Query psy6128
Match_columns 529
No_of_seqs 66 out of 68
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 18:21:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mlc_A FG41 malonate semialdeh 52.2 14 0.00049 31.5 4.2 39 308-346 62-100 (136)
2 1wx7_A Ubiquilin 3; ubiquitin- 45.1 33 0.0011 27.4 5.1 67 235-309 31-97 (106)
3 2kj6_A Tubulin folding cofacto 39.6 40 0.0014 27.6 4.8 51 237-290 33-88 (97)
4 3n3k_B Ubiquitin; hydrolase, p 35.8 65 0.0022 23.8 5.1 61 236-304 19-79 (85)
5 3k9o_B Ubiquitin, UBB+1; E2-25 33.7 62 0.0021 24.8 4.9 63 235-305 16-78 (96)
6 2aal_A Malonate semialdehyde d 32.3 44 0.0015 27.5 4.0 37 310-347 65-102 (131)
7 2apl_A Hypothetical protein PG 32.2 21 0.00073 33.0 2.3 21 327-347 127-151 (157)
8 1ndd_A NEDD8, protein (ubiquit 31.6 1E+02 0.0035 22.0 5.4 61 236-304 16-76 (76)
9 3a9j_A Ubiquitin; protein comp 31.6 1.1E+02 0.0039 21.7 5.7 62 235-304 15-76 (76)
10 1we6_A Splicing factor, putati 30.1 55 0.0019 26.4 4.2 61 236-304 46-107 (111)
11 1wy8_A NP95-like ring finger p 29.6 67 0.0023 24.3 4.4 60 237-304 26-85 (89)
12 1yqb_A Ubiquilin 3; structural 29.3 61 0.0021 26.0 4.3 61 236-304 37-97 (100)
13 2opa_A Probable tautomerase YW 27.3 32 0.0011 24.2 2.1 36 313-348 2-38 (61)
14 1sif_A Ubiquitin; hydrophobic 26.9 64 0.0022 24.9 3.9 61 236-304 25-85 (88)
15 1mww_A Hypothetical protein HI 26.5 32 0.0011 28.1 2.2 38 310-347 58-96 (128)
16 1yx5_B Ubiquitin; proteasome, 26.5 1.1E+02 0.0037 23.8 5.2 61 236-304 16-76 (98)
17 1otf_A 4-oxalocrotonate tautom 26.2 34 0.0012 24.0 2.1 35 314-348 3-38 (62)
18 1uel_A HHR23B, UV excision rep 25.7 64 0.0022 25.3 3.7 58 236-301 16-76 (95)
19 3ge5_A Putative NAD(P)H:FMN ox 25.7 43 0.0015 29.6 3.0 35 388-432 36-70 (198)
20 3dbh_I NEDD8; cell cycle, acti 25.3 61 0.0021 24.2 3.4 64 233-304 25-88 (88)
21 4fbj_B NEDD8; effector-HOST ta 24.9 73 0.0025 24.6 3.9 61 236-304 16-76 (88)
22 2kan_A Uncharacterized protein 24.8 69 0.0023 25.4 3.8 65 232-304 26-91 (94)
23 3abf_A 4-oxalocrotonate tautom 24.1 39 0.0013 24.0 2.0 35 313-347 3-38 (64)
24 1wh3_A 59 kDa 2'-5'-oligoadeny 24.0 85 0.0029 23.5 4.0 62 235-304 22-83 (87)
25 1v6e_A Cytoskeleton-associated 22.9 97 0.0033 24.3 4.3 50 237-289 25-79 (95)
26 2ojr_A Ubiquitin; lanthide-bin 22.7 1.1E+02 0.0038 24.7 4.7 60 237-304 52-111 (111)
27 4hcn_B Polyubiquitin, ubiquiti 22.6 90 0.0031 24.5 4.1 61 236-304 38-98 (98)
28 2b67_A COG0778: nitroreductase 22.0 52 0.0018 27.8 2.7 33 390-432 14-46 (204)
29 2wkb_A Macrophage migration in 21.4 53 0.0018 26.9 2.6 38 310-347 56-94 (125)
30 3b64_A Macrophage migration in 21.3 55 0.0019 26.1 2.6 38 310-347 56-94 (112)
31 3phx_B Ubiquitin-like protein 21.0 1.5E+02 0.0051 21.8 4.8 60 235-302 19-78 (79)
32 2kdi_A Ubiquitin, vacuolar pro 21.0 1.9E+02 0.0065 23.6 5.9 61 236-304 25-85 (114)
33 2jry_A R11.6, I-superfamily co 20.6 19 0.00066 27.6 -0.2 8 374-381 37-44 (46)
34 2xcz_A Possible ATLS1-like lig 20.6 70 0.0024 25.5 3.1 37 311-347 57-94 (115)
35 3mtn_B UBA80, ubcep1, ubiquiti 20.3 1.3E+02 0.0044 22.1 4.3 61 236-304 19-79 (85)
No 1
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=52.20 E-value=14 Score=31.47 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=32.9
Q ss_pred cceeEEEEEEEecCCCCCCchhHHHHHHHhhhcCCCCCc
Q psy6128 308 STAWIVVVIVAWEGVPLNQSDGVYAILTNKLNKYGLPTT 346 (529)
Q Consensus 308 ~tAviVv~Iv~WeGIp~~~AD~lY~eLt~~L~kyG~pT~ 346 (529)
...+++|-|-+++|-+.+.-..||.+||+.|...|.|-.
T Consensus 62 s~~~v~I~I~~~~gRt~EqK~~L~~~it~~l~~lg~~~~ 100 (136)
T 3mlc_A 62 SPSVVIIHVFTQAGRTIETKQRVFAAITESLAPIGVAGS 100 (136)
T ss_dssp CSCCEEEEEEEETTCCHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred CCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 457888999999999999999999999999944487753
No 2
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.11 E-value=33 Score=27.41 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=47.7
Q ss_pred ccCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCCCcccc
Q psy6128 235 THLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQGHTCST 309 (529)
Q Consensus 235 THLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~GH~C~t 309 (529)
-.+..-.+|+.|++.+++++|..=..+|+ +|-||.=+ ....++.+-|.. ...|.+++|.|.|-....
T Consensus 31 l~v~~~~TV~~LK~~I~~~~gip~~~qrL---i~~Gk~L~--D~~tL~~~gi~~---g~~i~l~~~~~~~~~~~~ 97 (106)
T 1wx7_A 31 FSVTDTCTIQQLKEEISQRFKAHPDQLVL---IFAGKILK--DPDSLAQCGVRD---GLTVHLVIKRQHRAMGNE 97 (106)
T ss_dssp EEEETTCCHHHHHHHHHHHHTCCTTTEEE---EETTEECC--TTSCHHHHTCCT---TEEEEEEECCCCCSCCCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChhhEEE---EECCEECC--CcCcHHHcCCCC---CCEEEEEEcCCCCCCCCC
Confidence 34555678999999999999988777776 68876532 345566665543 346778888888876543
No 3
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=39.58 E-value=40 Score=27.60 Aligned_cols=51 Identities=10% Similarity=0.179 Sum_probs=37.6
Q ss_pred CCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCc-----CCCCccceeeeecCC
Q psy6128 237 LGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKT-----TQGCPLAKWVIRRAS 290 (529)
Q Consensus 237 LGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKS-----SqGCPiAKWVIRRss 290 (529)
+...-+|+.|.+.+|.++|..-..-|+ +|-|+.||- ..+=+++.+=|...+
T Consensus 33 v~~~~TV~~LK~kIe~~~Gip~~~QrL---i~~g~~g~~~~~L~~D~~tL~~Y~I~~g~ 88 (97)
T 2kj6_A 33 FSPQMSVEAVKEKLWKKCGTSVNSMAL---ELYDDSGSKVAVLSDDSRPLGFFSPFDGF 88 (97)
T ss_dssp ECTTCCHHHHHHHHHHHHCCCTTSEEE---EEECSSSCBCCCSSGGGSCHHHHCCCSCC
T ss_pred eCCCChHHHHHHHHHHHHCcCHHHeEE---EEecCCCcccceecCCcCCHHHCCCCCCC
Confidence 345578999999999999999988886 678887762 445556666554443
No 4
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=35.76 E-value=65 Score=23.80 Aligned_cols=61 Identities=20% Similarity=0.466 Sum_probs=41.3
Q ss_pred cCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 236 HLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 236 HLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
.+..-.+|++|++.+++++|..=...| ++|-|+.=+.++ .++..=|. +...|.+++|.|-|
T Consensus 19 ~v~~~~tV~~lK~~i~~~~~ip~~~qr---L~~~g~~L~d~~--tL~~~~i~---~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 19 EVEPSDTIENVKAKIQDKEGIPPDQQR---LIFAGKQLEDGR--TLSDYNIH---NHSALYLLLKLRGG 79 (85)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGEE---EEETBEECCTTC--BTTTTTCC---TTCEEEEEECCC--
T ss_pred EECCCCcHHHHHHHHHHHHCCCHHHEE---EEECCeECCCCC--CHHHCCCC---CCCEEEEEEeccCC
Confidence 456677999999999999998777765 578887543322 44444443 23478888888766
No 5
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=33.70 E-value=62 Score=24.79 Aligned_cols=63 Identities=17% Similarity=0.430 Sum_probs=44.1
Q ss_pred ccCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCCC
Q psy6128 235 THLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQGH 305 (529)
Q Consensus 235 THLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~GH 305 (529)
-.+..-.+|+.|++.+++++|..=..+| ++|-|+.=+. .-.++..=|... -.|.+++|.|-|-
T Consensus 16 ~~v~~~~TV~~LK~~i~~~~gip~~~qr---L~~~G~~L~d--~~tL~~~~i~~~---~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 16 LEVEPSDTIENVKAKIQDKEGIPPDQQR---LIFAGKQLED--GRTLSDYNIQKE---STLHLVLRLRGYA 78 (96)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEE---EEETTEECCT--TSBTGGGTCCTT---CEEEEEECCCC--
T ss_pred EEECCCCCHHHHHHHHHhhhCCChhHEE---EEECCEECCC--CCcHHHcCCCCC---CEEEEEEEcCCCC
Confidence 3466677899999999999998777765 4688886543 336666655433 3688888888773
No 6
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=32.34 E-value=44 Score=27.53 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=30.7
Q ss_pred eeEEEEEEEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6128 310 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 347 (529)
Q Consensus 310 AviVv~Iv~WeGIp~~~AD~lY~eLt~~L~ky-G~pT~R 347 (529)
.+++|-|. +.|...+.-.+||..|++.|.+. |.|-.+
T Consensus 65 ~~~~I~i~-~~grt~eqK~~l~~~l~~~l~~~lg~~~~~ 102 (131)
T 2aal_A 65 AVVLLTVI-SRPRSEEQKVCFYKLLTGALERDCGISPDD 102 (131)
T ss_dssp TCEEEEEE-ESCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CeEEEEEE-eCCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 45666677 99998888999999999999986 887654
No 7
>2apl_A Hypothetical protein PG0816; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG, U function; 2.01A {Porphyromonas gingivalis} SCOP: a.258.1.1
Probab=32.24 E-value=21 Score=32.96 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=16.9
Q ss_pred chhHHHHHHHhh----hcCCCCCcc
Q psy6128 327 SDGVYAILTNKL----NKYGLPTTR 347 (529)
Q Consensus 327 AD~lY~eLt~~L----~kyG~pT~R 347 (529)
-|+||+|||.++ .+||+||.+
T Consensus 127 yd~LYTELTGtI~l~iEenGl~~~~ 151 (157)
T 2apl_A 127 YEHLYTELTGTIVLLIESNHLPTIG 151 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCC-
T ss_pred hhHHHHHHhhHHHHHHHhcCCcccc
Confidence 489999999975 578999965
No 8
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=31.56 E-value=1e+02 Score=21.98 Aligned_cols=61 Identities=21% Similarity=0.408 Sum_probs=42.4
Q ss_pred cCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 236 HLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 236 HLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
.+..-.+|+.|++.++++.|..-..+|+ +|-|+.=+ ....++..=|.. ...|.+++|.|-|
T Consensus 16 ~v~~~~tv~~lK~~i~~~~~i~~~~q~L---~~~g~~L~--d~~tL~~~~i~~---g~~i~l~~~~~GG 76 (76)
T 1ndd_A 16 DIEPTDKVERIKERVEEKEGIPPQQQRL---IYSGKQMN--DEKTAADYKILG---GSVLHLVLALRGG 76 (76)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGEEE---EETTEECC--TTSBGGGGTCCT---TCEEEEEECCC--
T ss_pred EECCCChHHHHHHHHHHHHCcChHHEEE---EECCEECC--CCCcHHHcCCCC---CCEEEEEEeCCCC
Confidence 4566688999999999999998887775 68777533 345666665543 3467777777654
No 9
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=31.56 E-value=1.1e+02 Score=21.71 Aligned_cols=62 Identities=21% Similarity=0.513 Sum_probs=43.4
Q ss_pred ccCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 235 THLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 235 THLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
-.+..-.+|+.|++.+++++|..-..+|+ +|-|+.=+ ....++..=|... ..|.+++|.|-|
T Consensus 15 i~v~~~~tv~~lK~~i~~~~~i~~~~q~L---~~~g~~L~--d~~tL~~~~i~~g---~~i~l~~~~~GG 76 (76)
T 3a9j_A 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRL---IFAGKQLE--DGRTLSDYNIQRE---STLHLVLRLRGG 76 (76)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEE---EETTEECC--TTCBTGGGTCCTT---CEEEEEECCCCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEE---EECCeECC--CCCcHHHcCCCCC---CEEEEEEeCCCC
Confidence 34666789999999999999988777765 68776532 2456666655433 367777777654
No 10
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=30.07 E-value=55 Score=26.41 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=44.6
Q ss_pred cCCC-CCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 236 HLGA-AASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 236 HLGa-gpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
.+.. -.+|+.|.+.++..+|..-...|+ +|.||.=+ .+..++.+-|... ..|.+++|.|-|
T Consensus 46 ~v~~l~~TV~~LK~~I~~~~gip~~~QrL---~~~Gk~L~--D~~tL~~y~I~~g---~~l~l~~r~~GG 107 (111)
T 1we6_A 46 TVQSLSENVGSLKEKIAGEIQIPANKQKL---SGKAGFLK--DNMSLAHYNVGAG---EILTLSLRERSG 107 (111)
T ss_dssp EESCSSSBHHHHHHHHHHHTTCCTTTSEE---ECSSSBCC--TTSBTTTTTCSSS---CEEEEECSSCCS
T ss_pred EecCCCCcHHHHHHHHHHHHCCCHHHeEE---EECCEECC--CCCcHHHCCCCCC---CEEEEEEEcCCC
Confidence 4554 679999999999999988888775 67776433 3567777766543 367778887766
No 11
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.61 E-value=67 Score=24.28 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=44.1
Q ss_pred CCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 237 LGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 237 LGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
+..-.+|+.|++.++++.|..-...|+ +|-||.=+ ....++.+-|... -.|.+++|.|-|
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~qrL---~~~gk~L~--d~~tL~~~~i~~g---~~i~l~~~~~gG 85 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQRL---FYRGKQLE--NGYTLFDYDVGLN---DIIQLLVRPDSG 85 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTEEE---EETTEECC--SSSBHHHHTCCTT---CEEEEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhEEE---EECCeECC--CCCCHHHCCCCCC---CEEEEEEeCCCC
Confidence 667789999999999999988777775 67776532 4567777666543 367777777766
No 12
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=29.34 E-value=61 Score=25.98 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=42.1
Q ss_pred cCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 236 HLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 236 HLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
.+..-.+|+.|++.++++.|..=..+|+ +|-||.=+ ....++..-|... -.|.+++|.|.|
T Consensus 37 ~v~~~~TV~~LK~~I~~~~gip~~~QrL---i~~Gk~L~--D~~tL~~ygI~~g---stI~l~~r~~~~ 97 (100)
T 1yqb_A 37 SVTDTCTIQQLKEEISQRFKAHPDQLVL---IFAGKILK--DPDSLAQCGVRDG---LTVHLVIKRQHR 97 (100)
T ss_dssp EEETTCBHHHHHHHHHHHHTCCGGGEEE---EETTEECC--TTSBHHHHTCCTT---CEEEEEECCCCS
T ss_pred EECCCCcHHHHHHHHHHHHCcChhhEEE---EECCEECC--CcCcHHHCCCCCC---CEEEEEEcCCCC
Confidence 3445578999999999999988777776 68876532 3456666655443 356666676654
No 13
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=27.25 E-value=32 Score=24.17 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=29.8
Q ss_pred EEEEEEecCCCCCCchhHHHHHHHhhhcC-CCCCccc
Q psy6128 313 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTRR 348 (529)
Q Consensus 313 Vv~Iv~WeGIp~~~AD~lY~eLt~~L~ky-G~pT~RR 348 (529)
+|-|-++.|.+.+.-.+|+..|++.|.+. |.|-.+.
T Consensus 2 ~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v 38 (61)
T 2opa_A 2 YVTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKI 38 (61)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeE
Confidence 35567789999999999999999999986 9886543
No 14
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=26.90 E-value=64 Score=24.89 Aligned_cols=61 Identities=21% Similarity=0.535 Sum_probs=39.2
Q ss_pred cCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 236 HLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 236 HLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
.+..-.+|+.|++.+++++|..-..+|+ +|-||.=+ ....++..=|... -.|.+++|.|-|
T Consensus 25 ~v~~~~TV~~LK~~I~~~~gip~~~qrL---~~~Gk~L~--D~~tL~~~gi~~g---~~i~l~~r~~GG 85 (88)
T 1sif_A 25 EMEPSDTIENLKAKIQDKEGIPPDQQRL---IFAGKQLE--DGRTLSDYNIQKE---STLHLVLRLRGG 85 (88)
T ss_dssp ECCTTSBHHHHHHHHHHHHCCCGGGCEE---EETTEECC--TTSBSGGGTCCTT---CEEEEEC-----
T ss_pred EECCCChHHHHHHHHHHHHCcChhhEEE---EECCEECC--CCCcHHHcCCCCC---CEEEEEEeCCCC
Confidence 3455678999999999999988888776 68776432 3455666555433 356677777655
No 15
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=26.54 E-value=32 Score=28.11 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=32.3
Q ss_pred eeEEEEEEEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6128 310 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 347 (529)
Q Consensus 310 AviVv~Iv~WeGIp~~~AD~lY~eLt~~L~ky-G~pT~R 347 (529)
.+++|-|.+++|...+.-.+||.+|++.|.+. |.|-.+
T Consensus 58 ~~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg~~~~~ 96 (128)
T 1mww_A 58 DYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHD 96 (128)
T ss_dssp TCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhh
Confidence 45667778899999999999999999999985 888754
No 16
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=26.49 E-value=1.1e+02 Score=23.85 Aligned_cols=61 Identities=21% Similarity=0.537 Sum_probs=43.6
Q ss_pred cCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 236 HLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 236 HLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
.+..-.+|+.|++.++++.|..-..+|+ +|-||.=+ ....++..-|.. ...|.+++|.+-|
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gi~~~~qrL---~~~Gk~L~--D~~tL~~~gi~~---g~~i~l~~~~~gG 76 (98)
T 1yx5_B 16 EVEPSDTIENVKAKIQDKEGIPPDQQRL---IFAGKQLE--DGRTLSDYNIQK---ESTLHLVLRLRGG 76 (98)
T ss_dssp ECCTTCBHHHHHHHHHHHTCCCGGGEEE---EETTEECC--TTSBTGGGTCCT---TCEEEEEECCCCC
T ss_pred EECCCCcHHHHHHHHHHHHCcChhhEEE---EECCEECC--CCCCHHHcCCCC---CCEEEEEEeCCCC
Confidence 3455678999999999999988777775 68777533 345666665543 3367777887766
No 17
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=26.15 E-value=34 Score=24.01 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=29.5
Q ss_pred EEEEEecCCCCCCchhHHHHHHHhhhcC-CCCCccc
Q psy6128 314 VVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTRR 348 (529)
Q Consensus 314 v~Iv~WeGIp~~~AD~lY~eLt~~L~ky-G~pT~RR 348 (529)
|-|-+++|.+.+.-..|+..|++.|.+. |.|-.+.
T Consensus 3 i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v 38 (62)
T 1otf_A 3 AQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERV 38 (62)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 4567789999999999999999999986 9987543
No 18
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.68 E-value=64 Score=25.26 Aligned_cols=58 Identities=17% Similarity=0.406 Sum_probs=36.6
Q ss_pred cCCCCCChHHHHHHHHHhcc---ccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEee
Q psy6128 236 HLGAAASLPDLRKDIEERSG---YKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKH 301 (529)
Q Consensus 236 HLGagpsvaaiRe~mE~R~G---~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~ 301 (529)
.+..-.+|+.|++.++.++| ..-...| ++|-||.=+ .+..++..-|...+ .|.++++.
T Consensus 16 ~v~~~~TV~~LK~~I~~~~~~~gip~~~qr---Li~~Gk~L~--D~~tL~~ygI~~g~---~i~l~~~~ 76 (95)
T 1uel_A 16 DIDPEETVKALKEKIESEKGKDAFPVAGQK---LIYAGKILN--DDTALKEYKIDEKN---FVVVMVTK 76 (95)
T ss_dssp ECCTTSBHHHHHHHHHHHHCTTTCCTTTEE---EEETTEECC--TTSBGGGGTCCSSS---EEEEEESS
T ss_pred EECCCCHHHHHHHHHHhhcccCCCChhhEE---EEECCEECC--CcCcHHHCCCCCCC---EEEEEEeC
Confidence 45566789999999999954 4445555 478887532 34566665554332 45555544
No 19
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83}
Probab=25.65 E-value=43 Score=29.55 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=22.7
Q ss_pred cccccceeeccCchhhHHHHHHHHHHHHhHhHHHhhhCchhhhhh
Q psy6128 388 RSKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 432 (529)
Q Consensus 388 RSk~pRkFrL~~~~eE~~Le~~lq~LAT~lAPlYk~lAP~Ay~NQ 432 (529)
.-++.|+|. ...=.++.|+..|+.. +.||.+++.|
T Consensus 36 ~RrSvR~f~-~~~V~~e~l~~il~aa---------~~APS~~n~Q 70 (198)
T 3ge5_A 36 TRRSVRKFI-DRPVEEEKLMAILEAG---------RIAPSAHNYQ 70 (198)
T ss_dssp TCCCCCCBC-SCCCCHHHHHHHHHHH---------HHCCCGGGCC
T ss_pred hCcccccCC-CCCCCHHHHHHHHHHH---------HHCCCcCCCC
Confidence 334689995 3333566777777632 5778887776
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=25.28 E-value=61 Score=24.20 Aligned_cols=64 Identities=20% Similarity=0.387 Sum_probs=44.1
Q ss_pred ccccCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 233 YYTHLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 233 yYTHLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
|.-.+..-.+|+.|++.+++++|..=...| ++|-||.=+. .-.++..=|... -.|.+++|.|-|
T Consensus 25 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qr---L~~~G~~L~d--~~tL~~~~i~~~---~~i~l~~rl~GG 88 (88)
T 3dbh_I 25 IEIDIEPTDKVERIKERVEEKEGIPPQQQR---LIYSGKQMND--EKTAADYKILGG---SVLHLVLRLRGG 88 (88)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCC---EEETTEECCT--TSBGGGGTCCTT---CEEEECCCCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcCHHHEE---EEECCeECCC--CCcHHHcCCCCC---CEEEEEEeCCCC
Confidence 333566667899999999999998877775 4788876432 446666555433 367777776655
No 21
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=24.91 E-value=73 Score=24.58 Aligned_cols=61 Identities=21% Similarity=0.403 Sum_probs=40.1
Q ss_pred cCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 236 HLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 236 HLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
.+..-.+|+.|++.+++++|..=...|+ +|-|+.=+. +-.++..=|.. .-.|.+++|-|-|
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gip~~~qrL---i~~Gk~L~D--~~tL~~~~i~~---g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 16 DIEPTDKVERIKERVEEKEGIPPQQQRL---IYSGKQMND--EKTAADYKILG---GSVLHLVLALRGG 76 (88)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGCEE---EETTEECCT--TSBTTTTTCCT---TCEEEEECBCC--
T ss_pred EECCCCCHHHHHHHHHHHHCcChhHEEE---EECCeECCC--CCcHHHcCCCC---CCEEEEEEECCCC
Confidence 4555668999999999999988777764 788875432 33455444432 3366677777655
No 22
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=24.82 E-value=69 Score=25.40 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=44.1
Q ss_pred cccccCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCC-CccceeeeecCCCCceEEEEEeecCC
Q psy6128 232 SYYTHLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQG-CPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 232 pyYTHLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqG-CPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
.|--.+..-.+|+.|++.++.+.|..-...|+ +|-||.=+ .+ ..++.+-|... ..|.+++|-|.|
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL---i~~Gk~L~--D~~~tL~~ygI~~g---stl~lv~r~~gg 91 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQL---YYSGIELA--DDYRNLNEYGITEF---SEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEE---EETTEEEC--CTTSBHHHHTCCTT---EEEEEEECCCSS
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE---EECCEECC--CCcccHHHCCCCCC---CEEEEEEeCCCC
Confidence 34445566678999999999999998888877 58876421 23 45666555433 356666777665
No 23
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=24.07 E-value=39 Score=23.98 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=28.6
Q ss_pred EEEEEEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6128 313 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 347 (529)
Q Consensus 313 Vv~Iv~WeGIp~~~AD~lY~eLt~~L~ky-G~pT~R 347 (529)
+|-|-++.|...+.-..|+.+|++.|.+. |.|-.+
T Consensus 3 ~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~ 38 (64)
T 3abf_A 3 VLKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEE 38 (64)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 45566789988888899999999999984 888654
No 24
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.04 E-value=85 Score=23.50 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=43.4
Q ss_pred ccCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 235 THLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 235 THLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
-.+..-.+|+.|++.++++.|..=...|+ +|-|+.=+ ....++..=|.. .-.|.+++|.|-|
T Consensus 22 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL---~~~Gk~L~--d~~tL~~~~i~~---g~~i~l~~~~~GG 83 (87)
T 1wh3_A 22 YAINPNSFILGLKQQIEDQQGLPKKQQQL---EFQGQVLQ--DWLGLGIYGIQD---SDTLILSKKKGSG 83 (87)
T ss_dssp EEECSSSBHHHHHHHHHHHTCCCTTTEEE---EETTEECC--SSSBHHHHTCCT---TEEEEEEECSCCC
T ss_pred EEeCCCChHHHHHHHHHHHhCCChHHEEE---EECCEEcc--CCCCHHHCCCCC---CCEEEEEEeccCC
Confidence 34556678999999999999988787776 68876532 345566655543 3357777777765
No 25
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.86 E-value=97 Score=24.34 Aligned_cols=50 Identities=10% Similarity=0.244 Sum_probs=36.8
Q ss_pred CCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCc-----CCCCccceeeeecC
Q psy6128 237 LGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKT-----TQGCPLAKWVIRRA 289 (529)
Q Consensus 237 LGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKS-----SqGCPiAKWVIRRs 289 (529)
+....+|+.|.+.++.+.|..-...|+ +|-|+.||- ..+-.++.+=|...
T Consensus 25 v~~~~TV~~lK~ki~~~~gip~~~qrL---~~~~~~g~~~~~l~~D~~tL~~y~i~~g 79 (95)
T 1v6e_A 25 YSRSLTIAEFKCKLELVVGSPASCMEL---ELYGADDKFYSKLDQEDALLGSYPVDDG 79 (95)
T ss_dssp ECTTSBHHHHHHHHHHHTCSCTTTCBC---EEECSSSCEEEECCCSSSBTTSSSCCTT
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHeEE---EEeCCCCccccccCCCcCCHhHCCCCCC
Confidence 455679999999999999999999887 567766662 34556666555433
No 26
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=22.70 E-value=1.1e+02 Score=24.65 Aligned_cols=60 Identities=20% Similarity=0.524 Sum_probs=40.9
Q ss_pred CCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 237 LGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 237 LGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
+..-.+|+.|++.++++.|..=..+|+ +|-||.=+ ....++..-|... -.|.+++|.|-|
T Consensus 52 v~~~~TV~~LK~~I~~~~gip~~~qrL---i~~Gk~L~--D~~tL~~~gI~~g---s~I~l~~rl~GG 111 (111)
T 2ojr_A 52 VEPSDTIENVKAKIQDKEGIPPDQQRL---IFAGKQLE--DGRTLSDYNIQKE---STLHLVLRLRGG 111 (111)
T ss_dssp ECTTCBHHHHHHHHHHHHCCCTTTEEE---EETTEECC--SSCBTTTTTCCTT---CEEEEEECCCC-
T ss_pred eCCCCCHHHHHHHHHHHHCcCcccEEE---EECCEECC--CCCcHHHcCCCCC---CEEEEEEeCCCC
Confidence 445578999999999999988777775 68776532 2445555545433 367777777654
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=22.58 E-value=90 Score=24.50 Aligned_cols=61 Identities=20% Similarity=0.524 Sum_probs=42.8
Q ss_pred cCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 236 HLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 236 HLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
.+..-.+|+.|++.+++++|..=...| ++|-||.=+ ..-.++..=|... -.|.+++|.|-|
T Consensus 38 ~v~~~~TV~~LK~~I~~~~gip~~~qr---Li~~Gk~L~--D~~tL~~~~i~~g---~~i~l~~rl~GG 98 (98)
T 4hcn_B 38 EVESSDTIDNVKSKIQDKEGIPPDQQR---LIFAGKQLE--DGRTLSDYNIQKE---STLHLVLRLRGG 98 (98)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGCE---EEETTEECC--TTCBSGGGTCCTT---EEEEEECBCSCC
T ss_pred EECCCCcHHHHHHHHHHHhCCChhHEE---EEECCEECC--CCCcHHHCCCCCC---CEEEEEEecCCC
Confidence 455566899999999999998777765 468888654 2345666555433 367777777755
No 28
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=22.03 E-value=52 Score=27.83 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=23.6
Q ss_pred cccceeeccCchhhHHHHHHHHHHHHhHhHHHhhhCchhhhhh
Q psy6128 390 KTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQ 432 (529)
Q Consensus 390 k~pRkFrL~~~~eE~~Le~~lq~LAT~lAPlYk~lAP~Ay~NQ 432 (529)
++.|+|. ...=.++.|+.-|+.. ++||.+++.|
T Consensus 14 rSvR~f~-~~~v~~e~l~~il~aa---------~~APS~~n~Q 46 (204)
T 2b67_A 14 HATKHFT-DKLVDPKDVRTAIEIA---------TLAPSAHNSQ 46 (204)
T ss_dssp CBCCCBC-SCCCCHHHHHHHHHHH---------TTSCCGGGCC
T ss_pred hhhhccC-CCCCCHHHHHHHHHHH---------HhCcCcccCC
Confidence 4689998 5444567777766653 6789888887
No 29
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=21.40 E-value=53 Score=26.94 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=26.4
Q ss_pred eeEEEEEEEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6128 310 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 347 (529)
Q Consensus 310 AviVv~Iv~WeGIp~~~AD~lY~eLt~~L~ky-G~pT~R 347 (529)
.+.+|-|.+.+|...+.-.+||.+|++.|.+. |+|-+|
T Consensus 56 p~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (125)
T 2wkb_A 56 GYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRR 94 (125)
T ss_dssp SCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 44455566788999999999999999999986 988765
No 30
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=21.33 E-value=55 Score=26.12 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=30.8
Q ss_pred eeEEEEEEEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6128 310 AWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 347 (529)
Q Consensus 310 AviVv~Iv~WeGIp~~~AD~lY~eLt~~L~ky-G~pT~R 347 (529)
.+++|-|.+.+|+..+.-.+||.+|++.|.+. |.|-+|
T Consensus 56 ~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (112)
T 3b64_A 56 PVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADR 94 (112)
T ss_dssp SCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 34455566778999999999999999999986 988765
No 31
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=21.00 E-value=1.5e+02 Score=21.79 Aligned_cols=60 Identities=13% Similarity=0.339 Sum_probs=41.7
Q ss_pred ccCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeec
Q psy6128 235 THLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHR 302 (529)
Q Consensus 235 THLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R 302 (529)
-.+..-.+|+.|++.+++++|..=...|+ +|-||.=+ .+..++..=|...+ .|-+++|-|
T Consensus 19 ~~v~~~~tV~~lK~~i~~~~gip~~~qrL---~~~G~~L~--d~~tL~~~~i~~~~---~l~l~~rl~ 78 (79)
T 3phx_B 19 YEVRLTQTVAHLKQQVSGLEGVQDDLFWL---TFEGKPLE--DQLPLGEYGLKPLS---TVFMNLRLR 78 (79)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGEEE---EETTEECC--TTSBGGGGTCCTTC---EEEEEECCB
T ss_pred EEECCcChHHHHHHHHHhhcCCCHHHEEE---EECCEECC--CCCcHHHCCCCCCC---EEEEEEecC
Confidence 35666779999999999999988777764 78887643 24566666555443 455555543
No 32
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=21.00 E-value=1.9e+02 Score=23.63 Aligned_cols=61 Identities=23% Similarity=0.549 Sum_probs=41.2
Q ss_pred cCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 236 HLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 236 HLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
.+..-.+|+.|++.++++.|..=...|+ +|.||.=+ ..-.++..=|.. .-.|.+++|.|-|
T Consensus 25 ~v~~~~TV~~LK~~I~~~~gip~~~qrL---i~~Gk~L~--D~~tL~~ygI~~---gstI~l~~~~~GG 85 (114)
T 2kdi_A 25 EVESSDTIDNVKSKIQDKEGIPPDQQRL---IWAGKQLE--DGRTLSDYNIQR---ESTLHLVLRLRGG 85 (114)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGEEE---EETTEECC--TTCBTTTTTCCS---SCEEEEEECCCSS
T ss_pred EECCCCcHHHHHHHHHHHHCcChHHEEE---EECCEECC--CCCcHHHCCCCC---CCEEEEEEEcCCC
Confidence 4556678999999999999988888876 68776421 233444443432 3357777777776
No 33
>2jry_A R11.6, I-superfamily conotoxin R11A; IOTA-conotoxin; HET: HYP DPN; NMR {Conus radiatus} PDB: 2p4l_A* 2jtu_A*
Probab=20.62 E-value=19 Score=27.60 Aligned_cols=8 Identities=50% Similarity=1.157 Sum_probs=7.2
Q ss_pred cceeeeee
Q psy6128 374 GCSWSMYY 381 (529)
Q Consensus 374 GCSWSMY~ 381 (529)
|||||+|+
T Consensus 37 gcst~~f~ 44 (46)
T 2jry_A 37 GCSTSSFF 44 (46)
T ss_dssp SCCCCTTS
T ss_pred CCcccceE
Confidence 89999986
No 34
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=20.59 E-value=70 Score=25.52 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=29.5
Q ss_pred eEEEEEEEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6128 311 WIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 347 (529)
Q Consensus 311 viVv~Iv~WeGIp~~~AD~lY~eLt~~L~ky-G~pT~R 347 (529)
+.+|-|-+.+|...+.-.+||.+|++.|.+. |.|-+|
T Consensus 57 ~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (115)
T 2xcz_A 57 TCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADR 94 (115)
T ss_dssp CEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 3444455678999999999999999999986 888755
No 35
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=20.27 E-value=1.3e+02 Score=22.08 Aligned_cols=61 Identities=20% Similarity=0.483 Sum_probs=42.6
Q ss_pred cCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 236 HLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 236 HLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
.+..-.+|++|++.+++++|..=...| ++|-|+.=+. .-.++..=|. +.-.|.+++|.|-|
T Consensus 19 ~v~~~~tV~~lK~~i~~~~~i~~~~qr---L~~~g~~L~d--~~tL~~~~i~---~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 19 EVEPSDTIENVKAKIQDKEGIPPDQQR---LIFAGKQLED--GRTLSDYNIQ---KWSTLFLLLRLRGG 79 (85)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGCE---EEETTEECCT--TSBTGGGTCC---TTCEEEEECCCCCC
T ss_pred EECCCCCHHHHHHHHHHHHCcChHHEE---EEECCEECCC--CCCHHHcCCC---CCCEEEEEEECcCC
Confidence 455667899999999999998877776 4688875442 2455555443 33467777787765
Done!