Query psy6128
Match_columns 529
No_of_seqs 66 out of 68
Neff 2.2
Searched_HMMs 13730
Date Fri Aug 16 18:21:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6128.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6128hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gu3a2 d.17.1.6 (A:34-98) Unc 39.9 7.6 0.00055 29.2 2.4 36 261-298 19-61 (65)
2 d2apla1 a.258.1.1 (A:2-150) Hy 39.4 6.4 0.00046 34.0 2.2 21 326-346 125-149 (149)
3 d1mwwa_ d.80.1.4 (A:) Hypothet 34.3 11 0.00081 29.1 2.7 39 309-347 57-96 (120)
4 d3d03a1 d.159.1.11 (A:1-271) G 32.1 5.9 0.00043 33.3 0.7 26 453-480 186-211 (271)
5 d1otfa_ d.80.1.1 (A:) 4-oxaloc 28.9 13 0.00093 25.9 2.0 33 313-345 2-35 (59)
6 d1ktga_ d.113.1.1 (A:) Diadeno 25.3 31 0.0023 25.3 3.8 26 241-267 44-69 (137)
7 d1wjna_ d.15.1.1 (A:) Tubulin- 25.1 26 0.0019 26.5 3.3 40 232-274 24-63 (97)
8 d1oqya4 d.15.1.1 (A:1-77) Ubiq 24.3 27 0.0019 25.0 3.1 42 233-274 15-56 (77)
9 d1x1ma1 d.15.1.1 (A:8-101) Ubi 23.5 32 0.0023 26.8 3.6 56 240-301 37-92 (94)
10 d2zeqa1 d.15.1.1 (A:1-78) Ubiq 22.6 58 0.0042 23.4 4.8 61 235-304 17-77 (78)
No 1
>d2gu3a2 d.17.1.6 (A:34-98) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=39.89 E-value=7.6 Score=29.19 Aligned_cols=36 Identities=31% Similarity=0.585 Sum_probs=25.9
Q ss_pred eEEEEE-EEeCCC------CCcCCCCccceeeeecCCCCceEEEE
Q psy6128 261 LRMEKI-LYTGKE------GKTTQGCPLAKWVIRRASLEEKLLLI 298 (529)
Q Consensus 261 iRiEkV-vYTGKE------GKSSqGCPiAKWVIRRss~eEKlLcL 298 (529)
-.++.+ .|.|++ |++.+|=+|+=||- ....+|++++
T Consensus 19 ~~v~~f~~YnG~~tYyvv~G~n~~ge~i~VwVp--~~K~~kv~vk 61 (65)
T d2gu3a2 19 AHVDQVETFVGKEKYYVVKGTDKKGTALYVWVP--ADKKAKILSK 61 (65)
T ss_dssp EEEEEEEEEESSSEEEEEEEEETTCCEEEEEEE--SSTTSCCEEE
T ss_pred eeeeeEEEEcCceEEEEEEeecCCCCEEEEEEe--cCCCCcEEEE
Confidence 344444 577877 99999999999993 2445777764
No 2
>d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816 {Porphyromonas gingivalis [TaxId: 837]}
Probab=39.39 E-value=6.4 Score=34.03 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=17.1
Q ss_pred CchhHHHHHHHh----hhcCCCCCc
Q psy6128 326 QSDGVYAILTNK----LNKYGLPTT 346 (529)
Q Consensus 326 ~AD~lY~eLt~~----L~kyG~pT~ 346 (529)
.-|.||+|||.+ |.+||+||.
T Consensus 125 eyd~LYTELTGtI~l~iEe~gi~~~ 149 (149)
T d2apla1 125 EYEHLYTELTGTIVLLIESNHLPTI 149 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred ccchhhhhhhhhhhhhhhhcCCCCC
Confidence 348899999987 568899983
No 3
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]}
Probab=34.26 E-value=11 Score=29.12 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=33.3
Q ss_pred ceeEEEEEEEecCCCCCCchhHHHHHHHhhhcC-CCCCcc
Q psy6128 309 TAWIVVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPTTR 347 (529)
Q Consensus 309 tAviVv~Iv~WeGIp~~~AD~lY~eLt~~L~ky-G~pT~R 347 (529)
..+++|-|-++.|.+.+.-.+||+.|++.|.+. |.|-.+
T Consensus 57 ~~~~~I~i~~~~grs~eqK~~l~~~lt~~l~~~lgi~~~~ 96 (120)
T d1mwwa_ 57 DDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHD 96 (120)
T ss_dssp TTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 356778888999999999999999999999876 888544
No 4
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]}
Probab=32.12 E-value=5.9 Score=33.32 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.0
Q ss_pred ceeceeeccccccccccccCCCCcEEEE
Q psy6128 453 SGVTACFDFCAHSHRDLHNMNNGCTVVV 480 (529)
Q Consensus 453 SGVTaClDFCAHaHrD~HNM~NGsTVVc 480 (529)
++|.++ ||.|.|++.+...+|.++++
T Consensus 186 ~~v~~v--l~GH~H~~~~~~~~g~~~~~ 211 (271)
T d3d03a1 186 PSLTRI--FCGHNHSLTMTQYRQALIST 211 (271)
T ss_dssp TTEEEE--EECSSSSCEEEEETTEEEEE
T ss_pred CCeEEE--EeCCcchhhceEECCEEEEE
Confidence 477766 79999999999999987764
No 5
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=28.87 E-value=13 Score=25.89 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=28.5
Q ss_pred EEEEEEecCCCCCCchhHHHHHHHhhhcC-CCCC
Q psy6128 313 VVVIVAWEGVPLNQSDGVYAILTNKLNKY-GLPT 345 (529)
Q Consensus 313 Vv~Iv~WeGIp~~~AD~lY~eLt~~L~ky-G~pT 345 (529)
+|-|-+|+|-+.+.-.+||.+||+.|.+. |.|-
T Consensus 2 ~I~i~~~~Grs~eqK~~l~~~it~~~~~~~g~~~ 35 (59)
T d1otfa_ 2 IAQLYIIEGRTDEQKETLIRQVSEAMANSLDAPL 35 (59)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 46678899998888999999999999886 8774
No 6
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}
Probab=25.28 E-value=31 Score=25.31 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHhccccccceEEEEEE
Q psy6128 241 ASLPDLRKDIEERSGYKGKALRMEKIL 267 (529)
Q Consensus 241 psvaaiRe~mE~R~G~kG~AiRiEkVv 267 (529)
+..+|+||++|+ .|.+...+++....
T Consensus 44 ~~~aa~RE~~EE-tGl~~~~~~~~~~~ 69 (137)
T d1ktga_ 44 EWQAAIRETKEE-ANITKEQLTIHEDC 69 (137)
T ss_dssp HHHHHHHHHHHH-HCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHH-hCCcceeeeeeeee
Confidence 456789998887 89999888876543
No 7
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.11 E-value=26 Score=26.47 Aligned_cols=40 Identities=8% Similarity=0.029 Sum_probs=33.3
Q ss_pred cccccCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCC
Q psy6128 232 SYYTHLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGK 274 (529)
Q Consensus 232 pyYTHLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGK 274 (529)
++---+...-+|..|++++++.||...++.|+ +|.|++..
T Consensus 24 ~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL---~y~~~~~~ 63 (97)
T d1wjna_ 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLL---SYESSKMP 63 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEE---EEECTTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHCcChHHeEE---EecCCCCC
Confidence 34345788899999999999999999999987 68887543
No 8
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.28 E-value=27 Score=24.99 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=32.4
Q ss_pred ccccCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCC
Q psy6128 233 YYTHLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGK 274 (529)
Q Consensus 233 yYTHLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGK 274 (529)
|.-+...-.+|+.|++.++.+.|...-...--+++|.||+=+
T Consensus 15 ~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~ 56 (77)
T d1oqya4 15 FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS 56 (77)
T ss_dssp EEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCcc
Confidence 444667778999999999999997665554457889999744
No 9
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.55 E-value=32 Score=26.78 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=40.0
Q ss_pred CCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEee
Q psy6128 240 AASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKH 301 (529)
Q Consensus 240 gpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~ 301 (529)
+.+|+.|++++.+++.+..-+-.--+.+|.||+=+ .+-.++.+=|...+ .|-||++
T Consensus 37 ~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~--D~~tL~~y~I~~gs----tihLV~r 92 (94)
T d1x1ma1 37 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK--DDQTLDFYGIQPGS----TVHVLRK 92 (94)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC--TTCBHHHHTCCTTC----EEEEEES
T ss_pred ccCHHHHHHHHHHHcccCCCChhheEEEECCeEEC--CCccHHHcCCCCCC----EEEEEEe
Confidence 78999999999999998764434456799999865 34466666555443 6666654
No 10
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.58 E-value=58 Score=23.38 Aligned_cols=61 Identities=20% Similarity=0.388 Sum_probs=42.3
Q ss_pred ccCCCCCChHHHHHHHHHhccccccceEEEEEEEeCCCCCcCCCCccceeeeecCCCCceEEEEEeecCC
Q psy6128 235 THLGAAASLPDLRKDIEERSGYKGKALRMEKILYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304 (529)
Q Consensus 235 THLGagpsvaaiRe~mE~R~G~kG~AiRiEkVvYTGKEGKSSqGCPiAKWVIRRss~eEKlLcLVr~R~G 304 (529)
-+.....+|+.|.+.++++.|..=...| ++|-||+=. .+-.++.+=|...| .|-||.+..|
T Consensus 17 l~v~~~~tV~~lK~~i~~~~gip~~~qr---Li~~Gk~L~--d~~tL~~y~I~~~s----ti~lv~R~rg 77 (78)
T d2zeqa1 17 VEVDSDTSILQLKEVVAKRQGVPADQLR---VIFAGKELP--NHLTVQNCDLEQQS----IVHIVQRPRR 77 (78)
T ss_dssp EEECTTCBHHHHHHHHHHHHTCCGGGEE---EEETTEEEC--TTCBGGGSSCCTTC----EEEEEESSCC
T ss_pred EEEcccccHHHHHHHHHHHHCcChhHeE---EEEeeeEcC--CCCCHHHcCCCCCC----EEEEEeccCC
Confidence 4567888999999999999999877765 789999743 24456666554333 4444444433
Done!