BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6129
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 301 bits (771), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 220/388 (56%), Gaps = 25/388 (6%)
Query: 18 ECRMNIKSVNDFEWLKQCRFYF----KDDLDKTWINITDVTFTYQNEYLGCTERLVITPL 73
+C+ N+ DF+WL R+Y+ ++ L K I++ + TF Y EYLG ERLV TPL
Sbjct: 531 KCK-NLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTPL 589
Query: 74 TDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRI 133
TDRCY+TL QAL MGG+P GPAGTGKTETVK +G L ++V+VF C + D + + RI
Sbjct: 590 TDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRI 649
Query: 134 YKGLAQSGSWGCFDEFNRIELPXXXXXXXXXXXXXXXXXXXXXXFVFTDGDSIEMCPEFG 193
+ GL Q G+WGCFDEFNR+E G +I + + G
Sbjct: 650 FVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMG 709
Query: 194 IFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLY 253
IF+TMNPGYAGR LP+NLK FR++AM+ PDR++I +V L S GF LA K L+
Sbjct: 710 IFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLF 769
Query: 254 KLCEEQLTKQVHYDFGLRNILSVLRSLGAAKRVNS-------RDTEST------------ 294
KLC+EQL+ Q HYDFGLR + SVL S G KR D ES
Sbjct: 770 KLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEI 829
Query: 295 -IVMRVLRDMNLSKLIDEDEPLFISLVADLFPNQALEKTAYPALEGAIQEQCEAAGLIFH 353
+++ + D + KL+ +D PL SL+ D+FP L+ L IQE + L+
Sbjct: 830 GVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTK 889
Query: 354 PPWVLKLIQLYETQRVRHGIMTLGPTGA 381
WV K++QL++ + HG+M +GP+G
Sbjct: 890 QEWVEKILQLHQILNINHGVMMVGPSGG 917
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 301 bits (771), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 220/388 (56%), Gaps = 25/388 (6%)
Query: 18 ECRMNIKSVNDFEWLKQCRFYF----KDDLDKTWINITDVTFTYQNEYLGCTERLVITPL 73
+C+ N+ DF+WL R+Y+ ++ L K I++ + TF Y EYLG ERLV TPL
Sbjct: 531 KCK-NLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTPL 589
Query: 74 TDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRI 133
TDRCY+TL QAL MGG+P GPAGTGKTETVK +G L ++V+VF C + D + + RI
Sbjct: 590 TDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRI 649
Query: 134 YKGLAQSGSWGCFDEFNRIELPXXXXXXXXXXXXXXXXXXXXXXFVFTDGDSIEMCPEFG 193
+ GL Q G+WGCFDEFNR+E G +I + + G
Sbjct: 650 FVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMG 709
Query: 194 IFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLY 253
IF+TMNPGYAGR LP+NLK FR++AM+ PDR++I +V L S GF LA K L+
Sbjct: 710 IFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLF 769
Query: 254 KLCEEQLTKQVHYDFGLRNILSVLRSLGAAKRVNS-------RDTEST------------ 294
KLC+EQL+ Q HYDFGLR + SVL S G KR D ES
Sbjct: 770 KLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEI 829
Query: 295 -IVMRVLRDMNLSKLIDEDEPLFISLVADLFPNQALEKTAYPALEGAIQEQCEAAGLIFH 353
+++ + D + KL+ +D PL SL+ D+FP L+ L IQE + L+
Sbjct: 830 GVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTK 889
Query: 354 PPWVLKLIQLYETQRVRHGIMTLGPTGA 381
WV K++QL++ + HG+M +GP+G
Sbjct: 890 QEWVEKILQLHQILNINHGVMMVGPSGG 917
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/354 (32%), Positives = 176/354 (49%), Gaps = 8/354 (2%)
Query: 31 WLKQCRFYFK----DDLDKTWINITDVTFTYQNEYLGCTERLVITPLTDRCYITLAQALT 86
W K +FY K DDL+ +I+ + Y+ EY+G ERL+ TPL + TL +L
Sbjct: 365 WAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATLTDSLH 424
Query: 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCF 146
GG GPAGTGKTETVK G+ L + VVVFNC D DY+ L R+ G+ Q G+WGCF
Sbjct: 425 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCF 484
Query: 147 DEFNRIELPXXXXXXXXXXXXXXXXXXXXXXFVFTDGDSIEMCPEFGIFITMNPGYAGRK 206
DEFNR++ + ++ + P +FIT+NPGY GR
Sbjct: 485 DEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEET-PLSPHTAVFITLNPGYNGRS 543
Query: 207 ELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLTKQVHY 266
ELPENLK FR +M P I + L GF ++ +LA K +L + + HY
Sbjct: 544 ELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHY 603
Query: 267 DFGLRNILSVLRSLGAAKRVNSRDTESTIVMRVLRDMNLSKLIDEDEPLFISLVADLFPN 326
FGLR + VLR+ + ++ V+ L+ + L L D DE +F ++ +F +
Sbjct: 604 HFGLRTLKGVLRN--CSPLISEFGEGEKTVVESLKRVILPSLGDTDELVFKDELSKIFDS 661
Query: 327 QALEKTAYPALEGAIQEQCEAAGLIFHPPWVLKLIQLYETQRVRHGIMTLGPTG 380
+ A+ +++ + +G ++ K +Q Y Q+ + ++ +G G
Sbjct: 662 AGTPLNS-KAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAG 714
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/354 (32%), Positives = 176/354 (49%), Gaps = 8/354 (2%)
Query: 31 WLKQCRFYFK----DDLDKTWINITDVTFTYQNEYLGCTERLVITPLTDRCYITLAQALT 86
W K +FY K DDL+ +I+ + Y+ EY+G ERL+ TPL + TL +L
Sbjct: 584 WAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATLTDSLH 643
Query: 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCF 146
GG GPAGTGKTETVK G+ L + VVVFNC D DY+ L R+ G+ Q G+WGCF
Sbjct: 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCF 703
Query: 147 DEFNRIELPXXXXXXXXXXXXXXXXXXXXXXFVFTDGDSIEMCPEFGIFITMNPGYAGRK 206
DEFNR++ + ++ + P +FIT+NPGY GR
Sbjct: 704 DEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEET-PLSPHTAVFITLNPGYNGRS 762
Query: 207 ELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLTKQVHY 266
ELPENLK FR +M P I + L GF ++ +LA K +L + + HY
Sbjct: 763 ELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHY 822
Query: 267 DFGLRNILSVLRSLGAAKRVNSRDTESTIVMRVLRDMNLSKLIDEDEPLFISLVADLFPN 326
FGLR + VLR+ + ++ V+ L+ + L L D DE +F ++ +F +
Sbjct: 823 HFGLRTLKGVLRN--CSPLISEFGEGEKTVVESLKRVILPSLGDTDELVFKDELSKIFDS 880
Query: 327 QALEKTAYPALEGAIQEQCEAAGLIFHPPWVLKLIQLYETQRVRHGIMTLGPTG 380
+ A+ +++ + +G ++ K +Q Y Q+ + ++ +G G
Sbjct: 881 AGTPLNS-KAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAG 933
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 83 QALTMSMGGSP---CGPAGTGKTETVKDMGKTLAKYVVVFNCS---DQMDYRGL------ 130
Q LT S+ G GP G GKT K + K+L + V + D+ + RG
Sbjct: 100 QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVG 159
Query: 131 ---GRIYKGLAQSGSWG---CFDEFNRI 152
GRI +G+ ++G DE +++
Sbjct: 160 AMPGRIIQGMKKAGKLNPVFLLDEIDKM 187
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 17/84 (20%)
Query: 75 DRCYITLAQALTMSMGG-----SP------CGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123
D+ L +A+ M+ G P GP G GKTE + K L ++ F+ S+
Sbjct: 464 DKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSE 523
Query: 124 QMDYRGLGRI------YKGLAQSG 141
M+ + R+ Y G Q G
Sbjct: 524 YMERHTVSRLIGAPPGYVGFDQGG 547
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,442,234
Number of Sequences: 62578
Number of extensions: 382499
Number of successful extensions: 1176
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 14
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)