RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6128
         (529 letters)



>gnl|CDD|221808 pfam12851, Tet_JBP, Oxygenase domain of the 2OGFeDO superfamily.  A
           double-stranded beta helix (DSBH) fold domain of the
           2-oxoglutarate (2OG)-Fe(II)-dependent dioxygenase
           (2OGFeDO) superfamily found in various eukaryotes,
           bacteria and bacteriophages. Members of this family
           catalyze nucleic acid modifications, such as thymidine
           hydroxylation during base J synthesis in kinetoplastids,
           and the conversion of 5 methyl-cytosine (5-mC) to
           5-hydroxymethyl-cytosine (hmC), or further oxidation to
           5-formylcytosine (5fC) and 5-carboxylcytosine (5caC).
           Metazoan TET proteins contain a cysteine-rich region
           inserted into the core of the DSBH fold. Vertebrate TET
           proteins are oncogenes that are mutated in various
           myeloid cancers. Fungal and algal versions of this
           family are linked to a predicted transposase and show
           lineage-specific expansions.
          Length = 162

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 9/127 (7%)

Query: 376 SWSMYYNGCKYARSKTVRKFRLSVRSEEQEIEEKMHLLATTISPLYKALAPGAFTNQCQF 435
             + Y++G K    +  RK RL+  +E  ++EE +  LA T+S + K + P  +      
Sbjct: 1   GIAGYFDGRKRPGREKCRKTRLT--AESPKLEELLEELADTVSAILKVINPDLYNKLDSL 58

Query: 436 EREASECRLGFKPGRPFSGVTACFDFCAHSHRDLHNMNNGCTVVVSLTKHRSLSKPDDEQ 495
             +   C        PFS V+   +     HRD  +  NG  ++V+L          +  
Sbjct: 59  LEDIGNC-KLLTEATPFSTVSVNKNRITALHRDKGDF-NGIGLLVTLY-----FGDFEGG 111

Query: 496 LHVLPLY 502
              LP  
Sbjct: 112 YLELPDL 118


>gnl|CDD|173158 PRK14695, PRK14695, serine/threonine transporter SstT; Provisional.
          Length = 319

 Score = 30.8 bits (69), Expect = 1.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 331 YAILTNKLNKYGLPT--TRRCATNEP---RTCACQGLDPDTCGASFSFGCSWSM 379
           Y ++ N L   G+    TR  ATN P   + C   GL+PDT   S   G + +M
Sbjct: 159 YPLVWNCLRVSGVTAFFTRSSATNIPVNMKLCHDLGLNPDTYSVSIPLGSTINM 212


>gnl|CDD|236544 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase;
           Reviewed.
          Length = 830

 Score = 30.5 bits (69), Expect = 2.6
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 13/61 (21%)

Query: 140 VDSAGPWCCRGGG-------TEPPTSEHLKDGLCQGMRTQDEMLEPKEPNNNEEPATVKA 192
           VD  G + C  GG       T+ P        LCQ    Q +  +P++    +      +
Sbjct: 764 VDYDGNFVCGSGGMRVLPVWTDDP------QSLCQQSEMQQQPSQPQQQPQQQPAEQKDS 817

Query: 193 E 193
           +
Sbjct: 818 D 818


>gnl|CDD|218665 pfam05630, NPP1, Necrosis inducing protein (NPP1).  This family
           consists of several NPP1 like necrosis inducing proteins
           from oomycetes, fungi and bacteria. Infiltration of NPP1
           into leaves of Arabidopsis thaliana plants result in
           transcript accumulation of pathogenesis-related (PR)
           genes, production of ROS and ethylene, callose
           apposition, and HR-like cell death.
          Length = 195

 Score = 29.6 bits (67), Expect = 3.3
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 3/34 (8%)

Query: 359 CQGLDPDTCGASFSFGCSWSMYYNGCKYARSKTV 392
             GL P     S S GC  S   N   YARS   
Sbjct: 32  SGGLKP---TGSPSGGCRDSSDLNSQTYARSACY 62


>gnl|CDD|183858 PRK13059, PRK13059, putative lipid kinase; Reviewed.
          Length = 295

 Score = 28.8 bits (65), Expect = 7.1
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 7/38 (18%)

Query: 393 RKFRLSVRSEEQEIEEKMHLL-------ATTISPLYKA 423
           RK ++ V SEE   +  M+L+       A   +  YKA
Sbjct: 172 RKLKVKVTSEEVNFDGDMYLMLVFNGQTAGNFNLAYKA 209


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,984,762
Number of extensions: 2560857
Number of successful extensions: 1723
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1721
Number of HSP's successfully gapped: 8
Length of query: 529
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 428
Effective length of database: 6,457,848
Effective search space: 2763958944
Effective search space used: 2763958944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)