 Aligned_cols=209 Identities=12% Similarity=0.050 Sum_probs=123.7
Q ss_pred CcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC
Q psy6127 222 DKINSLDYSSDGSLLISCS-DDDQIIIYDCEQ----GTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD 296 (515)
Q Consensus 222 ~~I~~l~~spd~~~lasgs-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~ 296 (515)
..+..++|++.+..|+.+. ..+.|+.+++.. ......+.........+++.+.+..++++- ...+.|.++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD-~~~~~I~v~d~dg 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-SVLGTVSVADTKG 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECC-TTTSCEEEEBSSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEe-ccCCeEEEEecCC
Confidence 4567889998766666554 457899999875 222222222223456688887666666654 3578899999876
Q ss_pred CeeeEEecCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCeEEEEec-CCCeeEEEECCCCCEEEEE-ECCCcE
Q psy6127 297 NKYVRYFPGHVRKVSSLNLSPVDDSFISGSY--DKTVRVWDLRQPNNVGMIQL-SGNKPIAAYDPEGLAFAIG-VNSDSI 372 (515)
Q Consensus 297 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g-~~dg~i 372 (515)
......+.........+++.|.+..|+.+.. .+.|..+++........... -.....++++|++..|+.+ +..+.|
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 5444333333345678899997665555443 26788877754332222211 1235679999976555554 456789
Q ss_pred EEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeec
Q psy6127 373 KLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSG 435 (515)
Q Consensus 373 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 435 (515)
..+++..... ..+...........++++..+ ..+++....+.|..++..+|+.+..+..
T Consensus 565 ~~~d~dG~~~---~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 565 SSIDVNGGNR---KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EEECSSSSCC---EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEEccCCCce---EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 9998864321 111111111122235666544 3444445678899999888887776653
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.54 E-value=0.025 Score=54.14 Aligned_cols=186 Identities=11% Similarity=0.147 Sum_probs=108.4
Q ss_pred CeEEEEEcCCCCEEEEE------------eCCCcEEEEEcCCCC-eEEEEecC--------CCeeEEEECC--CCC--EE
Q psy6127 309 KVSSLNLSPVDDSFISG------------SYDKTVRVWDLRQPN-NVGMIQLS--------GNKPIAAYDP--EGL--AF 363 (515)
Q Consensus 309 ~v~~l~~~~~~~~l~s~------------s~dg~i~iwd~~~~~-~~~~~~~~--------~~~~~~~~s~--~~~--~l 363 (515)
..-++...|+|..++++ ..+|.|.++|.++.. ....+... -....+.+.+ ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34556677766544444 268999999987431 12222221 1344566544 453 34
Q ss_pred EEEEC--CCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEEC-----------------CCcEEEEEC
Q psy6127 364 AIGVN--SDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTN-----------------GSIIRLFDA 424 (515)
Q Consensus 364 ~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~-----------------dg~i~iwd~ 424 (515)
++-.. +.++.+|++.................-...+.+.+.++|.+.++... .|.+..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 56889999876432221111223344456789999999987766541 234555544
Q ss_pred CCCceeEEeeccccCCCCCEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeE--EEEEcCCCCCCeEEEEECC-CCCEEE
Q psy6127 425 FNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGS-TDGQVHIWNAER-GYK--VCVLDGDHPSAVQSLQFNP-KYHMLA 499 (515)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs-~dg~I~iwd~~~-~~~--~~~~~~~h~~~V~~l~~sp-~~~~la 499 (515)
++......+. ...+.++|+||++.|+.+. ..+.|+.|++.. ++. ...+. ..+..-.++..+ +|.+.+
T Consensus 211 --~~~~~~~~~l----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 211 --NDVRVVAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp --TCCEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEEE
T ss_pred --CeEEEeecCC----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEEE
Confidence 4332222221 2268999999998887765 568899999863 432 22332 345678899999 598877
Q ss_pred Eee
Q psy6127 500 SAC 502 (515)
Q Consensus 500 s~~ 502 (515)
++.
T Consensus 283 a~~ 285 (355)
T 3sre_A 283 GCH 285 (355)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
No 314
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.48 E-value=0.064 Score=53.58 Aligned_cols=264 Identities=16% Similarity=0.116 Sum_probs=155.0
Q ss_pred EEEEeCCCeEEEEECCCCeeeeEecCCC-------------------------Cce--eEEEEe---cCCCeEEEEEeeC
Q psy6127 236 LISCSDDDQIIIYDCEQGTSKNTINSKK-------------------------YGV--DLIKFT---HSKTTAIHASTKV 285 (515)
Q Consensus 236 lasgs~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~v--~~~~~~---~~~~~l~~~s~~~ 285 (515)
+.||+..|.|+|+-+.+++.++.+.... +.. ..+++. .||+++++-- ..
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNd-ka 151 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFIND-KA 151 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEE-TT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEec-CC
Confidence 6788889999999999988887763210 011 122222 2455555443 45
Q ss_pred CCeEEEEECCCCeeeEEec-CCCCCeEEEEEc--CCCCEEEEEeC-------CCcE------------EEEEcCCCCeEE
Q psy6127 286 DATLRYLSLHDNKYVRYFP-GHVRKVSSLNLS--PVDDSFISGSY-------DKTV------------RVWDLRQPNNVG 343 (515)
Q Consensus 286 d~~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~l~s~s~-------dg~i------------~iwd~~~~~~~~ 343 (515)
+..|...+++..++-+.+. .....+..++|. |+-.+++.++. ||.. ...|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 7788888888877665543 345678888886 67778888774 3331 112333444433
Q ss_pred EEecCCCeeEEEECCCCCEEEEEECCC---------------cEEEEEeec-------CCCCC-----ceeeecCC----
Q psy6127 344 MIQLSGNKPIAAYDPEGLAFAIGVNSD---------------SIKLYDVRS-------YDKGP-----FASFKCPG---- 392 (515)
Q Consensus 344 ~~~~~~~~~~~~~s~~~~~l~~g~~dg---------------~i~i~d~~~-------~~~~~-----~~~~~~~~---- 392 (515)
.....+....+..+++|.+.++.+.+. .+.+++... ++... ...+....
T Consensus 232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 333344444566788888887766432 355666432 11000 00110000
Q ss_pred --------CCCcCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCC------ce---eEEeeccccCCCCCEEEEEecCCCE
Q psy6127 393 --------ERGCEWTGLKFSPDGKLILVST-NGSIIRLFDAFNG------NC---VQSLSGVLNNNASPLEATFTPDSQF 454 (515)
Q Consensus 393 --------~~~~~i~~l~~sp~~~~l~~~s-~dg~i~iwd~~~~------~~---~~~~~~~~~~~~~i~~~~~sp~g~~ 454 (515)
.......++.++|||+++++++ .+.++.++|++.- +. ...+.......-.....+|.++|.-
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNA 391 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCce
Confidence 0011223688999999998877 4789999998742 11 0111111112223688999999955
Q ss_pred EEEEeCCCcEEEEECCCC----------eEEEEEcCCCCCCeEEEEE------CCCCCEEEEee
Q psy6127 455 VASGSTDGQVHIWNAERG----------YKVCVLDGDHPSAVQSLQF------NPKYHMLASAC 502 (515)
Q Consensus 455 l~sgs~dg~I~iwd~~~~----------~~~~~~~~~h~~~V~~l~~------sp~~~~las~~ 502 (515)
..+-.-|..|.-|++... ..+.++.. |-. +-.+.- .|||++|++..
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv-~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV-HYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC-SSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeecccc-ccC-CcccccCCCccCCCCccEEEEec
Confidence 555668999999998653 45666654 433 333332 67899998875
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.48 E-value=0.077 Score=50.48 Aligned_cols=241 Identities=12% Similarity=0.094 Sum_probs=128.6
Q ss_pred ccccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--eEe----cCCCCceeEEEEecC---CCeEEEE-EeeCC
Q psy6127 217 FRENTDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSK--NTI----NSKKYGVDLIKFTHS---KTTAIHA-STKVD 286 (515)
Q Consensus 217 ~~~h~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~l~~~-s~~~d 286 (515)
+...-...+.|+|.|||+++++--..|.|++++..+++.. ..+ .........++++|+ +..+++. +...+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3344556789999999997776655899999987655432 222 123467889999996 4445443 32235
Q ss_pred CeEEEEECCCC----------eee-EEec-CCCCCeEEEEEcCCCCEEEEEeC-------------CCcEEEEEcCCC--
Q psy6127 287 ATLRYLSLHDN----------KYV-RYFP-GHVRKVSSLNLSPVDDSFISGSY-------------DKTVRVWDLRQP-- 339 (515)
Q Consensus 287 ~~v~vwd~~~~----------~~~-~~~~-~h~~~v~~l~~~~~~~~l~s~s~-------------dg~i~iwd~~~~-- 339 (515)
+.|.-|....+ +.+ ..+. .....-..+.|.|||.+.++.+. .|.|.-.+....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 56766766541 111 1222 11223467999999987776542 244544454422
Q ss_pred -------CeEEEEecCCCeeEEEECCCCCEEEEEE-CCCcEEEEEeecCCCC-------------CceeeecCCCCCcCe
Q psy6127 340 -------NNVGMIQLSGNKPIAAYDPEGLAFAIGV-NSDSIKLYDVRSYDKG-------------PFASFKCPGERGCEW 398 (515)
Q Consensus 340 -------~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~-------------~~~~~~~~~~~~~~i 398 (515)
..+.... ......++|+|+|.++++-. .++.=.+.-+..+..- ..........+....
T Consensus 187 ~~nPf~~~~i~a~G-~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 187 PGNPFPGSPVYSYG-HRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp TTCSSTTCCEEEBC-CSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCCCCeEEeeC-CCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 1122222 22366799999887666532 2332333333322110 000000011111244
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCceeEE-eeccccCCCCCEEEEEecCCCEEEEEe
Q psy6127 399 TGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQS-LSGVLNNNASPLEATFTPDSQFVASGS 459 (515)
Q Consensus 399 ~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~sgs 459 (515)
..++|. +|..+...-..+.|....+........ ..........+..++..|||.++++..
T Consensus 266 ~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 577776 355555555566676666654432111 001112234588999999997666543
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.40 E-value=0.011 Score=55.36 Aligned_cols=229 Identities=12% Similarity=0.101 Sum_probs=116.9
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCeeeeE--ecCCCCceeEEEEecCCCeEEEEEeeC----CCeEEEEECCCCe-
Q psy6127 232 DGSLLISCS-DD-----DQIIIYDCEQGTSKNT--INSKKYGVDLIKFTHSKTTAIHASTKV----DATLRYLSLHDNK- 298 (515)
Q Consensus 232 d~~~lasgs-~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~~~----d~~v~vwd~~~~~- 298 (515)
++.+++.|+ .+ ..+.+||..+++-... +.........+ .. +..+++.+|.. ...+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SL-HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EE-TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EE-CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 4688899887653321 11111111222 22 34555554422 2468999988765
Q ss_pred --eeEE--ecCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCCeEEEEecCCC--eeEEEECCCCCEEEEEE
Q psy6127 299 --YVRY--FPGHVRKVSSLNLSPVDDSFISGSYD-----KTVRVWDLRQPNNVGMIQLSGN--KPIAAYDPEGLAFAIGV 367 (515)
Q Consensus 299 --~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~~g~ 367 (515)
-... +......-..+.+ +++.++.|+.+ ..+.+||..+.+....-..... ...++. .+++.++.|+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 3222 2211122222222 46677777654 3588999988765544322221 112222 2677777776
Q ss_pred CC-----CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCceeEEeeccc
Q psy6127 368 NS-----DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG-----SIIRLFDAFNGNCVQSLSGVL 437 (515)
Q Consensus 368 ~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~ 437 (515)
.+ ..+.+||..+...... ............+.+ +++.++.|+.+ ..+.+||+.+.+....-. ..
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p 241 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNV---TPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS-MT 241 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC-CS
T ss_pred CCCCcccceEEEEeCCCCcEEeC---CCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC-CC
Confidence 54 4588888876432211 111111111222333 56666677653 468999998876543221 11
Q ss_pred cCCCCCEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeE
Q psy6127 438 NNNASPLEATFTPDSQFVASGSTD-----GQVHIWNAERGYK 474 (515)
Q Consensus 438 ~~~~~i~~~~~sp~g~~l~sgs~d-----g~I~iwd~~~~~~ 474 (515)
...... .++ .-++++++.|+.+ ..+.+||+++.+-
T Consensus 242 ~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 242 TPRCYV-GAT-VLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp SCCBSC-EEE-EETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred Ccccce-eEE-EECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 111112 222 2367777777765 3578899887653
No 317
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.39 E-value=0.03 Score=52.43 Aligned_cols=212 Identities=9% Similarity=0.026 Sum_probs=121.2
Q ss_pred EecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCC--------------CcEEEEEc
Q psy6127 271 FTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYD--------------KTVRVWDL 336 (515)
Q Consensus 271 ~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--------------g~i~iwd~ 336 (515)
|++++..+++.....++.++..+.+.... ..+... . +--+++++.+|+-+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSC-EEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCC-EEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 45678888887655567777777654443 333211 1 34557889888776543 36777787
Q ss_pred CCCCeEEEEecCCCeeEEEECCCCCEEEEEE--CCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEE
Q psy6127 337 RQPNNVGMIQLSGNKPIAAYDPEGLAFAIGV--NSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVST 414 (515)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s 414 (515)
...+....... ....++++++.|+... .++.-.||-+........ .+... . + ..++|+++.|+-.+
T Consensus 96 dg~~~~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~---~--~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 96 NGHGSTVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNH---Y--L--FTCNTSDRYFYYNN 163 (302)
T ss_dssp TSCCCEEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESS---C--C--CCSEEETTEEEEEC
T ss_pred CCCcceEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCC---C--c--eEeeEECCEEEEEe
Confidence 77654333221 2336788999998876 455555665554322211 22211 1 1 34677888888766
Q ss_pred C-CCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC--CcEEEEECCCCeEEEEEcCCCCCCeEEEEE
Q psy6127 415 N-GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD--GQVHIWNAERGYKVCVLDGDHPSAVQSLQF 491 (515)
Q Consensus 415 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 491 (515)
. ...|...++..+.....+.+ .....++|++++|+-...+ ..|..-+++.+. ...+.. ..+ ..|
T Consensus 164 ~g~~~Iy~~~l~g~~~~~l~~~-------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~---~~~--~~~ 230 (302)
T 3s25_A 164 PKNGQLYRYDTASQSEALFYDC-------NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE---ANI--EHY 230 (302)
T ss_dssp TTTCCEEEEETTTTEEEEEECS-------CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC---SCE--EEE
T ss_pred CCCceEEEEECCCCCEEEEeCC-------CccceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC---CCc--ceE
Confidence 5 57888888876654433321 1223467999988876543 356666665544 333322 233 347
Q ss_pred CCCCCEEEEee--CCEEEEcCCC
Q psy6127 492 NPKYHMLASAC--SNMAFWIPTL 512 (515)
Q Consensus 492 sp~~~~las~~--~dv~iW~~~~ 512 (515)
+|++.+|.-++ +.-.|+.++.
T Consensus 231 ~~~g~~Iy~~~~~~~~~i~~~~~ 253 (302)
T 3s25_A 231 NVYGSLIFYQRGGDNPALCVVKN 253 (302)
T ss_dssp EEETTEEEEEECSSSCEEEEEET
T ss_pred EECCCEEEEEECCCCcEEEEEEC
Confidence 77777776542 2245554443
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.34 E-value=0.015 Score=54.43 Aligned_cols=228 Identities=11% Similarity=0.151 Sum_probs=114.9
Q ss_pred CEEEEEeCC----CeEEEEECCCCeeeeE--ecCCCCceeEEEEecCCCeEEEEEeeC----CCeEEEEECCCCeeeEE-
Q psy6127 234 SLLISCSDD----DQIIIYDCEQGTSKNT--INSKKYGVDLIKFTHSKTTAIHASTKV----DATLRYLSLHDNKYVRY- 302 (515)
Q Consensus 234 ~~lasgs~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~~~----d~~v~vwd~~~~~~~~~- 302 (515)
.+++.|+.+ ..+..||..+.+-... +......-..+.+ +..+++.+|.. -..+.+||..+.+-...
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 344445432 3578888877653322 1111111112222 44555554422 24688999888764332
Q ss_pred -ecCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCCeEEEEecCCC--eeEEEECCCCCEEEEEECC-----
Q psy6127 303 -FPGHVRKVSSLNLSPVDDSFISGSYDK-----TVRVWDLRQPNNVGMIQLSGN--KPIAAYDPEGLAFAIGVNS----- 369 (515)
Q Consensus 303 -~~~h~~~v~~l~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~~g~~d----- 369 (515)
+.........+.+ ++..++.|+.++ .+.+||+.+.+....-....+ ...++. .+++.++.|+.+
T Consensus 94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTE
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCc
Confidence 2211112222222 467777777653 477889888765544322211 112222 256677776542
Q ss_pred --CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCceeEEeeccccCCCC
Q psy6127 370 --DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG-----SIIRLFDAFNGNCVQSLSGVLNNNAS 442 (515)
Q Consensus 370 --g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~ 442 (515)
..+.+||..+......... + ........+.+ +++.++.|+.+ ..+.+||..+.+....- .......
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~--p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~- 243 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEM--S-TRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA-DMNMCRR- 243 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCC--S-SCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC-CCSSCCB-
T ss_pred cccEEEEEeCCCCcEEECCCC--c-cccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCC-CCCCccc-
Confidence 3578888876432211111 1 11111222333 56677777653 46899999877544322 1111111
Q ss_pred CEEEEEecCCCEEEEEeCCC-----cEEEEECCCCeEE
Q psy6127 443 PLEATFTPDSQFVASGSTDG-----QVHIWNAERGYKV 475 (515)
Q Consensus 443 i~~~~~sp~g~~l~sgs~dg-----~I~iwd~~~~~~~ 475 (515)
-..++ ..++++++.|+.++ .+.+||+.+.+-.
T Consensus 244 ~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 244 NAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp SCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred cCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 11222 23677777777653 4899999887644
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.31 E-value=0.16 Score=50.47 Aligned_cols=107 Identities=13% Similarity=0.168 Sum_probs=64.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--eEecC------CCCceeEEEEecC---CCeEEEEEeeC----
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSK--NTINS------KKYGVDLIKFTHS---KTTAIHASTKV---- 285 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~s~~~---- 285 (515)
-...+.|+|.|||+++++-...+.|++++..+++.. ..+.. .......++|+|+ +..++++....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999987776544457888886555432 22221 2456779999996 66666665320
Q ss_pred -------CCeEEEEECCCC-------eeeE-EecC-CCCCeEEEEEcCCCCEEEEEeC
Q psy6127 286 -------DATLRYLSLHDN-------KYVR-YFPG-HVRKVSSLNLSPVDDSFISGSY 327 (515)
Q Consensus 286 -------d~~v~vwd~~~~-------~~~~-~~~~-h~~~v~~l~~~~~~~~l~s~s~ 327 (515)
...|.-++...+ +.+. .+.. .......++|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666655322 1111 1221 1234789999999997776543
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.30 E-value=0.013 Score=54.87 Aligned_cols=213 Identities=13% Similarity=0.142 Sum_probs=109.0
Q ss_pred CeEEEEECCCCeeeEE--ecCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCC---eEEEEecCCC--eeEE
Q psy6127 287 ATLRYLSLHDNKYVRY--FPGHVRKVSSLNLSPVDDSFISGSYD-----KTVRVWDLRQPN---NVGMIQLSGN--KPIA 354 (515)
Q Consensus 287 ~~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~---~~~~~~~~~~--~~~~ 354 (515)
..+.+||..+++-... +.........+. .++..++.|+.+ ..+.+||..+.+ ....-....+ ...+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 4688899887764322 221111122222 346677777755 468999998877 4443222211 1122
Q ss_pred EECCCCCEEEEEECC-----CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC-----CcEEEEEC
Q psy6127 355 AYDPEGLAFAIGVNS-----DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG-----SIIRLFDA 424 (515)
Q Consensus 355 ~~s~~~~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d-----g~i~iwd~ 424 (515)
+. .+++.++.|+.+ ..+.+||..+......... +.. ...-..+.+ +++.++.|+.+ ..+.+||.
T Consensus 109 ~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 109 TT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM--QTA-REGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp EE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC--SSC-CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred EE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC--CCC-cccceEEEE--CCEEEEECCCCCCcccceEEEEeC
Confidence 22 266777777643 3578888766432221111 111 111222223 66666676643 46899998
Q ss_pred CCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeEEEEEcCCCC-CCeEEEEECCCCCEE
Q psy6127 425 FNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD-----GQVHIWNAERGYKVCVLDGDHP-SAVQSLQFNPKYHML 498 (515)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l 498 (515)
.+.+....-. ...... -.+++ ..++++++.|+.+ ..+.+||+.+.+-...-..... .....+.+ +++++
T Consensus 183 ~~~~W~~~~~-~p~~r~-~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~ 257 (301)
T 2vpj_A 183 HTGHWTNVTP-MATKRS-GAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLY 257 (301)
T ss_dssp TTTEEEEECC-CSSCCB-SCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred CCCcEEeCCC-CCcccc-cceEE-EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEE
Confidence 8876543311 111111 11222 2357777777754 4689999988765443221111 11222222 56676
Q ss_pred EEeeC-------CEEEEcCCC
Q psy6127 499 ASACS-------NMAFWIPTL 512 (515)
Q Consensus 499 as~~~-------dv~iW~~~~ 512 (515)
+.|+. ++.+||++.
T Consensus 258 v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 258 AIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp EECCBCSSSBEEEEEEEETTT
T ss_pred EEcCcCCCcccccEEEEcCCC
Confidence 76652 356666653
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.28 E-value=0.019 Score=53.84 Aligned_cols=224 Identities=12% Similarity=0.105 Sum_probs=114.8
Q ss_pred CeEEEEEee-CCCeEEEEECCCCeeeEE--ecCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCCeEEEEecC
Q psy6127 276 TTAIHASTK-VDATLRYLSLHDNKYVRY--FPGHVRKVSSLNLSPVDDSFISGSYD----KTVRVWDLRQPNNVGMIQLS 348 (515)
Q Consensus 276 ~~l~~~s~~-~d~~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~ 348 (515)
+.+++.+|. ....+.+||..+++-... +......-..+. -++..++.|+.+ ..+.+||..+.+....-...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 445555442 256789999988764322 221112222222 246677777755 66889999888655443222
Q ss_pred CC--eeEEEECCCCCEEEEEECC------CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEEC-----
Q psy6127 349 GN--KPIAAYDPEGLAFAIGVNS------DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTN----- 415 (515)
Q Consensus 349 ~~--~~~~~~s~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~----- 415 (515)
.+ -..++ ..+++.++.|+.+ ..+.+||..+......... +. ....-..+.+ +++.++.|+.
T Consensus 90 ~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~-~r~~~~~~~~--~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 90 TPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM--LT-QRCSHGMVEA--NGLIYVCGGSLGNNV 163 (306)
T ss_dssp SCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC--SS-CCBSCEEEEE--TTEEEEECCEESCTT
T ss_pred ccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC--cC-CcceeEEEEE--CCEEEEECCCCCCCC
Confidence 21 11222 2267777777754 4588888876432111111 11 1111122222 5566666652
Q ss_pred ----CCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeEEEEEcCC-CCCC
Q psy6127 416 ----GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD-----GQVHIWNAERGYKVCVLDGD-HPSA 485 (515)
Q Consensus 416 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~-h~~~ 485 (515)
-..+.+||..+.+....-. ...... -.+++.. ++++++.|+.+ ..+.+||+.+.+-...-... ....
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCP-MIEARK-NHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECC-CSSCCB-SCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred cccccceEEEeCCCCCeEEECCC-ccchhh-cceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 3458899998875433221 111111 1222222 66777777653 46899999887544322111 1112
Q ss_pred eEEEEECCCCCEEEEee-------CCEEEEcCCC
Q psy6127 486 VQSLQFNPKYHMLASAC-------SNMAFWIPTL 512 (515)
Q Consensus 486 V~~l~~sp~~~~las~~-------~dv~iW~~~~ 512 (515)
...+.+ ++++++.|+ .++.+||++.
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 223333 566777665 2366666654
No 322
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.27 E-value=0.078 Score=49.55 Aligned_cols=236 Identities=8% Similarity=0.013 Sum_probs=129.2
Q ss_pred cCCCCEEEEEe--CCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeC------------CCeEEEEECC
Q psy6127 230 SSDGSLLISCS--DDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKV------------DATLRYLSLH 295 (515)
Q Consensus 230 spd~~~lasgs--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~------------d~~v~vwd~~ 295 (515)
++++.+++... .++.+...+.+ |.....+... .+--++++++.++.+.... ...|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 34666666654 24666666654 3334444322 2345689999999887422 3568888887
Q ss_pred CCeeeEEecCCCCCeEEEEEcCCCCEEEEEe--C--CCcEEEEEcCCCCeEEEEecCCCeeEEEECCCCCEEEEEEC-CC
Q psy6127 296 DNKYVRYFPGHVRKVSSLNLSPVDDSFISGS--Y--DKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVN-SD 370 (515)
Q Consensus 296 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s--~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg 370 (515)
.++....... . ...|+++++.|+-.. . +..|..-++........... . . ..++|+++.|...+. ..
T Consensus 97 g~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~-~-~--~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 97 GHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH-Y-L--FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp SCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS-C-C--CCSEEETTEEEEECTTTC
T ss_pred CCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC-C-c--eEeeEECCEEEEEeCCCc
Confidence 7654333221 1 236777899888776 2 34566666664443333332 2 2 456788888887665 45
Q ss_pred cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC--CcEEEEECCCCceeEEeeccccCCCCCEEEEE
Q psy6127 371 SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG--SIIRLFDAFNGNCVQSLSGVLNNNASPLEATF 448 (515)
Q Consensus 371 ~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 448 (515)
.|...++..... ..+ . .. .. ...++|++.+|+-...+ ..|..-++.... ...+.. . .+ ..|
T Consensus 168 ~Iy~~~l~g~~~---~~l-~-~~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~---~--~~--~~~ 230 (302)
T 3s25_A 168 QLYRYDTASQSE---ALF-Y-DC---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE---A--NI--EHY 230 (302)
T ss_dssp CEEEEETTTTEE---EEE-E-CS---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC---S--CE--EEE
T ss_pred eEEEEECCCCCE---EEE-e-CC---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC---C--Cc--ceE
Confidence 666666554321 111 1 11 12 23456999998877644 356555655443 233321 1 12 348
Q ss_pred ecCCCEEEEEeC--CCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee
Q psy6127 449 TPDSQFVASGST--DGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC 502 (515)
Q Consensus 449 sp~g~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~ 502 (515)
+|++++|+-++. .+.|..-+++.... ..+.. . .+.. +++.+.++.-.+
T Consensus 231 ~~~g~~Iy~~~~~~~~~i~~~~~DG~~r-~~l~~-~--~~~~--i~i~~d~Iy~td 280 (302)
T 3s25_A 231 NVYGSLIFYQRGGDNPALCVVKNDGTGF-KELAK-G--EFCN--INVTSQYVYFTD 280 (302)
T ss_dssp EEETTEEEEEECSSSCEEEEEETTSCCC-EEEEE-S--CEEE--EEECSSEEEEEE
T ss_pred EECCCEEEEEECCCCcEEEEEECCCCcc-EEeeC-C--ccce--EEEeCCEEEEEE
Confidence 888998876532 35677777654332 22221 1 2333 344555665554
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.24 E-value=0.042 Score=53.15 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=100.7
Q ss_pred EEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC-----
Q psy6127 270 KFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGH----VRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPN----- 340 (515)
Q Consensus 270 ~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~----- 340 (515)
....++..++++. ++.||.-++..+..-+.+.-. -..|..+..+|+|++|+..+. ..|.|-.+..+.
T Consensus 27 ~~~~n~t~i~~a~---~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ---DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEETTTTEEEEEE---TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCC
T ss_pred EEEcCCCEEEEEE---CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcc
Confidence 3455667777775 788888887754434444322 235788999999999988764 678888876321
Q ss_pred -------eEEEEec-------CCCeeEEEECCC---CCEEEEEECCCcEEEEEeecCCCCCceeeec------CCCCCcC
Q psy6127 341 -------NVGMIQL-------SGNKPIAAYDPE---GLAFAIGVNSDSIKLYDVRSYDKGPFASFKC------PGERGCE 397 (515)
Q Consensus 341 -------~~~~~~~-------~~~~~~~~~s~~---~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~ 397 (515)
..+.+.. ..++..+.|+|- +..|++-..|+.|++||+......+. .+.. .......
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND 181 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence 1223332 345888999994 56899999999999999987443333 2211 1223367
Q ss_pred eEEEEEcCCCCEEEEEE--CCCcEEEE
Q psy6127 398 WTGLKFSPDGKLILVST--NGSIIRLF 422 (515)
Q Consensus 398 i~~l~~sp~~~~l~~~s--~dg~i~iw 422 (515)
+.+++|.+++-.|...+ ++|.|+-.
T Consensus 182 v~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 182 ITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 88999999887777755 77887643
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.17 E-value=0.038 Score=51.96 Aligned_cols=230 Identities=12% Similarity=0.146 Sum_probs=114.7
Q ss_pred EEEEEeCCCeEEEEECCCCeeee-EecCCCCceeEEEEecCCCeEEEEEee------CC----CeEEEEECCCCeeeEE-
Q psy6127 235 LLISCSDDDQIIIYDCEQGTSKN-TINSKKYGVDLIKFTHSKTTAIHASTK------VD----ATLRYLSLHDNKYVRY- 302 (515)
Q Consensus 235 ~lasgs~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~~------~d----~~v~vwd~~~~~~~~~- 302 (515)
+++.|+ ..+..||..+++-.. .+..............++ .+++.+|. .. ..+..||..+++-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 578999998876432 122111222222333344 45555442 11 2378889888764322
Q ss_pred -ecCCCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEEcCCCCeEEEEecCCC-eeEEEECCCCCEEEEEEC-C--
Q psy6127 303 -FPGHVRKVSSLNLSPVDDSFISGSYD--------KTVRVWDLRQPNNVGMIQLSGN-KPIAAYDPEGLAFAIGVN-S-- 369 (515)
Q Consensus 303 -~~~h~~~v~~l~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~-~~~~~~s~~~~~l~~g~~-d-- 369 (515)
+......-..+.+ ++..++.|+.+ ..+.+||..+.+....-..+.+ ....+...+++.++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence 1111111122222 46666777642 4588999988764433222211 111222246667777765 2
Q ss_pred ---CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCCceeEEeeccccCCC
Q psy6127 370 ---DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGS-----IIRLFDAFNGNCVQSLSGVLNNNA 441 (515)
Q Consensus 370 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~ 441 (515)
..+.+||..+.......... .....-..+.+ +++.++.|+.++ .+.+||..+.+....-. ......
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~ 235 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQ---TARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA-FPQERS 235 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCS---SCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC-CSSCCB
T ss_pred cccceEEEEeCCCCeEEECCCCC---CchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCC-CCCccc
Confidence 46888888764322111111 11111122333 666777777543 58899988775443221 111111
Q ss_pred CCEEEEEecCCCEEEEEeCC--------------CcEEEEECCCCeEEEE
Q psy6127 442 SPLEATFTPDSQFVASGSTD--------------GQVHIWNAERGYKVCV 477 (515)
Q Consensus 442 ~i~~~~~sp~g~~l~sgs~d--------------g~I~iwd~~~~~~~~~ 477 (515)
-.+++ .-++++++.|+.+ ..+.+||+.+.+-...
T Consensus 236 -~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 236 -SLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp -SCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred -ceeEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 11222 2356777777753 2477889888765544
No 325
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.16 E-value=0.36 Score=51.49 Aligned_cols=261 Identities=10% Similarity=0.117 Sum_probs=149.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe-cCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCee
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTI-NSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKY 299 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~ 299 (515)
...|.++.-..+| +|..|..+| +..||-.+-+..... ......|.++.-..++ .+.+++ +.-+..||..+.+.
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT---~~Gl~~yd~~~~~f 94 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGT---DNGILVYNYRADRY 94 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEE---TTEEEEEETTTTEE
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEe---CCCeEEEeCCCCEE
Confidence 5679999888887 456677777 556764321111100 1123457787766654 556555 45688999887754
Q ss_pred eEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-----cCCCeeEEEECCCCCEEEEEECCCcEEE
Q psy6127 300 VRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-----LSGNKPIAAYDPEGLAFAIGVNSDSIKL 374 (515)
Q Consensus 300 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~g~~dg~i~i 374 (515)
..........|.++.. .++ .|..++.+ -+..+|..+++...... ....+.++..+.+|.+.+ |+.+ -+..
T Consensus 95 ~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~ 169 (758)
T 3ott_A 95 EQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCR 169 (758)
T ss_dssp CCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEE
T ss_pred ECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhh
Confidence 4321112345777654 344 56666665 68889987765443211 123467777787777655 4444 4667
Q ss_pred EEeecCCCCCceeeecCC---CCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecC
Q psy6127 375 YDVRSYDKGPFASFKCPG---ERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPD 451 (515)
Q Consensus 375 ~d~~~~~~~~~~~~~~~~---~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 451 (515)
|+..... ........ .....|.++...+++..|..|+. +-+..+|..+++... +.... ...|.++...++
T Consensus 170 ~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l~--~~~i~~i~~d~~ 242 (758)
T 3ott_A 170 YIPSNGK---FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAFH--NNSIKSLALDGN 242 (758)
T ss_dssp EETTTTE---EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEEE--EEEEEEEEECTT
T ss_pred CccCCCc---eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCCC--CCeEEEEEEcCC
Confidence 7755422 11111111 11234788888887776556664 458889987765432 21111 112777877777
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEcC------CCCCCeEEEEECCCCCEEEEe
Q psy6127 452 SQFVASGSTDGQVHIWNAERGYKVCVLDG------DHPSAVQSLQFNPKYHMLASA 501 (515)
Q Consensus 452 g~~l~sgs~dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~las~ 501 (515)
|.+.+ |+.+ -+.+++..+++....... -....|.++....+|.+-+..
T Consensus 243 g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 243 GDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp CCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred CCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 77555 4444 488898876654322211 023468999888887655444
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.12 E-value=0.044 Score=51.25 Aligned_cols=227 Identities=10% Similarity=0.038 Sum_probs=117.0
Q ss_pred CEEEEEeC--CCeEEEEECCCCeeeeE--ecCCCCceeEEEEecCCCeEEEEEee---CCCeEEEEECCCCeeeEE--ec
Q psy6127 234 SLLISCSD--DDQIIIYDCEQGTSKNT--INSKKYGVDLIKFTHSKTTAIHASTK---VDATLRYLSLHDNKYVRY--FP 304 (515)
Q Consensus 234 ~~lasgs~--dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~~---~d~~v~vwd~~~~~~~~~--~~ 304 (515)
.+++.|+. ...+.+||..+++-... +........++. . +..+++.+|. ....+.+||..+++-... +.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555654 35788999887654322 221112222222 2 3455555542 236788999988764332 22
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCCeEEEEecCCC--eeEEEECCCCCEEEEEEC--------
Q psy6127 305 GHVRKVSSLNLSPVDDSFISGSYD------KTVRVWDLRQPNNVGMIQLSGN--KPIAAYDPEGLAFAIGVN-------- 368 (515)
Q Consensus 305 ~h~~~v~~l~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~~g~~-------- 368 (515)
........+.+ +++.++.|+.+ ..+.+||..+.+....-....+ ...++. .+++.++.|+.
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 11122222222 56777777765 4588999988765443222211 112222 36667777653
Q ss_pred -CCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCceeEEeeccccCCCC
Q psy6127 369 -SDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG-----SIIRLFDAFNGNCVQSLSGVLNNNAS 442 (515)
Q Consensus 369 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~ 442 (515)
...+.+||..+......... ......-..+.+ +++.++.|+.+ ..+.+||..+.+-... .........
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~ 240 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPM---IEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-SPMPWKGVT 240 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEEC-CCCSCCBSC
T ss_pred ccceEEEeCCCCCeEEECCCc---cchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-CCCCCCccc
Confidence 34588888876532211111 111111222223 56666666543 4688999987754332 111111111
Q ss_pred CEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeE
Q psy6127 443 PLEATFTPDSQFVASGSTD-----GQVHIWNAERGYK 474 (515)
Q Consensus 443 i~~~~~sp~g~~l~sgs~d-----g~I~iwd~~~~~~ 474 (515)
...+.+ ++++++.|+.+ ..+.+||..+.+-
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 223333 67788888754 4689999988643
No 327
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.10 E-value=0.54 Score=52.44 Aligned_cols=168 Identities=13% Similarity=0.125 Sum_probs=100.2
Q ss_pred cEEEEEcCCCCeEEEEecCCC--eeEEE---ECC-CCCEEEEEE----------CCCcEEEEEeecCCCCCceeeecCCC
Q psy6127 330 TVRVWDLRQPNNVGMIQLSGN--KPIAA---YDP-EGLAFAIGV----------NSDSIKLYDVRSYDKGPFASFKCPGE 393 (515)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~~~~--~~~~~---~s~-~~~~l~~g~----------~dg~i~i~d~~~~~~~~~~~~~~~~~ 393 (515)
.|++.|..+.+.+..+..... +.+++ |.. ...++++|+ ..|.|.+|++...+ ..+.....
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k----L~lv~~~~ 883 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK----LQTVAEKE 883 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE----EEEEEEEE
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE----EEEEEEEE
Confidence 477888888887776655433 33333 332 246888887 35789999998322 12222223
Q ss_pred CCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEE--EECCC
Q psy6127 394 RGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHI--WNAER 471 (515)
Q Consensus 394 ~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~i--wd~~~ 471 (515)
..+++++++-- +| +|++|- .+.+++|++...+.++.-.....+ +..+.....+.+++.|..-..|.+ |+...
T Consensus 884 v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~---i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~ 957 (1158)
T 3ei3_A 884 VKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNN---IMALYLKTKGDFILVGDLMRSVLLLAYKPME 957 (1158)
T ss_dssp ESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCC---SCEEEEEEETTEEEEEESSBCEEEEEEETTT
T ss_pred cCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeecccc---EEEEEEeccCCEEEEEEhhheEEEEEEEcCC
Confidence 45677777643 44 555544 478999999876544411111111 333344445788999987666666 55556
Q ss_pred CeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCCEEEE
Q psy6127 472 GYKVCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFW 508 (515)
Q Consensus 472 ~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~dv~iW 508 (515)
++....-...+...++++.+-.++ .++.++....+|
T Consensus 958 ~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~ 993 (1158)
T 3ei3_A 958 GNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLF 993 (1158)
T ss_dssp TEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEE
T ss_pred CeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEE
Confidence 665555544467789999987665 555577554443
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.10 E-value=0.041 Score=51.34 Aligned_cols=214 Identities=14% Similarity=0.162 Sum_probs=107.0
Q ss_pred CeEEEEECCCCeeeEE--ecCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCCeEEEEecCCC--eeEEEEC
Q psy6127 287 ATLRYLSLHDNKYVRY--FPGHVRKVSSLNLSPVDDSFISGSYD-----KTVRVWDLRQPNNVGMIQLSGN--KPIAAYD 357 (515)
Q Consensus 287 ~~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~--~~~~~~s 357 (515)
..+..||+.+.+-... +......-..+.+ ++..++.|+.+ ..+.+||..+.+....-....+ -..++.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~- 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV- 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence 4678888887754322 1111111122222 46677777754 3588999988765544322211 112222
Q ss_pred CCCCEEEEEECCC-----cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEEC-------CCcEEEEECC
Q psy6127 358 PEGLAFAIGVNSD-----SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTN-------GSIIRLFDAF 425 (515)
Q Consensus 358 ~~~~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~-------dg~i~iwd~~ 425 (515)
.++..++.|+.++ .+.+||..+..... .............+.+ +++.++.|+. -..+.+||..
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~ 181 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH---VAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNAT 181 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE---ECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETT
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEee---cCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCC
Confidence 2677777777553 46777776543211 1111111111222222 5566666653 2458899998
Q ss_pred CCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEE
Q psy6127 426 NGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD-----GQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLAS 500 (515)
Q Consensus 426 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las 500 (515)
+.+....-. ...... -.+++. -++++++.|+.+ ..+.+||+.+++-...-.......-.+++. -++++++.
T Consensus 182 ~~~W~~~~~-~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~ 257 (302)
T 2xn4_A 182 TNEWTYIAE-MSTRRS-GAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVV 257 (302)
T ss_dssp TTEEEEECC-CSSCCB-SCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEE
T ss_pred CCcEEECCC-Cccccc-cccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEE
Confidence 776443211 111111 122222 367777777754 369999998876544322111111111222 25666666
Q ss_pred eeC-------CEEEEcCCC
Q psy6127 501 ACS-------NMAFWIPTL 512 (515)
Q Consensus 501 ~~~-------dv~iW~~~~ 512 (515)
|+. ++.+||+..
T Consensus 258 GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 258 GGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp CCBCSSSBCCCEEEEETTT
T ss_pred CCcCCCcccccEEEEcCCC
Confidence 652 367777654
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.09 E-value=0.064 Score=51.93 Aligned_cols=148 Identities=14% Similarity=0.182 Sum_probs=95.8
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC-----CCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCC-------
Q psy6127 317 PVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS-----GNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGP------- 384 (515)
Q Consensus 317 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~------- 384 (515)
.+|..++.+- ++.||.-++.....-+.+..+ ..+..+..+|+|++||.. .+..|.|..+..+....
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCccccccc
Confidence 3455555443 467777777754444555443 247789999999999987 46689999887432111
Q ss_pred -ce--eeecC---CCCCcCeEEEEEcCC---CCEEEEEECCCcEEEEECCCCc--eeEEee------ccccCCCCCEEEE
Q psy6127 385 -FA--SFKCP---GERGCEWTGLKFSPD---GKLILVSTNGSIIRLFDAFNGN--CVQSLS------GVLNNNASPLEAT 447 (515)
Q Consensus 385 -~~--~~~~~---~~~~~~i~~l~~sp~---~~~l~~~s~dg~i~iwd~~~~~--~~~~~~------~~~~~~~~i~~~~ 447 (515)
.+ .+... .....+|..+.|+|- +..|++-..|+.|++||+.... +. .+. +.......+.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 11 11211 113568999999994 5689999999999999997532 11 222 1222235588999
Q ss_pred EecCCCEEEEEe--CCCcEEEE
Q psy6127 448 FTPDSQFVASGS--TDGQVHIW 467 (515)
Q Consensus 448 ~sp~g~~l~sgs--~dg~I~iw 467 (515)
|.+++-.|+..+ .+|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999887777655 77887653
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.03 E-value=0.034 Score=61.79 Aligned_cols=235 Identities=12% Similarity=0.132 Sum_probs=135.7
Q ss_pred CCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCE
Q psy6127 242 DDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDS 321 (515)
Q Consensus 242 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 321 (515)
..+|.|.|+.++..+...+ -...+.-.+|..+.+++-+ ..++.++|+++...+..+.- ..+|.-=.|-.+..
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra---g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~- 118 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA---GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT- 118 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec---CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-
Confidence 3478888888765442211 1122334567776555543 78999999999888777664 34566667764433
Q ss_pred EEEEeCCCcEEEEEcCCC-CeEEEEecC-----CCeeEEEECCCCCEEEEEE-------CCCcEEEEEeecCCCCCceee
Q psy6127 322 FISGSYDKTVRVWDLRQP-NNVGMIQLS-----GNKPIAAYDPEGLAFAIGV-------NSDSIKLYDVRSYDKGPFASF 388 (515)
Q Consensus 322 l~s~s~dg~i~iwd~~~~-~~~~~~~~~-----~~~~~~~~s~~~~~l~~g~-------~dg~i~i~d~~~~~~~~~~~~ 388 (515)
|+..+ +..|.-|++... .+.+.+..+ ..+.....+++.++++..+ -.|.+.+|..+....+.
T Consensus 119 l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~---- 193 (1630)
T 1xi4_A 119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---- 193 (1630)
T ss_pred eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh----
Confidence 33332 467999999642 333333222 2355566788888877543 34788899887643221
Q ss_pred ecCCCCCcCeEEEEEc--CC-CCEEEEEE---CCCcEEEEECCCC---cee------EEeeccccCCCCCEEEEEecCCC
Q psy6127 389 KCPGERGCEWTGLKFS--PD-GKLILVST---NGSIIRLFDAFNG---NCV------QSLSGVLNNNASPLEATFTPDSQ 453 (515)
Q Consensus 389 ~~~~~~~~~i~~l~~s--p~-~~~l~~~s---~dg~i~iwd~~~~---~~~------~~~~~~~~~~~~i~~~~~sp~g~ 453 (515)
..+|......+... +. ...+..+. ..+.++|.++... .+. ..+.........+.++..++...
T Consensus 194 --iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g 271 (1630)
T 1xi4_A 194 --IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD 271 (1630)
T ss_pred --hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC
Confidence 12332222222221 11 12222222 1367888887542 111 11111111233457788888888
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEEC
Q psy6127 454 FVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFN 492 (515)
Q Consensus 454 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 492 (515)
.++.-+.-|.+++||+.+|.++..-+- ...+|...+-+
T Consensus 272 ~iy~itk~G~~~~~d~~t~~~i~~~ri-s~~~iF~~~~~ 309 (1630)
T 1xi4_A 272 VVFLITKYGYIHLYDLETGTCIYMNRI-SGETIFVTAPH 309 (1630)
T ss_pred EEEEEecCceEEEEecccchhhhhccc-cCCceEEeccC
Confidence 899999999999999999988876554 44455444443
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.93 E-value=0.064 Score=50.23 Aligned_cols=230 Identities=9% Similarity=0.039 Sum_probs=116.5
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCeeeeE--ecCCCCceeEEEEecCCCeEEEEEee--------CCCeEEEEECCCC
Q psy6127 232 DGSLLISCSDD----DQIIIYDCEQGTSKNT--INSKKYGVDLIKFTHSKTTAIHASTK--------VDATLRYLSLHDN 297 (515)
Q Consensus 232 d~~~lasgs~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~~--------~d~~v~vwd~~~~ 297 (515)
++.+++.|+.+ ..+.+||..+++-... +.........+. . +..+++.+|. ....+.+||..+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--E-CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 45566666532 4688888877654322 111111111222 2 3455555442 1246889998887
Q ss_pred eeeEE--ecCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCCeEEEEecCCC--eeEEEECCCCCEEEEEEC
Q psy6127 298 KYVRY--FPGHVRKVSSLNLSPVDDSFISGSYD-----KTVRVWDLRQPNNVGMIQLSGN--KPIAAYDPEGLAFAIGVN 368 (515)
Q Consensus 298 ~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~~g~~ 368 (515)
+-... +.........+.+ +++.++.|+.+ ..+.+||..+.+....-..... ..+++.. ++..++.|+.
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~ 177 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGF 177 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCC
Confidence 54322 2211122222223 46677776643 4588899987765443222211 1122222 6677777765
Q ss_pred C-----CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCceeEEeecccc
Q psy6127 369 S-----DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG-----SIIRLFDAFNGNCVQSLSGVLN 438 (515)
Q Consensus 369 d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~ 438 (515)
+ ..+.+||..+......... .........+.+ +++.++.|+.+ ..+.+||+.+.+....-. ...
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~ 251 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MKH 251 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC-CSS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCC---CCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC-CCC
Confidence 4 4588888876432211111 111112223333 56666777653 568999998875443221 111
Q ss_pred CCCCCEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeEE
Q psy6127 439 NNASPLEATFTPDSQFVASGSTD-----GQVHIWNAERGYKV 475 (515)
Q Consensus 439 ~~~~i~~~~~sp~g~~l~sgs~d-----g~I~iwd~~~~~~~ 475 (515)
... -.+++. -++++++.|+.+ ..+.+||+.+.+-.
T Consensus 252 ~r~-~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 252 RRS-ALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp CCB-SCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred Ccc-ceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 111 122222 367777777754 35888998876543
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.90 E-value=0.042 Score=61.11 Aligned_cols=200 Identities=12% Similarity=0.189 Sum_probs=121.1
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC-CeeeEEecCC-
Q psy6127 229 YSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD-NKYVRYFPGH- 306 (515)
Q Consensus 229 ~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~-~~~~~~~~~h- 306 (515)
.+|..+.+|.-. ..++.|+|+++.+.++.+...+ +|.--.|-... .+.+++ +..|+-|++.. ..++..+..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT---DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEc---CCeEEEeccCCCCccHHHHhcch
Confidence 677777776654 6899999999888777766543 46666666543 455665 88999999964 3455555545
Q ss_pred ---CCCeEEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCCeEEEEecCCCeeEEEE---CCCCCEEEEEEC---CC
Q psy6127 307 ---VRKVSSLNLSPVDDSFISGS-------YDKTVRVWDLRQPNNVGMIQLSGNKPIAAY---DPEGLAFAIGVN---SD 370 (515)
Q Consensus 307 ---~~~v~~l~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~~g~~---dg 370 (515)
...|..-..+++.++++..| -.|.+.+|..+.+.....-.+...-..+.. .+....++.+.. .+
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~ 226 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence 45677778888888766443 347788888776533211111110000111 111223333322 36
Q ss_pred cEEEEEeecC-C-CCCce--e--eec-CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEee
Q psy6127 371 SIKLYDVRSY-D-KGPFA--S--FKC-PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLS 434 (515)
Q Consensus 371 ~i~i~d~~~~-~-~~~~~--~--~~~-~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 434 (515)
.++|.++... . ..+.. . +.. +.....-..++..++....+..-+.-|.+.+||+.+|.++..-.
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 8888888653 1 11110 1 111 11112223378888888888889999999999999998875443
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.89 E-value=0.024 Score=54.46 Aligned_cols=237 Identities=8% Similarity=0.016 Sum_probs=112.4
Q ss_pred CCCEEEEEeCC-CeEEEEECCC--Ce--eeeEec-CCCCceeEEEEecCCCeEEEEEee-C--------CCeEEEEECCC
Q psy6127 232 DGSLLISCSDD-DQIIIYDCEQ--GT--SKNTIN-SKKYGVDLIKFTHSKTTAIHASTK-V--------DATLRYLSLHD 296 (515)
Q Consensus 232 d~~~lasgs~d-g~i~iwd~~~--~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~~-~--------d~~v~vwd~~~ 296 (515)
++++++.|+.+ ..+.++|..+ .+ .+..+. .....-.++.+ +..+++.+|. . -..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 56666666543 5688888863 22 222222 11111222222 3455555543 1 24689999988
Q ss_pred CeeeEEecCC-CC-CeEEEEEcCCCCEEEEEeCC---------------------------------------CcEEEEE
Q psy6127 297 NKYVRYFPGH-VR-KVSSLNLSPVDDSFISGSYD---------------------------------------KTVRVWD 335 (515)
Q Consensus 297 ~~~~~~~~~h-~~-~v~~l~~~~~~~~l~s~s~d---------------------------------------g~i~iwd 335 (515)
.+-...-... .. .-.++.. .+++.++.|+.+ ..+.+||
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 7643321111 11 1122222 457777888765 5789999
Q ss_pred cCCCCeEEEEecCC--Ce-eEEEECCCCCEEEEEEC------CCcEEEEEe--ecCCCCCceeeecCCCCCcCeEEEEEc
Q psy6127 336 LRQPNNVGMIQLSG--NK-PIAAYDPEGLAFAIGVN------SDSIKLYDV--RSYDKGPFASFKCPGERGCEWTGLKFS 404 (515)
Q Consensus 336 ~~~~~~~~~~~~~~--~~-~~~~~s~~~~~l~~g~~------dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~i~~l~~s 404 (515)
..+.+....-.... .. .+++. .+++.++.|+. ...+..||+ .+.... ...............+..
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~---~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN---KLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE---ECCCSSTTTCCBSCEEEE
T ss_pred CCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE---ecCCCCCCcccccceEEE
Confidence 98876655433221 11 22222 25666666653 345677776 332211 111111111111111122
Q ss_pred CCCCEEEEEECC----------------------CcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCC
Q psy6127 405 PDGKLILVSTNG----------------------SIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDG 462 (515)
Q Consensus 405 p~~~~l~~~s~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg 462 (515)
.+++.++.|+.+ ..+.+||+.+.+....-. ....... ..+...++++++.|+.++
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~--~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE-LSQGRAY--GVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE-CSSCCBS--SEEEEETTEEEEEEEECG
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC-CCCCccc--ceeEEeCCEEEEEeeeCC
Confidence 256666666532 257889988765433211 1111111 222334678888888543
Q ss_pred ------cEEEEECCCCeEEEEEc
Q psy6127 463 ------QVHIWNAERGYKVCVLD 479 (515)
Q Consensus 463 ------~I~iwd~~~~~~~~~~~ 479 (515)
.|.++++++++.+...+
T Consensus 328 ~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 328 GGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp GGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CCCEeeeEEEEEEcCcEeEeeec
Confidence 36666888877665443
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.045 Score=51.85 Aligned_cols=195 Identities=10% Similarity=0.020 Sum_probs=107.0
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeEecCCC-CceeEEEE--ecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecC----C
Q psy6127 234 SLLISCSDDDQIIIYDCEQGTSKNTINSKK-YGVDLIKF--THSKTTAIHASTKVDATLRYLSLHDNKYVRYFPG----H 306 (515)
Q Consensus 234 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~----h 306 (515)
..++.++.||.|.-.|.++|+...+++... .++....- .+.+..++++....||.+..++..+|.....+.- .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 478889999999999999999999887641 12221110 0112244444223699999999988865443321 1
Q ss_pred CCCeEE---EEE-----cCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCee--------EEEEC-----CCCCEEEE
Q psy6127 307 VRKVSS---LNL-----SPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKP--------IAAYD-----PEGLAFAI 365 (515)
Q Consensus 307 ~~~v~~---l~~-----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~s-----~~~~~l~~ 365 (515)
..++.. ... ...+..+++|+.+|.+...|+++|+.+..+....... |.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 222221 000 0135678999999999999999999999986553211 11111 12356666
Q ss_pred EECCCcEEEEEeecCCCCCceeeecCCC--CCcCe-EEEEEcCCCCEEEEEECCCcEEEEECCCCceeE
Q psy6127 366 GVNSDSIKLYDVRSYDKGPFASFKCPGE--RGCEW-TGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQ 431 (515)
Q Consensus 366 g~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~i-~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~ 431 (515)
+..+..+.+.+ ++++ .-...+..... ....+ ..-..+.|+.+ +.++.||.|.-+|..+|+.+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 66665555554 2221 00000000000 00000 00001124555 457888999999888887654
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.88 E-value=0.091 Score=49.40 Aligned_cols=222 Identities=10% Similarity=0.108 Sum_probs=109.9
Q ss_pred eEEEEECCCCeeee-EecCCCCceeEEEEecCCCeEEEEEee---CCC-------eEEEEECCCCeeeEE--ecCCCCCe
Q psy6127 244 QIIIYDCEQGTSKN-TINSKKYGVDLIKFTHSKTTAIHASTK---VDA-------TLRYLSLHDNKYVRY--FPGHVRKV 310 (515)
Q Consensus 244 ~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~~---~d~-------~v~vwd~~~~~~~~~--~~~h~~~v 310 (515)
.+..||..+++-.. .+............. .+..+++.+|. .++ .+.+||..+++-... +.......
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVT-QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEEC-SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEE-ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 47888988776443 112111111222223 34455555541 111 277889887764332 11111112
Q ss_pred EEEEEcCCCCEEEEEeCC-------CcEEEEEcCCCCeEEEEecCCCe--eEEEECCCCCEEEEEEC------CCcEEEE
Q psy6127 311 SSLNLSPVDDSFISGSYD-------KTVRVWDLRQPNNVGMIQLSGNK--PIAAYDPEGLAFAIGVN------SDSIKLY 375 (515)
Q Consensus 311 ~~l~~~~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~--~~~~~s~~~~~l~~g~~------dg~i~i~ 375 (515)
..+.+ ++..++.|+.+ ..+.+||..+.+....-....+. .+++. .+++.++.|+. ...+.+|
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence 22222 46777777754 34788898887655443222211 12222 46677777753 2358888
Q ss_pred EeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCceeEEeeccccCCCCCEEEEEec
Q psy6127 376 DVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG-----SIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTP 450 (515)
Q Consensus 376 d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp 450 (515)
|..+......... .........+.+ +++.++.|+.+ ..+.+||+.+.+.... ........ -.+++ ..
T Consensus 181 d~~~~~W~~~~~~---p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~-~~~~~-~~ 252 (318)
T 2woz_A 181 NPKKGDWKDLAPM---KTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TEFPQERS-SISLV-SL 252 (318)
T ss_dssp ETTTTEEEEECCC---SSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CCCSSCCB-SCEEE-EE
T ss_pred cCCCCEEEECCCC---CCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CCCCCccc-ceEEE-EE
Confidence 8876432211111 111111222332 56666777643 3577899887754332 11111111 11222 23
Q ss_pred CCCEEEEEeCC--------------CcEEEEECCCCeEEEE
Q psy6127 451 DSQFVASGSTD--------------GQVHIWNAERGYKVCV 477 (515)
Q Consensus 451 ~g~~l~sgs~d--------------g~I~iwd~~~~~~~~~ 477 (515)
++++++.|+.+ ..+.+||+.+.+-...
T Consensus 253 ~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 253 AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 56777777653 3588899888765544
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.71 E-value=0.048 Score=51.11 Aligned_cols=213 Identities=11% Similarity=0.056 Sum_probs=105.9
Q ss_pred CeEEEEECCCCeeeEE--ecCCCCCeEEEEEcCCCCEEEEEeC----C-----CcEEEEEcCCCCeEEEEecCCC--eeE
Q psy6127 287 ATLRYLSLHDNKYVRY--FPGHVRKVSSLNLSPVDDSFISGSY----D-----KTVRVWDLRQPNNVGMIQLSGN--KPI 353 (515)
Q Consensus 287 ~~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~----d-----g~i~iwd~~~~~~~~~~~~~~~--~~~ 353 (515)
..+.+||..+++-... +......- +++. .++..++.|+. + ..+.+||..+.+....-....+ -..
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 4688888887754332 11111111 2222 24666677665 2 4688899888765443222111 112
Q ss_pred EEECCCCCEEEEEECC-----CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC-----CcEEEEE
Q psy6127 354 AAYDPEGLAFAIGVNS-----DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG-----SIIRLFD 423 (515)
Q Consensus 354 ~~~s~~~~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d-----g~i~iwd 423 (515)
++. -+++.++.|+.+ ..+.+||..+......... + .....-..+.+ +++.++.|+.+ ..+.+||
T Consensus 117 ~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 190 (308)
T 1zgk_A 117 VGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--L-TRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYY 190 (308)
T ss_dssp EEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--S-SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEE
T ss_pred EEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--C-ccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEe
Confidence 222 266777776543 3578888876432211111 1 11111222333 56666666643 4689999
Q ss_pred CCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeEEEEEcCCCC-CCeEEEEECCCCCE
Q psy6127 424 AFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD-----GQVHIWNAERGYKVCVLDGDHP-SAVQSLQFNPKYHM 497 (515)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~ 497 (515)
+.+.+.... ........ -.+++.. ++++++.|+.+ ..+.+||+.+.+-...-..... .....+.+ ++++
T Consensus 191 ~~~~~W~~~-~~~p~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 265 (308)
T 1zgk_A 191 PERNEWRMI-TAMNTIRS-GAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRI 265 (308)
T ss_dssp TTTTEEEEC-CCCSSCCB-SCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCCeEeeC-CCCCCccc-cceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEE
Confidence 887754332 11111111 1222222 67777777754 5699999988765432221111 11122222 5667
Q ss_pred EEEeeC-------CEEEEcCCC
Q psy6127 498 LASACS-------NMAFWIPTL 512 (515)
Q Consensus 498 las~~~-------dv~iW~~~~ 512 (515)
++.|+. ++.+||+..
T Consensus 266 ~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 266 YVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EEECCBCSSCBCCEEEEEETTT
T ss_pred EEEcCcCCCcccceEEEEcCCC
Confidence 776652 256666653
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.50 E-value=1.1 Score=47.57 Aligned_cols=269 Identities=11% Similarity=0.074 Sum_probs=149.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeee
Q psy6127 221 TDKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYV 300 (515)
Q Consensus 221 ~~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~ 300 (515)
...|.++.-.++| .|..|+.+| +..||..+.+...........|.++.. .+ ..+.+++ .+.+..+|..+++..
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~-g~lWigt---~~Gl~~~~~~~~~~~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QG-DTLWLGA---LNGLYTYQLQSRKLT 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ET-TEEEEEE---TTEEEEEETTTCCEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cC-CcEEEEc---CCcceeEeCCCCeEE
Confidence 4579998877776 566677665 789998876543311112234666643 33 4566665 347888998776543
Q ss_pred EEe----cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecC-------CCeeEEEECCCCCEEEEEECC
Q psy6127 301 RYF----PGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLS-------GNKPIAAYDPEGLAFAIGVNS 369 (515)
Q Consensus 301 ~~~----~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~s~~~~~l~~g~~d 369 (515)
... ......|.++....++...+ |+.+ -+..+|..+++... +... ..+.++..++++..|..|+.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 321 11235688888887777554 4444 57788877665332 2111 12667777777776656664
Q ss_pred CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeecc----ccCCCCCEE
Q psy6127 370 DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGV----LNNNASPLE 445 (515)
Q Consensus 370 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~~i~~ 445 (515)
+-+..+|..+... ..... .....|.++...++|.+.+ |+.+ -+.+++..+++........ .-....|.+
T Consensus 211 ~Gl~~~~~~~~~~---~~~~~--l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 283 (758)
T 3ott_A 211 GYLFQYFPSTGQI---KQTEA--FHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWN 283 (758)
T ss_dssp EEEEEEETTTTEE---EEEEE--EEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEE
T ss_pred CCCeEEcCCCCeE---EeccC--CCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEE
Confidence 4577777654321 11111 1123577888888876554 5544 5888887665432211110 011234778
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEc----CCCCCCeEEEEECCCCCEEEEeeCCEEEEc
Q psy6127 446 ATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLD----GDHPSAVQSLQFNPKYHMLASACSNMAFWI 509 (515)
Q Consensus 446 ~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~las~~~dv~iW~ 509 (515)
+....+|.+- .|+..| +.++............ ......|.++.-.++|.+-+...+-+..++
T Consensus 284 i~~D~~g~lW-iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~Gl~~~~ 349 (758)
T 3ott_A 284 IFADQEHNIW-LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANGLIRFT 349 (758)
T ss_dssp EEECTTCCEE-EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTEEEEES
T ss_pred EEEcCCCCEE-EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCcceeec
Confidence 8877777644 455566 5555432211111110 112346888888888776554433244443
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.48 E-value=0.076 Score=56.08 Aligned_cols=226 Identities=13% Similarity=0.070 Sum_probs=115.7
Q ss_pred CCeEEEEEee---CCCeEEEEECCCCeeeEEe-c------CCCCCeEEEEEcC-CCCEEEEEeCCC------cEEEEEcC
Q psy6127 275 KTTAIHASTK---VDATLRYLSLHDNKYVRYF-P------GHVRKVSSLNLSP-VDDSFISGSYDK------TVRVWDLR 337 (515)
Q Consensus 275 ~~~l~~~s~~---~d~~v~vwd~~~~~~~~~~-~------~h~~~v~~l~~~~-~~~~l~s~s~dg------~i~iwd~~ 337 (515)
++.+++.+|. .-..+.+||..+++-...- . .....-.+++..+ +++.++.|+.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 3445555442 2356888998877543322 1 1111122333333 677788887543 57889998
Q ss_pred CCCeEEEEecC--CCeeEEEECCCCCEEEEEECCC--cEEEEEeecCCCCCceeee-cCCCCCcCeEEEEEcCC-CCEEE
Q psy6127 338 QPNNVGMIQLS--GNKPIAAYDPEGLAFAIGVNSD--SIKLYDVRSYDKGPFASFK-CPGERGCEWTGLKFSPD-GKLIL 411 (515)
Q Consensus 338 ~~~~~~~~~~~--~~~~~~~~s~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~-~~~~~~~~i~~l~~sp~-~~~l~ 411 (515)
+.+....-... ..-.+.+.-.++..++.|+.++ .+.+||..+.......... .+.. .....++.+..+ ++.++
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN-SLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS-CCBSCEEEEETTTTEEEE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc-ccceeEEEEeCCCCEEEE
Confidence 87554432221 1123344434888888887654 6888988764422111100 1111 111224556655 66666
Q ss_pred EEEC--C-----CcEEEEECCCCce-----eEEeecc-ccCCCCCEEEEEecCCCEEEEEeC--------CCcEEEEECC
Q psy6127 412 VSTN--G-----SIIRLFDAFNGNC-----VQSLSGV-LNNNASPLEATFTPDSQFVASGST--------DGQVHIWNAE 470 (515)
Q Consensus 412 ~~s~--d-----g~i~iwd~~~~~~-----~~~~~~~-~~~~~~i~~~~~sp~g~~l~sgs~--------dg~I~iwd~~ 470 (515)
.|+. + +.+..||+.+.+. -..+... ..... -.+++...++++++.|+. ...+.+||+.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY-GSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB-SCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc-cceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 6664 2 4588999988762 1222211 11111 123344444777777774 3469999999
Q ss_pred CCeEEEEEcCCC-------CCCe-EEEEECCCCCEEEEeeC
Q psy6127 471 RGYKVCVLDGDH-------PSAV-QSLQFNPKYHMLASACS 503 (515)
Q Consensus 471 ~~~~~~~~~~~h-------~~~V-~~l~~sp~~~~las~~~ 503 (515)
+.+-.. ..... ...+ .+.+..+++++++.|++
T Consensus 635 t~~W~~-~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 635 SETLTS-IPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TTEEEE-CCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CCeEEE-eeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 886652 22100 0000 23444566677777764
No 339
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.46 E-value=0.41 Score=45.45 Aligned_cols=150 Identities=16% Similarity=0.103 Sum_probs=81.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEe-------cCCCeeEEEECCC---CCEEEEE-E--CC
Q psy6127 303 FPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQ-------LSGNKPIAAYDPE---GLAFAIG-V--NS 369 (515)
Q Consensus 303 ~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~~s~~---~~~l~~g-~--~d 369 (515)
+...-...+.++|.|+|..+++--..|.|++++...++...... .......++++|+ +..|.+. + .+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 33344567899999999977766558999999876665432211 1234678999995 3444433 2 34
Q ss_pred CcEEEEEeecCC-----C-CCceeee-cCCCCCcCeEEEEEcCCCCEEEEEEC-------------CCcEEEEECCCCce
Q psy6127 370 DSIKLYDVRSYD-----K-GPFASFK-CPGERGCEWTGLKFSPDGKLILVSTN-------------GSIIRLFDAFNGNC 429 (515)
Q Consensus 370 g~i~i~d~~~~~-----~-~~~~~~~-~~~~~~~~i~~l~~sp~~~~l~~~s~-------------dg~i~iwd~~~~~~ 429 (515)
+.|.-|...... . .....+. ...........+.|.|||.+.++.+. .|.|.-.+.. ++.
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~i 185 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEP 185 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCc
Confidence 455555554321 0 1111111 11111223347999999976665432 2444444443 220
Q ss_pred --------eEEe-eccccCCCCCEEEEEecCCCEEEE
Q psy6127 430 --------VQSL-SGVLNNNASPLEATFTPDSQFVAS 457 (515)
Q Consensus 430 --------~~~~-~~~~~~~~~i~~~~~sp~g~~l~s 457 (515)
...+ .++.+ ...++|+|+|.+.++
T Consensus 186 p~~nPf~~~~i~a~G~RN----p~Gla~dp~G~L~~~ 218 (347)
T 3das_A 186 APGNPFPGSPVYSYGHRN----VQGLAWDDKQRLFAS 218 (347)
T ss_dssp CTTCSSTTCCEEEBCCSB----CCEEEECTTCCEEEE
T ss_pred cCCCCCCCCeEEeeCCCC----cceEEECCCCCEEEE
Confidence 0111 12222 578999998876554
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.45 E-value=0.11 Score=45.48 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=84.9
Q ss_pred CeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceee-ecC-CCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy6127 350 NKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASF-KCP-GERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNG 427 (515)
Q Consensus 350 ~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~-~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~ 427 (515)
....++|+|+|.+.++ .+|.+.-.+..+......... ... ...-.....+.|.|+|.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 5779999999997777 677766555433221111000 000 001111358999999987777 5588887775332
Q ss_pred ceeE-----EeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCe------EEEEEcCCCCCCeEEEEECCCCC
Q psy6127 428 NCVQ-----SLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGY------KVCVLDGDHPSAVQSLQFNPKYH 496 (515)
Q Consensus 428 ~~~~-----~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~sp~~~ 496 (515)
..-. +..+... -..+..+.|.|+|.+.++. |+.++-+...++. ....+-...-..-+-+.|.|++.
T Consensus 118 ~~~~Wl~~a~~vg~~g-w~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 118 DTDNWIARATEVGSGG-WSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp TTCCHHHHSEEEECSS-GGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCceeccccEeccCC-CCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 1110 1100000 0126899999999877766 7775544333221 01111101223445677999998
Q ss_pred EEEEeeCCEEEEcCC
Q psy6127 497 MLASACSNMAFWIPT 511 (515)
Q Consensus 497 ~las~~~dv~iW~~~ 511 (515)
+.+.. +.++|...
T Consensus 195 l~~v~--~g~~Y~~~ 207 (236)
T 1tl2_A 195 LFGVQ--GGKFYEDY 207 (236)
T ss_dssp EEEEE--TTEEEEES
T ss_pred EEEEe--CCeEEecC
Confidence 88877 55666554
No 341
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.37 E-value=0.22 Score=46.57 Aligned_cols=220 Identities=10% Similarity=0.066 Sum_probs=107.7
Q ss_pred EEEccceeeeeEeeeeccccCCcEEEEEEcCCCCEEEEEeC-----C------CeEEEEECCCCeeeeE--ecCCCCcee
Q psy6127 201 TKCSENLVRSYRVAKVFRENTDKINSLDYSSDGSLLISCSD-----D------DQIIIYDCEQGTSKNT--INSKKYGVD 267 (515)
Q Consensus 201 i~~wd~~~~~~~~~~~~~~h~~~I~~l~~spd~~~lasgs~-----d------g~i~iwd~~~~~~~~~--~~~~~~~v~ 267 (515)
+..+|.....|.. ..+..........+...+++.++.|+. . ..+..||..+++-... +........
T Consensus 15 ~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 93 (315)
T 4asc_A 15 AVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFG 93 (315)
T ss_dssp EEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCE
T ss_pred eEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhcee
Confidence 4444433444543 333322222233333457788888873 1 1377889887654221 111111111
Q ss_pred EEEEecCCCeEEEEEeeC-------CCeEEEEECCCCeeeEE--ecCCCCCeEEEEEcCCCCEEEEEeC-C-----CcEE
Q psy6127 268 LIKFTHSKTTAIHASTKV-------DATLRYLSLHDNKYVRY--FPGHVRKVSSLNLSPVDDSFISGSY-D-----KTVR 332 (515)
Q Consensus 268 ~~~~~~~~~~l~~~s~~~-------d~~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~-d-----g~i~ 332 (515)
.+.+ +..+++.+|.. ...+.+||..+++-... +......-..+. .+++.++.|+. + ..+.
T Consensus 94 ~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~ 168 (315)
T 4asc_A 94 LGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMC 168 (315)
T ss_dssp EEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEE
T ss_pred EEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEE
Confidence 1222 44565555421 25689999988754322 211111112222 34667777776 2 4689
Q ss_pred EEEcCCCCeEEEEecCCC--eeEEEECCCCCEEEEEECCC-----cEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcC
Q psy6127 333 VWDLRQPNNVGMIQLSGN--KPIAAYDPEGLAFAIGVNSD-----SIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSP 405 (515)
Q Consensus 333 iwd~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 405 (515)
+||..+.+....-....+ ...++ .-+++.++.|+.++ .+.+||..+..... .............+.+
T Consensus 169 ~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~~~~~~~~-- 242 (315)
T 4asc_A 169 VYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP---FEAFPQERSSLSLVSL-- 242 (315)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEE---ECCCSSCCBSCEEEEE--
T ss_pred EEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEE---CCCCCCcccceeEEEE--
Confidence 999988765443222211 11222 22667778877654 47788877643221 1111111111222333
Q ss_pred CCCEEEEEECC--------------CcEEEEECCCCceeEE
Q psy6127 406 DGKLILVSTNG--------------SIIRLFDAFNGNCVQS 432 (515)
Q Consensus 406 ~~~~l~~~s~d--------------g~i~iwd~~~~~~~~~ 432 (515)
+++.++.|+.+ ..+.+||+.+.+-...
T Consensus 243 ~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 243 VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 55666677653 2367888877654433
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.23 E-value=0.28 Score=48.74 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=61.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEec---------CCCeeEEEECCC---CCEEEEEEC------
Q psy6127 307 VRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQL---------SGNKPIAAYDPE---GLAFAIGVN------ 368 (515)
Q Consensus 307 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~s~~---~~~l~~g~~------ 368 (515)
-...+.++|.|+|+++++-...+.|++++..+++....... ......++|+|+ +..|.+...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34578999999999777654445788888765654332222 233458999995 555554432
Q ss_pred -------CCcEEEEEeecCCCCC---ceeee-cCCCCCcCeEEEEEcCCCCEEEEEE
Q psy6127 369 -------SDSIKLYDVRSYDKGP---FASFK-CPGERGCEWTGLKFSPDGKLILVST 414 (515)
Q Consensus 369 -------dg~i~i~d~~~~~~~~---~~~~~-~~~~~~~~i~~l~~sp~~~~l~~~s 414 (515)
...|.-|+........ ...+. ...........++|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 1345555554321100 01111 1222223467999999998666544
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.14 E-value=0.12 Score=49.44 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=49.0
Q ss_pred CCeEEEEEeeCCCeEEEEECCC--Cee--eEEec-CCCCCeEEEEEcCCCCEEEEEeC-C---------CcEEEEEcCCC
Q psy6127 275 KTTAIHASTKVDATLRYLSLHD--NKY--VRYFP-GHVRKVSSLNLSPVDDSFISGSY-D---------KTVRVWDLRQP 339 (515)
Q Consensus 275 ~~~l~~~s~~~d~~v~vwd~~~--~~~--~~~~~-~h~~~v~~l~~~~~~~~l~s~s~-d---------g~i~iwd~~~~ 339 (515)
+..+++.+|.....+.++|..+ .+- +..+. .....-..+.+ +++.++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 4556666655566889999864 222 12222 11111222222 4666777765 2 46889999887
Q ss_pred CeEEEEecC-CC-eeEEEECCCCCEEEEEECC
Q psy6127 340 NNVGMIQLS-GN-KPIAAYDPEGLAFAIGVNS 369 (515)
Q Consensus 340 ~~~~~~~~~-~~-~~~~~~s~~~~~l~~g~~d 369 (515)
+....-... .. ....+...+++.++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 654433222 11 1122222577788888754
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.62 E-value=1.4 Score=40.94 Aligned_cols=193 Identities=10% Similarity=0.085 Sum_probs=96.2
Q ss_pred EcCCCCEEEEEeC----CC-------eEEEEECCCCeeeeE--ecCCCCceeEEEEecCCCeEEEEEeeCC------CeE
Q psy6127 229 YSSDGSLLISCSD----DD-------QIIIYDCEQGTSKNT--INSKKYGVDLIKFTHSKTTAIHASTKVD------ATL 289 (515)
Q Consensus 229 ~spd~~~lasgs~----dg-------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~~~d------~~v 289 (515)
...++..++.|+. ++ .+..||..+++-... +.........+.+ +..+++.+|... ..+
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccceE
Confidence 3457778888873 12 277888877654322 2211111222222 345666554321 358
Q ss_pred EEEECCCCeeeEE--ecCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCCeEEEEecCCC--eeEEEECCC
Q psy6127 290 RYLSLHDNKYVRY--FPGHVRKVSSLNLSPVDDSFISGSY------DKTVRVWDLRQPNNVGMIQLSGN--KPIAAYDPE 359 (515)
Q Consensus 290 ~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~s~~ 359 (515)
.+||..+.+-... +......-..+. .+++.++.|+. -..+.+||+.+.+....-....+ ...++. -+
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~ 206 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HK 206 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET
T ss_pred EEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-EC
Confidence 8899887764432 111111111222 35666677664 23589999988765544322211 112222 26
Q ss_pred CCEEEEEECC-----CcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECC--------------CcEE
Q psy6127 360 GLAFAIGVNS-----DSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNG--------------SIIR 420 (515)
Q Consensus 360 ~~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~d--------------g~i~ 420 (515)
++.++.|+.+ ..+.+||..+......... + ........+.+ +++.++.|+.+ ..+.
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~ 281 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF--P-QERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIW 281 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCC--S-SCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEE
T ss_pred CEEEEEcCcCCCCccceEEEEECCCCeEEECCCC--C-CcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEE
Confidence 6777777643 3467788776442211111 1 11111122222 55666666543 3577
Q ss_pred EEECCCCceeEE
Q psy6127 421 LFDAFNGNCVQS 432 (515)
Q Consensus 421 iwd~~~~~~~~~ 432 (515)
+||+.+.+-...
T Consensus 282 ~yd~~~~~W~~~ 293 (318)
T 2woz_A 282 KYEDDKKEWAGM 293 (318)
T ss_dssp EEETTTTEEEEE
T ss_pred EEeCCCCEehhh
Confidence 888877665443
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.25 E-value=0.94 Score=47.69 Aligned_cols=199 Identities=9% Similarity=0.067 Sum_probs=104.5
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCeeeeEe-c-----CCCC-ceeEEEEecCCCeEEEEEeeCC-----CeEEEEEC
Q psy6127 231 SDGSLLISCSDD----DQIIIYDCEQGTSKNTI-N-----SKKY-GVDLIKFTHSKTTAIHASTKVD-----ATLRYLSL 294 (515)
Q Consensus 231 pd~~~lasgs~d----g~i~iwd~~~~~~~~~~-~-----~~~~-~v~~~~~~~~~~~l~~~s~~~d-----~~v~vwd~ 294 (515)
.++..++.|+.+ ..+.+||..+++-...- . .... .-.+++..+.+..+++.+|... ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777753 46888998876543322 1 1111 1122333321344555554222 46889999
Q ss_pred CCCeeeEEecCCC-CCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCeEEEEe---c--C-CCeeEEEECCC-CCEEE
Q psy6127 295 HDNKYVRYFPGHV-RKVSSLNLSPVDDSFISGSYDK--TVRVWDLRQPNNVGMIQ---L--S-GNKPIAAYDPE-GLAFA 364 (515)
Q Consensus 295 ~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~---~--~-~~~~~~~~s~~-~~~l~ 364 (515)
.+.+-...-.... ..-.+++...+++.++.|+.++ .+.+||..+.+....-. . . .....+.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8865433211111 1112233324688888888655 68999998876544322 1 1 11223555555 66777
Q ss_pred EEEC--C-----CcEEEEEeecCCCCC---ceeeec-CCCCCcCeEEEEEcCCCCEEEEEEC--------CCcEEEEECC
Q psy6127 365 IGVN--S-----DSIKLYDVRSYDKGP---FASFKC-PGERGCEWTGLKFSPDGKLILVSTN--------GSIIRLFDAF 425 (515)
Q Consensus 365 ~g~~--d-----g~i~i~d~~~~~~~~---~~~~~~-~~~~~~~i~~l~~sp~~~~l~~~s~--------dg~i~iwd~~ 425 (515)
.|+. + ..+.+||+.+..... ...... +....... +++...+++.++.|+. ...+.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 458899988765200 111111 10111111 2333333667777763 3469999998
Q ss_pred CCcee
Q psy6127 426 NGNCV 430 (515)
Q Consensus 426 ~~~~~ 430 (515)
+.+..
T Consensus 635 t~~W~ 639 (695)
T 2zwa_A 635 SETLT 639 (695)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 87654
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.08 E-value=0.22 Score=43.56 Aligned_cols=103 Identities=18% Similarity=0.063 Sum_probs=63.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcee-----EEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy6127 397 EWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCV-----QSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAER 471 (515)
Q Consensus 397 ~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~ 471 (515)
.+..++|+|+|...++ .+|.++-.+..+.... .+..+...... ...+.|.|+|.+.++ .||.|+-++..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999999986666 6676666665442211 11111111111 468999999988877 569998887644
Q ss_pred CeE-------EEEEcCCCCCCeEEEEECCCCCEEEEeeCCE
Q psy6127 472 GYK-------VCVLDGDHPSAVQSLQFNPKYHMLASACSNM 505 (515)
Q Consensus 472 ~~~-------~~~~~~~h~~~V~~l~~sp~~~~las~~~dv 505 (515)
... ...-.. --..+..|.|.|+|.+-+..++.+
T Consensus 117 ~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~dg~l 156 (236)
T 1tl2_A 117 SDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVHGQQF 156 (236)
T ss_dssp STTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEETTEE
T ss_pred CCCCceeccccEeccC-CCCceEEEEECCCceEEEEeCCcE
Confidence 211 011111 124689999999999888884443
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.038 Score=52.36 Aligned_cols=186 Identities=8% Similarity=-0.012 Sum_probs=97.3
Q ss_pred eCCCeEEEEECCCCeeeEEecCC-CCCeEEEEE--cCCCCEEEEE--eCCCcEEEEEcCCCCeEEEEecCCCeeE--EEE
Q psy6127 284 KVDATLRYLSLHDNKYVRYFPGH-VRKVSSLNL--SPVDDSFISG--SYDKTVRVWDLRQPNNVGMIQLSGNKPI--AAY 356 (515)
Q Consensus 284 ~~d~~v~vwd~~~~~~~~~~~~h-~~~v~~l~~--~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~ 356 (515)
+.||.|.-+|.++|+...+++.. ..++....- .+.+..++.+ +.||.+..+|..+|.....+....-+.. +..
T Consensus 17 t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~ 96 (339)
T 2be1_A 17 DVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL 96 (339)
T ss_dssp ETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE
T ss_pred eCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecccccc
Confidence 37999999999999999888653 122222110 0112234433 5899999999988865544432211100 111
Q ss_pred -------CC----CCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCC-CcC-----eEEEE---Ec--CCCCEEEEEE
Q psy6127 357 -------DP----EGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGER-GCE-----WTGLK---FS--PDGKLILVST 414 (515)
Q Consensus 357 -------s~----~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~-----i~~l~---~s--p~~~~l~~~s 414 (515)
.+ .+..+++|+.+|.+...|+++++.. ....... ... ..+.. +. ..+..++.+.
T Consensus 97 ~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~----W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~ 172 (339)
T 2be1_A 97 KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII----SAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGK 172 (339)
T ss_dssp ECC----------CCEEEEECEEEEEEEEEETTTCCEE----EEESTTCBCC--------------------CCEEEEEE
T ss_pred CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE----EEEecCCCcccccccccccccccccccccCCCeEEEec
Confidence 11 4567889999999999999987621 1111111 000 00111 10 1235677777
Q ss_pred CCCcEEEEECCCCceeEEee--ccccCCCC--C-EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy6127 415 NGSIIRLFDAFNGNCVQSLS--GVLNNNAS--P-LEATFTPDSQFVASGSTDGQVHIWNAERGYKVC 476 (515)
Q Consensus 415 ~dg~i~iwd~~~~~~~~~~~--~~~~~~~~--i-~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~ 476 (515)
.+..+.+.+ ++|+ ...+. ........ + ..-..+.|+.+ +.++.||.|.-+|..+|+.+.
T Consensus 173 ~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 173 TIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 666666666 4443 21111 00000000 0 00001224555 446788888888888888765
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.87 E-value=3.4 Score=40.93 Aligned_cols=107 Identities=13% Similarity=0.039 Sum_probs=62.2
Q ss_pred CcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe---eeeEec---------CCCCceeEEEEecC---CCeEEEEEee-
Q psy6127 222 DKINSLDYSSDGS-LLISCSDDDQIIIYDCEQGT---SKNTIN---------SKKYGVDLIKFTHS---KTTAIHASTK- 284 (515)
Q Consensus 222 ~~I~~l~~spd~~-~lasgs~dg~i~iwd~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~l~~~s~~- 284 (515)
..-+.|+|.|||+ .|+.+...|.|++++..... .+..+. ........++|+|+ ...++++...
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568999999996 45556788999999754221 222221 11456788999996 3344444321
Q ss_pred CC----------CeEEEEECCC----------CeeeEEec--CCCCCeEEEEEcCCCCEEEEEeCC
Q psy6127 285 VD----------ATLRYLSLHD----------NKYVRYFP--GHVRKVSSLNLSPVDDSFISGSYD 328 (515)
Q Consensus 285 ~d----------~~v~vwd~~~----------~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~d 328 (515)
.+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 11 1444455532 12222221 222346889999999877766543
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.61 E-value=0.44 Score=47.67 Aligned_cols=126 Identities=14% Similarity=0.070 Sum_probs=80.3
Q ss_pred cEEEEEcCC----C-CeEEEEecCCCeeEEEECCCCCEEEEEE-CCCcEEEEEeecCCC-------CCceeeecCCCCCc
Q psy6127 330 TVRVWDLRQ----P-NNVGMIQLSGNKPIAAYDPEGLAFAIGV-NSDSIKLYDVRSYDK-------GPFASFKCPGERGC 396 (515)
Q Consensus 330 ~i~iwd~~~----~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~ 396 (515)
.|.+.|.+. + .....++.......+.++|||+++++++ .+.++.++|++.... .+.........-..
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 477888776 3 3445556667788899999999988876 578999999985210 11111111122334
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCC----------ceeEEeeccccCCCCCEEEEE------ecCCCEEEEEe
Q psy6127 397 EWTGLKFSPDGKLILVSTNGSIIRLFDAFNG----------NCVQSLSGVLNNNASPLEATF------TPDSQFVASGS 459 (515)
Q Consensus 397 ~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~i~~~~~------sp~g~~l~sgs 459 (515)
.....+|.++|.-..+-.-|..|.-|++... ..+..+..|.. +-.+.- .|||++|++..
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq----pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ----PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC----EEEEEETTTTSTTCCSCEEEEEE
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC----CcccccCCCccCCCCccEEEEec
Confidence 4568999999954445558999999998643 23444443332 222322 47899999875
No 350
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=92.60 E-value=7.4 Score=37.19 Aligned_cols=190 Identities=7% Similarity=-0.028 Sum_probs=107.8
Q ss_pred eEEEEECCCC--eeeeEecCC------CCceeEEEEe---cC---CCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCC
Q psy6127 244 QIIIYDCEQG--TSKNTINSK------KYGVDLIKFT---HS---KTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRK 309 (515)
Q Consensus 244 ~i~iwd~~~~--~~~~~~~~~------~~~v~~~~~~---~~---~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~ 309 (515)
.|.+||+.++ +.++++.-. ......+++. |. +...+..+-...+.+.|+|+.+++..+.+. ..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~--~~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH--PT- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC--GG-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc--CC-
Confidence 6888999998 888776543 3457778877 22 245555554567899999999999887663 21
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEEEecCCCeeEEEECCC----CCEEEEEECCCcEEEEEeec--CCCC
Q psy6127 310 VSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGMIQLSGNKPIAAYDPE----GLAFAIGVNSDSIKLYDVRS--YDKG 383 (515)
Q Consensus 310 v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~~g~~dg~i~i~d~~~--~~~~ 383 (515)
|.|+.....+ -+|.-. .....+..++++|+ ++.|....-.+. ++|.+.+ .+..
T Consensus 201 -----~~pd~~~~~~--i~G~~~-------------~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~ 259 (381)
T 3q6k_A 201 -----FKAERPTKFD--YGGKEY-------------EFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQK 259 (381)
T ss_dssp -----GSCCSCEEEE--ETTEEE-------------EECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSST
T ss_pred -----CccccCcceE--ECCEEe-------------EeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCc
Confidence 3444111111 122211 12344888999998 788887765542 4444432 1110
Q ss_pred -CceeeecC--CCCCcCeEEEEEc-CCCCEEEEEECCCcEEEEECCC-C---ceeEEeeccccCCCCCEEEEEecCCCEE
Q psy6127 384 -PFASFKCP--GERGCEWTGLKFS-PDGKLILVSTNGSIIRLFDAFN-G---NCVQSLSGVLNNNASPLEATFTPDSQFV 455 (515)
Q Consensus 384 -~~~~~~~~--~~~~~~i~~l~~s-p~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~~i~~~~~sp~g~~l 455 (515)
....++.. .+....-..++++ .+|..+++--..+.|..|+..+ . .....+.... .-..+..+.+.++|.+.
T Consensus 260 ~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lw 338 (381)
T 3q6k_A 260 GGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLW 338 (381)
T ss_dssp TCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEE
T ss_pred chhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEE
Confidence 01111111 1112333456776 5776666666788999999875 1 1223332222 33345667776666655
Q ss_pred EEE
Q psy6127 456 ASG 458 (515)
Q Consensus 456 ~sg 458 (515)
+..
T Consensus 339 v~s 341 (381)
T 3q6k_A 339 FMS 341 (381)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.75 E-value=9.6 Score=34.74 Aligned_cols=247 Identities=9% Similarity=0.017 Sum_probs=121.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEE
Q psy6127 223 KINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRY 302 (515)
Q Consensus 223 ~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~ 302 (515)
.|..++....- .++. . ||.|..|-......+..-......|..++.... +.++. . ||.|+.|-......+..
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~--hs~~l--~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY--HSLAL--K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS--EEEEE--E-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC--EEEEE--E-CCEEEEeeCCCCCCCCC
Confidence 56666655432 3333 4 899999976542221111111235666665433 23333 3 89999997654322111
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEE-EEecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCC
Q psy6127 303 FPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVG-MIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYD 381 (515)
Q Consensus 303 ~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~ 381 (515)
-..-...|..++...+ ..+.-. ||.|..|-......+. .......+..++.- ....+.-. +|.+..|-.....
T Consensus 97 P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G--~~~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 97 PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTS
T ss_pred CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc--cCEEEEEE-CCEEEEecCCCCC
Confidence 1111246777777643 333344 8999999765422111 11112224334332 22333333 7888888765532
Q ss_pred CCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCC
Q psy6127 382 KGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTD 461 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~d 461 (515)
... .+......|..++...+. .++. .||.++.|-......+-... .....|..++..... .++. . |
T Consensus 171 qlg-----~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~---~~~~~v~~i~~G~~h-~~al-~-~ 236 (282)
T 3qhy_B 171 QTT-----VPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPT---EALSGVSAIASGEWY-SLAL-K-N 236 (282)
T ss_dssp TTS-----CCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCG---GGGSSCCEEEECSSC-EEEE-E-T
T ss_pred CCC-----CceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCc---ccCCCceEEEcCCCE-EEEE-E-C
Confidence 211 111112456677665443 2333 58999999754322111100 111236666654332 3333 3 8
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee
Q psy6127 462 GQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC 502 (515)
Q Consensus 462 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~ 502 (515)
|.|+.|=.....++. -...|.+++-.+...+.++.+
T Consensus 237 g~v~~wG~n~~gq~~-----v~~~v~~iaaG~~h~~al~~~ 272 (282)
T 3qhy_B 237 GKVIAWGSSRTAPSS-----VQSGVSSIEAGPNAAYALKGG 272 (282)
T ss_dssp TEEEEESTTCCCCGG-----GSSCEEEEEECSSCEEEEEC-
T ss_pred CEEEEecCCCCcccc-----CCCCcEEEEECcCeEEEEecC
Confidence 999999655432221 223577777666555444443
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.16 E-value=21 Score=35.13 Aligned_cols=242 Identities=10% Similarity=0.039 Sum_probs=121.0
Q ss_pred CceeEEEEecCCC-eEEEEEeeCCCeEEEEECCCCe---eeEEec---------CCCCCeEEEEEcCC----CCEEEEEe
Q psy6127 264 YGVDLIKFTHSKT-TAIHASTKVDATLRYLSLHDNK---YVRYFP---------GHVRKVSSLNLSPV----DDSFISGS 326 (515)
Q Consensus 264 ~~v~~~~~~~~~~-~l~~~s~~~d~~v~vwd~~~~~---~~~~~~---------~h~~~v~~l~~~~~----~~~l~s~s 326 (515)
...+.|+|.|++. .++++. ..|.|++++..... .+..+. ........|+|+|+ +.+.++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~e--r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILE--KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEE--TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEe--CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 4567899999996 565554 68999999754321 222221 11456889999996 33333322
Q ss_pred C--C----------CcEEEEEcCCC----------CeEEEEe---cCCCeeEEEECCCCCEEEEEECCCc----------
Q psy6127 327 Y--D----------KTVRVWDLRQP----------NNVGMIQ---LSGNKPIAAYDPEGLAFAIGVNSDS---------- 371 (515)
Q Consensus 327 ~--d----------g~i~iwd~~~~----------~~~~~~~---~~~~~~~~~~s~~~~~l~~g~~dg~---------- 371 (515)
. + ..|.-|.+..+ +.+..+. ..+....+.|.|||.+.++.+..+.
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~ 171 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDG 171 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccC
Confidence 2 1 13444655421 2222222 1234677999999988777654331
Q ss_pred -----EEEEEeecCCCC-----------Cce------eeecCCCCCcCeEEEEEcCC-----CC-EEEEEECCC----cE
Q psy6127 372 -----IKLYDVRSYDKG-----------PFA------SFKCPGERGCEWTGLKFSPD-----GK-LILVSTNGS----II 419 (515)
Q Consensus 372 -----i~i~d~~~~~~~-----------~~~------~~~~~~~~~~~i~~l~~sp~-----~~-~l~~~s~dg----~i 419 (515)
=+|+.+...... +.. ......++..+ ..++|+|. |+ +++.+...| .-
T Consensus 172 ~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp-~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ 250 (463)
T 2wg3_C 172 LSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDP-GRCAVDRHPTDININLTILCSDSNGKNRSSA 250 (463)
T ss_dssp CCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSC-CBEEEESSCSSTTCSEEEEEECC------CE
T ss_pred cCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCc-ceEEECCCCCCcccceEEEecccCCCCCCCC
Confidence 134433322110 000 00001122222 37999996 34 444433212 12
Q ss_pred EEEECCCCc------eeEEeeccccCCCCCEEEEEecC-------CCEEEEEeCCCcEEEEECCCCe---EEEEEc----
Q psy6127 420 RLFDAFNGN------CVQSLSGVLNNNASPLEATFTPD-------SQFVASGSTDGQVHIWNAERGY---KVCVLD---- 479 (515)
Q Consensus 420 ~iwd~~~~~------~~~~~~~~~~~~~~i~~~~~sp~-------g~~l~sgs~dg~I~iwd~~~~~---~~~~~~---- 479 (515)
.|..+..+. ++..+..+ ....+..+.|-.. |.+++ +...+.|....++.+. ....+.
T Consensus 251 ei~~i~~G~~yG~~~P~~~~~~~--~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~ 327 (463)
T 2wg3_C 251 RILQIIKGKDYESEPSLLEFKPF--SNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTS 327 (463)
T ss_dssp EEEEEC----CCSCCCCEECCC------CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEET
T ss_pred eEeeeccCCCCCCCCCeEEeeCC--CCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCc
Confidence 333333222 22222211 0123667777432 33444 4445766666554331 111221
Q ss_pred ----CCCCCCeEEEEECCCCCEEEEee-------CCEEEEcCC
Q psy6127 480 ----GDHPSAVQSLQFNPKYHMLASAC-------SNMAFWIPT 511 (515)
Q Consensus 480 ----~~h~~~V~~l~~sp~~~~las~~-------~dv~iW~~~ 511 (515)
......+.++...|||.+.++.+ .+.+||.+.
T Consensus 328 ~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 328 GSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp TSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred ccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 11235789999999999888876 468999875
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=86.43 E-value=14 Score=33.52 Aligned_cols=219 Identities=13% Similarity=0.051 Sum_probs=105.5
Q ss_pred ceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCeEEE
Q psy6127 265 GVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQPNNVGM 344 (515)
Q Consensus 265 ~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 344 (515)
.|..++.... +.++. . ||.|+.|-......+..-......|..++..... .++. . ||.|..|-......+..
T Consensus 25 ~i~~ia~G~~--h~~~l--~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL--K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSS--EEEEE--E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeCCC--eEEEE--E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC
Confidence 4666655432 33333 3 8999999765432221111123356677765432 2333 4 89999997553211110
Q ss_pred -EecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEE
Q psy6127 345 -IQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFD 423 (515)
Q Consensus 345 -~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd 423 (515)
......+..++.. ....+.-. +|.+..|-........ .+......|..++...+. .+.-. ||.++.|-
T Consensus 97 P~~~~~~v~~ia~G--~~hs~al~-~G~v~~wG~n~~gqlg-----~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG 165 (282)
T 3qhy_B 97 PAEARSGVDAIAAG--AWASYALK-DGKVIAWGDDSDGQTT-----VPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWG 165 (282)
T ss_dssp CGGGSSSEEEEEEE--TTEEEEEE-TTEEEEEECCTTSTTS-----CCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEE
T ss_pred CcccCCCeEEEECc--CCEEEEEe-CCeEEEecCCCCCcCC-----CCccCCCCeEEEEcccCE--EEEEE-CCEEEEec
Confidence 0112234434333 33444445 8899888766533211 111122356666664432 23334 78999997
Q ss_pred CCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeC
Q psy6127 424 AFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACS 503 (515)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~ 503 (515)
......+.. +.. ....|..++... .+.+.- .||.|+.|=....-.+. ++......|..++-.....+.++ ++
T Consensus 166 ~n~~gqlg~-p~~--~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h~~al~-~g 237 (282)
T 3qhy_B 166 DNYFGQTTV-PAE--AQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWYSLALK-NG 237 (282)
T ss_dssp CCTTSTTSC-CGG--GGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSCEEEEE-TT
T ss_pred CCCCCCCCC-cee--cCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCCCEEEEEE-CC
Confidence 654221111 100 112255555443 233333 58999999654321111 01012235667776666555555 55
Q ss_pred CEEEEcC
Q psy6127 504 NMAFWIP 510 (515)
Q Consensus 504 dv~iW~~ 510 (515)
.+..|-.
T Consensus 238 ~v~~wG~ 244 (282)
T 3qhy_B 238 KVIAWGS 244 (282)
T ss_dssp EEEEEST
T ss_pred EEEEecC
Confidence 5666643
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.03 E-value=24 Score=33.60 Aligned_cols=260 Identities=13% Similarity=0.063 Sum_probs=119.4
Q ss_pred CCcEEEEEEcC--CCCEEEEEeCCC----eEEEEECCCCeeeeEecC--------------CCCceeEEEEecC--CCeE
Q psy6127 221 TDKINSLDYSS--DGSLLISCSDDD----QIIIYDCEQGTSKNTINS--------------KKYGVDLIKFTHS--KTTA 278 (515)
Q Consensus 221 ~~~I~~l~~sp--d~~~lasgs~dg----~i~iwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~--~~~l 278 (515)
...|.+|++.| ++.+.+ +...| .|...+ ..++.-..+.. ....|.++++.|. ...+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 35799999998 454444 44444 333322 22322222211 1124777888873 4555
Q ss_pred EEEEeeCCCeEEEEECCCCeeeEEec-------------------CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q psy6127 279 IHASTKVDATLRYLSLHDNKYVRYFP-------------------GHVRKVSSLNLSPV-DDSFISGSYDKTVRVWDLRQ 338 (515)
Q Consensus 279 ~~~s~~~d~~v~vwd~~~~~~~~~~~-------------------~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~ 338 (515)
++++ ..+.|...+- .++.-..+. .....+.+|.+.|. ...++.+..++.|...+ ..
T Consensus 132 ~~g~--~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-Dg 207 (394)
T 3b7f_A 132 YAGT--SPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DA 207 (394)
T ss_dssp EEEE--ETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-ST
T ss_pred EEEe--cCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CC
Confidence 5544 3555555432 222211111 01235789999884 34455555445444332 22
Q ss_pred CCeEEEEec--------------CCCeeEEEECCC-CCEEEEEECCCcEEEEEeecCCCCCceeeec--CCCCCcCeEEE
Q psy6127 339 PNNVGMIQL--------------SGNKPIAAYDPE-GLAFAIGVNSDSIKLYDVRSYDKGPFASFKC--PGERGCEWTGL 401 (515)
Q Consensus 339 ~~~~~~~~~--------------~~~~~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~i~~l 401 (515)
++....+.. ...+..+.++|. ...+.++...+ |...+ ... .....+.. .......+..+
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~--D~G-~tW~~~~~~l~~~~~~~~~~i 283 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD--RRE-GVWKRIGDAMPREVGDIGFPI 283 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE--TTT-TEEECGGGGSCTTTCSCEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC--CCC-CcceECCCCCCCCCccceEEE
Confidence 333322211 113677888885 45666666544 33322 211 11111111 11111235678
Q ss_pred EEcC-CCCEEEEEEC-----------CCcEEEEECCC-CceeEEeec-cccCCC----CCEEEEEecC-CCEEEEEeCCC
Q psy6127 402 KFSP-DGKLILVSTN-----------GSIIRLFDAFN-GNCVQSLSG-VLNNNA----SPLEATFTPD-SQFVASGSTDG 462 (515)
Q Consensus 402 ~~sp-~~~~l~~~s~-----------dg~i~iwd~~~-~~~~~~~~~-~~~~~~----~i~~~~~sp~-g~~l~sgs~dg 462 (515)
.++| +...+.++.. ++...+|...+ |+.-..+.. ...... ....++++|. ...|+.++.++
T Consensus 284 ~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g 363 (394)
T 3b7f_A 284 VVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGG 363 (394)
T ss_dssp EECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTS
T ss_pred EECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCC
Confidence 8887 3344555432 23345555444 333333321 111100 1235788874 34566676666
Q ss_pred cEEEEECCCCeEEEEEcCCCCCCeEEEEEC
Q psy6127 463 QVHIWNAERGYKVCVLDGDHPSAVQSLQFN 492 (515)
Q Consensus 463 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 492 (515)
.|..-+ +.|+.-..+.. +-..+.+++|.
T Consensus 364 ~l~~S~-D~G~tW~~~~~-~lp~~~~v~~~ 391 (394)
T 3b7f_A 364 EIWASA-DEGEHWQCIAS-HLPHIYAVQSA 391 (394)
T ss_dssp CEEEES-STTSBCEEEEC-SCSCEEEEEEE
T ss_pred eEEEEC-CCCCCceEccc-CCCCeeEEEEe
Confidence 655432 33433333333 33457777764
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=84.43 E-value=29 Score=33.09 Aligned_cols=186 Identities=8% Similarity=0.095 Sum_probs=104.1
Q ss_pred CeEEEEECCCC--eeeEEecC------CCCCeEEEEEc---CC----CCEEEEEe-CCCcEEEEEcCCCCeEEEEecCCC
Q psy6127 287 ATLRYLSLHDN--KYVRYFPG------HVRKVSSLNLS---PV----DDSFISGS-YDKTVRVWDLRQPNNVGMIQLSGN 350 (515)
Q Consensus 287 ~~v~vwd~~~~--~~~~~~~~------h~~~v~~l~~~---~~----~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~ 350 (515)
-.+.+||+.++ +.++++.- ..+.+..+.+. |+ +.+.+.+. ..+.|.++|+.+++..+..+..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 35667788777 77766532 23567888887 22 23444443 4678999999999888766321
Q ss_pred eeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCceeeecCCCCCcCeEEEEEcCC----CCEEEEEECCCcEEEEECC-
Q psy6127 351 KPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPFASFKCPGERGCEWTGLKFSPD----GKLILVSTNGSIIRLFDAF- 425 (515)
Q Consensus 351 ~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~----~~~l~~~s~dg~i~iwd~~- 425 (515)
+.|+.....+ -+|.-.-| ...+..++++|+ +++|+.....+. ++|.+.
T Consensus 201 -----~~pd~~~~~~--i~G~~~~~-------------------~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T 253 (381)
T 3q6k_A 201 -----FKAERPTKFD--YGGKEYEF-------------------KAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNT 253 (381)
T ss_dssp -----GSCCSCEEEE--ETTEEEEE-------------------CCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEH
T ss_pred -----CccccCcceE--ECCEEeEe-------------------ccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEH
Confidence 3444111111 12221111 124678999998 788887765542 334332
Q ss_pred ----CCc---eeEEeeccccCCCCCEEEEEe-cCCCEEEEEeCCCcEEEEECCC-C----eEEEEEcCCCCCCeEEEEEC
Q psy6127 426 ----NGN---CVQSLSGVLNNNASPLEATFT-PDSQFVASGSTDGQVHIWNAER-G----YKVCVLDGDHPSAVQSLQFN 492 (515)
Q Consensus 426 ----~~~---~~~~~~~~~~~~~~i~~~~~s-p~g~~l~sgs~dg~I~iwd~~~-~----~~~~~~~~~h~~~V~~l~~s 492 (515)
+.. .++.+ +..+....-..+++. .+|.++++--..+.|..|+..+ . ..........-..+.++.+.
T Consensus 254 ~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~ 332 (381)
T 3q6k_A 254 KELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVD 332 (381)
T ss_dssp HHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEEC
T ss_pred HHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEEC
Confidence 221 12222 222211223456675 5676677667788999999875 1 11222222133467888888
Q ss_pred CCCCEEEEee
Q psy6127 493 PKYHMLASAC 502 (515)
Q Consensus 493 p~~~~las~~ 502 (515)
++|.+-+.++
T Consensus 333 ~~g~Lwv~sn 342 (381)
T 3q6k_A 333 SKGGLWFMSN 342 (381)
T ss_dssp TTSCEEEEEC
T ss_pred CCCeEEEEEC
Confidence 8887666554
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=81.55 E-value=55 Score=34.22 Aligned_cols=223 Identities=11% Similarity=0.027 Sum_probs=111.6
Q ss_pred EecCCCeEEEEE---eeCCCeEEEEECCCCeeeEE-ecCCCC--------CeEEEEEcCCCCEEEEEe----------CC
Q psy6127 271 FTHSKTTAIHAS---TKVDATLRYLSLHDNKYVRY-FPGHVR--------KVSSLNLSPVDDSFISGS----------YD 328 (515)
Q Consensus 271 ~~~~~~~l~~~s---~~~d~~v~vwd~~~~~~~~~-~~~h~~--------~v~~l~~~~~~~~l~s~s----------~d 328 (515)
++|+++++++.- |+.-..++++|+.+++.+.. +. ... ....++|..++..+++.. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 677777766553 22334799999999987631 22 111 113457774444444321 12
Q ss_pred CcEEEEEcCCCC--eEEEEecCC-C-eeEEEECCCCC-----EEEEEECC---CcEEEEEeecCCCCCceeeecCCCCCc
Q psy6127 329 KTVRVWDLRQPN--NVGMIQLSG-N-KPIAAYDPEGL-----AFAIGVNS---DSIKLYDVRSYDKGPFASFKCPGERGC 396 (515)
Q Consensus 329 g~i~iwd~~~~~--~~~~~~~~~-~-~~~~~~s~~~~-----~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~ 396 (515)
..|+.|.+-+.. -...+.... . ......+++++ .+++.+.+ ..+.+.+...... ....+ ......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~ 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL-KLQKI--NMPSDA 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC-EEEEC--CSCTTC
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC-cceEe--ecCCcc
Confidence 468888877653 223332222 1 22345566665 24443322 3445555432111 11122 112221
Q ss_pred CeEEEEEcCCCCEEEEE----------ECCCcEEEEECCCCc-------eeEEeeccccCCCCCEEEEEecCCCEEEEEe
Q psy6127 397 EWTGLKFSPDGKLILVS----------TNGSIIRLFDAFNGN-------CVQSLSGVLNNNASPLEATFTPDSQFVASGS 459 (515)
Q Consensus 397 ~i~~l~~sp~~~~l~~~----------s~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs 459 (515)
.+..++++.+++.. ...+.|...|+.++. ....+..+. ....+..+.+..+ .++++..
T Consensus 293 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 293 ---TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT-ANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp ---EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC-TTEEEEEEEECSS-CEEEEEE
T ss_pred ---eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC-CCCeEEEEEEECC-EEEEEEE
Confidence 22334455544422 246778888887642 122222222 2223667788765 5677777
Q ss_pred CCCc--EEEEECCCCe-EEEE-EcCCCCCCeEEEEECCCCC-EEEEee
Q psy6127 460 TDGQ--VHIWNAERGY-KVCV-LDGDHPSAVQSLQFNPKYH-MLASAC 502 (515)
Q Consensus 460 ~dg~--I~iwd~~~~~-~~~~-~~~~h~~~V~~l~~sp~~~-~las~~ 502 (515)
.++. +.++++.+++ .... +.-...+.+.....++++. ++++.+
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 7764 6777776665 2233 3221235677777777665 444443
No 357
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=81.14 E-value=35 Score=31.69 Aligned_cols=236 Identities=8% Similarity=0.003 Sum_probs=125.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC----eeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC---------CC
Q psy6127 231 SDGSLLISCSDDDQIIIYDCEQG----TSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH---------DN 297 (515)
Q Consensus 231 pd~~~lasgs~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~---------~~ 297 (515)
|+..++++.+.+|.|+--....- .....++. .+.+..+......+.+++.+ ..|.++-+... .|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT--~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFT--NKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEE--TTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEE--CCCEEEEEEHHHCcCCCCCCCC
Confidence 56778899999999987754311 11112222 24455555555666777776 58887666542 23
Q ss_pred eeeEE---ecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCC------CeEEEE--ecCCCeeEEEECCCCCEE
Q psy6127 298 KYVRY---FPGHVRKVSSLNLSPV---DDSFISGSYDKTVRVWDLRQP------NNVGMI--QLSGNKPIAAYDPEGLAF 363 (515)
Q Consensus 298 ~~~~~---~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~------~~~~~~--~~~~~~~~~~~s~~~~~l 363 (515)
.++.. +. ....|.++...++ +.+++.++.+|.++...+... .-+..+ ...+.+..+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 32222 22 2344655443332 568899999999999877421 222222 222334444444455678
Q ss_pred EEEECCCcEEEEEeecCCCCC--ceeeec-CCCCCcCeEEEEEcCCCC-EEEEEECCCcEEEEECCC-------CceeEE
Q psy6127 364 AIGVNSDSIKLYDVRSYDKGP--FASFKC-PGERGCEWTGLKFSPDGK-LILVSTNGSIIRLFDAFN-------GNCVQS 432 (515)
Q Consensus 364 ~~g~~dg~i~i~d~~~~~~~~--~~~~~~-~~~~~~~i~~l~~sp~~~-~l~~~s~dg~i~iwd~~~-------~~~~~~ 432 (515)
+..+.+|.+..++...-...- ..-... .-.....|.++..-+++. .+++.+..|..+..++.. ++-+..
T Consensus 159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~ 238 (323)
T 1wp5_A 159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI 238 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred EEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEEC
Confidence 888899999888876422100 001111 112234455554444444 788888888888777643 111222
Q ss_pred eeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 433 LSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 433 ~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
+.........+..+....++..++..+.+|.+.-.++.
T Consensus 239 ~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred eeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 22111111124433333334455566677776655554
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=81.01 E-value=57 Score=34.08 Aligned_cols=242 Identities=10% Similarity=0.052 Sum_probs=126.1
Q ss_pred EEEEE-EcCCCCEEEEEeC-----CCeEEEEECCCCeeee-EecCCCC--------ceeEEEEecCCCeEEEEEe-----
Q psy6127 224 INSLD-YSSDGSLLISCSD-----DDQIIIYDCEQGTSKN-TINSKKY--------GVDLIKFTHSKTTAIHAST----- 283 (515)
Q Consensus 224 I~~l~-~spd~~~lasgs~-----dg~i~iwd~~~~~~~~-~~~~~~~--------~v~~~~~~~~~~~l~~~s~----- 283 (515)
...+. ++||+++++.+-. -..++++|+.+++.+. .+. ... ....++|. +++.+++.+.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEE-CCCEEEEEeCCCCCC
Confidence 34455 8899988765422 2479999999988763 122 111 11345787 4445554321
Q ss_pred ----eCCCeEEEEECCCCe--eeEEecCCCCC-eEEEEEcCCCC-----EEEEEeCC---CcEEEEEcCCCC-eEEEEec
Q psy6127 284 ----KVDATLRYLSLHDNK--YVRYFPGHVRK-VSSLNLSPVDD-----SFISGSYD---KTVRVWDLRQPN-NVGMIQL 347 (515)
Q Consensus 284 ----~~d~~v~vwd~~~~~--~~~~~~~h~~~-v~~l~~~~~~~-----~l~s~s~d---g~i~iwd~~~~~-~~~~~~~ 347 (515)
.....|+.|.+-+.. -...+.+.... -.....+++++ .+++.+.+ ..+.+.|..... ....+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 123568888876542 22334433333 33455666766 24544422 345666655321 2233333
Q ss_pred CCCeeEEEECCCCCEEEEE----------ECCCcEEEEEeecCCC-----CCceeeecCCCCCcCeEEEEEcCCCCEEEE
Q psy6127 348 SGNKPIAAYDPEGLAFAIG----------VNSDSIKLYDVRSYDK-----GPFASFKCPGERGCEWTGLKFSPDGKLILV 412 (515)
Q Consensus 348 ~~~~~~~~~s~~~~~l~~g----------~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~i~~l~~sp~~~~l~~ 412 (515)
+... .+..++++.+++.. ...+.|...|+..... .....+. .......+..+.+.++ ..+++
T Consensus 289 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEECC-EEEEE
Confidence 3222 22334455554422 2467788899876421 1112212 2334556778888876 46666
Q ss_pred EECCCc--EEEEECCCCc-eeEE-eeccccCCCCCEEEEEecCCC-EEEEEeC---CCcEEEEECCCCe
Q psy6127 413 STNGSI--IRLFDAFNGN-CVQS-LSGVLNNNASPLEATFTPDSQ-FVASGST---DGQVHIWNAERGY 473 (515)
Q Consensus 413 ~s~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~~i~~~~~sp~g~-~l~sgs~---dg~I~iwd~~~~~ 473 (515)
...++. +.++++.+++ .... +... ....+.....++++. ++++.+. -+.+..+|+. ++
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp--~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLP--YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCC--STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCC--CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 666664 6677766664 2233 2211 112355556667665 4444432 3678888876 44
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=79.97 E-value=34 Score=30.89 Aligned_cols=198 Identities=10% Similarity=0.058 Sum_probs=111.1
Q ss_pred CceeEEEEecCCCeEEEEEeeCCCeEEEEE---CCCCeeeEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q psy6127 264 YGVDLIKFTHSKTTAIHASTKVDATLRYLS---LHDNKYVRYFPGHVRKVSSLNLSP-VDDSFISGSYDKTVRVWDLRQP 339 (515)
Q Consensus 264 ~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd---~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~ 339 (515)
+.+..+......+.+++.+ .+|.++--. +..+.....+. ....|..+.... +...++..+.+|.++-..+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT--~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVS--NRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEETTSCEEEEE--TTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECCCCEEEEEc--CCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 4455555555556666665 577766543 32221111133 345566664421 4678999999999999987543
Q ss_pred C----eEEE--EecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCC-----ceeeecCCCCCcCeEEEEEcCCCC
Q psy6127 340 N----NVGM--IQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGP-----FASFKCPGERGCEWTGLKFSPDGK 408 (515)
Q Consensus 340 ~----~~~~--~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~i~~l~~sp~~~ 408 (515)
. -... +...+.+..+........++..+..|.+..++...-.... ...+.. .....|.++...+++.
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L--~~~d~vv~~~~~~~~~ 178 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL--EKNDETSGLRIWNGEP 178 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEEEESSCS
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc--CCCCEEEEEEEeCCCC
Confidence 2 1111 2223445555555566688888999999888765422110 011111 2234555655555667
Q ss_pred EEEEEECCCcEEEEECCCC-------ceeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEE--EECC
Q psy6127 409 LILVSTNGSIIRLFDAFNG-------NCVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHI--WNAE 470 (515)
Q Consensus 409 ~l~~~s~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~i--wd~~ 470 (515)
+++..+..|.++...+..- +-+..+ .....+..+....+...++..+.+|.+.. ++..
T Consensus 179 ~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i----~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 179 YLLVITAKGRVKKISHEEIPKTNRGVKGTEVS----GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEETTSCEEEEEGGGSCCCCTTCCCEECC----CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEeCCCcEEEeEHHHcccCCCCCcceEEE----cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 8889999999988876432 222222 11222444433333445666677777766 6654
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=75.00 E-value=58 Score=30.87 Aligned_cols=215 Identities=8% Similarity=0.009 Sum_probs=98.8
Q ss_pred CEEEEEeCCCeEEEEECCC-CeeeeEe--cCCCCceeEEEEec-CCCeEEEEEeeCCC----eEEEEECCCCeeeEEec-
Q psy6127 234 SLLISCSDDDQIIIYDCEQ-GTSKNTI--NSKKYGVDLIKFTH-SKTTAIHASTKVDA----TLRYLSLHDNKYVRYFP- 304 (515)
Q Consensus 234 ~~lasgs~dg~i~iwd~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~s~~~d~----~v~vwd~~~~~~~~~~~- 304 (515)
..|..|...| +.+++... ++.-..+ ......|.++++.| +...+++++ ..+ .|...+ +.++.-..+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~--~~g~~g~gl~~s~-D~G~tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAA--RTGHLGPTVFRSD-DGGGNWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEE--EC--CCEEEEEES-STTSCCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEe--cCCCCCccEEEeC-CCCCCceECCc
Confidence 3566777766 44444332 2221111 12345799999998 334455554 233 344332 2232212111
Q ss_pred -----C--------CCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCeEEEEec--------------------CC
Q psy6127 305 -----G--------HVRKVSSLNLSPV--DDSFISGSYDKTVRVWDLRQPNNVGMIQL--------------------SG 349 (515)
Q Consensus 305 -----~--------h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------------~~ 349 (515)
. +...|.++++.|. ...+..+...+.|...+ ..++.-..+.. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCC
Confidence 1 1125788999873 45566666666554443 22333222211 12
Q ss_pred CeeEEEECCC-CCEEEEEECCCcEEEEEeecCCCCCceeeec-CCC---------CCcCeEEEEEcCC-CCEEEEEECCC
Q psy6127 350 NKPIAAYDPE-GLAFAIGVNSDSIKLYDVRSYDKGPFASFKC-PGE---------RGCEWTGLKFSPD-GKLILVSTNGS 417 (515)
Q Consensus 350 ~~~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-~~~---------~~~~i~~l~~sp~-~~~l~~~s~dg 417 (515)
.+..+.++|. ...+.++..++.+ |-...... ....... ... ....+..+.++|+ ...++++...+
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl--~~s~DgG~-tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGV--FESTDAGT-DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEE--EEESSTTS-SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ceeEEEECCCCCCEEEEEECCCCE--EEECCCCC-CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 3567888883 4445555444433 32222111 1111110 000 0134789999986 45677776554
Q ss_pred cEEEEECCCCceeEEeeccccC--CCCCEEEEEecC-CCEEEEE
Q psy6127 418 IIRLFDAFNGNCVQSLSGVLNN--NASPLEATFTPD-SQFVASG 458 (515)
Q Consensus 418 ~i~iwd~~~~~~~~~~~~~~~~--~~~i~~~~~sp~-g~~l~sg 458 (515)
|...+ ..++.-..+...... ...+..++++|. ...++++
T Consensus 255 -l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 255 -IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp -EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred -EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 44443 233333333211111 022467788763 3444444
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.13 E-value=10 Score=41.37 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=33.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEe
Q psy6127 222 DKINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTI 259 (515)
Q Consensus 222 ~~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~ 259 (515)
..|.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 36778888889999999999999999999999988765
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=70.95 E-value=65 Score=29.64 Aligned_cols=192 Identities=6% Similarity=0.002 Sum_probs=108.8
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCee-------ee--EecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECCC---C
Q psy6127 230 SSDGSLLISCSDDDQIIIYDCEQGTS-------KN--TINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLHD---N 297 (515)
Q Consensus 230 spd~~~lasgs~dg~i~iwd~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~---~ 297 (515)
-|+..++++.+.+|.|+--....-+. .. .++. .+.+..+......+.+++.+ ..|.++-+.... .
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T--~~G~~~~~~~~~ip~~ 81 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMIS--NEGKLYLINAYEIKDS 81 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEE--TTSEEEEEEGGGSCC-
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEE--CCCeEEEEEHHHCCCC
Confidence 35667889999999999876543211 11 1222 24455555555566777776 688877766532 1
Q ss_pred ------eee---EEecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCCe-----EEE--EecCCCeeEEEECC
Q psy6127 298 ------KYV---RYFPGHVRKVSSLNLSP---VDDSFISGSYDKTVRVWDLRQPNN-----VGM--IQLSGNKPIAAYDP 358 (515)
Q Consensus 298 ------~~~---~~~~~h~~~v~~l~~~~---~~~~l~s~s~dg~i~iwd~~~~~~-----~~~--~~~~~~~~~~~~s~ 358 (515)
.++ -.+. ....|.++...+ ++..++..+..|.++...+..... +.. +...+.+..+....
T Consensus 82 ~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~ 160 (312)
T 1suu_A 82 SRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF 160 (312)
T ss_dssp ------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEEC
T ss_pred CccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeC
Confidence 110 1122 223455554333 466788899999999888743221 111 22233344444444
Q ss_pred CCCEEEEEECCCcEEEEEeecCCCCC--ceeeec-CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy6127 359 EGLAFAIGVNSDSIKLYDVRSYDKGP--FASFKC-PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAF 425 (515)
Q Consensus 359 ~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~~-~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~ 425 (515)
++..++..+.+|....+....-.... ..-... .-.....+.++..-+++..+++.+..|..+..++.
T Consensus 161 ~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 161 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 55678888899999999886521110 011111 11123455566555566678888999998888864
No 363
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=70.85 E-value=64 Score=29.57 Aligned_cols=236 Identities=9% Similarity=0.005 Sum_probs=123.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeee---------EecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC------
Q psy6127 231 SDGSLLISCSDDDQIIIYDCEQGTSKN---------TINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH------ 295 (515)
Q Consensus 231 pd~~~lasgs~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~------ 295 (515)
|+..++++.+.+|.|+--.+.+-+... .++. .+.+..+......+.+++.+ ..|.++-+...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT--~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFS--SRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEE--TTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEE--CCCEEEEEEhhHCcCCC
Confidence 456678899999999877665422111 1222 23444555555566677776 57876666542
Q ss_pred ---CCeeeE---EecCCCCCeEEEEEc---CCCCEEEEEeCCCcEEEEEcCCCC-----eEEEE--ecCCCeeEEEECCC
Q psy6127 296 ---DNKYVR---YFPGHVRKVSSLNLS---PVDDSFISGSYDKTVRVWDLRQPN-----NVGMI--QLSGNKPIAAYDPE 359 (515)
Q Consensus 296 ---~~~~~~---~~~~h~~~v~~l~~~---~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~--~~~~~~~~~~~s~~ 359 (515)
.|.++. .+. ....|.++... +++.+++..+.+|.++--.+.... -+..+ ...+.+..+....+
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~ 156 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 156 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECT
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCC
Confidence 222222 122 33456655442 346688999999999998764211 11212 22233444444445
Q ss_pred CCEEEEEECCCcEEEEEeecCCCCC--ceeee-cCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-------e
Q psy6127 360 GLAFAIGVNSDSIKLYDVRSYDKGP--FASFK-CPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGN-------C 429 (515)
Q Consensus 360 ~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~-~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~-------~ 429 (515)
...++..+.+|.+..++...-.... ..-.. ..-.....|.++...+++..+++.+..|..+-.++.... -
T Consensus 157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 5677788899998888775422110 00111 111233456566555556678888999998888763211 1
Q ss_pred eEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCC
Q psy6127 430 VQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAER 471 (515)
Q Consensus 430 ~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~ 471 (515)
...+. .......+..+....+..-++..+.+|.+.-+++..
T Consensus 237 ~~~~~-~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 237 VISIK-VTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EESSC-CCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEeeE-ecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11111 111122344444433444455566677666565543
No 364
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=69.59 E-value=16 Score=37.21 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=44.6
Q ss_pred CEEEEEecCCCEEEEEeCC------------CcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEe
Q psy6127 443 PLEATFTPDSQFVASGSTD------------GQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASA 501 (515)
Q Consensus 443 i~~~~~sp~g~~l~sgs~d------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~ 501 (515)
+-.++|+|.|.+++.-..+ +.+.+.+..+++....+.+.....++.++|+||++.|...
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999999966654321 2466777788888777777566789999999999988765
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.19 E-value=65 Score=29.00 Aligned_cols=197 Identities=9% Similarity=-0.010 Sum_probs=105.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEE---ECCCCeeeeEecCCCCceeEEEEec--CCCeEEEEEeeCCCeEEEEECCC
Q psy6127 222 DKINSLDYSSDGSLLISCSDDDQIIIY---DCEQGTSKNTINSKKYGVDLIKFTH--SKTTAIHASTKVDATLRYLSLHD 296 (515)
Q Consensus 222 ~~I~~l~~spd~~~lasgs~dg~i~iw---d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~~~d~~v~vwd~~~ 296 (515)
+.+..+.-.....+|+.-+.+|.++-- ++..+.....+. ....|..+.. + +...+++++ .+|.++...+..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T--~~G~iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLAT--KKGYVKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEE--TTSEEEEEEGGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEe--CCCEEEEEEHHH
Confidence 455555444444556666677876643 332222111132 2345555543 4 456677776 799999988654
Q ss_pred C------eeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------CCeEEEE--ecCCCeeEEEECCCCC
Q psy6127 297 N------KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQ-------PNNVGMI--QLSGNKPIAAYDPEGL 361 (515)
Q Consensus 297 ~------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~--~~~~~~~~~~~s~~~~ 361 (515)
- .....++. .+.+..+........++..+..|.+..++... ..-+..+ .....+..+...+++.
T Consensus 100 ~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~ 178 (276)
T 3no0_A 100 FEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEP 178 (276)
T ss_dssp TTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCS
T ss_pred hhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCC
Confidence 2 22222332 34566665555566888889999988887532 1112222 2233444444445567
Q ss_pred EEEEEECCCcEEEEEeecCCCCCce--eeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEE--EEC
Q psy6127 362 AFAIGVNSDSIKLYDVRSYDKGPFA--SFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRL--FDA 424 (515)
Q Consensus 362 ~l~~g~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~i--wd~ 424 (515)
.++..+..|.++...+......... -.... .....+..+....+...++..+.+|.+.. ++.
T Consensus 179 ~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 179 YLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp EEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred EEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 8888899999999988664321110 11111 12233434333333345566666676666 654
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=66.99 E-value=23 Score=35.73 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=44.8
Q ss_pred CCEEEEEecCCCEEEEEeC------------CCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEee
Q psy6127 442 SPLEATFTPDSQFVASGST------------DGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASAC 502 (515)
Q Consensus 442 ~i~~~~~sp~g~~l~sgs~------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~ 502 (515)
....++|+++|.+.+.... .+.+..++..+++....+.......++.++|+||++.|..+-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3678999999987773321 125777788888877766543446799999999999887653
No 367
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=65.52 E-value=94 Score=29.45 Aligned_cols=229 Identities=10% Similarity=0.093 Sum_probs=113.6
Q ss_pred CeEEEEEeeCCCeEEEEECCCC-----------eeeEEecC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----
Q psy6127 276 TTAIHASTKVDATLRYLSLHDN-----------KYVRYFPG-HVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQP---- 339 (515)
Q Consensus 276 ~~l~~~s~~~d~~v~vwd~~~~-----------~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~---- 339 (515)
...++.+ .||.|+.|-.... .....+.. ....+..++++......+.-..||.|..|-....
T Consensus 63 ~~~~~l~--~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG 140 (389)
T 3kci_A 63 QTLFAVT--ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140 (389)
T ss_dssp TEEEEEE--TTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTC
T ss_pred CeEEEEc--CCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCC
Confidence 3344443 6999999964321 11111211 2234555677666667777788999999964321
Q ss_pred ----C-e--EEEEecCCCeeEEEECCCCCEEEEEECCCcEEEEEeecCCC------C-CceeeecCCCCCcCeEEEEEcC
Q psy6127 340 ----N-N--VGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDK------G-PFASFKCPGERGCEWTGLKFSP 405 (515)
Q Consensus 340 ----~-~--~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~------~-~~~~~~~~~~~~~~i~~l~~sp 405 (515)
. . ...+..-.....+.++......++-..+|.|..|-...... . ..............+..++...
T Consensus 141 ~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~ 220 (389)
T 3kci_A 141 HGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS 220 (389)
T ss_dssp SSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC
T ss_pred CCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC
Confidence 0 1 11111111123334444455566667889999997543110 0 0111111122233566676654
Q ss_pred CCCEEEEEECCCcEEEEECCCC-c----------eeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECCC---
Q psy6127 406 DGKLILVSTNGSIIRLFDAFNG-N----------CVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAER--- 471 (515)
Q Consensus 406 ~~~~l~~~s~dg~i~iwd~~~~-~----------~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~~--- 471 (515)
...+.++-..||.|+.|-.... + ....+... ....+..++.. ..+.++-..||.|+.|=...
T Consensus 221 g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~Gq 296 (389)
T 3kci_A 221 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL--TGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHR 296 (389)
T ss_dssp SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG--TTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGT
T ss_pred CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc--CCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCC
Confidence 3456666778999999964321 1 11111111 11124444443 34455556889999996432
Q ss_pred -------C-eEEEEEcCCCCCCeEEEEECCCCCEEEEeeCCEEEEcC
Q psy6127 472 -------G-YKVCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFWIP 510 (515)
Q Consensus 472 -------~-~~~~~~~~~h~~~V~~l~~sp~~~~las~~~dv~iW~~ 510 (515)
. .....+.......|..++......++++.++.+..|=.
T Consensus 297 LG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~ 343 (389)
T 3kci_A 297 LGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGD 343 (389)
T ss_dssp TCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeC
Confidence 0 11122222122456677665554444444555666644
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=64.09 E-value=23 Score=36.84 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=30.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeEecC
Q psy6127 223 KINSLDYSSDGSLLISCSDDDQIIIYDCEQGTSKNTINS 261 (515)
Q Consensus 223 ~I~~l~~spd~~~lasgs~dg~i~iwd~~~~~~~~~~~~ 261 (515)
.|.++.+ +..++++-+.|+++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665554 467999999999999999999998876644
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.80 E-value=1.1e+02 Score=33.93 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=32.1
Q ss_pred CEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEc
Q psy6127 443 PLEATFTPDSQFVASGSTDGQVHIWNAERGYKVCVLD 479 (515)
Q Consensus 443 i~~~~~sp~g~~l~sgs~dg~I~iwd~~~~~~~~~~~ 479 (515)
+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4566777888999999999999999999999988754
No 370
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.27 E-value=1.9e+02 Score=31.30 Aligned_cols=38 Identities=11% Similarity=0.299 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEee
Q psy6127 397 EWTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLS 434 (515)
Q Consensus 397 ~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 434 (515)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46678888888999999999999999999999988754
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=59.98 E-value=1.2e+02 Score=28.72 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=125.8
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC---------CeeeeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC----
Q psy6127 229 YSSDGSLLISCSDDDQIIIYDCEQ---------GTSKNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH---- 295 (515)
Q Consensus 229 ~spd~~~lasgs~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~---- 295 (515)
+-|+..++++.+.+|.|+--.+.+ +.....++. ...+..+......+.+++.+ ..|.++-+...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT--~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFT--SSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEE--TTSEEEEEEGGGSCB
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEe--CCCeEEEEEHHHCcC
Confidence 457788999999999999765421 112222332 34566666666667777776 57877666532
Q ss_pred -----CCeeeEE---ecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCC-----eEEEE--ecCCCeeEEEEC
Q psy6127 296 -----DNKYVRY---FPGHVRKVSSLNLSP---VDDSFISGSYDKTVRVWDLRQPN-----NVGMI--QLSGNKPIAAYD 357 (515)
Q Consensus 296 -----~~~~~~~---~~~h~~~v~~l~~~~---~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~--~~~~~~~~~~~s 357 (515)
.|.++.. +. ....|.++...+ ++.+|+.++..|.++...+.... -+..+ .....+-.+...
T Consensus 80 ~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~ 158 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT 158 (370)
T ss_dssp CCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEE
T ss_pred CCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEe
Confidence 2222221 22 234565554432 35689999999999998764322 12222 222334344444
Q ss_pred CCCCEEEEEECCCcEEEEEeecCCCCC--ceeeec-CCCCCcCeEEEEEcC-----------------------------
Q psy6127 358 PEGLAFAIGVNSDSIKLYDVRSYDKGP--FASFKC-PGERGCEWTGLKFSP----------------------------- 405 (515)
Q Consensus 358 ~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~~-~~~~~~~i~~l~~sp----------------------------- 405 (515)
.....++..+.+|.+..++...-...- ..-... .-.....|.++...+
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~ 238 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVI 238 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC---------------------------
T ss_pred CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccc
Confidence 455678888889988888765422100 000111 011223444444443
Q ss_pred ------CCCEEEEEECCCcEEEEECCCCc-------eeEEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEEC
Q psy6127 406 ------DGKLILVSTNGSIIRLFDAFNGN-------CVQSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNA 469 (515)
Q Consensus 406 ------~~~~l~~~s~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~ 469 (515)
++..+++.+..|..+...+..-. -+..+... .....+..+.+..+..-++..+..|.+.-..+
T Consensus 239 ~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~-~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 239 DVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTT-ERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp --------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCC-TTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred ccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEec-CCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 44678889999998888764321 12222111 11223444433344445555566666555543
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.47 E-value=95 Score=34.51 Aligned_cols=37 Identities=11% Similarity=0.308 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEee
Q psy6127 398 WTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCVQSLS 434 (515)
Q Consensus 398 i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 434 (515)
+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3456677788999999999999999999999988754
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=58.01 E-value=1.2e+02 Score=28.11 Aligned_cols=199 Identities=10% Similarity=0.040 Sum_probs=105.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEE---CCC------CeeeeE---ecCCCCceeEEEEec---CCCeEEEEEeeCCC
Q psy6127 223 KINSLDYSSDGSLLISCSDDDQIIIYD---CEQ------GTSKNT---INSKKYGVDLIKFTH---SKTTAIHASTKVDA 287 (515)
Q Consensus 223 ~I~~l~~spd~~~lasgs~dg~i~iwd---~~~------~~~~~~---~~~~~~~v~~~~~~~---~~~~l~~~s~~~d~ 287 (515)
.+..+........|+.-+..|.+.-.. +.. |.++.. +.. ...|..+...+ +...+++++ .+|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T--~~G 119 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLAT--RNG 119 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEE--TTS
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEc--CCC
Confidence 344333333344555555667655443 332 232211 222 33455544333 466777776 799
Q ss_pred eEEEEECCCC-------eeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CC----C---eEEE--EecCC
Q psy6127 288 TLRYLSLHDN-------KYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLR--QP----N---NVGM--IQLSG 349 (515)
Q Consensus 288 ~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~--~~----~---~~~~--~~~~~ 349 (515)
.++...+..- .....+.. .+.+..+........++..+..|.+..+... .- . -+.. +....
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d 198 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDD 198 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTC
T ss_pred EEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCC
Confidence 9998876542 22223443 3455555555556678888899998888766 21 1 1111 22334
Q ss_pred CeeEEEECCCCCEEEEEECCCcEEEEEeecCCCCCc--eeeec--CCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy6127 350 NKPIAAYDPEGLAFAIGVNSDSIKLYDVRSYDKGPF--ASFKC--PGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAF 425 (515)
Q Consensus 350 ~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~--~~~~~--~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~ 425 (515)
.+..+...+++..++..+..|.++.-.+........ .-... .......+..+....+...++..+.+|.+.-++..
T Consensus 199 ~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 199 RLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 455555556667889999999999888765432111 11111 11112234444433344456666667766666543
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=57.16 E-value=27 Score=35.52 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=41.9
Q ss_pred eEEEEEcCCCCEEEEEECC------------CcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEE
Q psy6127 398 WTGLKFSPDGKLILVSTNG------------SIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASG 458 (515)
Q Consensus 398 i~~l~~sp~~~~l~~~s~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sg 458 (515)
.-.|+|+|.|++++.-..+ ..+.+.+..+++..+.+.+.. ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 4579999999866554322 235666777787766666543 3458999999999988765
No 375
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=55.99 E-value=1.3e+02 Score=27.88 Aligned_cols=234 Identities=8% Similarity=-0.001 Sum_probs=127.3
Q ss_pred CEEEEEeCCCeEEEEECCCC-------eeeeEec-CCCCceeEEEEecCCCeEEEEEeeCCCeEEEEE---CCC------
Q psy6127 234 SLLISCSDDDQIIIYDCEQG-------TSKNTIN-SKKYGVDLIKFTHSKTTAIHASTKVDATLRYLS---LHD------ 296 (515)
Q Consensus 234 ~~lasgs~dg~i~iwd~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd---~~~------ 296 (515)
..+++.+.+|.|+--.+.+- +-...+. .....+..+......+.+++.+ ..|.++-.. +..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT--~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFT--TQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEE--TTSEEEEEEGGGSCBCCSSSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEe--CCCeEEEEEHHHCcCCCccCC
Confidence 46778888888886653221 1111111 1234455555556666677666 577766554 322
Q ss_pred CeeeEEec--CCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCCe-----EEE--EecCCCeeEEEECCCCCEEE
Q psy6127 297 NKYVRYFP--GHVRKVSSLNLSP---VDDSFISGSYDKTVRVWDLRQPNN-----VGM--IQLSGNKPIAAYDPEGLAFA 364 (515)
Q Consensus 297 ~~~~~~~~--~h~~~v~~l~~~~---~~~~l~s~s~dg~i~iwd~~~~~~-----~~~--~~~~~~~~~~~~s~~~~~l~ 364 (515)
|.++..+- .....|.++..-+ +...++..+.+|.++.-.+..... +.. +.....+..+........++
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLL 161 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEE
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEE
Confidence 23322211 1234565554433 477999999999999987654221 111 22233344444445566788
Q ss_pred EEECCCcEEEEEee--cCCCCC--ceeee-cCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-------eeEE
Q psy6127 365 IGVNSDSIKLYDVR--SYDKGP--FASFK-CPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAFNGN-------CVQS 432 (515)
Q Consensus 365 ~g~~dg~i~i~d~~--~~~~~~--~~~~~-~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~-------~~~~ 432 (515)
..+..|.+..+... .-.... ..-.. ..-.....|.++...+++.+++..+..|.++.-.+.... -+..
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 88899999888876 321100 00111 111234456676666667789999999999888754322 1222
Q ss_pred eeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEEECC
Q psy6127 433 LSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIWNAE 470 (515)
Q Consensus 433 ~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iwd~~ 470 (515)
+.... ....+..+....+...++..+.+|.+.-++..
T Consensus 242 ~~l~~-~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 242 VMYDR-RRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SCCCT-TTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEecC-CCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 22111 12224444444445566667778877777653
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=46.08 E-value=72 Score=32.20 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=41.9
Q ss_pred cCeEEEEEcCCCCEEEEEEC------------CCcEEEEECCCCceeEEeeccccCCCCCEEEEEecCCCEEEEEe
Q psy6127 396 CEWTGLKFSPDGKLILVSTN------------GSIIRLFDAFNGNCVQSLSGVLNNNASPLEATFTPDSQFVASGS 459 (515)
Q Consensus 396 ~~i~~l~~sp~~~~l~~~s~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~sgs 459 (515)
.....|.|+++|.+.++... ...+..++..+++....+.... ...++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 34568999999987664322 1256777777787655554322 23479999999999888763
No 377
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=46.03 E-value=2.9e+02 Score=29.09 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=74.2
Q ss_pred CCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeeEecCC-------CCceeEEEEecCCCe-EEEEEeeCC----C
Q psy6127 221 TDKINSLDYSSD-GSLLISCSDDDQIIIYDCEQGTSKNTINSK-------KYGVDLIKFTHSKTT-AIHASTKVD----A 287 (515)
Q Consensus 221 ~~~I~~l~~spd-~~~lasgs~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~-l~~~s~~~d----~ 287 (515)
.+.|.+|+++|. ...++.+...+.|...+ +.|+.-..+..+ ...+.++++.|.... ++++.+... +
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999995 45666677667665554 223332223221 246999999986544 444442112 2
Q ss_pred eEEEEECCCCeeeEEecC---------CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCeEEEEec-------CCC
Q psy6127 288 TLRYLSLHDNKYVRYFPG---------HVRKVSSLNLSPVD-DSFISGSYDKTVRVWDLRQPNNVGMIQL-------SGN 350 (515)
Q Consensus 288 ~v~vwd~~~~~~~~~~~~---------h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~ 350 (515)
.|. ...+.|+.-..... ....+..+++.|.. +.++.+...+.|. ...+.++.-..... ...
T Consensus 93 ~v~-~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFY-VSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEE-EESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEE-EECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCC
Confidence 222 22333332222211 01135678888754 3555555444332 22333443333321 123
Q ss_pred eeEEEECCC-CCEEEEEECC
Q psy6127 351 KPIAAYDPE-GLAFAIGVNS 369 (515)
Q Consensus 351 ~~~~~~s~~-~~~l~~g~~d 369 (515)
+..+.++|. +..++++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 667888884 4456666554
No 378
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=40.59 E-value=1.9e+02 Score=25.49 Aligned_cols=141 Identities=6% Similarity=-0.044 Sum_probs=78.5
Q ss_pred EEEEEeCCCeEEEEECCCCee-eeEecCCCCceeEEEEecCCCeEEEEEeeCCCeEEEEECC---C----CeeeE---Ee
Q psy6127 235 LLISCSDDDQIIIYDCEQGTS-KNTINSKKYGVDLIKFTHSKTTAIHASTKVDATLRYLSLH---D----NKYVR---YF 303 (515)
Q Consensus 235 ~lasgs~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~---~----~~~~~---~~ 303 (515)
..++.+.+|.|+--....-.. ...++.. +.+..+......+.+++++ ..|.++-+... . |.++. .+
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T--~~Gr~~~~~~~elp~~r~~G~~i~~~i~L 80 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVD--STGRSYAIDPITLPSARGQGEPLTGKLTL 80 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEE--TTSEEEEECGGGSCCSSSCCEEGGGTCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEe--CCCeEEEEEHHHCCCcCCCCeEeeeeecC
Confidence 456667777777655432111 1122322 3444444444555666666 57877665542 1 22211 12
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-------CeEEEEecCCCeeEEEEC-CCCCEEEEEECCCcEEEE
Q psy6127 304 PGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQP-------NNVGMIQLSGNKPIAAYD-PEGLAFAIGVNSDSIKLY 375 (515)
Q Consensus 304 ~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~s-~~~~~l~~g~~dg~i~i~ 375 (515)
. ....|.++....++..++.++..|.++...+..- .....+...+.+..+... .++..++..+.+|.+..+
T Consensus 81 ~-~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 81 P-PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp C-TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred C-CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 2 2356766644345667888999999999887431 112222223334344444 345678888899999988
Q ss_pred Eeec
Q psy6127 376 DVRS 379 (515)
Q Consensus 376 d~~~ 379 (515)
+...
T Consensus 160 ~~~e 163 (256)
T 1zvt_A 160 PVSD 163 (256)
T ss_dssp EGGG
T ss_pred EHHH
Confidence 8765
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=39.03 E-value=37 Score=35.27 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=27.1
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEEEEcC
Q psy6127 450 PDSQFVASGSTDGQVHIWNAERGYKVCVLDG 480 (515)
Q Consensus 450 p~g~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 480 (515)
.+..++++-+.|.++|+|++.+++++....-
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3578999999999999999999998887654
No 380
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=35.60 E-value=2.5e+02 Score=25.44 Aligned_cols=189 Identities=13% Similarity=0.073 Sum_probs=98.8
Q ss_pred CCCEEEEEeCCCeEEEEEC---CC------Ceeee---EecCCCCceeEEEEe---cCCCeEEEEEeeCCCeEEEEECCC
Q psy6127 232 DGSLLISCSDDDQIIIYDC---EQ------GTSKN---TINSKKYGVDLIKFT---HSKTTAIHASTKVDATLRYLSLHD 296 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~---~~------~~~~~---~~~~~~~~v~~~~~~---~~~~~l~~~s~~~d~~v~vwd~~~ 296 (515)
....|+..+..|.+.-... .. |.++. .+. ....|..+... .++..+++++ .+|.++-..+..
T Consensus 52 ~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T--~~G~~Krt~l~e 128 (307)
T 1zi0_A 52 THDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMAT--ANGTVKKTVLTE 128 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEE--TTSEEEEEEGGG
T ss_pred CCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEe--CCCeEEEEEHHH
Confidence 3445666666777555543 22 22221 122 22345555432 3455677776 799999887642
Q ss_pred -------CeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-------CeEEEE--ecCCCeeEEEECCCC
Q psy6127 297 -------NKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQP-------NNVGMI--QLSGNKPIAAYDPEG 360 (515)
Q Consensus 297 -------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~--~~~~~~~~~~~s~~~ 360 (515)
+.....+..+ +.+..+....+...++..+.+|.+..++...- .-+..+ .....+..+...+++
T Consensus 129 ~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~ 207 (307)
T 1zi0_A 129 FNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD 207 (307)
T ss_dssp GTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSS
T ss_pred hhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCC
Confidence 2222233444 55655555555567888888998888876421 112222 223345555444556
Q ss_pred CEEEEEECCCcEEEEEeecCCCCC-----ceeeecCCCCCcCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy6127 361 LAFAIGVNSDSIKLYDVRSYDKGP-----FASFKCPGERGCEWTGLKFSPDGKLILVSTNGSIIRLFDAF 425 (515)
Q Consensus 361 ~~l~~g~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~i~~l~~sp~~~~l~~~s~dg~i~iwd~~ 425 (515)
..+++.+..|..+-.++....... ...... ......+-.+....+...++..+.+|.+.-++..
T Consensus 208 ~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~-~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 208 GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKV-TERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp CEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCC-CTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred CEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEe-cCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 678888999999988875533110 111111 1222334343332333445556666665555543
No 381
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=31.56 E-value=3e+02 Score=25.03 Aligned_cols=145 Identities=12% Similarity=0.086 Sum_probs=85.3
Q ss_pred CCCEEEEEeCCCeEEEEECCC---------Cee---eeEecCCCCceeEEEEec---CCCeEEEEEeeCCCeEEEEECCC
Q psy6127 232 DGSLLISCSDDDQIIIYDCEQ---------GTS---KNTINSKKYGVDLIKFTH---SKTTAIHASTKVDATLRYLSLHD 296 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~~~---------~~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~s~~~d~~v~vwd~~~ 296 (515)
....++..+..|.++-..... |.. ...+.. ...|..+...+ +...+++++ ..|.++...+..
T Consensus 57 ~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T--~~G~~kr~~l~~ 133 (312)
T 1suu_A 57 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTT--ASGKIARFESTD 133 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEE--TTSEEEEEEGGG
T ss_pred CCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEe--CCCeEEEEEHHH
Confidence 344566677778776665431 111 111222 23344443333 456677776 699999887643
Q ss_pred -------CeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------CCeEEEEec--CCCeeEEEECCCC
Q psy6127 297 -------NKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQ-------PNNVGMIQL--SGNKPIAAYDPEG 360 (515)
Q Consensus 297 -------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~--~~~~~~~~~s~~~ 360 (515)
|.....+.. .+.+..+....++..++..+.+|.+..+.... ..-+..+.. ...+..+..-.++
T Consensus 134 ~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~ 212 (312)
T 1suu_A 134 FKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 212 (312)
T ss_dssp GCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTC
T ss_pred hhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCC
Confidence 222333443 45666666655566788899999998887743 112222322 3344555454556
Q ss_pred CEEEEEECCCcEEEEEeecC
Q psy6127 361 LAFAIGVNSDSIKLYDVRSY 380 (515)
Q Consensus 361 ~~l~~g~~dg~i~i~d~~~~ 380 (515)
..+++.+..|..+..++...
T Consensus 213 ~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 213 PYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp SEEEEEETTSEEEEEEGGGS
T ss_pred CeEEEEECCCceEEEEHHHh
Confidence 67888899999999988654
No 382
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=25.76 E-value=2.2e+02 Score=21.56 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=32.2
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCCEEEEcCC
Q psy6127 454 FVASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFWIPT 511 (515)
Q Consensus 454 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~dv~iW~~~ 511 (515)
..+.-..||.+.++|- .+..+-.-..........+.+.++|.+++.. ..+|.-.
T Consensus 63 ~~l~l~~dGNLVl~d~-~~~~lW~S~~~~~~g~~~l~l~~~Gnlvl~~---~~~W~Sg 116 (119)
T 1b2p_A 63 CRAVLQPDGVLVVITN-ENVTVWQSPVAGKAGHYVLVLQPDRNVVIYG---DALWATQ 116 (119)
T ss_dssp CEEEECTTSCEEEECT-TCCEEEECSCCCCSSCEEEEECTTSCEEEEE---SEEEECC
T ss_pred eEEEEccCCEEEEEeC-CCcEEEcCCCCCCCCCEEEEEECCCcEEEEC---ccEeCCC
Confidence 3455567898999884 4554443332122235678888888866544 2677644
No 383
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=24.86 E-value=4.4e+02 Score=24.80 Aligned_cols=234 Identities=8% Similarity=-0.022 Sum_probs=0.0
Q ss_pred EEEecCCCeEEEEEeeCCCeEEEEECCC------------CeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEE-
Q psy6127 269 IKFTHSKTTAIHASTKVDATLRYLSLHD------------NKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDK-TVRVW- 334 (515)
Q Consensus 269 ~~~~~~~~~l~~~s~~~d~~v~vwd~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-~i~iw- 334 (515)
+..+.-..+.++.. .|+.|+.|-... ..+...-......|..++.- ..+.+.-..|+ .|..|
T Consensus 19 ~~ia~G~~hs~al~--~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 19 LIISAGASHSVALL--SGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp EEEEECSSEEEEEE--TTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEEEEE
T ss_pred EEEecCCCeEEEEE--eCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEEEEc
Q ss_pred ----------EcCCCCeEEEEecCCCeeEEEECCCCCEEEEEECCCcEEEEEeec-------CCCCCceeeecCCCCCcC
Q psy6127 335 ----------DLRQPNNVGMIQLSGNKPIAAYDPEGLAFAIGVNSDSIKLYDVRS-------YDKGPFASFKCPGERGCE 397 (515)
Q Consensus 335 ----------d~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~ 397 (515)
+.........+..........++......++-..+|.|..|-... ..................
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~ 174 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR 174 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCC
T ss_pred CCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCc
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcee-------EEeeccccCCCCCEEEEEecCCCEEEEEeCCCcEEEE---
Q psy6127 398 WTGLKFSPDGKLILVSTNGSIIRLFDAFNGNCV-------QSLSGVLNNNASPLEATFTPDSQFVASGSTDGQVHIW--- 467 (515)
Q Consensus 398 i~~l~~sp~~~~l~~~s~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~i~~~~~sp~g~~l~sgs~dg~I~iw--- 467 (515)
|..++. ...+.++-..+|.++.|-....-.+ ..............-........+.+.-..+|.|+.|
T Consensus 175 i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 175 IKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWS 252 (406)
T ss_dssp EEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred EEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCC
Q ss_pred --------ECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCCEEEE
Q psy6127 468 --------NAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFW 508 (515)
Q Consensus 468 --------d~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~dv~iW 508 (515)
+.........+.......|..++-.....++++.++.+..|
T Consensus 253 ~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~w 301 (406)
T 4d9s_A 253 KYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGW 301 (406)
T ss_dssp TTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEe
No 384
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.50 E-value=4.3e+02 Score=24.16 Aligned_cols=145 Identities=6% Similarity=0.020 Sum_probs=80.7
Q ss_pred CCCEEEEEeCCCeEEEEECC---------CCeeeeE-ecC-CCCceeEEEEecC---CCeEEEEEeeCCCeEEEEECCC-
Q psy6127 232 DGSLLISCSDDDQIIIYDCE---------QGTSKNT-INS-KKYGVDLIKFTHS---KTTAIHASTKVDATLRYLSLHD- 296 (515)
Q Consensus 232 d~~~lasgs~dg~i~iwd~~---------~~~~~~~-~~~-~~~~v~~~~~~~~---~~~l~~~s~~~d~~v~vwd~~~- 296 (515)
....|+..+..|.+.-.... .|.++.. +.- ....|..+...++ +.++++++ .+|.++...+..
T Consensus 49 t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T--~~G~iKrt~l~e~ 126 (323)
T 1wp5_A 49 TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVT--RNGMVKKTELKHY 126 (323)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEE--TTSEEEEEEGGGG
T ss_pred CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEe--CCCeEEEeEHHHh
Confidence 34456666677776555432 1332211 111 1234554433332 55677776 799999987642
Q ss_pred -------CeeeEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------CCeEEEEe--cCCCeeEEEECCCC
Q psy6127 297 -------NKYVRYFPGHVRKVSSLNLSPVDDSFISGSYDKTVRVWDLRQ-------PNNVGMIQ--LSGNKPIAAYDPEG 360 (515)
Q Consensus 297 -------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~--~~~~~~~~~~s~~~ 360 (515)
|.....+... +.+..+........++..+.+|.+..++... .+-+..+. ....+..+..-+++
T Consensus 127 ~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~ 205 (323)
T 1wp5_A 127 KAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSK 205 (323)
T ss_dssp CCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCT
T ss_pred hhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCC
Confidence 2222233322 5565655555566788888999988887642 11222222 23334444333344
Q ss_pred C-EEEEEECCCcEEEEEeec
Q psy6127 361 L-AFAIGVNSDSIKLYDVRS 379 (515)
Q Consensus 361 ~-~l~~g~~dg~i~i~d~~~ 379 (515)
. .+++.+..|..+..++..
T Consensus 206 ~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 206 DESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp TCEEEEEETTSEEEEEEGGG
T ss_pred CcEEEEEECCCceEEEEHHH
Confidence 4 788888999988888766
No 385
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=22.62 E-value=2.4e+02 Score=20.90 Aligned_cols=53 Identities=8% Similarity=0.128 Sum_probs=30.1
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEcCCCCCCeEEEEECCCCCEEEEeeCCEEEEcCC
Q psy6127 455 VASGSTDGQVHIWNAERGYKVCVLDGDHPSAVQSLQFNPKYHMLASACSNMAFWIPT 511 (515)
Q Consensus 455 l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp~~~~las~~~dv~iW~~~ 511 (515)
.+.-..||.+.++|- .+..+-.-.......-..+.+.++|.+++..+ .+|.-.
T Consensus 54 ~l~l~~dGNLVl~~~-~~~~~W~S~t~~~~g~~~l~l~~dGnlvl~~~---~~W~S~ 106 (110)
T 3a0c_A 54 RLTLHNNGNLVIYDQ-SNRVIWQTKTNGKEDHYVLVLQQDRNVVIYGP---VVWATG 106 (110)
T ss_dssp EEEECTTSCEEEECT-TCCEEEECCCCCSSSCCEEEECTTSCEEEECS---EEEECS
T ss_pred EEEEeCCCCEEEECC-CCcEEEecCCCCCCCCEEEEEeCCccEEEECC---CEecCC
Confidence 444557888888875 34444332221222344677788888666432 577643
No 386
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=20.97 E-value=7e+02 Score=25.75 Aligned_cols=101 Identities=15% Similarity=0.044 Sum_probs=53.0
Q ss_pred ceeEEEEecCCCeEEEEEeeCCCeEEEEECCCCeeeEEecCC-------CCCeEEEEEcCCC-CEEEEEeCC-------C
Q psy6127 265 GVDLIKFTHSKTTAIHASTKVDATLRYLSLHDNKYVRYFPGH-------VRKVSSLNLSPVD-DSFISGSYD-------K 329 (515)
Q Consensus 265 ~v~~~~~~~~~~~l~~~s~~~d~~v~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~-~~l~s~s~d-------g 329 (515)
.|..++++|.....+++.. ..+.|...+-. ++.-..+..+ ...|.+++++|.+ +.++.+... +
T Consensus 24 ~i~~i~~~p~~~~~~~~~~-~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARA-AIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp CCCEEEECSSSTTCEEEEC-SSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred eeeEEEECCCCCCEEEEEe-cCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 7999999998654455542 35666655532 3222222221 2459999999843 344444321 1
Q ss_pred cEEEEE-cCCCCeEEEEecC----------CCeeEEEECCC-CCEEEEEE
Q psy6127 330 TVRVWD-LRQPNNVGMIQLS----------GNKPIAAYDPE-GLAFAIGV 367 (515)
Q Consensus 330 ~i~iwd-~~~~~~~~~~~~~----------~~~~~~~~s~~-~~~l~~g~ 367 (515)
...+|. .+.++.-...... ..+..++++|. .+.+.++.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 234443 3344443333221 11357888885 35666665
Done!