RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6128
         (529 letters)



>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal
           domains {Human (Homo sapiens), tissue isozyme [TaxId:
           9606]}
          Length = 114

 Score = 27.0 bits (60), Expect = 2.4
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 375 CSWSMYYNGCKYARSKTVRKFRLSVRSEEQEIEE 408
           C+ ++ YNG       T     L++    ++   
Sbjct: 39  CARTVSYNGILGPECGTKYLLNLTLEPFSEKSVP 72


>d2c5wb1 e.3.1.1 (B:266-650) Penicillin-binding protein 1a,
           transpeptidase domain {Streptococcus pneumoniae [TaxId:
           1313]}
          Length = 385

 Score = 28.2 bits (61), Expect = 2.5
 Identities = 10/138 (7%), Positives = 33/138 (23%), Gaps = 3/138 (2%)

Query: 27  SWTDKNLEPKPRYNEPLWASREF-SPFPNPSMYWANKLNSPMEPHLPTDIHMKHHPQPRS 85
               ++       N+ +  +R++ S     + Y         E          ++    +
Sbjct: 81  GARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYESTATIVHDEPYNYPGTN 140

Query: 86  KIIVEDRRPQHLVPLLHRQKDLKVPFGVDPRMEEHSDSGKKSYV--FAGEGGPCSLVDSA 143
             +    R       L               + +   +  K+++     +       ++ 
Sbjct: 141 TPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAI 200

Query: 144 GPWCCRGGGTEPPTSEHL 161
                        +SE +
Sbjct: 201 SSNTTESDKKYGASSEKM 218


>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 90

 Score = 25.9 bits (57), Expect = 4.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 286 IRRASLEEKLLLIVKHRQGHTCSTAWIV 313
           +RRA  +E+L  I  +  G   S+ W +
Sbjct: 57  VRRAVNDERLTTIAHNMSGPNSSSEWSI 84


>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6
           [TaxId: 1422]}
          Length = 371

 Score = 26.3 bits (57), Expect = 8.8
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 4   YYDSKKSYLGHDRLFPQSRKDPPSWTDKNLEPKPRYN 40
                     + ++     KD P     + + KP Y 
Sbjct: 329 GNVVVDPNAPYAKVEKGKGKDAPFVFGPDYKVKPAYW 365


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,067,843
Number of extensions: 99737
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 4
Length of query: 529
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 439
Effective length of database: 1,171,896
Effective search space: 514462344
Effective search space used: 514462344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)