RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6128
(529 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 7e-06
Identities = 72/459 (15%), Positives = 113/459 (24%), Gaps = 199/459 (43%)
Query: 156 PTSEH-----LKDGLCQGMRTQDEML----EPKEP-----------NNNEEPATVKAEDP 195
PT+ L++ + + E EP P ++ EP+ V D
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 196 NSKEMLDHIER--LKNNMRTEVPDCKCFASDKLPPEPG----------SYYTHLGAAASL 243
L E L+ N D A+ L +Y A +
Sbjct: 83 VLNLCLTEFENCYLEGN------DIHALAAKLLQENDTTLVKTKELIKNYI----TARIM 132
Query: 244 PDLRKDIEERSGYKGKALRMEKILYT--GKEGKTTQGC----------------PLAKWV 285
D + S L G G QG L +
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFG--G---QGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 286 IRRASLEEKLLLIVKHRQ------GHTCSTAWIVVVIVAWEGVPLNQSDGVY-------- 331
I+ ++ E L +++ + I+ W P N D Y
Sbjct: 188 IKFSA--ETLSELIRTTLDAEKVFTQGLN-------ILEWLENPSNTPDKDYLLSIPISC 238
Query: 332 -AI-LTNKLNKYGLPTTRRCATNEPRTCACQGLDPD-----TCGASFSFGC--------- 375
I + +L Y + T G P GA+ G
Sbjct: 239 PLIGVI-QLAHYVV------------TAKLLGFTPGELRSYLKGAT---GHSQGLVTAVA 282
Query: 376 -----SW-SMYYNGCKY--------ARS-----------KTVRKFR----------LSVR 400
SW S + + K R + LS+
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 401 SEEQE-IEEKM-----HL-------LATTISP-----------LY-------KALAPGAF 429
+ QE +++ + HL ++ LY KA AP
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG- 401
Query: 430 TNQCQ--FEREASECRLGFKPGRPFSGVTACFDFCAHSH 466
+Q + F + F P V + F HSH
Sbjct: 402 LDQSRIPFSERKLKFSNRFLP------VASPF----HSH 430
Score = 34.6 bits (79), Expect = 0.10
Identities = 48/290 (16%), Positives = 85/290 (29%), Gaps = 116/290 (40%)
Query: 93 RPQHLVPLLHRQKDLKVPFGVDPRMEEHSDSGKKSYVFAGEGGPCSLVDSAGPWCCRGGG 152
R P + P + E S EG P ++
Sbjct: 309 RCYEAYP----------NTSLPPSILEDSLEN-------NEGVPSPML------SISNLT 345
Query: 153 TEP------------PTSEHLKDGLCQGMRTQDEMLEPKEPNNNEEPATVKAEDPNSKEM 200
E P + ++ L G N V + P S
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNG------------AKNL-----VVSGPPQSLYG 388
Query: 201 LD-HIERLKNNM---RTEVPDCKCFASDK-------LP---PEPGSYYTHLGAAASLPDL 246
L+ + + K ++ +P F+ K LP P +++HL AS +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIP----FSERKLKFSNRFLPVASP----FHSHLLVPAS-DLI 439
Query: 247 RKDIEERS-GYKGKALRMEKI-LYTGKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQG 304
KD+ + + + K + +I +Y +G + S+ E++
Sbjct: 440 NKDLVKNNVSFNAKDI---QIPVYDTFDGSDLRVL--------SGSISERI--------- 479
Query: 305 HTCSTAWIVVVIVAWEGV------------PLNQSDGVYAILTNKLNKYG 342
I+ + V WE P S G+ +LT++ NK G
Sbjct: 480 ----VDCIIRLPVKWETTTQFKATHILDFGPGGAS-GL-GVLTHR-NKDG 522
Score = 31.9 bits (72), Expect = 0.60
Identities = 41/250 (16%), Positives = 73/250 (29%), Gaps = 85/250 (34%)
Query: 52 FPN----PSMYWANKLN-----SPM-------EPHLPTDI-HMKHHPQPRSKI---IVED 91
+PN PS+ + N SPM + + + H ++ +V
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 92 RR-------PQHLVPLLHRQKDLKVPFGVDPRMEEHSDSGKK---SYVFAGEGGPCSLVD 141
+ PQ L L + K P G+D S+ +K S F L
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE--RKLKFSNRF--------LPV 423
Query: 142 SAGPWCCRGGGTEPPTSEHLK---DGLCQGMRTQDEMLEPKEPNNNEEP--ATVKAEDPN 196
++ P S L D + + + + K+ P T D
Sbjct: 424 AS-----------PFHSHLLVPASDLINKDLVKNNVSFNAKDIQ---IPVYDTFDGSD-- 467
Query: 197 SKEMLDHIERLKNNMRTEVPDCKCF------ASDKLPPEPGSYYTHL-----GAAASLPD 245
+ L ++ + DC + + TH+ G A+ L
Sbjct: 468 -------LRVLSGSISERIVDCIIRLPVKWETTTQFKA------THILDFGPGGASGLGV 514
Query: 246 LRKDIEERSG 255
L ++ +G
Sbjct: 515 LTHRNKDGTG 524
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.006
Identities = 69/562 (12%), Positives = 128/562 (22%), Gaps = 235/562 (41%)
Query: 2 SLYYDSKKSYLGHDRLFPQSRKDPPSWTDKNLEPKPRYNEPLWASR----EFSPFPNPSM 57
S+ DRL+ D + N+ R +P R E P N +
Sbjct: 106 SMMTRMYIEQ--RDRLY----NDNQVFAKYNV---SR-LQPYLKLRQALLELRPAKNVLI 155
Query: 58 Y--------W--ANKLNS-PMEPHLPTDIH---MKHHPQPRSKIIVEDRRPQHLVPLLHR 103
W + S ++ + I +K+ P + + + + + P
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 104 QKDLKVPFGVDPRMEEHSDSGKKSYVFAGEGGPCSLV---DSAGPWC-------CR---- 149
+ D + ++ HS + + + L+ + C+
Sbjct: 216 RSD----HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 150 -----------GGGTEPPTSEHLKDGL-----------CQGMRTQD-------------- 173
T + +H L R QD
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 174 --------------------------------EMLEPKE-----------PNNNEEPATV 190
+LEP E P + P +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 191 --------KAEDPNSKEMLDH------IERLKNNMRTEVPDC------------------ 218
D +++ +E+ +P
Sbjct: 392 LSLIWFDVIKSDV--MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 219 -------KCFASDKLPPEP--GSYYTHLGAAASLPDLRKDIEERSGYKGKALRMEKILYT 269
K F SD L P +Y+H+ G+ K + +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHI-----------------GHHLKNIEHPE---- 488
Query: 270 GKEGKTTQGCPLAKWVIRRASLEEKLLLIVKHRQGHTCSTAWIVVVIVAWEGVPLNQSDG 329
R +L + L ++ I + N S
Sbjct: 489 ------------------RMTLFRMVFL----------DFRFLEQKIRH-DSTAWNASGS 519
Query: 330 VYAILTNKLNKYGLPTTRRCATNEPRTCACQGLDPDTCGASFSFGCSWSMYYNGCKYARS 389
+ L L Y E A LD F ++ S
Sbjct: 520 ILNTLQQ-LKFYKPYICDNDPKYERLVNAI--LD-------FLPKIEENLI-------CS 562
Query: 390 KTVRKFRLSVRSEEQEIEEKMH 411
K R+++ +E++ I E+ H
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAH 584
Score = 37.9 bits (87), Expect = 0.009
Identities = 60/392 (15%), Positives = 107/392 (27%), Gaps = 130/392 (33%)
Query: 197 SKEMLDHIERLKNNM-RTEVPDCKCFASDKLPPEPGSYYTHLGAAASLPDLRKD---IEE 252
SKE +DHI K+ + T + F + E + LR + +
Sbjct: 47 SKEEIDHIIMSKDAVSGTL----RLFWTLLSKQEEM-VQKFVEEV-----LRINYKFLMS 96
Query: 253 RSGYKGKALRMEKILYTGKEGKT-TQGCPLAKWVIRRASLEEKL---LLIVKHRQGHT-- 306
+ + M +Y + + AK+ + R KL LL ++ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 307 ----CSTAWIVVVIVAWEGVPLNQSDGVYAILTNKLNKYGLPTTRRCATNEPRTCA---- 358
W+ + + V ++ + + C N P T
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-----------NLKNC--NSPETVLEMLQ 203
Query: 359 --CQGLDPDTCGASFSFGCSWSMYYNGCKYARSKTVRKFRLSVRSEEQE----IEEKMH- 411
+DP+ +RS +L + S + E ++ K +
Sbjct: 204 KLLYQIDPNWT-------------------SRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 412 --LL-------ATTISPLYKALAPGAFTNQCQF---EREASECRLGFKPGRPFSGVTACF 459
LL A + AF C+ R VT
Sbjct: 245 NCLLVLLNVQNAKAWN---------AFNLSCKILLTTRFKQ--------------VTDFL 281
Query: 460 DFCAHSHRDLHNMNNGCTVVVSLTKHRSLS--------KPDD---EQLHVLPLYI-M--- 504
+H L + + LT S +P D E L P + +
Sbjct: 282 SAATTTHISLDHHSMT------LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 505 ---DDSDEFGN-KEAQEEKVNT---GAIENLN 529
D + N K +K+ T ++ L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.59
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 402 EEQEI---EEKMHLLATTISPLYKALAPGA 428
E+Q + + + L A +P ALA A
Sbjct: 18 EKQALKKLQASLKLYADDSAP---ALAIKA 44
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT
choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 650
Score = 28.4 bits (62), Expect = 7.1
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 47 REFSPFPNPSMYWANKLNSPMEPHLPTDIHMKHHPQPRSKIIVEDRRPQHLVPLLH 102
R S + A +L ++ + + + +S+ ++ DR PL+H
Sbjct: 183 RYSSTSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLKSPLVH 238
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 28.3 bits (64), Expect = 7.9
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 13/54 (24%)
Query: 449 GRPFSGVTACFDFCAHSHRDLHNMNNGCTVVVSLTKHRSLSKPDDEQLHVLPLY 502
G P R + + + + L ++PLY
Sbjct: 166 GLP-KAAI-------IPQRAA--ESRVLFMSTQVGLRHG---RHNVVLGLMPLY 206
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.420
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,263,024
Number of extensions: 491214
Number of successful extensions: 913
Number of sequences better than 10.0: 1
Number of HSP's gapped: 908
Number of HSP's successfully gapped: 15
Length of query: 529
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 431
Effective length of database: 3,965,535
Effective search space: 1709145585
Effective search space used: 1709145585
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)