Query psy6129
Match_columns 383
No_of_seqs 201 out of 1897
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 18:21:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12774 AAA_6: Hydrolytic ATP 100.0 5.2E-68 1.1E-72 476.6 19.9 231 57-288 1-231 (231)
2 TIGR01650 PD_CobS cobaltochela 99.9 9.8E-25 2.1E-29 203.2 20.3 240 67-326 46-317 (327)
3 TIGR02640 gas_vesic_GvpN gas v 99.9 2.2E-24 4.8E-29 199.3 22.0 202 68-283 1-239 (262)
4 COG5271 MDN1 AAA ATPase contai 99.9 8.1E-25 1.8E-29 227.1 20.7 298 64-383 863-1186(4600)
5 COG5271 MDN1 AAA ATPase contai 99.9 4.8E-24 1E-28 221.4 23.1 320 48-383 1503-1863(4600)
6 PF12775 AAA_7: P-loop contain 99.9 7.4E-25 1.6E-29 202.5 15.4 231 66-302 11-271 (272)
7 PHA02244 ATPase-like protein 99.8 1.1E-17 2.3E-22 157.8 19.7 186 71-279 102-306 (383)
8 KOG3595|consensus 99.8 2.9E-17 6.3E-22 181.5 21.3 313 66-383 105-478 (1395)
9 PF07728 AAA_5: AAA domain (dy 99.7 1.1E-17 2.3E-22 139.9 7.4 118 91-216 2-139 (139)
10 PF07726 AAA_3: ATPase family 99.7 1.8E-17 3.9E-22 133.0 7.4 116 91-217 2-130 (131)
11 COG0714 MoxR-like ATPases [Gen 99.7 1.4E-16 3.1E-21 152.2 13.9 176 74-259 29-227 (329)
12 KOG1808|consensus 99.7 4.4E-16 9.5E-21 169.5 16.8 200 49-257 400-617 (1856)
13 COG5245 DYN1 Dynein, heavy cha 99.7 4.8E-16 1E-20 162.3 12.8 313 67-383 1473-1849(3164)
14 KOG0733|consensus 99.5 6.1E-12 1.3E-16 123.2 22.3 276 87-383 222-558 (802)
15 KOG0736|consensus 99.4 1.4E-11 3E-16 123.6 18.2 135 92-238 435-580 (953)
16 COG5245 DYN1 Dynein, heavy cha 99.4 6.2E-13 1.3E-17 139.6 6.4 287 45-383 904-1195(3164)
17 PRK11331 5-methylcytosine-spec 99.4 1.7E-11 3.6E-16 119.1 15.6 180 76-258 182-394 (459)
18 KOG0730|consensus 99.3 9.5E-11 2.1E-15 116.2 18.3 235 88-383 218-481 (693)
19 TIGR01243 CDC48 AAA family ATP 99.2 5.2E-10 1.1E-14 118.0 17.7 127 88-233 212-355 (733)
20 TIGR02639 ClpA ATP-dependent C 99.2 3.7E-10 7.9E-15 118.9 15.2 132 88-234 203-355 (731)
21 PRK11034 clpA ATP-dependent Cl 99.2 6.9E-10 1.5E-14 115.9 15.6 132 88-234 207-359 (758)
22 PF05496 RuvB_N: Holliday junc 99.1 3.1E-10 6.8E-15 100.1 10.1 137 91-239 53-194 (233)
23 KOG1808|consensus 99.1 3.5E-10 7.6E-15 124.2 10.9 302 68-383 45-453 (1856)
24 PRK00080 ruvB Holliday junctio 99.1 7.6E-09 1.6E-13 99.0 18.4 134 90-235 53-191 (328)
25 COG0466 Lon ATP-dependent Lon 99.0 2.1E-09 4.5E-14 107.9 12.2 128 86-222 346-493 (782)
26 PF00004 AAA: ATPase family as 99.0 1.4E-09 3E-14 89.3 8.5 111 92-217 2-125 (132)
27 PF07724 AAA_2: AAA domain (Cd 99.0 8.4E-10 1.8E-14 95.2 7.1 100 92-201 7-130 (171)
28 COG0542 clpA ATP-binding subun 99.0 2.9E-09 6.2E-14 109.5 12.1 99 93-201 526-644 (786)
29 smart00350 MCM minichromosome 99.0 7.7E-09 1.7E-13 104.5 15.0 133 90-231 238-394 (509)
30 TIGR00763 lon ATP-dependent pr 99.0 2.8E-09 6E-14 112.9 12.1 135 91-232 350-500 (775)
31 PRK13531 regulatory ATPase Rav 99.0 4.1E-09 9E-14 103.4 11.6 146 77-234 28-191 (498)
32 CHL00095 clpC Clp protease ATP 99.0 9.7E-09 2.1E-13 109.5 15.1 131 88-233 200-350 (821)
33 COG1239 ChlI Mg-chelatase subu 98.9 2.1E-08 4.5E-13 95.7 14.9 159 83-252 32-248 (423)
34 CHL00195 ycf46 Ycf46; Provisio 98.9 4.1E-09 8.9E-14 105.0 9.5 128 87-232 258-400 (489)
35 PRK11034 clpA ATP-dependent Cl 98.9 6.3E-09 1.4E-13 108.8 11.3 100 92-201 492-608 (758)
36 PTZ00454 26S protease regulato 98.9 2.3E-08 5E-13 97.5 14.0 166 88-282 179-364 (398)
37 TIGR02639 ClpA ATP-dependent C 98.9 1.3E-08 2.9E-13 107.2 12.8 100 92-201 488-604 (731)
38 cd00009 AAA The AAA+ (ATPases 98.9 1.1E-08 2.4E-13 84.8 9.6 129 75-220 4-148 (151)
39 TIGR00635 ruvB Holliday juncti 98.9 1.2E-08 2.7E-13 96.5 10.8 133 91-235 33-170 (305)
40 TIGR02974 phageshock_pspF psp 98.9 9.4E-08 2E-12 91.2 16.6 146 71-227 5-173 (329)
41 PRK13407 bchI magnesium chelat 98.9 2.5E-08 5.5E-13 94.7 12.2 147 78-235 17-214 (334)
42 PF01078 Mg_chelatase: Magnesi 98.8 1.4E-08 3.1E-13 88.9 9.4 118 75-200 9-158 (206)
43 TIGR03345 VI_ClpV1 type VI sec 98.8 1.6E-07 3.6E-12 100.0 18.9 131 88-233 208-359 (852)
44 PRK11608 pspF phage shock prot 98.8 7.2E-08 1.6E-12 92.0 14.6 146 71-227 12-180 (326)
45 KOG0735|consensus 98.8 7.6E-08 1.6E-12 96.5 14.6 131 89-233 432-582 (952)
46 KOG0738|consensus 98.8 1.8E-08 4E-13 94.5 9.1 141 87-239 244-400 (491)
47 TIGR01241 FtsH_fam ATP-depende 98.8 2.2E-08 4.7E-13 101.1 10.6 128 89-232 89-233 (495)
48 PRK15424 propionate catabolism 98.8 5.2E-08 1.1E-12 98.2 13.1 195 71-281 225-462 (538)
49 PRK03992 proteasome-activating 98.8 2E-08 4.4E-13 98.1 9.5 126 88-233 165-311 (389)
50 PRK10787 DNA-binding ATP-depen 98.8 2.6E-08 5.7E-13 104.9 10.8 134 91-233 352-502 (784)
51 KOG0730|consensus 98.8 1.3E-08 2.8E-13 101.4 7.5 143 85-242 465-623 (693)
52 PF00158 Sigma54_activat: Sigm 98.8 5.2E-08 1.1E-12 83.8 10.2 118 72-200 6-143 (168)
53 KOG2004|consensus 98.8 1.3E-08 2.9E-13 101.9 7.3 154 73-234 419-596 (906)
54 TIGR03346 chaperone_ClpB ATP-d 98.8 3.8E-07 8.2E-12 97.7 19.0 131 88-233 194-345 (852)
55 TIGR02902 spore_lonB ATP-depen 98.8 1.3E-07 2.8E-12 95.9 14.3 171 88-282 86-310 (531)
56 PLN03025 replication factor C 98.8 3E-07 6.5E-12 87.6 16.0 130 92-246 38-183 (319)
57 TIGR02030 BchI-ChlI magnesium 98.7 1.2E-07 2.6E-12 90.4 12.6 85 140-235 131-217 (337)
58 PRK14956 DNA polymerase III su 98.7 2.2E-07 4.8E-12 91.6 14.8 138 78-240 27-199 (484)
59 PRK04195 replication factor C 98.7 1.9E-07 4.1E-12 94.0 14.7 133 89-244 40-183 (482)
60 COG2255 RuvB Holliday junction 98.7 3.2E-07 6.9E-12 83.1 13.7 133 91-235 55-192 (332)
61 PRK14962 DNA polymerase III su 98.7 3E-07 6.6E-12 91.6 15.0 137 79-241 24-196 (472)
62 TIGR01817 nifA Nif-specific re 98.7 2E-07 4.3E-12 95.1 14.0 144 71-225 202-368 (534)
63 TIGR03689 pup_AAA proteasome A 98.7 5.4E-08 1.2E-12 97.1 9.3 130 88-233 216-374 (512)
64 CHL00206 ycf2 Ycf2; Provisiona 98.7 7.2E-08 1.6E-12 106.1 10.7 142 85-241 1627-1824(2281)
65 TIGR02881 spore_V_K stage V sp 98.7 2.2E-07 4.8E-12 86.0 12.5 169 92-280 46-234 (261)
66 TIGR00382 clpX endopeptidase C 98.7 3.1E-07 6.7E-12 89.5 13.9 64 91-154 119-195 (413)
67 TIGR00368 Mg chelatase-related 98.7 4.2E-07 9.1E-12 91.1 14.9 171 78-261 201-424 (499)
68 COG2256 MGS1 ATPase related to 98.7 3.4E-06 7.3E-11 80.1 19.8 124 83-234 41-173 (436)
69 TIGR02880 cbbX_cfxQ probable R 98.7 1.5E-07 3.2E-12 88.1 10.7 170 90-280 60-249 (284)
70 KOG0737|consensus 98.7 7.9E-07 1.7E-11 83.4 15.2 151 68-236 107-276 (386)
71 PHA02544 44 clamp loader, smal 98.7 1.9E-07 4E-12 88.9 11.5 113 93-231 48-167 (316)
72 CHL00181 cbbX CbbX; Provisiona 98.7 1.6E-07 3.4E-12 87.9 10.7 169 91-280 62-250 (287)
73 CHL00176 ftsH cell division pr 98.7 6.1E-08 1.3E-12 99.7 8.5 129 89-233 217-362 (638)
74 PRK05342 clpX ATP-dependent pr 98.7 9E-08 2E-12 93.6 9.3 66 90-155 110-188 (412)
75 KOG0734|consensus 98.7 9.6E-08 2.1E-12 92.9 9.2 131 87-235 336-485 (752)
76 TIGR03346 chaperone_ClpB ATP-d 98.7 1.1E-07 2.4E-12 101.8 10.6 101 91-201 598-718 (852)
77 PTZ00361 26 proteosome regulat 98.6 2.8E-07 6.1E-12 90.7 12.4 129 89-233 218-363 (438)
78 CHL00081 chlI Mg-protoporyphyr 98.6 2.7E-07 5.8E-12 88.0 11.4 89 140-239 144-234 (350)
79 PRK07003 DNA polymerase III su 98.6 7.5E-07 1.6E-11 91.5 15.2 138 78-240 25-197 (830)
80 PRK12323 DNA polymerase III su 98.6 8.4E-07 1.8E-11 90.0 15.4 139 78-241 25-203 (700)
81 PTZ00112 origin recognition co 98.6 6.5E-06 1.4E-10 85.5 21.8 274 75-379 765-1088(1164)
82 TIGR00362 DnaA chromosomal rep 98.6 3.1E-06 6.7E-11 83.4 19.0 149 67-234 111-278 (405)
83 COG1223 Predicted ATPase (AAA+ 98.6 9.2E-08 2E-12 85.4 7.3 130 89-233 152-293 (368)
84 TIGR03345 VI_ClpV1 type VI sec 98.6 2.4E-07 5.2E-12 98.7 11.8 100 92-201 600-719 (852)
85 TIGR02442 Cob-chelat-sub cobal 98.6 3.6E-07 7.8E-12 94.7 12.8 124 90-224 27-200 (633)
86 TIGR02031 BchD-ChlD magnesium 98.6 2.7E-07 5.9E-12 94.6 11.8 136 81-227 8-164 (589)
87 KOG0741|consensus 98.6 2.8E-07 6.1E-12 89.7 10.8 66 86-151 254-335 (744)
88 COG1222 RPT1 ATP-dependent 26S 98.6 3.3E-07 7.2E-12 85.5 10.9 141 85-237 182-338 (406)
89 TIGR01243 CDC48 AAA family ATP 98.6 1.2E-07 2.7E-12 100.1 8.8 130 88-233 487-631 (733)
90 TIGR02329 propionate_PrpR prop 98.6 5.6E-07 1.2E-11 90.8 13.1 144 71-225 218-385 (526)
91 CHL00095 clpC Clp protease ATP 98.6 1.4E-06 3E-11 93.2 16.7 100 92-201 543-662 (821)
92 PRK14961 DNA polymerase III su 98.6 1.8E-06 3.8E-11 83.8 16.1 137 79-240 26-197 (363)
93 PRK14086 dnaA chromosomal repl 98.6 5.8E-06 1.3E-10 83.9 20.1 126 90-234 316-456 (617)
94 PRK05022 anaerobic nitric oxid 98.6 9.2E-07 2E-11 89.6 14.5 145 71-226 193-360 (509)
95 PRK10865 protein disaggregatio 98.6 7.2E-07 1.6E-11 95.4 14.4 101 91-201 601-721 (857)
96 PRK11388 DNA-binding transcrip 98.6 5.3E-07 1.1E-11 94.0 13.0 145 71-226 331-495 (638)
97 PTZ00111 DNA replication licen 98.6 1E-06 2.2E-11 92.4 14.9 129 90-227 494-647 (915)
98 PLN00020 ribulose bisphosphate 98.6 2.8E-07 6E-12 87.2 9.4 153 74-233 128-307 (413)
99 TIGR03420 DnaA_homol_Hda DnaA 98.6 2E-06 4.4E-11 77.6 14.8 123 88-233 38-168 (226)
100 PRK14960 DNA polymerase III su 98.6 1.8E-06 3.9E-11 87.8 15.6 138 78-240 24-196 (702)
101 PRK07994 DNA polymerase III su 98.6 1.4E-06 3E-11 89.3 14.9 130 78-233 25-187 (647)
102 PRK14088 dnaA chromosomal repl 98.5 3.5E-06 7.5E-11 83.7 16.9 149 67-234 106-273 (440)
103 PRK14958 DNA polymerase III su 98.5 2.9E-06 6.3E-11 85.5 16.5 137 79-240 26-197 (509)
104 PRK00149 dnaA chromosomal repl 98.5 4.6E-06 1E-10 83.3 17.9 150 67-235 123-291 (450)
105 KOG0482|consensus 98.5 1.5E-06 3.3E-11 84.2 13.4 265 91-369 378-708 (721)
106 KOG0736|consensus 98.5 1.9E-06 4.2E-11 87.4 14.3 72 83-154 700-778 (953)
107 COG2204 AtoC Response regulato 98.5 1.6E-06 3.6E-11 85.0 13.5 145 71-226 147-314 (464)
108 PRK10733 hflB ATP-dependent me 98.5 4.1E-07 8.8E-12 94.5 9.9 133 88-232 185-330 (644)
109 COG0464 SpoVK ATPases of the A 98.5 3.4E-07 7.3E-12 92.6 9.1 133 86-234 274-420 (494)
110 PRK10923 glnG nitrogen regulat 98.5 8.9E-07 1.9E-11 89.0 11.7 144 71-225 144-310 (469)
111 TIGR01242 26Sp45 26S proteasom 98.5 1.9E-07 4.2E-12 90.6 6.7 129 89-233 157-302 (364)
112 PRK14963 DNA polymerase III su 98.5 4.1E-06 8.9E-11 84.2 16.1 140 78-242 23-196 (504)
113 PRK14957 DNA polymerase III su 98.5 3.3E-06 7.2E-11 85.3 15.4 131 77-233 24-187 (546)
114 COG1221 PspF Transcriptional r 98.5 2.7E-07 5.8E-12 88.9 7.2 174 86-281 99-306 (403)
115 PRK13342 recombination factor 98.5 1.1E-06 2.4E-11 86.8 11.8 116 91-234 39-161 (413)
116 PRK06645 DNA polymerase III su 98.5 3.8E-06 8.3E-11 84.2 15.7 137 79-240 31-206 (507)
117 PRK08084 DNA replication initi 98.5 2.3E-06 4.9E-11 77.9 12.9 147 67-234 23-177 (235)
118 PRK12422 chromosomal replicati 98.5 3.6E-05 7.9E-10 76.4 22.4 147 67-234 112-281 (445)
119 KOG0478|consensus 98.5 4.5E-07 9.7E-12 90.7 8.7 129 89-227 463-616 (804)
120 PRK10820 DNA-binding transcrip 98.5 1.1E-06 2.4E-11 89.2 11.6 145 71-226 210-377 (520)
121 PF14532 Sigma54_activ_2: Sigm 98.5 2.1E-07 4.5E-12 77.5 5.2 127 72-225 5-137 (138)
122 PRK06620 hypothetical protein; 98.5 3.8E-06 8.2E-11 75.3 13.6 132 65-234 15-157 (214)
123 PRK14969 DNA polymerase III su 98.5 5.5E-06 1.2E-10 84.0 16.4 130 78-233 25-187 (527)
124 PRK12402 replication factor C 98.5 3.3E-06 7.2E-11 80.9 14.2 139 77-240 23-203 (337)
125 PRK00411 cdc6 cell division co 98.5 8.5E-05 1.8E-09 72.9 24.4 126 91-234 58-217 (394)
126 PRK14964 DNA polymerase III su 98.5 7.5E-06 1.6E-10 81.6 16.7 138 78-240 22-194 (491)
127 PRK07940 DNA polymerase III su 98.5 5.1E-06 1.1E-10 81.0 15.1 124 91-240 39-192 (394)
128 PRK14951 DNA polymerase III su 98.4 5.6E-06 1.2E-10 84.8 15.9 139 78-242 25-204 (618)
129 PRK15429 formate hydrogenlyase 98.4 1.1E-06 2.5E-11 92.2 11.1 146 71-227 382-550 (686)
130 TIGR02928 orc1/cdc6 family rep 98.4 2.3E-05 4.9E-10 76.1 19.4 129 91-235 43-210 (365)
131 PRK14949 DNA polymerase III su 98.4 7.7E-06 1.7E-10 85.8 16.1 128 80-233 27-187 (944)
132 PRK05896 DNA polymerase III su 98.4 1.1E-05 2.3E-10 81.9 16.1 131 78-234 25-188 (605)
133 PRK09862 putative ATP-dependen 98.4 8.5E-07 1.8E-11 88.6 8.1 143 79-229 201-393 (506)
134 TIGR02915 PEP_resp_reg putativ 98.4 2.4E-06 5.3E-11 85.2 11.5 145 71-226 145-312 (445)
135 TIGR02397 dnaX_nterm DNA polym 98.4 1.2E-05 2.6E-10 77.7 15.8 140 78-242 23-197 (355)
136 PRK07133 DNA polymerase III su 98.4 1.3E-05 2.8E-10 83.0 16.2 139 76-240 25-196 (725)
137 PRK14959 DNA polymerase III su 98.4 1.1E-05 2.4E-10 82.2 15.5 131 78-233 25-187 (624)
138 smart00382 AAA ATPases associa 98.4 8.9E-07 1.9E-11 72.5 6.4 112 90-217 4-139 (148)
139 PRK08903 DnaA regulatory inact 98.4 8.8E-06 1.9E-10 73.6 13.4 119 88-233 42-166 (227)
140 PRK08691 DNA polymerase III su 98.4 1.5E-05 3.3E-10 81.8 16.3 138 78-240 25-197 (709)
141 PRK00440 rfc replication facto 98.3 1.6E-05 3.4E-10 75.6 15.5 139 77-240 25-180 (319)
142 PRK10865 protein disaggregatio 98.3 5.6E-07 1.2E-11 96.2 5.6 131 88-233 199-350 (857)
143 PRK06893 DNA replication initi 98.3 8.6E-06 1.9E-10 73.8 12.5 123 92-234 43-171 (229)
144 PRK05563 DNA polymerase III su 98.3 1.9E-05 4.2E-10 80.6 16.4 138 79-242 26-199 (559)
145 PRK13341 recombination factor 98.3 2.5E-05 5.3E-10 81.8 17.4 115 91-233 55-177 (725)
146 KOG0743|consensus 98.3 5.4E-06 1.2E-10 79.9 11.5 170 58-252 193-398 (457)
147 PRK09087 hypothetical protein; 98.3 1.4E-05 3E-10 72.3 13.2 140 65-234 20-163 (226)
148 KOG0731|consensus 98.3 2.5E-06 5.5E-11 87.6 9.1 141 87-239 343-500 (774)
149 KOG0744|consensus 98.3 2E-06 4.4E-11 79.2 7.6 164 58-234 134-337 (423)
150 PRK14965 DNA polymerase III su 98.3 2.2E-05 4.9E-10 80.5 16.1 137 78-240 25-197 (576)
151 PRK08451 DNA polymerase III su 98.3 3.3E-05 7.3E-10 77.7 16.9 140 78-242 23-197 (535)
152 PF00308 Bac_DnaA: Bacterial d 98.3 6.9E-05 1.5E-09 67.4 17.2 154 67-240 9-185 (219)
153 PRK08727 hypothetical protein; 98.3 2.4E-05 5.3E-10 71.1 14.3 125 90-235 43-173 (233)
154 PRK14948 DNA polymerase III su 98.2 3.8E-05 8.3E-10 79.2 16.7 135 75-234 22-190 (620)
155 KOG0733|consensus 98.2 4.5E-06 9.7E-11 82.8 9.2 130 87-232 544-687 (802)
156 PRK11361 acetoacetate metaboli 98.2 1E-05 2.2E-10 81.0 12.2 145 72-227 150-317 (457)
157 PRK15115 response regulator Gl 98.2 9.2E-06 2E-10 81.0 11.8 131 86-227 155-308 (444)
158 COG3829 RocR Transcriptional r 98.2 1.1E-05 2.3E-10 79.7 11.5 117 73-200 253-390 (560)
159 PRK14952 DNA polymerase III su 98.2 5E-05 1.1E-09 77.5 16.6 138 77-240 21-196 (584)
160 PRK13406 bchD magnesium chelat 98.2 5.1E-06 1.1E-10 84.8 9.5 137 81-229 16-174 (584)
161 KOG0739|consensus 98.2 4E-06 8.6E-11 76.5 7.6 127 89-230 167-305 (439)
162 TIGR02903 spore_lon_C ATP-depe 98.2 1.8E-05 4E-10 81.7 13.5 134 90-233 177-362 (615)
163 PRK07764 DNA polymerase III su 98.2 4.8E-05 1E-09 80.6 16.4 137 79-241 25-199 (824)
164 KOG0727|consensus 98.2 4E-06 8.7E-11 74.8 6.9 132 85-228 186-330 (408)
165 PRK14970 DNA polymerase III su 98.2 6E-05 1.3E-09 73.3 15.9 139 77-240 25-186 (367)
166 PRK14953 DNA polymerase III su 98.2 6.4E-05 1.4E-09 75.4 16.4 142 75-241 22-198 (486)
167 COG1474 CDC6 Cdc6-related prot 98.2 0.00018 4E-09 69.5 18.8 185 74-284 26-245 (366)
168 COG0606 Predicted ATPase with 98.2 4.6E-06 1E-10 81.0 7.5 117 76-200 186-335 (490)
169 TIGR00678 holB DNA polymerase 98.2 7.4E-05 1.6E-09 65.5 14.7 134 80-239 3-169 (188)
170 PRK14955 DNA polymerase III su 98.2 6.7E-05 1.4E-09 73.7 15.8 130 79-233 26-195 (397)
171 PRK05642 DNA replication initi 98.2 1.8E-05 3.9E-10 72.0 11.0 124 90-234 47-176 (234)
172 smart00763 AAA_PrkA PrkA AAA d 98.2 2E-05 4.3E-10 75.1 11.3 83 141-233 237-323 (361)
173 TIGR01818 ntrC nitrogen regula 98.2 3E-05 6.5E-10 77.8 13.3 144 71-225 140-306 (463)
174 KOG0989|consensus 98.1 2E-05 4.4E-10 72.3 10.8 131 78-233 45-197 (346)
175 PRK06647 DNA polymerase III su 98.1 5.4E-05 1.2E-09 77.2 15.2 130 78-233 25-187 (563)
176 PRK14087 dnaA chromosomal repl 98.1 0.0002 4.4E-09 71.3 18.7 149 67-234 116-285 (450)
177 PRK06305 DNA polymerase III su 98.1 0.00012 2.6E-09 72.9 16.5 131 79-234 27-190 (451)
178 PRK04132 replication factor C 98.1 7.3E-05 1.6E-09 78.9 14.6 114 96-234 574-699 (846)
179 PRK14950 DNA polymerase III su 98.1 0.00014 3.1E-09 74.9 16.4 132 78-234 25-189 (585)
180 PRK09111 DNA polymerase III su 98.1 0.00012 2.6E-09 75.1 15.5 139 79-242 34-212 (598)
181 COG1241 MCM2 Predicted ATPase 98.0 3E-05 6.4E-10 79.6 10.3 186 91-284 322-572 (682)
182 COG0593 DnaA ATPase involved i 98.0 0.00062 1.4E-08 66.1 18.0 148 67-235 88-255 (408)
183 PF00493 MCM: MCM2/3/5 family 97.9 3.4E-06 7.3E-11 80.7 1.9 131 89-227 58-211 (331)
184 KOG0740|consensus 97.9 8.4E-06 1.8E-10 79.0 4.2 132 89-231 187-327 (428)
185 COG1219 ClpX ATP-dependent pro 97.9 2E-05 4.4E-10 72.6 6.4 67 88-154 97-176 (408)
186 PRK14954 DNA polymerase III su 97.9 0.00044 9.6E-09 71.2 16.7 129 79-233 26-195 (620)
187 COG0542 clpA ATP-binding subun 97.9 0.0005 1.1E-08 71.6 16.9 132 87-233 190-342 (786)
188 PRK10365 transcriptional regul 97.9 0.00026 5.7E-09 70.5 14.7 129 88-227 162-313 (441)
189 COG3604 FhlA Transcriptional r 97.9 0.00022 4.7E-09 69.8 13.4 110 80-200 238-367 (550)
190 COG0470 HolB ATPase involved i 97.9 0.0001 2.3E-09 70.1 11.1 114 91-229 27-173 (325)
191 PRK14971 DNA polymerase III su 97.9 0.0006 1.3E-08 70.5 17.2 139 79-242 27-201 (614)
192 PF13173 AAA_14: AAA domain 97.9 1.7E-05 3.7E-10 65.0 4.8 65 89-153 3-74 (128)
193 TIGR00764 lon_rel lon-related 97.9 0.00028 6.1E-09 72.8 14.7 128 141-282 218-369 (608)
194 KOG0480|consensus 97.9 2.2E-05 4.7E-10 78.4 6.1 166 91-281 381-571 (764)
195 KOG0745|consensus 97.9 1.8E-05 3.9E-10 75.7 5.2 66 88-154 226-305 (564)
196 PRK05707 DNA polymerase III su 97.9 0.0002 4.4E-09 68.3 12.5 138 72-234 6-175 (328)
197 KOG2028|consensus 97.8 0.00014 3E-09 68.4 10.3 126 81-233 153-290 (554)
198 PF13401 AAA_22: AAA domain; P 97.8 1.1E-05 2.5E-10 65.9 2.8 72 88-159 4-107 (131)
199 COG0465 HflB ATP-dependent Zn 97.8 6.7E-05 1.5E-09 75.8 8.4 138 86-235 181-334 (596)
200 KOG0991|consensus 97.7 5.8E-05 1.3E-09 66.8 6.0 122 87-233 46-181 (333)
201 PRK09112 DNA polymerase III su 97.7 0.0012 2.6E-08 63.5 15.3 136 75-235 29-211 (351)
202 KOG0742|consensus 97.7 0.00053 1.2E-08 65.4 12.3 149 66-228 355-519 (630)
203 KOG0735|consensus 97.7 3.1E-05 6.7E-10 78.2 4.3 70 85-154 698-774 (952)
204 KOG0728|consensus 97.7 6.8E-05 1.5E-09 67.0 5.9 128 85-233 178-327 (404)
205 KOG2035|consensus 97.7 0.0067 1.5E-07 55.3 18.2 134 93-251 39-216 (351)
206 KOG1969|consensus 97.7 0.00011 2.4E-09 74.6 7.6 69 92-160 330-407 (877)
207 CHL00195 ycf46 Ycf46; Provisio 97.7 0.0039 8.4E-08 62.7 18.6 105 106-233 33-151 (489)
208 PRK08058 DNA polymerase III su 97.7 0.00094 2E-08 63.9 13.7 139 76-240 13-184 (329)
209 KOG1051|consensus 97.6 0.00015 3.3E-09 76.3 8.4 99 93-201 596-711 (898)
210 KOG0726|consensus 97.6 4.9E-05 1.1E-09 69.3 4.0 132 85-229 216-361 (440)
211 COG0464 SpoVK ATPases of the A 97.6 0.0013 2.8E-08 66.6 14.4 72 86-158 16-94 (494)
212 COG2812 DnaX DNA polymerase II 97.6 0.00049 1.1E-08 68.8 10.5 128 79-233 26-187 (515)
213 PRK06090 DNA polymerase III su 97.6 0.0023 5E-08 60.7 14.3 142 72-240 6-182 (319)
214 PF03028 Dynein_heavy: Dynein 97.5 0.0008 1.7E-08 71.2 12.2 216 87-325 115-351 (707)
215 PRK06871 DNA polymerase III su 97.5 0.0023 5.1E-08 60.8 14.1 140 71-235 4-177 (325)
216 PRK07993 DNA polymerase III su 97.5 0.0044 9.4E-08 59.4 16.0 144 72-240 5-183 (334)
217 KOG0729|consensus 97.5 0.00027 5.8E-09 63.8 7.1 121 84-229 207-353 (435)
218 PRK05564 DNA polymerase III su 97.5 0.0044 9.6E-08 58.9 15.9 133 75-233 10-161 (313)
219 KOG0481|consensus 97.5 0.00035 7.7E-09 68.3 8.2 123 91-223 367-512 (729)
220 PRK08769 DNA polymerase III su 97.5 0.0026 5.6E-08 60.3 13.6 145 71-241 6-188 (319)
221 TIGR02688 conserved hypothetic 97.5 0.0015 3.3E-08 63.5 11.7 141 83-242 204-352 (449)
222 PRK13765 ATP-dependent proteas 97.4 0.0021 4.6E-08 66.4 13.3 38 77-114 39-76 (637)
223 PRK08116 hypothetical protein; 97.4 0.0006 1.3E-08 63.3 8.4 61 89-150 115-188 (268)
224 TIGR03015 pepcterm_ATPase puta 97.4 0.00085 1.8E-08 62.1 9.3 46 68-113 22-68 (269)
225 PRK08181 transposase; Validate 97.4 0.0013 2.7E-08 61.0 10.2 83 72-155 90-182 (269)
226 PF05673 DUF815: Protein of un 97.4 0.0014 3E-08 59.2 9.7 94 90-200 54-150 (249)
227 PRK08118 topology modulation p 97.3 0.00025 5.4E-09 61.0 4.6 31 91-121 4-34 (167)
228 PRK07471 DNA polymerase III su 97.3 0.0098 2.1E-07 57.7 15.8 135 75-235 25-211 (365)
229 PRK08699 DNA polymerase III su 97.3 0.004 8.7E-08 59.4 12.8 143 72-241 4-188 (325)
230 COG3284 AcoR Transcriptional a 97.3 0.002 4.3E-08 65.0 10.7 192 68-282 316-538 (606)
231 PHA02624 large T antigen; Prov 97.3 0.00049 1.1E-08 69.5 6.4 128 77-221 420-558 (647)
232 TIGR00390 hslU ATP-dependent p 97.2 0.00022 4.8E-09 69.3 3.3 37 89-125 48-84 (441)
233 PRK06964 DNA polymerase III su 97.2 0.0054 1.2E-07 58.7 12.8 35 206-241 173-207 (342)
234 PF13177 DNA_pol3_delta2: DNA 97.2 0.0071 1.5E-07 51.6 12.3 123 76-223 4-160 (162)
235 PF03969 AFG1_ATPase: AFG1-lik 97.2 0.001 2.2E-08 64.2 7.4 123 87-229 61-207 (362)
236 PRK05201 hslU ATP-dependent pr 97.2 0.00026 5.6E-09 68.8 3.0 38 89-126 51-88 (443)
237 PRK09183 transposase/IS protei 97.1 0.00089 1.9E-08 61.8 5.8 71 85-155 99-179 (259)
238 PF13207 AAA_17: AAA domain; P 97.1 0.00025 5.4E-09 57.1 1.9 26 92-117 3-28 (121)
239 PRK06921 hypothetical protein; 97.0 0.0027 5.9E-08 58.8 8.0 62 88-151 117-188 (266)
240 COG3283 TyrR Transcriptional r 97.0 0.011 2.3E-07 56.0 11.7 129 89-227 228-373 (511)
241 KOG0477|consensus 97.0 0.0016 3.4E-08 65.3 6.5 120 91-221 485-628 (854)
242 PRK06526 transposase; Provisio 97.0 0.0019 4.2E-08 59.3 6.8 72 83-155 93-174 (254)
243 PF05970 PIF1: PIF1-like helic 97.0 0.0018 4E-08 62.8 7.0 99 71-169 3-131 (364)
244 PRK12377 putative replication 97.0 0.0018 4E-08 59.2 6.4 63 89-152 102-175 (248)
245 PF00910 RNA_helicase: RNA hel 97.0 0.00044 9.4E-09 54.8 2.0 63 92-155 2-64 (107)
246 PRK07261 topology modulation p 96.9 0.0013 2.8E-08 56.7 4.9 28 91-118 3-30 (171)
247 PRK06835 DNA replication prote 96.9 0.0027 5.8E-08 60.6 7.3 66 87-154 182-260 (329)
248 PF12780 AAA_8: P-loop contain 96.9 0.006 1.3E-07 56.5 9.3 97 66-162 8-111 (268)
249 PHA02774 E1; Provisional 96.9 0.0047 1E-07 62.3 9.0 113 90-221 436-552 (613)
250 COG1224 TIP49 DNA helicase TIP 96.9 0.00045 9.8E-09 64.9 1.7 55 74-128 47-107 (450)
251 PRK07952 DNA replication prote 96.9 0.0022 4.7E-08 58.5 6.0 64 90-154 101-176 (244)
252 PRK07399 DNA polymerase III su 96.8 0.029 6.3E-07 53.3 13.5 133 76-235 11-193 (314)
253 PF13245 AAA_19: Part of AAA d 96.8 0.002 4.3E-08 47.5 4.2 39 83-122 5-51 (76)
254 KOG0652|consensus 96.8 0.004 8.6E-08 56.3 6.7 126 86-233 203-354 (424)
255 PRK10536 hypothetical protein; 96.7 0.0059 1.3E-07 55.7 7.8 40 70-110 57-96 (262)
256 PF06068 TIP49: TIP49 C-termin 96.7 0.00045 9.7E-09 65.7 0.2 63 66-128 24-92 (398)
257 PF05729 NACHT: NACHT domain 96.7 0.0049 1.1E-07 52.1 6.5 22 91-112 3-24 (166)
258 KOG2170|consensus 96.6 0.016 3.4E-07 53.6 9.7 72 93-164 115-202 (344)
259 cd01120 RecA-like_NTPases RecA 96.6 0.012 2.6E-07 49.4 8.6 35 92-126 3-40 (165)
260 PF01695 IstB_IS21: IstB-like 96.6 0.0056 1.2E-07 53.2 6.2 85 83-170 42-136 (178)
261 KOG0651|consensus 96.5 0.0028 6.1E-08 58.6 3.9 69 84-152 162-237 (388)
262 PF03215 Rad17: Rad17 cell cyc 96.5 0.0019 4.1E-08 65.3 3.0 32 92-123 49-80 (519)
263 PF13604 AAA_30: AAA domain; P 96.5 0.0051 1.1E-07 54.3 5.4 75 85-160 14-113 (196)
264 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0019 4.2E-08 53.0 2.5 42 74-115 8-49 (133)
265 PRK00131 aroK shikimate kinase 96.4 0.0013 2.7E-08 56.5 1.4 29 89-117 5-33 (175)
266 PRK05917 DNA polymerase III su 96.4 0.12 2.5E-06 48.4 14.4 124 76-224 4-154 (290)
267 COG1102 Cmk Cytidylate kinase 96.4 0.0026 5.7E-08 53.4 3.0 27 92-118 4-30 (179)
268 COG1484 DnaC DNA replication p 96.4 0.011 2.3E-07 54.4 7.2 77 78-156 95-183 (254)
269 PRK08939 primosomal protein Dn 96.4 0.032 6.8E-07 52.8 10.4 65 88-153 156-230 (306)
270 COG1220 HslU ATP-dependent pro 96.4 0.0018 3.9E-08 60.5 1.9 42 89-130 51-92 (444)
271 PF13671 AAA_33: AAA domain; P 96.3 0.0019 4.2E-08 53.5 1.8 22 92-113 3-24 (143)
272 COG4650 RtcR Sigma54-dependent 96.3 0.013 2.9E-07 53.8 7.1 115 74-198 193-330 (531)
273 PHA01747 putative ATP-dependen 96.3 0.023 4.9E-07 54.2 8.7 59 94-156 196-258 (425)
274 PRK04040 adenylate kinase; Pro 96.2 0.012 2.7E-07 51.5 6.6 61 91-162 5-68 (188)
275 cd02020 CMPK Cytidine monophos 96.2 0.0027 5.8E-08 52.8 2.1 29 92-120 3-31 (147)
276 PRK13947 shikimate kinase; Pro 96.2 0.0026 5.6E-08 54.6 2.0 28 91-118 4-31 (171)
277 KOG3347|consensus 96.2 0.0032 7E-08 52.0 2.4 27 91-117 10-36 (176)
278 COG1485 Predicted ATPase [Gene 96.2 0.0071 1.5E-07 57.1 4.8 119 89-227 66-208 (367)
279 PF03029 ATP_bind_1: Conserved 96.1 0.004 8.7E-08 56.7 3.1 34 93-126 1-37 (238)
280 PHA00729 NTP-binding motif con 96.1 0.0041 8.8E-08 55.7 2.8 34 206-240 109-142 (226)
281 KOG0732|consensus 96.1 0.0072 1.6E-07 64.7 5.1 127 88-233 299-447 (1080)
282 TIGR01313 therm_gnt_kin carboh 96.1 0.0035 7.6E-08 53.4 2.3 25 92-116 2-26 (163)
283 cd00464 SK Shikimate kinase (S 96.1 0.0034 7.3E-08 52.7 2.2 27 91-117 2-28 (154)
284 KOG1970|consensus 96.1 0.0034 7.4E-08 62.2 2.4 29 92-120 114-142 (634)
285 PRK05800 cobU adenosylcobinami 96.0 0.021 4.6E-07 49.1 6.9 43 91-133 4-46 (170)
286 TIGR00602 rad24 checkpoint pro 96.0 0.022 4.8E-07 58.9 8.0 26 91-116 113-138 (637)
287 PF02367 UPF0079: Uncharacteri 96.0 0.0036 7.9E-08 50.6 1.9 41 75-115 2-42 (123)
288 PRK03839 putative kinase; Prov 96.0 0.0034 7.4E-08 54.4 1.9 28 91-118 3-30 (180)
289 PRK00625 shikimate kinase; Pro 96.0 0.0037 8.1E-08 54.0 1.9 28 91-118 3-30 (173)
290 KOG0741|consensus 95.9 0.016 3.5E-07 57.4 6.2 79 74-152 520-610 (744)
291 PF13086 AAA_11: AAA domain; P 95.9 0.0037 8.1E-08 56.0 1.7 32 81-112 10-41 (236)
292 COG1936 Predicted nucleotide k 95.9 0.0033 7.2E-08 53.4 1.2 28 91-119 3-30 (180)
293 TIGR03574 selen_PSTK L-seryl-t 95.9 0.0084 1.8E-07 55.0 4.0 59 92-150 3-77 (249)
294 KOG0990|consensus 95.8 0.068 1.5E-06 49.9 9.5 109 92-225 66-191 (360)
295 PRK06217 hypothetical protein; 95.8 0.005 1.1E-07 53.6 2.0 27 91-117 4-30 (183)
296 PRK13949 shikimate kinase; Pro 95.8 0.0052 1.1E-07 52.9 1.9 29 90-118 3-31 (169)
297 KOG1533|consensus 95.7 0.0096 2.1E-07 53.0 3.4 38 89-126 3-43 (290)
298 PRK06762 hypothetical protein; 95.7 0.0074 1.6E-07 51.5 2.7 30 91-120 5-34 (166)
299 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.0065 1.4E-07 52.7 2.3 29 92-122 3-31 (183)
300 PRK12723 flagellar biosynthesi 95.7 0.042 9.1E-07 53.6 8.0 34 91-124 177-217 (388)
301 cd02019 NK Nucleoside/nucleoti 95.7 0.011 2.5E-07 42.5 3.1 28 92-119 3-31 (69)
302 TIGR02782 TrbB_P P-type conjug 95.7 0.013 2.8E-07 55.3 4.3 37 77-113 121-157 (299)
303 PRK13946 shikimate kinase; Pro 95.7 0.0065 1.4E-07 53.0 2.2 30 88-117 10-39 (184)
304 PRK06696 uridine kinase; Valid 95.6 0.0078 1.7E-07 54.2 2.7 36 93-128 27-65 (223)
305 PRK14530 adenylate kinase; Pro 95.6 0.0065 1.4E-07 54.4 2.0 28 90-117 5-32 (215)
306 cd01130 VirB11-like_ATPase Typ 95.6 0.0088 1.9E-07 52.3 2.8 39 75-113 12-50 (186)
307 KOG0479|consensus 95.6 0.016 3.5E-07 57.9 4.7 122 91-221 337-480 (818)
308 cd00227 CPT Chloramphenicol (C 95.6 0.0053 1.1E-07 53.1 1.3 29 91-119 5-33 (175)
309 PRK14532 adenylate kinase; Pro 95.6 0.0069 1.5E-07 52.9 2.0 27 91-117 3-29 (188)
310 TIGR03499 FlhF flagellar biosy 95.6 0.026 5.7E-07 52.8 6.0 33 92-124 198-235 (282)
311 PRK13833 conjugal transfer pro 95.6 0.015 3.3E-07 55.2 4.4 35 78-112 134-168 (323)
312 PF01443 Viral_helicase1: Vira 95.5 0.011 2.4E-07 53.3 3.4 68 92-159 2-81 (234)
313 TIGR01360 aden_kin_iso1 adenyl 95.5 0.0081 1.8E-07 52.2 2.2 25 92-116 7-31 (188)
314 cd02021 GntK Gluconate kinase 95.5 0.0077 1.7E-07 50.4 2.0 31 92-124 3-33 (150)
315 PF01745 IPT: Isopentenyl tran 95.5 0.0084 1.8E-07 52.9 2.2 28 92-119 5-32 (233)
316 PRK03731 aroL shikimate kinase 95.5 0.0086 1.9E-07 51.4 2.3 28 90-117 4-31 (171)
317 PRK05057 aroK shikimate kinase 95.5 0.0062 1.4E-07 52.5 1.3 29 89-117 5-33 (172)
318 PF13191 AAA_16: AAA ATPase do 95.5 0.0058 1.3E-07 52.8 1.1 36 89-124 25-63 (185)
319 PF13521 AAA_28: AAA domain; P 95.5 0.0048 1.1E-07 52.5 0.6 25 92-117 3-27 (163)
320 cd03115 SRP The signal recogni 95.5 0.012 2.7E-07 50.6 3.1 33 92-124 4-39 (173)
321 COG0703 AroK Shikimate kinase 95.4 0.0079 1.7E-07 51.4 1.8 29 89-117 3-31 (172)
322 PRK14531 adenylate kinase; Pro 95.4 0.0089 1.9E-07 52.1 2.1 26 91-116 5-30 (183)
323 PRK14722 flhF flagellar biosyn 95.4 0.036 7.7E-07 53.7 6.4 35 90-124 139-178 (374)
324 cd01428 ADK Adenylate kinase ( 95.4 0.0084 1.8E-07 52.4 2.0 27 91-117 2-28 (194)
325 PF13238 AAA_18: AAA domain; P 95.4 0.0054 1.2E-07 49.5 0.6 21 92-112 2-22 (129)
326 PRK07132 DNA polymerase III su 95.3 0.87 1.9E-05 42.9 15.2 134 79-239 6-163 (299)
327 PRK06547 hypothetical protein; 95.2 0.0095 2.1E-07 51.4 1.8 26 92-117 19-44 (172)
328 PRK00023 cmk cytidylate kinase 95.2 0.089 1.9E-06 47.5 8.1 27 91-117 7-33 (225)
329 PRK04182 cytidylate kinase; Pr 95.2 0.0098 2.1E-07 51.2 1.9 27 91-117 3-29 (180)
330 PRK10078 ribose 1,5-bisphospho 95.2 0.0086 1.9E-07 52.3 1.5 26 90-115 4-29 (186)
331 PF00406 ADK: Adenylate kinase 95.2 0.012 2.6E-07 49.4 2.3 25 93-117 1-25 (151)
332 TIGR02173 cyt_kin_arch cytidyl 95.2 0.01 2.2E-07 50.7 1.8 27 91-117 3-29 (171)
333 cd02027 APSK Adenosine 5'-phos 95.2 0.013 2.9E-07 49.2 2.5 29 92-120 3-34 (149)
334 COG0563 Adk Adenylate kinase a 95.1 0.012 2.6E-07 51.0 2.0 26 91-116 3-28 (178)
335 PRK02496 adk adenylate kinase; 95.1 0.014 3E-07 50.8 2.4 27 91-117 4-30 (184)
336 PF00448 SRP54: SRP54-type pro 95.1 0.013 2.9E-07 51.6 2.2 33 91-123 4-39 (196)
337 PRK10646 ADP-binding protein; 95.1 0.015 3.3E-07 48.9 2.4 42 74-115 14-55 (153)
338 PRK08233 hypothetical protein; 95.1 0.014 3.1E-07 50.4 2.3 31 92-122 7-38 (182)
339 PF05272 VirE: Virulence-assoc 95.1 0.058 1.3E-06 47.6 6.2 92 91-200 55-149 (198)
340 cd02028 UMPK_like Uridine mono 95.0 0.014 3E-07 50.7 2.2 34 92-125 3-39 (179)
341 PRK05480 uridine/cytidine kina 95.0 0.018 3.8E-07 51.3 2.9 34 91-124 9-43 (209)
342 PF05621 TniB: Bacterial TniB 95.0 0.087 1.9E-06 49.2 7.5 64 66-129 34-111 (302)
343 PTZ00088 adenylate kinase 1; P 95.0 0.015 3.2E-07 52.7 2.2 51 91-143 9-64 (229)
344 PRK14528 adenylate kinase; Pro 95.0 0.015 3.3E-07 50.8 2.3 27 91-117 4-30 (186)
345 TIGR02768 TraA_Ti Ti-type conj 94.9 0.072 1.6E-06 56.7 7.5 75 85-159 365-458 (744)
346 TIGR01351 adk adenylate kinase 94.9 0.016 3.4E-07 51.7 2.2 28 91-118 2-29 (210)
347 cd02023 UMPK Uridine monophosp 94.9 0.023 5.1E-07 50.0 3.2 32 92-123 3-35 (198)
348 COG4088 Predicted nucleotide k 94.8 0.014 3E-07 51.1 1.5 25 92-116 5-29 (261)
349 cd01123 Rad51_DMC1_radA Rad51_ 94.8 0.091 2E-06 47.4 7.1 44 92-135 23-75 (235)
350 PRK04296 thymidine kinase; Pro 94.8 0.074 1.6E-06 46.6 6.2 31 91-121 5-38 (190)
351 PRK06851 hypothetical protein; 94.8 0.042 9.2E-07 53.0 4.8 63 62-124 186-253 (367)
352 PRK13900 type IV secretion sys 94.7 0.035 7.6E-07 53.1 4.2 36 79-114 151-186 (332)
353 COG2804 PulE Type II secretory 94.7 0.042 9.1E-07 54.5 4.8 37 79-115 248-285 (500)
354 PRK13851 type IV secretion sys 94.7 0.02 4.3E-07 55.0 2.5 36 79-114 153-188 (344)
355 PRK13948 shikimate kinase; Pro 94.7 0.018 3.8E-07 50.2 1.9 29 89-117 11-39 (182)
356 PRK08154 anaerobic benzoate ca 94.6 0.022 4.7E-07 54.0 2.6 31 87-117 132-162 (309)
357 PRK05703 flhF flagellar biosyn 94.6 0.14 2.9E-06 50.8 8.2 34 91-124 224-262 (424)
358 TIGR02525 plasmid_TraJ plasmid 94.6 0.075 1.6E-06 51.6 6.2 54 45-112 119-173 (372)
359 PRK00279 adk adenylate kinase; 94.5 0.022 4.8E-07 50.9 2.3 27 91-117 3-29 (215)
360 TIGR02322 phosphon_PhnN phosph 94.5 0.018 3.9E-07 49.8 1.6 24 91-114 4-27 (179)
361 PLN02200 adenylate kinase fami 94.5 0.025 5.4E-07 51.4 2.5 30 92-123 47-76 (234)
362 cd01128 rho_factor Transcripti 94.5 0.18 3.8E-06 46.2 8.1 60 86-151 14-79 (249)
363 PRK07667 uridine kinase; Provi 94.5 0.034 7.3E-07 48.9 3.2 34 92-125 21-57 (193)
364 COG0283 Cmk Cytidylate kinase 94.4 0.029 6.3E-07 49.5 2.7 26 91-116 7-32 (222)
365 cd02029 PRK_like Phosphoribulo 94.4 0.082 1.8E-06 48.6 5.6 59 92-150 3-64 (277)
366 COG0802 Predicted ATPase or ki 94.4 0.03 6.5E-07 46.6 2.5 41 74-114 11-51 (149)
367 PRK05818 DNA polymerase III su 94.4 0.7 1.5E-05 42.4 11.6 24 89-112 8-31 (261)
368 PRK13894 conjugal transfer ATP 94.4 0.033 7.1E-07 53.0 3.1 34 79-112 139-172 (319)
369 TIGR01618 phage_P_loop phage n 94.4 0.031 6.7E-07 50.1 2.8 19 91-109 15-33 (220)
370 KOG1514|consensus 94.4 3.5 7.7E-05 42.8 17.5 38 93-130 427-474 (767)
371 TIGR00064 ftsY signal recognit 94.4 0.033 7.1E-07 51.8 3.0 33 91-123 75-110 (272)
372 COG1222 RPT1 ATP-dependent 26S 94.4 0.064 1.4E-06 50.9 4.8 49 329-383 145-198 (406)
373 PF03266 NTPase_1: NTPase; In 94.3 0.027 5.7E-07 48.4 2.2 28 92-119 3-33 (168)
374 TIGR01425 SRP54_euk signal rec 94.3 0.03 6.5E-07 55.1 2.8 34 92-125 104-140 (429)
375 PF06431 Polyoma_lg_T_C: Polyo 94.3 0.019 4E-07 54.6 1.2 134 74-221 137-282 (417)
376 PF07931 CPT: Chloramphenicol 94.3 0.017 3.7E-07 49.8 1.0 32 91-122 4-35 (174)
377 TIGR02237 recomb_radB DNA repa 94.3 0.075 1.6E-06 47.1 5.1 43 92-135 16-61 (209)
378 COG1419 FlhF Flagellar GTP-bin 94.3 0.036 7.9E-07 53.6 3.2 23 91-113 206-228 (407)
379 PRK11545 gntK gluconate kinase 94.3 0.034 7.4E-07 47.5 2.8 23 94-116 1-23 (163)
380 KOG2543|consensus 94.3 0.1 2.2E-06 49.9 6.1 39 92-130 34-72 (438)
381 PRK13889 conjugal transfer rel 94.2 0.14 3E-06 55.7 7.8 77 84-160 358-453 (988)
382 TIGR00376 DNA helicase, putati 94.2 0.045 9.8E-07 57.1 4.0 45 74-118 159-206 (637)
383 PF13479 AAA_24: AAA domain 94.2 0.052 1.1E-06 48.5 3.9 59 89-152 4-80 (213)
384 PRK09361 radB DNA repair and r 94.2 0.082 1.8E-06 47.5 5.2 43 92-135 27-72 (225)
385 cd02025 PanK Pantothenate kina 94.2 0.048 1E-06 49.0 3.6 34 92-125 3-41 (220)
386 PRK14737 gmk guanylate kinase; 94.1 0.019 4.2E-07 50.2 0.9 34 90-123 6-39 (186)
387 TIGR00767 rho transcription te 94.1 0.29 6.2E-06 47.8 9.0 49 87-135 167-221 (415)
388 PF14516 AAA_35: AAA-like doma 94.1 0.73 1.6E-05 44.1 11.8 48 73-123 19-69 (331)
389 TIGR01613 primase_Cterm phage/ 94.1 0.091 2E-06 49.7 5.5 119 91-221 79-201 (304)
390 PF00485 PRK: Phosphoribulokin 94.1 0.025 5.5E-07 49.7 1.6 23 92-114 3-25 (194)
391 cd01672 TMPK Thymidine monopho 94.1 0.062 1.3E-06 46.9 4.1 32 91-122 3-37 (200)
392 PF02562 PhoH: PhoH-like prote 94.1 0.036 7.8E-07 49.1 2.5 39 71-110 3-41 (205)
393 cd01124 KaiC KaiC is a circadi 94.0 0.049 1.1E-06 47.2 3.3 38 92-131 3-43 (187)
394 PRK06851 hypothetical protein; 94.0 0.063 1.4E-06 51.8 4.3 38 91-128 33-73 (367)
395 PRK01184 hypothetical protein; 94.0 0.03 6.6E-07 48.6 2.0 26 91-117 4-29 (184)
396 KOG1942|consensus 94.0 0.022 4.9E-07 52.4 1.2 40 87-126 63-104 (456)
397 PRK13768 GTPase; Provisional 94.0 0.039 8.5E-07 50.7 2.7 36 91-126 5-43 (253)
398 PF06048 DUF927: Domain of unk 94.0 0.062 1.3E-06 50.4 4.1 63 91-156 196-258 (286)
399 PF06745 KaiC: KaiC; InterPro 94.0 0.23 5.1E-06 44.6 7.7 58 92-151 23-91 (226)
400 PRK10416 signal recognition pa 94.0 0.043 9.3E-07 52.2 3.0 32 92-123 118-152 (318)
401 PRK14527 adenylate kinase; Pro 93.9 0.028 6E-07 49.3 1.6 26 91-116 9-34 (191)
402 cd00544 CobU Adenosylcobinamid 93.9 0.083 1.8E-06 45.4 4.4 41 92-132 3-43 (169)
403 PRK14729 miaA tRNA delta(2)-is 93.9 0.024 5.1E-07 53.3 1.1 31 90-123 6-36 (300)
404 TIGR01448 recD_rel helicase, p 93.9 0.19 4.1E-06 53.3 7.9 73 88-160 338-436 (720)
405 cd01131 PilT Pilus retraction 93.9 0.026 5.6E-07 49.9 1.2 22 92-113 5-26 (198)
406 PLN02165 adenylate isopentenyl 93.9 0.034 7.3E-07 52.8 2.0 30 92-123 47-76 (334)
407 PRK00889 adenylylsulfate kinas 93.8 0.054 1.2E-06 46.6 3.2 31 91-121 7-40 (175)
408 PRK00300 gmk guanylate kinase; 93.8 0.024 5.1E-07 50.1 0.9 26 89-114 6-31 (205)
409 PRK00771 signal recognition pa 93.8 0.044 9.6E-07 54.3 2.8 34 91-124 98-134 (437)
410 TIGR01526 nadR_NMN_Atrans nico 93.8 0.036 7.8E-07 52.9 2.1 34 83-116 155-190 (325)
411 PRK14526 adenylate kinase; Pro 93.7 0.042 9E-07 49.1 2.3 26 91-116 3-28 (211)
412 PRK00091 miaA tRNA delta(2)-is 93.7 0.04 8.6E-07 52.1 2.3 31 91-123 7-37 (307)
413 PRK14237 phosphate transporter 93.7 0.025 5.5E-07 52.4 0.9 27 86-112 44-70 (267)
414 PF13337 Lon_2: Putative ATP-d 93.7 0.18 3.8E-06 49.7 6.7 139 87-242 207-350 (457)
415 cd01393 recA_like RecA is a b 93.7 0.27 5.8E-06 44.0 7.6 44 92-135 23-75 (226)
416 PRK14974 cell division protein 93.7 0.047 1E-06 52.2 2.6 33 91-123 143-178 (336)
417 cd00071 GMPK Guanosine monopho 93.6 0.035 7.7E-07 45.9 1.5 24 92-115 3-26 (137)
418 cd03114 ArgK-like The function 93.6 0.076 1.7E-06 44.5 3.5 35 92-126 3-40 (148)
419 TIGR00017 cmk cytidylate kinas 93.6 0.049 1.1E-06 48.9 2.4 27 91-117 5-31 (217)
420 PRK15455 PrkA family serine pr 93.5 0.037 8.1E-07 56.1 1.8 30 92-121 107-137 (644)
421 PF00437 T2SE: Type II/IV secr 93.5 0.033 7.1E-07 51.6 1.3 75 76-150 115-207 (270)
422 PRK12726 flagellar biosynthesi 93.5 0.064 1.4E-06 51.9 3.3 36 90-125 208-246 (407)
423 PRK13975 thymidylate kinase; P 93.5 0.033 7.1E-07 48.8 1.2 26 90-115 4-29 (196)
424 PLN02199 shikimate kinase 93.5 0.042 9.2E-07 51.2 1.9 30 88-117 102-131 (303)
425 PRK10867 signal recognition pa 93.4 0.062 1.4E-06 53.2 3.2 34 92-125 104-141 (433)
426 PRK08099 bifunctional DNA-bind 93.4 0.041 8.8E-07 54.0 1.9 26 91-116 222-247 (399)
427 PTZ00301 uridine kinase; Provi 93.4 0.083 1.8E-06 47.1 3.7 21 92-112 7-27 (210)
428 TIGR00041 DTMP_kinase thymidyl 93.4 0.089 1.9E-06 46.0 3.8 33 90-122 5-40 (195)
429 TIGR03263 guanyl_kin guanylate 93.4 0.028 6E-07 48.6 0.5 26 90-115 3-28 (180)
430 COG2607 Predicted ATPase (AAA+ 93.3 0.28 6.1E-06 44.2 6.7 107 90-217 87-196 (287)
431 PF04851 ResIII: Type III rest 93.3 0.079 1.7E-06 45.3 3.3 48 72-119 6-56 (184)
432 PRK15453 phosphoribulokinase; 93.3 0.21 4.5E-06 46.4 6.1 57 92-150 9-70 (290)
433 TIGR00235 udk uridine kinase. 93.2 0.065 1.4E-06 47.6 2.7 33 91-123 9-42 (207)
434 PRK05541 adenylylsulfate kinas 93.2 0.02 4.2E-07 49.5 -0.6 25 90-114 9-33 (176)
435 PRK12724 flagellar biosynthesi 93.2 0.066 1.4E-06 52.5 2.9 33 91-123 226-262 (432)
436 cd02024 NRK1 Nicotinamide ribo 93.2 0.052 1.1E-06 47.5 1.9 22 92-113 3-24 (187)
437 PHA02530 pseT polynucleotide k 93.2 0.051 1.1E-06 51.1 2.1 23 91-113 5-27 (300)
438 PRK07276 DNA polymerase III su 93.2 2.3 5.1E-05 39.8 13.0 136 76-240 9-177 (290)
439 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.1 0.14 3.1E-06 42.6 4.5 75 86-160 24-109 (144)
440 PRK13973 thymidylate kinase; P 93.1 0.11 2.3E-06 46.5 3.8 36 90-125 5-43 (213)
441 PRK04301 radA DNA repair and r 93.1 0.16 3.4E-06 48.4 5.2 44 93-136 107-159 (317)
442 PRK14529 adenylate kinase; Pro 93.1 0.051 1.1E-06 48.9 1.7 27 91-117 3-29 (223)
443 PRK11889 flhF flagellar biosyn 93.0 0.074 1.6E-06 51.7 2.9 42 91-133 244-288 (436)
444 KOG1803|consensus 93.0 0.058 1.3E-06 54.3 2.2 44 80-123 193-237 (649)
445 TIGR00174 miaA tRNA isopenteny 93.0 0.064 1.4E-06 50.1 2.3 30 92-123 3-32 (287)
446 PLN02674 adenylate kinase 93.0 0.069 1.5E-06 48.7 2.5 28 89-116 32-59 (244)
447 TIGR00959 ffh signal recogniti 93.0 0.074 1.6E-06 52.6 2.9 34 91-124 102-139 (428)
448 PF13555 AAA_29: P-loop contai 92.9 0.058 1.3E-06 37.9 1.5 22 91-112 26-47 (62)
449 PRK13826 Dtr system oriT relax 92.9 0.26 5.7E-06 54.1 7.1 74 87-160 396-488 (1102)
450 TIGR02236 recomb_radA DNA repa 92.8 0.18 3.8E-06 47.9 5.2 43 93-135 100-151 (310)
451 PRK12339 2-phosphoglycerate ki 92.8 0.072 1.6E-06 47.0 2.4 26 91-116 6-31 (197)
452 PRK12608 transcription termina 92.8 0.63 1.4E-05 45.0 8.8 49 88-136 133-187 (380)
453 cd03222 ABC_RNaseL_inhibitor T 92.8 0.28 6.1E-06 42.4 6.0 79 86-164 23-114 (177)
454 cd01129 PulE-GspE PulE/GspE Th 92.8 0.11 2.3E-06 48.2 3.5 33 81-113 72-105 (264)
455 PRK06995 flhF flagellar biosyn 92.8 0.089 1.9E-06 52.7 3.2 33 91-123 259-296 (484)
456 PF10443 RNA12: RNA12 protein; 92.7 0.13 2.9E-06 50.2 4.2 63 90-152 19-82 (431)
457 TIGR02788 VirB11 P-type DNA tr 92.7 0.068 1.5E-06 50.6 2.3 34 80-113 136-169 (308)
458 TIGR00455 apsK adenylylsulfate 92.7 0.2 4.3E-06 43.5 5.0 31 91-121 21-54 (184)
459 PRK04220 2-phosphoglycerate ki 92.7 0.07 1.5E-06 50.0 2.2 38 82-120 83-123 (301)
460 cd01394 radB RadB. The archaea 92.7 0.17 3.6E-06 45.2 4.6 56 92-148 23-83 (218)
461 COG3842 PotA ABC-type spermidi 92.7 0.038 8.2E-07 52.9 0.4 25 87-111 30-54 (352)
462 PLN02459 probable adenylate ki 92.7 0.081 1.7E-06 48.6 2.5 51 91-143 32-87 (261)
463 PF08423 Rad51: Rad51; InterP 92.7 0.17 3.6E-06 46.6 4.7 43 93-135 43-94 (256)
464 TIGR02524 dot_icm_DotB Dot/Icm 92.7 0.071 1.5E-06 51.6 2.3 22 91-112 137-158 (358)
465 PF06309 Torsin: Torsin; Inte 92.6 0.075 1.6E-06 43.0 2.0 20 93-112 58-77 (127)
466 TIGR01663 PNK-3'Pase polynucle 92.6 0.13 2.8E-06 52.2 4.2 59 91-151 372-430 (526)
467 PRK09825 idnK D-gluconate kina 92.6 0.086 1.9E-06 45.6 2.4 31 91-123 6-36 (176)
468 PRK14730 coaE dephospho-CoA ki 92.5 0.084 1.8E-06 46.5 2.4 31 91-123 4-34 (195)
469 COG3854 SpoIIIAA ncharacterize 92.5 0.066 1.4E-06 47.8 1.7 22 91-112 140-161 (308)
470 TIGR00750 lao LAO/AO transport 92.5 0.13 2.9E-06 48.4 3.9 36 91-126 37-75 (300)
471 COG3839 MalK ABC-type sugar tr 92.5 0.039 8.4E-07 52.6 0.2 28 86-113 27-54 (338)
472 PRK06761 hypothetical protein; 92.5 0.088 1.9E-06 49.0 2.5 29 91-119 6-34 (282)
473 PLN02840 tRNA dimethylallyltra 92.5 0.072 1.6E-06 52.2 2.0 26 91-116 24-49 (421)
474 COG1117 PstB ABC-type phosphat 92.4 0.053 1.2E-06 47.9 1.0 28 85-112 30-57 (253)
475 PF01583 APS_kinase: Adenylyls 92.4 0.12 2.6E-06 43.7 3.1 30 92-121 6-38 (156)
476 KOG3354|consensus 92.4 0.088 1.9E-06 44.0 2.2 44 93-138 17-60 (191)
477 PF08303 tRNA_lig_kinase: tRNA 92.4 0.27 5.8E-06 41.7 5.0 58 92-150 3-64 (168)
478 PRK09376 rho transcription ter 92.4 0.63 1.4E-05 45.3 8.2 28 87-114 168-195 (416)
479 KOG0727|consensus 92.3 0.086 1.9E-06 47.6 2.2 23 361-383 178-202 (408)
480 PRK11860 bifunctional 3-phosph 92.3 0.32 7E-06 51.1 6.9 25 92-116 446-470 (661)
481 PRK09435 membrane ATPase/prote 92.3 0.14 3E-06 49.0 3.7 35 92-126 60-97 (332)
482 cd00820 PEPCK_HprK Phosphoenol 92.2 0.037 7.9E-07 43.6 -0.3 22 88-109 15-36 (107)
483 PF00625 Guanylate_kin: Guanyl 92.2 0.087 1.9E-06 45.7 2.0 36 88-123 2-38 (183)
484 PRK12338 hypothetical protein; 92.2 0.08 1.7E-06 50.0 1.9 25 92-116 8-32 (319)
485 PRK09518 bifunctional cytidyla 92.2 0.084 1.8E-06 56.0 2.2 25 92-116 5-29 (712)
486 PRK08356 hypothetical protein; 92.2 0.086 1.9E-06 46.3 2.0 30 91-123 8-37 (195)
487 COG4619 ABC-type uncharacteriz 92.1 0.049 1.1E-06 46.3 0.4 29 84-112 25-53 (223)
488 COG1116 TauB ABC-type nitrate/ 92.1 0.045 9.7E-07 49.4 0.1 28 85-112 26-53 (248)
489 cd00267 ABC_ATPase ABC (ATP-bi 92.0 0.39 8.5E-06 40.4 5.8 76 87-162 24-121 (157)
490 PRK05973 replicative DNA helic 92.0 0.07 1.5E-06 48.4 1.2 34 91-124 67-103 (237)
491 COG0324 MiaA tRNA delta(2)-iso 91.9 0.11 2.3E-06 48.9 2.4 29 91-119 6-34 (308)
492 PRK05439 pantothenate kinase; 91.9 0.18 4E-06 47.6 4.0 35 93-127 91-130 (311)
493 PRK10436 hypothetical protein; 91.9 0.16 3.5E-06 50.8 3.8 34 81-114 210-244 (462)
494 COG0529 CysC Adenylylsulfate k 91.9 0.15 3.2E-06 43.7 3.0 39 85-123 18-61 (197)
495 COG0194 Gmk Guanylate kinase [ 91.9 0.13 2.9E-06 44.4 2.7 32 91-123 7-38 (191)
496 PRK03846 adenylylsulfate kinas 91.8 0.14 3E-06 45.1 3.0 31 91-121 27-60 (198)
497 PRK14738 gmk guanylate kinase; 91.8 0.069 1.5E-06 47.4 1.0 22 90-111 15-36 (206)
498 PRK13764 ATPase; Provisional 91.8 0.096 2.1E-06 53.9 2.1 28 86-113 255-282 (602)
499 cd02022 DPCK Dephospho-coenzym 91.8 0.11 2.4E-06 44.9 2.3 29 92-123 3-31 (179)
500 PF08477 Miro: Miro-like prote 91.8 0.065 1.4E-06 42.5 0.8 21 92-112 3-23 (119)
No 1
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=5.2e-68 Score=476.58 Aligned_cols=231 Identities=60% Similarity=1.011 Sum_probs=191.3
Q ss_pred ccccccCCccceeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhh
Q psy6129 57 YQNEYLGCTERLVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKG 136 (383)
Q Consensus 57 YgyEy~g~~~~lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g 136 (383)
|||||+|+.+|+|+||+|||||.++.+|++.+.++.+.||+|||||||+|+||+++|+++++|||++.++++.++|+++|
T Consensus 1 YgyEY~G~~~rlv~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G 80 (231)
T PF12774_consen 1 YGYEYLGNSPRLVITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKG 80 (231)
T ss_dssp -------S-------HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHH
T ss_pred CCccccCCCCCceechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc
Q psy6129 137 LAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF 216 (383)
Q Consensus 137 ~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f 216 (383)
++++|+|+||||||+++.++||++++++..|+++++++...+.+ .|+.|+++|++++|+||||+|.|+.+||++||++|
T Consensus 81 ~~~~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF 159 (231)
T PF12774_consen 81 LAQSGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF 159 (231)
T ss_dssp HHHHT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE
T ss_pred HhhcCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEeeccccCCcccCCHhHHHHh
Confidence 99999999999999999999999999999999999999888887 79999999999999999999999999999999999
Q ss_pred cccccCCCCHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhcchhhccCC
Q psy6129 217 RTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLGAAKRVNS 288 (383)
Q Consensus 217 r~v~~~~Pd~~~i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~~~~~~~~~ 288 (383)
|||+|..||.+.|+|++|.+.||.+++.||+|++.+|+++++++|+|.|||||||++|+|+..|+.+||..|
T Consensus 160 Rpvam~~PD~~~I~ei~L~s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~kr~~p 231 (231)
T PF12774_consen 160 RPVAMMVPDLSLIAEILLLSQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLKRGDP 231 (231)
T ss_dssp EEEE--S--HHHHHHHHHHCCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHHT---
T ss_pred heeEEeCCCHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765
No 2
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.93 E-value=9.8e-25 Score=203.23 Aligned_cols=240 Identities=16% Similarity=0.227 Sum_probs=189.1
Q ss_pred ceeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHH-HHHH---H--------
Q psy6129 67 RLVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRG-LGRI---Y-------- 134 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~-l~~~---l-------- 134 (383)
.++..|.+.+ .++.++..+.+.++.||+|||||++++.+|+.+|.+++.++|+++++..+ +|+. +
T Consensus 46 ~y~f~~~~~~---~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~ 122 (327)
T TIGR01650 46 AYLFDKATTK---AICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITE 122 (327)
T ss_pred CccCCHHHHH---HHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeE
Confidence 4666666554 35566777888999999999999999999999999999999999999977 4431 1
Q ss_pred --hh----hhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHh-cCceeEecCCcEEEecCCeeEEEeeCC-C-----
Q psy6129 135 --KG----LAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKE-KKKSFVFTDGDSIEMCPEFGIFITMNP-G----- 201 (383)
Q Consensus 135 --~g----~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~-~~~~~~~~~~~~i~~~~~~~if~T~np-~----- 201 (383)
.| +++.|.|+++||+|++++++++.+- .+.+ ++.......++.|+.||+|++|+|+|| +
T Consensus 123 f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~--------~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~ 194 (327)
T TIGR01650 123 FRDGILPWALQHNVALCFDEYDAGRPDVMFVIQ--------RVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTT 194 (327)
T ss_pred EecCcchhHHhCCeEEEechhhccCHHHHHHHH--------HHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCC
Confidence 23 3588999999999999999987653 2223 333333345788999999999999999 4
Q ss_pred --CCCCCcchHHHHHhccc-cccCCCCHHHHHHHHHhh-cCCCc--hHHHHHHHHHHHHHHHHhc-cCCCCCccChhhhH
Q psy6129 202 --YAGRKELPENLKIQFRT-VAMMVPDRQIIIRVKLAS-CGFLE--NITLARKFYTLYKLCEEQL-TKQVHYDFGLRNIL 274 (383)
Q Consensus 202 --~~g~~~lp~~l~~~fr~-v~~~~Pd~~~i~ei~l~~-~gf~~--~~~la~ki~~~~~~~~~~l-s~~~hy~f~lR~l~ 274 (383)
|.|++++|+++++||.. +.+.+|+.+...+|+... .++.. ++.+.++++.+...+++.+ ........+.|.+.
T Consensus 195 G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li 274 (327)
T TIGR01650 195 GLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVI 274 (327)
T ss_pred cceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHH
Confidence 89999999999999975 589999999999998754 34432 4678999999999998765 34556677899998
Q ss_pred HHHHhcchhhccCCCChHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhCCC
Q psy6129 275 SVLRSLGAAKRVNSRDTESTIVMRVLRDMNLSKLIDEDEPLFISLVADLFPN 326 (383)
Q Consensus 275 ~vi~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~l~~~d~~~f~~li~~~Fp~ 326 (383)
+|.+.+.... + -+..|++..+..+...++.+.+.++..++|+.
T Consensus 275 ~w~~~~~~f~--~-------~~~~a~~~~~~n~~~~~er~~~~e~~q~~f~~ 317 (327)
T TIGR01650 275 TWAENAEIFD--H-------DIALAFRLTFLNKCDELERPTVAEFFQRAFGE 317 (327)
T ss_pred HHHHHHHhhC--c-------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCC
Confidence 8887543221 1 26788888888888888899999999999974
No 3
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.93 E-value=2.2e-24 Score=199.26 Aligned_cols=202 Identities=22% Similarity=0.229 Sum_probs=164.8
Q ss_pred eeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH-HHHH------------
Q psy6129 68 LVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL-GRIY------------ 134 (383)
Q Consensus 68 lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l-~~~l------------ 134 (383)
+|.||...+....+..++..+.+.++.||||||||++++++|+.+|.+++.++|++.++.+++ +...
T Consensus 1 ~~~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~ 80 (262)
T TIGR02640 1 FIETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFI 80 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999887764 2210
Q ss_pred ---------------hh----hhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEec----CCcEEEecCC
Q psy6129 135 ---------------KG----LAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFT----DGDSIEMCPE 191 (383)
Q Consensus 135 ---------------~g----~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~----~~~~i~~~~~ 191 (383)
.| ++..|.|+++||+|++++++.+.+.+. +.++ .+... .++.++.||+
T Consensus 81 ~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~-------Le~~--~~~i~~~~~~~~~i~~~~~ 151 (262)
T TIGR02640 81 HNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSV-------FEEG--VLELPGKRGTSRYVDVHPE 151 (262)
T ss_pred HHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHH-------hcCC--eEEccCCCCCCceEecCCC
Confidence 12 456789999999999999988776332 2232 22221 2467889999
Q ss_pred eeEEEeeCC-CCCCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccCh
Q psy6129 192 FGIFITMNP-GYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGL 270 (383)
Q Consensus 192 ~~if~T~np-~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~l 270 (383)
|++|+|+|| .|.|+.++|++|+++|..+.+.+||.+...+|+... +..+..++++++.+++.+++ ...+...|.
T Consensus 152 frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~--~~~~~~~~~~iv~~~~~~R~---~~~~~~~~~ 226 (262)
T TIGR02640 152 FRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAK--TDVAEDSAATIVRLVREFRA---SGDEITSGL 226 (262)
T ss_pred CEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHh---hCCccCCcH
Confidence 999999998 589999999999999999999999999999887654 44567899999999999882 345667788
Q ss_pred hhhHHHHHhcchh
Q psy6129 271 RNILSVLRSLGAA 283 (383)
Q Consensus 271 R~l~~vi~~~~~~ 283 (383)
|....+.+.+...
T Consensus 227 r~~i~~~~~~~~~ 239 (262)
T TIGR02640 227 RASLMIAEVATQQ 239 (262)
T ss_pred HHHHHHHHHHHHc
Confidence 9888887766544
No 4
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.93 E-value=8.1e-25 Score=227.09 Aligned_cols=298 Identities=18% Similarity=0.242 Sum_probs=207.9
Q ss_pred CccceeechhhHHHHHHHHHHHH-ccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHH-HHHH--------
Q psy6129 64 CTERLVITPLTDRCYITLAQALT-MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRG-LGRI-------- 133 (383)
Q Consensus 64 ~~~~lv~Tp~t~r~~~~l~~al~-~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~-l~~~-------- 133 (383)
.+..+|+||-.++.+..++.|-. .+.|.++.||+.+|||+.++.+|+..|+.++.+|-+++|+.+. +|.+
T Consensus 863 eq~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~l 942 (4600)
T COG5271 863 EQEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSL 942 (4600)
T ss_pred hcceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCce
Confidence 34569999999998888886655 5566677899999999999999999999999999999999876 6544
Q ss_pred ------HhhhhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC--CCCCC
Q psy6129 134 ------YKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP--GYAGR 205 (383)
Q Consensus 134 ------l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np--~~~g~ 205 (383)
+.+|.+.|.|+++||.|.+|.++|.++ .+.+.+++..|+.+..+.|+.||+|++|+|.|| +|+||
T Consensus 943 sFkEGvLVeAlR~GyWIVLDELNLApTDVLEaL-------NRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGR 1015 (4600)
T COG5271 943 SFKEGVLVEALRRGYWIVLDELNLAPTDVLEAL-------NRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGR 1015 (4600)
T ss_pred eeehhHHHHHHhcCcEEEeeccccCcHHHHHHH-------HHhhccccceecCCcceeeccCCCeeEEeecCCCccccch
Confidence 456889999999999999999999876 455567788888877888999999999999998 79999
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhcc-----CCCCCccChhhhHHHHHhc
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLT-----KQVHYDFGLRNILSVLRSL 280 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls-----~~~hy~f~lR~l~~vi~~~ 280 (383)
+.|..+||+||-.+.+.--....+-+|+ ..+-+-|+..|+||+.+|+.++..-+ .|..-.-+||++ ++.|
T Consensus 1016 K~LSrAFRNRFlE~hFddipedEle~IL--h~rc~iapSyakKiVeVyr~Ls~rRs~~rifeqknsfaTLRDL---FrWa 1090 (4600)
T COG5271 1016 KGLSRAFRNRFLEMHFDDIPEDELEEIL--HGRCEIAPSYAKKIVEVYRGLSSRRSINRIFEQKNSFATLRDL---FRWA 1090 (4600)
T ss_pred HHHHHHHHhhhHhhhcccCcHHHHHHHH--hccCccCHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHH---HHHh
Confidence 9999999999988877544444444443 45667789999999999987553322 122222235554 4444
Q ss_pred chhhccCC--CChHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHHHH-cCCccCHHHH
Q psy6129 281 GAAKRVNS--RDTESTIVMRVLRDMNLSKLIDEDEPLFISLVADLFPNQALEKTAYPALEGAIQEQCEA-AGLIFHPPWV 357 (383)
Q Consensus 281 ~~~~~~~~--~~~e~~~~~~a~~~~~~~~l~~~d~~~f~~li~~~Fp~~~~~~~~~~~~~~~i~~~~~~-~~l~~~~~~i 357 (383)
++...... ...-...+++-.| ..+|.-...+.++++|........-|+.++. ..+++ ...+.++.+.
T Consensus 1091 ~R~avgy~qla~~GymllaER~R-------~~~dkv~V~~v~ekvmkvk~d~d~~y~smed---~slkel~~v~wt~~m~ 1160 (4600)
T COG5271 1091 GRIAVGYDQLAFLGYMLLAERQR-------ELEDKVRVGQVFEKVMKVKSDEDYKYDSMED---ISLKELSKVVWTEPMC 1160 (4600)
T ss_pred ccccchHHHHHHhhHHHHHHHhc-------CHHhhhhHHHHHHHHHhhhhcchhhhhhHhh---hhHHhhhhcccccchh
Confidence 32111100 0001111222222 2345545566666666422111222323331 12222 2345666677
Q ss_pred HHHHHHHHHHhccccEEEECCCCCCC
Q psy6129 358 LKLIQLYETQRVRHGIMTLGPTGAVT 383 (383)
Q Consensus 358 ~kv~~l~~~l~~~~gviLvG~~GsGK 383 (383)
.--.-+.+++.....|+|||.+||||
T Consensus 1161 rl~~lv~~Cl~~kepvlLVgetgcgk 1186 (4600)
T COG5271 1161 RLERLVGKCLVTKEPVLLVGETGCGK 1186 (4600)
T ss_pred hhhhHHHHhhcccCceEEEeecCcch
Confidence 76677778888899999999999998
No 5
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.93 E-value=4.8e-24 Score=221.44 Aligned_cols=320 Identities=19% Similarity=0.259 Sum_probs=224.8
Q ss_pred EEEccceeeccccccCCccceeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH
Q psy6129 48 INITDVTFTYQNEYLGCTERLVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY 127 (383)
Q Consensus 48 v~~~~~~~~YgyEy~g~~~~lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~ 127 (383)
...++..+||+-|-..++.--..||.|--...-++.|+.-++|.+|.|.||+|||+++.+||+..|..++.+|.|++|+.
T Consensus 1503 ~f~g~f~iP~~~~~~S~Ssf~l~spTT~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL 1582 (4600)
T COG5271 1503 MFGGDFVIPYLVEHHSSSSFDLESPTTTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDL 1582 (4600)
T ss_pred eeccccccccccccccCccccccCCchHHhHHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchH
Confidence 45678899999999888888888999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH-HHHH---------------hhhhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCC
Q psy6129 128 RGL-GRIY---------------KGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPE 191 (383)
Q Consensus 128 ~~l-~~~l---------------~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 191 (383)
-++ |..+ .-+++.|.|+.+||+|.++..+|..+ ...+..++..|+.+-...+++||+
T Consensus 1583 ~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLaSQSVlEGL-------NacLDhR~eayIPEld~~f~~Hpn 1655 (4600)
T COG5271 1583 CDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLASQSVLEGL-------NACLDHRREAYIPELDKTFDVHPN 1655 (4600)
T ss_pred HHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhhHHHHHHHH-------HHHHhhccccccccccceeeccCC
Confidence 874 3332 23688999999999998888877654 233445556777656679999999
Q ss_pred eeEEEeeCCC--CCCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHhccC------
Q psy6129 192 FGIFITMNPG--YAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLE-NITLARKFYTLYKLCEEQLTK------ 262 (383)
Q Consensus 192 ~~if~T~np~--~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~-~~~la~ki~~~~~~~~~~ls~------ 262 (383)
|++|+|.||- ..||+.||.+|.+||..|.|+.-....++.|. ..-|.+ .+..-.||+.|...+.++..+
T Consensus 1656 frVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~~Ia--~~~yp~v~~d~~~kiik~ms~lqd~i~k~~~~g~ 1733 (4600)
T COG5271 1656 FRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDITHIA--NKMYPQVNEDWRLKIIKFMSRLQDNIEKDISFGS 1733 (4600)
T ss_pred eeeeeecCchhcCCCcccCCHHHhhhhheEEecccccchHHHHH--HhhCCccChHHHHHHHHHHHHHHHhhhhhhcccC
Confidence 9999999994 45899999999999999998765555555543 222332 356677888887766655442
Q ss_pred -CCCCccChhhhHHHHHhcchhh---ccCCCChHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhCCCCCCCCCCh----
Q psy6129 263 -QVHYDFGLRNILSVLRSLGAAK---RVNSRDTESTIVMRVLRDMNLSKLIDEDEPLFISLVADLFPNQALEKTAY---- 334 (383)
Q Consensus 263 -~~hy~f~lR~l~~vi~~~~~~~---~~~~~~~e~~~~~~a~~~~~~~~l~~~d~~~f~~li~~~Fp~~~~~~~~~---- 334 (383)
.+.+.|++|+-.+++......- -..+.+--+.++.+.+|. -+|...--.+++++|..+.-...-+
T Consensus 1734 ~gsPwefnlrdTLRwl~llNq~~~~edvd~~dfid~~V~~r~rt-------v~dr~rt~~l~~evfg~~~~r~~~f~ls~ 1806 (4600)
T COG5271 1734 FGSPWEFNLRDTLRWLILLNQVGTLEDVDTSDFIDESVVRRMRT-------VEDRVRTCELFKEVFGDYEPRTIGFSLSS 1806 (4600)
T ss_pred CCCCeEEehHHHHHHHHHhhccCccccCCHHHHHHHHHHHHhhh-------HhhhhHHHHHHHHHhcccCcccccccchh
Confidence 4578899999877777532211 111122234445555543 2444444567778887443211111
Q ss_pred --hHHHHHHHHHHHH------cCCccCHHHHHHHHHHHHHHhccccEEEECCCCCCC
Q psy6129 335 --PALEGAIQEQCEA------AGLIFHPPWVLKLIQLYETQRVRHGIMTLGPTGAVT 383 (383)
Q Consensus 335 --~~~~~~i~~~~~~------~~l~~~~~~i~kv~~l~~~l~~~~gviLvG~~GsGK 383 (383)
..+...+.-...+ .++.+-...+.-.-.+.++++.+...+|||++|+||
T Consensus 1807 ~~~kv~~sv~vr~~err~~l~~~~~~l~sql~vlEsV~~cIn~nwPlIlvG~t~~GK 1863 (4600)
T COG5271 1807 QCFKVGHSVTVRMKERRPRLDDSFVLLHSQLQVLESVMRCINMNWPLILVGDTGVGK 1863 (4600)
T ss_pred hHhhcCceEEEeccccCCCcccchhhhhhhhHHHHHHHHHHhcCCCEEEEcCCCCch
Confidence 0000000000000 112233344445556777888999999999999998
No 6
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.92 E-value=7.4e-25 Score=202.54 Aligned_cols=231 Identities=21% Similarity=0.239 Sum_probs=161.2
Q ss_pred cceeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCc---EEEEeCCCCCCHHHHHHHHhhhh----
Q psy6129 66 ERLVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKY---VVVFNCSDQMDYRGLGRIYKGLA---- 138 (383)
Q Consensus 66 ~~lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~---~~~~~c~~~~~~~~l~~~l~g~~---- 138 (383)
.-+|+|..|.|....+-..+..+.+++++||+|||||.+++++-+.+... ...++|+..|+++.+.+++.+..
T Consensus 11 ~~~VpT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~ 90 (272)
T PF12775_consen 11 EILVPTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRR 90 (272)
T ss_dssp --T---HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECT
T ss_pred eEEeCcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCC
Confidence 46899999999999999999999999999999999999998866655432 35789999999998888775421
Q ss_pred --------hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchH
Q psy6129 139 --------QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPE 210 (383)
Q Consensus 139 --------~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~ 210 (383)
.....+++||+|++.++. +.+|++.++++++.+.++.|...+.++.. -.++.++++|||+ +|++.+++
T Consensus 91 ~~~~gP~~~k~lv~fiDDlN~p~~d~--ygtq~~iElLRQ~i~~~g~yd~~~~~~~~-i~~i~~vaa~~p~-~Gr~~is~ 166 (272)
T PF12775_consen 91 GRVYGPPGGKKLVLFIDDLNMPQPDK--YGTQPPIELLRQLIDYGGFYDRKKLEWKS-IEDIQFVAAMNPT-GGRNPISP 166 (272)
T ss_dssp TEEEEEESSSEEEEEEETTT-S---T--TS--HHHHHHHHHHHCSEEECTTTTEEEE-ECSEEEEEEESST-TT--SHHH
T ss_pred CCCCCCCCCcEEEEEecccCCCCCCC--CCCcCHHHHHHHHHHhcCcccCCCcEEEE-EeeeEEEEecCCC-CCCCCCCh
Confidence 112355679999999888 88999999999999998776543334444 4679999999995 48899999
Q ss_pred HHHHhccccccCCCCHHHHHHH-------HHhhcCCCc-----hHHHHHHHHHHHHHHHHhccC---CCCCccChhhhHH
Q psy6129 211 NLKIQFRTVAMMVPDRQIIIRV-------KLASCGFLE-----NITLARKFYTLYKLCEEQLTK---QVHYDFGLRNILS 275 (383)
Q Consensus 211 ~l~~~fr~v~~~~Pd~~~i~ei-------~l~~~gf~~-----~~~la~ki~~~~~~~~~~ls~---~~hy~f~lR~l~~ 275 (383)
+|.++|+.+++..|+.+.+..| .+...+|.. ...+++..+.+|+.+++.+.+ +.||.|+||++.+
T Consensus 167 R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsr 246 (272)
T PF12775_consen 167 RFLRHFNILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSR 246 (272)
T ss_dssp HHHTTEEEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHH
T ss_pred HHhhheEEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHH
Confidence 9999999999999995544333 333456753 367788889999999988753 6899999999999
Q ss_pred HHHhcchhhccCCCChHHHHHHHHHHH
Q psy6129 276 VLRSLGAAKRVNSRDTESTIVMRVLRD 302 (383)
Q Consensus 276 vi~~~~~~~~~~~~~~e~~~~~~a~~~ 302 (383)
|++..-....+... ....+++.|.+
T Consensus 247 v~qGil~~~~~~~~--~~~~l~rLW~H 271 (272)
T PF12775_consen 247 VFQGILLASPESIK--TKESLLRLWVH 271 (272)
T ss_dssp HHHHHHHHHCTSSS---SHHHHHHHHH
T ss_pred HHHHHHhcChhhcC--CHHHheEeecC
Confidence 99976433222222 22336676653
No 7
>PHA02244 ATPase-like protein
Probab=99.79 E-value=1.1e-17 Score=157.77 Aligned_cols=186 Identities=17% Similarity=0.206 Sum_probs=140.7
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHH-----------hhhhh
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIY-----------KGLAQ 139 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l-----------~g~~~ 139 (383)
.|.+...+..+..++..+.+++|.||+|||||++++++|+.+|.|++.+++. ++...+.... .-+..
T Consensus 102 sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~~ 179 (383)
T PHA02244 102 NPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAFK 179 (383)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHhh
Confidence 4455566677788899999999999999999999999999999999999853 2222221111 11357
Q ss_pred cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC---C----CCCCCcchHHH
Q psy6129 140 SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP---G----YAGRKELPENL 212 (383)
Q Consensus 140 ~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np---~----~~g~~~lp~~l 212 (383)
.|.|+++||+++++++++..+.. +.+.+ .+.. .|+.+..|++|++++|+|| + |.|++.+++++
T Consensus 180 ~GgvLiLDEId~a~p~vq~~L~~--------lLd~r-~l~l-~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~Al 249 (383)
T PHA02244 180 KGGLFFIDEIDASIPEALIIINS--------AIANK-FFDF-ADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGAT 249 (383)
T ss_pred cCCEEEEeCcCcCCHHHHHHHHH--------HhccC-eEEe-cCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHH
Confidence 89999999999999998775532 22332 3444 5778999999999999999 2 45889999999
Q ss_pred HHhccccccCCCCHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhcc-CCCCCccChhhhHHHHHh
Q psy6129 213 KIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLT-KQVHYDFGLRNILSVLRS 279 (383)
Q Consensus 213 ~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls-~~~hy~f~lR~l~~vi~~ 279 (383)
++||..|.+.+|+ +...++. . -+++++.+...++..+. ....+.||+|.+..+-+.
T Consensus 250 lDRFv~I~~dyp~-~~E~~i~--~--------~~~~lv~~a~~lR~~~~~~~l~~~~StR~li~~a~~ 306 (383)
T PHA02244 250 LDRFAPIEFDYDE-KIEHLIS--N--------GDEDLVNFVALLRHEMAEKGLDHVFSMRAIIHGKKF 306 (383)
T ss_pred HhhcEEeeCCCCc-HHHHHHh--h--------hHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Confidence 9999999999998 4433332 1 15688899988888654 356778999988776664
No 8
>KOG3595|consensus
Probab=99.76 E-value=2.9e-17 Score=181.46 Aligned_cols=313 Identities=20% Similarity=0.221 Sum_probs=227.4
Q ss_pred cceeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh-CCcEEEEeCCCCCCHHHHHHHHhhhh------
Q psy6129 66 ERLVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL-AKYVVVFNCSDQMDYRGLGRIYKGLA------ 138 (383)
Q Consensus 66 ~~lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l-g~~~~~~~c~~~~~~~~l~~~l~g~~------ 138 (383)
.-+|.|-+|.|.-..+...+..+++.+++||+|+|||.++....... ...++.+|++..++++..+.++..-+
T Consensus 105 ~~~v~t~dt~r~~~~~~~~~~~~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~~~~~k~~~~ 184 (1395)
T KOG3595|consen 105 DILVPTIDTVRYDRLLKLLLAHGKPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIESKLDKRRSG 184 (1395)
T ss_pred ceecCccceeeHHHHHHHHHHhCCeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHHHHHHHhccc
Confidence 66888999999988888888888999999999999999997655554 34555699999999998888774321
Q ss_pred ----hcCc--eEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHH
Q psy6129 139 ----QSGS--WGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENL 212 (383)
Q Consensus 139 ----~~g~--w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l 212 (383)
..|. .+++||+|++..+. +.+|....+++++.+....+....+.++.+ -++.++.+|||...||..+|++|
T Consensus 185 ~~~~~~~~~~~~f~ddinmp~~~~--yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i-~~i~~~~a~~~~~~gr~~i~~r~ 261 (1395)
T KOG3595|consen 185 NYGPPLGKKLVLFVDDINMPALDK--YGDQPPIELLRQMLEHGGFYDRKKSEWVEI-ENVQLVGAMNPPGGGRNDITERF 261 (1395)
T ss_pred CCCCCCCceeEEEEeccCCchhhh--cCCccHHHHHHHHHHhceeecccccceeEE-eeeEEEeecCCCCCccCcccHHH
Confidence 1222 34679999877777 888999999999999887776655455554 68999999999888999999999
Q ss_pred HHhccccccCCCCHHHHHHHHH--hhcCCC-------chHHHHHHHHHHHHHHHHhccC---CCCCccChhhhHHHHHhc
Q psy6129 213 KIQFRTVAMMVPDRQIIIRVKL--ASCGFL-------ENITLARKFYTLYKLCEEQLTK---QVHYDFGLRNILSVLRSL 280 (383)
Q Consensus 213 ~~~fr~v~~~~Pd~~~i~ei~l--~~~gf~-------~~~~la~ki~~~~~~~~~~ls~---~~hy~f~lR~l~~vi~~~ 280 (383)
+++|..+++..|+.....+|.. ...+|. ....++.+.+.+|..+.+.+.+ +.||.|+||++.++++..
T Consensus 262 ~r~f~~~~~~~~~~~sl~~if~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i 341 (1395)
T KOG3595|consen 262 LRHFLIVSLNYPSQESLTQIFNTILTGHLRFAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGI 341 (1395)
T ss_pred HHHeeeEeeCCCChhhHHHHHHHHHhcccCccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeeh
Confidence 9999999999999887777652 233322 2356777888899988888763 579999999999999875
Q ss_pred chhhccCCCChHHHHHHHHH----HHhhcCCCCCC-ChHHHHHHHH----hhCCCCC-----------C-------CCCC
Q psy6129 281 GAAKRVNSRDTESTIVMRVL----RDMNLSKLIDE-DEPLFISLVA----DLFPNQA-----------L-------EKTA 333 (383)
Q Consensus 281 ~~~~~~~~~~~e~~~~~~a~----~~~~~~~l~~~-d~~~f~~li~----~~Fp~~~-----------~-------~~~~ 333 (383)
.... ... ......+.+.| .+++.++++.+ |.++|.+.+. ..|+... . +..+
T Consensus 342 ~~~~-~~~-~~~~~~l~~~~~~e~~rv~~drlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 419 (1395)
T KOG3595|consen 342 LLAV-SEA-LLTLEDLIRLWVHEAIRVFADRLVDDEDRQWFDKKLQEVLLKLFEADSLQMPLLYGDFRSESHKIYEEVLS 419 (1395)
T ss_pred cccC-cHh-hccHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHhhhhhhcCCceeeecccccccccCchHh
Confidence 5433 111 11111233333 24677788654 7667666543 3454431 0 0011
Q ss_pred hhHHHHH----HHHHH----HHcCCccCHHHHHHHHHHHHHHhcccc-EEEECCCCCCC
Q psy6129 334 YPALEGA----IQEQC----EAAGLIFHPPWVLKLIQLYETQRVRHG-IMTLGPTGAVT 383 (383)
Q Consensus 334 ~~~~~~~----i~~~~----~~~~l~~~~~~i~kv~~l~~~l~~~~g-viLvG~~GsGK 383 (383)
+..+... +.... ..|.++.+.+.+.|+.++.+++++.+| .+++|.+||||
T Consensus 420 ~~~l~~~~~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gk 478 (1395)
T KOG3595|consen 420 VELLRGVLEAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGK 478 (1395)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCc
Confidence 1122211 12222 127788999999999999999999888 89999999998
No 9
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.72 E-value=1.1e-17 Score=139.86 Aligned_cols=118 Identities=32% Similarity=0.436 Sum_probs=86.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHH----------hh----hhhcCceEEecccccCChhh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIY----------KG----LAQSGSWGCFDEFNRIELPV 156 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l----------~g----~~~~g~w~~~dein~l~~~~ 156 (383)
++|+||+|||||++++.+|+.++.+++.++|+..++..++..-. .| +...|.|+++||+|++++++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v 81 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPEV 81 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHHH
Confidence 57899999999999999999999999999999999999864322 11 35689999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecC------CeeEEEeeCCCCCCCCcchHHHHHhc
Q psy6129 157 LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCP------EFGIFITMNPGYAGRKELPENLKIQF 216 (383)
Q Consensus 157 ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~------~~~if~T~np~~~g~~~lp~~l~~~f 216 (383)
++.+-+. + +.+.......++.++.++ ++++|+|+||...++.+++++|++||
T Consensus 82 ~~~L~~l-------l-~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 82 LESLLSL-------L-EERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp HHTTHHH-------H-SSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred HHHHHHH-------H-hhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 8765332 2 433333333345555554 59999999997788999999999998
No 10
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.71 E-value=1.8e-17 Score=132.96 Aligned_cols=116 Identities=23% Similarity=0.219 Sum_probs=75.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHH------------HhhhhhcCceEEecccccCChhhHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRI------------YKGLAQSGSWGCFDEFNRIELPVLS 158 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~------------l~g~~~~g~w~~~dein~l~~~~ls 158 (383)
++|.|+||+|||++++++|+.+|..+..++|++++.++++.-. -+|-.. ..++++||+||+++.+.|
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-~~ill~DEiNrappktQs 80 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-TNILLADEINRAPPKTQS 80 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--SSEEEEETGGGS-HHHHH
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-hceeeecccccCCHHHHH
Confidence 3678999999999999999999999999999999999986422 123233 347889999999999999
Q ss_pred HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHHhcc
Q psy6129 159 VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKIQFR 217 (383)
Q Consensus 159 ~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~~fr 217 (383)
.+ +.++.++ .+.. +|.+.++.+.|.+++|+|| ++.|+.+||+++++||-
T Consensus 81 Al-------Leam~Er--~Vt~-~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 81 AL-------LEAMEER--QVTI-DGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp HH-------HHHHHHS--EEEE-TTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred HH-------HHHHHcC--eEEe-CCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 76 5566666 3444 7999999999999999999 78899999999999983
No 11
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.70 E-value=1.4e-16 Score=152.24 Aligned_cols=176 Identities=26% Similarity=0.277 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH-HHHH--------------hhhh
Q psy6129 74 TDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL-GRIY--------------KGLA 138 (383)
Q Consensus 74 t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l-~~~l--------------~g~~ 138 (383)
.+.....+..|+..+.+.++.||||||||++++.+|+.+|.+++.++|+++++++++ |... .|-.
T Consensus 29 ~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl 108 (329)
T COG0714 29 DEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPL 108 (329)
T ss_pred cHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCc
Confidence 556667777888899999999999999999999999999999999999999999884 3221 1212
Q ss_pred hcC--ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcE-EEecCCeeEEEeeCC-CCCCCCcchHHHHH
Q psy6129 139 QSG--SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDS-IEMCPEFGIFITMNP-GYAGRKELPENLKI 214 (383)
Q Consensus 139 ~~g--~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~if~T~np-~~~g~~~lp~~l~~ 214 (383)
..+ ..+++||||+.++++.+.+ +.++.++. +.. .+.. +++++.|.+++|.|| .|.|.++||+++++
T Consensus 109 ~~~~~~ill~DEInra~p~~q~aL-------l~~l~e~~--vtv-~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld 178 (329)
T COG0714 109 FAAVRVILLLDEINRAPPEVQNAL-------LEALEERQ--VTV-PGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD 178 (329)
T ss_pred ccccceEEEEeccccCCHHHHHHH-------HHHHhCcE--EEE-CCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh
Confidence 222 3889999999999999876 44555543 333 4556 999999999999999 68899999999999
Q ss_pred hc-cccccCCCCHHHHHHHHHhhcCC-Cc--hHHHHHHHHHHHHHHHHh
Q psy6129 215 QF-RTVAMMVPDRQIIIRVKLASCGF-LE--NITLARKFYTLYKLCEEQ 259 (383)
Q Consensus 215 ~f-r~v~~~~Pd~~~i~ei~l~~~gf-~~--~~~la~ki~~~~~~~~~~ 259 (383)
|| -.+.+.+|+......+.+...+- .. .....+.++......+.+
T Consensus 179 Rf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 227 (329)
T COG0714 179 RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQ 227 (329)
T ss_pred hEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHH
Confidence 99 88899999666555555544433 32 345566666655555433
No 12
>KOG1808|consensus
Probab=99.69 E-value=4.4e-16 Score=169.51 Aligned_cols=200 Identities=21% Similarity=0.302 Sum_probs=160.4
Q ss_pred EEccceeeccccccCCccceeechhhHHHHHHHHHHHHcc-CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH
Q psy6129 49 NITDVTFTYQNEYLGCTERLVITPLTDRCYITLAQALTMS-MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY 127 (383)
Q Consensus 49 ~~~~~~~~YgyEy~g~~~~lv~Tp~t~r~~~~l~~al~~~-~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~ 127 (383)
++.++.++-|-|-.-+....|+||-..+....+.+|...+ .+.+|.||+|+|||++++.+|+..|+.++.+|-+++||.
T Consensus 400 ~~~~~~i~~gs~~~~~~~~~i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~ 479 (1856)
T KOG1808|consen 400 RFEGYWIPSGSELTSEATHYIITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDL 479 (1856)
T ss_pred ccceeecCCCCccccccceeeccHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchH
Confidence 4456666777777777788999999999999999999887 566789999999999999999999999999999999999
Q ss_pred HH-HHHHH--------------hhhhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCe
Q psy6129 128 RG-LGRIY--------------KGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEF 192 (383)
Q Consensus 128 ~~-l~~~l--------------~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 192 (383)
.. ++++. .+++..|.|+++||+|+.+.++|.++. +.+.+++..+..+..+.++.||+|
T Consensus 480 qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLn-------rllddnRel~ipe~~rlv~~h~~f 552 (1856)
T KOG1808|consen 480 QEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALN-------RLLDDNRELFIPETQRLVKAHPEF 552 (1856)
T ss_pred HHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHH-------hhhhhhccccccccceeeccCcch
Confidence 87 66443 457899999999999999999998763 334455667777677899999999
Q ss_pred eEEEeeCCC--CCCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q psy6129 193 GIFITMNPG--YAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCE 257 (383)
Q Consensus 193 ~if~T~np~--~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~~~~la~ki~~~~~~~~ 257 (383)
.+|+|-||. |+|++.+..+|+++|-.+-+..-..+.+.++. ......++..+++++..|+..+
T Consensus 553 ~lfatqn~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~--~~~~~i~~~~~~k~~~~~~~L~ 617 (1856)
T KOG1808|consen 553 MLFATQNPPGTYGGRKILSRALRNRFIELHFDDIGEEELEEIL--EHRCGIPPSYEKKMVQVMRELS 617 (1856)
T ss_pred hhhhhccCccccchhhhhhhcccccchhhhhhhcCchhhhhhh--cccccCCchHHHHHHHHhhhhh
Confidence 999999995 99999999999999977655322222222232 2333445778999999987543
No 13
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.66 E-value=4.8e-16 Score=162.25 Aligned_cols=313 Identities=15% Similarity=0.071 Sum_probs=211.4
Q ss_pred ceeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHH-HHHHHHhCCcEEEEeCCCCCCHHHHHHHHh---------h
Q psy6129 67 RLVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETV-KDMGKTLAKYVVVFNCSDQMDYRGLGRIYK---------G 136 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i-~~la~~lg~~~~~~~c~~~~~~~~l~~~l~---------g 136 (383)
-+++|-+|-+.--..--++....+.+++||||+|||.+. -++-..+-..+.-+|++..++...+.+.+. |
T Consensus 1473 vVipt~dt~~~~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg 1552 (3164)
T COG5245 1473 VVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTG 1552 (3164)
T ss_pred eecccccchhHHHHHHHHHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCC
Confidence 356677788887777889999999999999999999976 467777778889999999888776655552 2
Q ss_pred h---h----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcc
Q psy6129 137 L---A----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKEL 208 (383)
Q Consensus 137 ~---~----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~l 208 (383)
. + .....++.||||++-.. .++++.+.-.++.+.++++.+.....+|+.+ .+.-+..++|| ...||.+.
T Consensus 1553 ~~~l~PK~~vK~lVLFcDeInLp~~~--~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-~~i~l~Gacnp~td~gRv~~ 1629 (3164)
T COG5245 1553 VVRLYPKPVVKDLVLFCDEINLPYGF--EYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-CGIILYGACNPGTDEGRVKY 1629 (3164)
T ss_pred eEEEccCcchhheEEEeeccCCcccc--ccCCCceEEeeHHHHHhcccccchhhhHhhh-cceEEEccCCCCCCcccCcc
Confidence 1 1 22346778999954222 2444433334566677766665555677776 66778889999 47899999
Q ss_pred hHHHHHhccccccCCCCHHHHHHHH---Hhhc-----CCCc-hHHHHHHHHHHHHHHHHhcc--CCCCCccChhhhHHHH
Q psy6129 209 PENLKIQFRTVAMMVPDRQIIIRVK---LASC-----GFLE-NITLARKFYTLYKLCEEQLT--KQVHYDFGLRNILSVL 277 (383)
Q Consensus 209 p~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~-----gf~~-~~~la~ki~~~~~~~~~~ls--~~~hy~f~lR~l~~vi 277 (383)
|++|.++--.+.+.+|+...+.+|+ +... .|.. ....++.-+.+|+.|++..+ -|.||.|.+|++.+++
T Consensus 1630 ~eRf~r~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~l 1709 (3164)
T COG5245 1630 YERFIRKPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSL 1709 (3164)
T ss_pred HHHHhcCceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHH
Confidence 9999999888899999976555443 3321 1211 24456677889999998865 5899999999999998
Q ss_pred HhcchhhccCCCC----hHHHHHHHHHHHhhcCCCCCC-ChHHHHHHHH----hhCCCCCCCC-----------------
Q psy6129 278 RSLGAAKRVNSRD----TESTIVMRVLRDMNLSKLIDE-DEPLFISLVA----DLFPNQALEK----------------- 331 (383)
Q Consensus 278 ~~~~~~~~~~~~~----~e~~~~~~a~~~~~~~~l~~~-d~~~f~~li~----~~Fp~~~~~~----------------- 331 (383)
+.........++. ....+...|||. +.+||+.. +...+...+. .-||+.....
T Consensus 1710 r~i~~yaeT~~~t~~~slI~~wy~ea~r~-~~dRLV~qkE~st~~q~ly~~~~~~~~e~~~g~i~e~~I~fS~Il~~g~~ 1788 (3164)
T COG5245 1710 RAIFGYAETRIDTPDVSLIIDWYCEAIRE-KIDRLVQQKESSTSRQDLYDFGLRAIREMIAGHIGEAEITFSMILFFGMA 1788 (3164)
T ss_pred HHHHhHHhcCCCCCcHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHhccHH
Confidence 8765433222221 233345556654 45566532 3334444333 3355432111
Q ss_pred -CChhHHHHHH----HHHHHH---cCCccCHHHHHHHHHHHHHHhcccc-EEEECCCCCCC
Q psy6129 332 -TAYPALEGAI----QEQCEA---AGLIFHPPWVLKLIQLYETQRVRHG-IMTLGPTGAVT 383 (383)
Q Consensus 332 -~~~~~~~~~i----~~~~~~---~~l~~~~~~i~kv~~l~~~l~~~~g-viLvG~~GsGK 383 (383)
.+..++...+ +..+.+ ..++.+++.+.|+++.+|.+++.+| .+|.|..|.||
T Consensus 1789 ~l~k~dl~~fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~ 1849 (3164)
T COG5245 1789 CLLKKDLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGA 1849 (3164)
T ss_pred HHhhhhHHHHHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhh
Confidence 1122333333 334422 4578899999999999999999888 78999999886
No 14
>KOG0733|consensus
Probab=99.49 E-value=6.1e-12 Score=123.23 Aligned_cols=276 Identities=17% Similarity=0.198 Sum_probs=148.5
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhhh-hcCceEEecccccCChhhHHH
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGLA-QSGSWGCFDEFNRIELPVLSV 159 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls~ 159 (383)
.-.|+++.||||||||.+++++|..+|.|++.++..+-. +.+.+..+|..+. .+.+.+++||||-+.+.--..
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a 301 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA 301 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH
Confidence 356778999999999999999999999999999877633 4566888888775 467888999999876543221
Q ss_pred HHH----HHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHh--c-cccccCCCCHH---HH
Q psy6129 160 AAQ----QVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQ--F-RTVAMMVPDRQ---II 229 (383)
Q Consensus 160 l~~----~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~--f-r~v~~~~Pd~~---~i 229 (383)
-.+ .+..++..+.+-. . .-..| ...-+++++|-. ..|.++||+. | |.|.+..||.. .|
T Consensus 302 qreMErRiVaQLlt~mD~l~-~-~~~~g------~~VlVIgATnRP----DslDpaLRRaGRFdrEI~l~vP~e~aR~~I 369 (802)
T KOG0733|consen 302 QREMERRIVAQLLTSMDELS-N-EKTKG------DPVLVIGATNRP----DSLDPALRRAGRFDREICLGVPSETAREEI 369 (802)
T ss_pred HHHHHHHHHHHHHHhhhccc-c-cccCC------CCeEEEecCCCC----cccCHHHhccccccceeeecCCchHHHHHH
Confidence 111 1112222222211 0 00012 335677787743 3678888864 4 78999999954 45
Q ss_pred HHHHHh---hcCCCchHHHHHH--------HHHH-----HHHHHHhccCC-----------CCCccChhhhHHHHHhcch
Q psy6129 230 IRVKLA---SCGFLENITLARK--------FYTL-----YKLCEEQLTKQ-----------VHYDFGLRNILSVLRSLGA 282 (383)
Q Consensus 230 ~ei~l~---~~gf~~~~~la~k--------i~~~-----~~~~~~~ls~~-----------~hy~f~lR~l~~vi~~~~~ 282 (383)
++++.. ..|--+-++||+. +..+ +..++..|..+ .|-.=+.-+-++++..-..
T Consensus 370 L~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~ 449 (802)
T KOG0733|consen 370 LRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSN 449 (802)
T ss_pred HHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCc
Confidence 555432 1111112223321 1110 00111111100 0100001111222221000
Q ss_pred hhccCCCChHHHHHHHHHHHhhcCCCCCCC-------hHHHHHHHHhhCCCC------CCCCCChhHH--HHHHHHHHHH
Q psy6129 283 AKRVNSRDTESTIVMRVLRDMNLSKLIDED-------EPLFISLVADLFPNQ------ALEKTAYPAL--EGAIQEQCEA 347 (383)
Q Consensus 283 ~~~~~~~~~e~~~~~~a~~~~~~~~l~~~d-------~~~f~~li~~~Fp~~------~~~~~~~~~~--~~~i~~~~~~ 347 (383)
. ....+-+.++.++|+..--| +..+. ..-|.+.+..+-|.. .+|.+.|+++ .+.|+.++..
T Consensus 450 ~---~~~~~ld~v~~~~i~~~~d~-~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~ 525 (802)
T KOG0733|consen 450 A---ERPLELDRVVQDAILNNPDP-LSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNM 525 (802)
T ss_pred c---cccccHHHHHHHHHHhCCCC-cChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHH
Confidence 0 00112233444555432111 22221 233677777777754 3678889876 3556665554
Q ss_pred cCCccCHHHHHHHHHHHHHHhc--cccEEEECCCCCCC
Q psy6129 348 AGLIFHPPWVLKLIQLYETQRV--RHGIMTLGPTGAVT 383 (383)
Q Consensus 348 ~~l~~~~~~i~kv~~l~~~l~~--~~gviLvG~~GsGK 383 (383)
.=+. ..|--.+|+.+.. ..||+|+|||||||
T Consensus 526 aI~~-----PiK~pd~~k~lGi~~PsGvLL~GPPGCGK 558 (802)
T KOG0733|consen 526 AILA-----PIKRPDLFKALGIDAPSGVLLCGPPGCGK 558 (802)
T ss_pred HHhh-----hccCHHHHHHhCCCCCCceEEeCCCCccH
Confidence 3222 2344467777754 68999999999998
No 15
>KOG0736|consensus
Probab=99.40 E-value=1.4e-11 Score=123.59 Aligned_cols=135 Identities=17% Similarity=0.273 Sum_probs=81.9
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhh-hhcCceEEecccccCChhhHHHHHHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGL-AQSGSWGCFDEFNRIELPVLSVAAQQV 164 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~-~~~g~w~~~dein~l~~~~ls~l~~~~ 164 (383)
+|.|++|||||+.++++|+.+|.+++.+.|.+-+ +...+..++.-+ +-..+.+|+-++|-+..+.-....-.+
T Consensus 435 LLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl 514 (953)
T KOG0736|consen 435 LLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARL 514 (953)
T ss_pred EEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHH
Confidence 4789999999999999999999999999998744 333355555444 345677887776654321100000001
Q ss_pred HHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc-ccccCCCCHHH---HHHHHHhhcC
Q psy6129 165 AVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR-TVAMMVPDRQI---IIRVKLASCG 238 (383)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr-~v~~~~Pd~~~---i~ei~l~~~g 238 (383)
...++.+.. ...+.+ -.+...+++|++. ...+|..++++|+ .+.+..|+.+. |.+.++...-
T Consensus 515 ~~~i~~~ls-~e~~~~-------~~~~~ivv~t~~s----~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 515 LKVIRHLLS-NEDFKF-------SCPPVIVVATTSS----IEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP 580 (953)
T ss_pred HHHHHHHHh-cccccC-------CCCceEEEEeccc----cccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc
Confidence 111111111 111111 1244567777763 4789999999996 67888888664 4555554433
No 16
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.36 E-value=6.2e-13 Score=139.59 Aligned_cols=287 Identities=9% Similarity=-0.007 Sum_probs=195.6
Q ss_pred cEEEEEccceeeccccccCCccceeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCC
Q psy6129 45 KTWINITDVTFTYQNEYLGCTERLVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQ 124 (383)
Q Consensus 45 ~~~v~~~~~~~~YgyEy~g~~~~lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~ 124 (383)
.+.+...+.-..|.|||.|-+.+++.||+-.-.+..+.-|++...+-. +|||||++.+.+.+.+||-+ +.
T Consensus 904 ~~~~~~s~y~~~~~f~~~~ip~~~~~~~~~~~~~~~l~~a~~~~~c~f----~~t~~s~~~~~~~~~~gri~------d~ 973 (3164)
T COG5245 904 RFIKVRSSYRSAEMFAKNTIPFFVFEHSMDTSQHQKLFEAVCDEVCRF----VDTENSRVYGMLVAGKGRIY------DG 973 (3164)
T ss_pred heEeechhhHHHHHHHhcCCChhheechhhhhhHHHHHHHHHHHHhee----cCCCCceeHHHHhcCCCeee------cC
Confidence 355666778888999999999999999998888999999998877433 78999999999999999932 67
Q ss_pred CCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCC
Q psy6129 125 MDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAG 204 (383)
Q Consensus 125 ~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g 204 (383)
+++. +|+..|..+.|+|+ +||+|+++..++..++.. ..+.+.++-....... --+.-...|...+++|.||
T Consensus 974 ~~~~--sri~~g~~~~~~~g-~~e~~~lde~~~~i~~~~-~~~~~~~~~~~~~~s~-~~e~~~~sp~t~v~~~in~---- 1044 (3164)
T COG5245 974 TEPR--SRIEAGPICEEERG-TEESALLDEISRTILVDE-YLNSDEFRMLEELNSA-VVEHGLKSPSTPVEMIINE---- 1044 (3164)
T ss_pred CChh--hhhhccceehhhcc-chhHHHHHHHHHHHhhhH-HhcchHHHHHHHHHHH-HHHcCCCCCCCceEEEecc----
Confidence 7777 89999999999999 999999999888554432 2222222111111000 0012234689999999998
Q ss_pred CCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhcchhh
Q psy6129 205 RKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLGAAK 284 (383)
Q Consensus 205 ~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~~~~~ 284 (383)
|+.+|+++++.||.+.+..| ...|.+.- +.|+.+|..|.+.+....+...||.| |.++.+++.+..+.
T Consensus 1045 r~~~~e~~~~a~~~f~~~~p-~g~i~~~~---------~sl~~~i~~f~~~~~~~~~~~~~~~f--~~~~~~l~~~~~~l 1112 (3164)
T COG5245 1045 RNIVLEIGRRALDMFLSNIP-FGAIKSRR---------ESLDREIGAFNNEVDGIAREEDELMF--YPMFKSLKAKHRML 1112 (3164)
T ss_pred hhhHHHHHHHHHHHHHhcCC-chhHHHHH---------HHHHHHHHHHHHHhhhhhcccchhhh--HHHHHHHhhcchHH
Confidence 78999999999999999999 77776652 67999999999988877777889988 88998888765443
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhCCCCCCCCCChhHH-HHH----HHHHHHHcCCccCHHHHHH
Q psy6129 285 RVNSRDTESTIVMRVLRDMNLSKLIDEDEPLFISLVADLFPNQALEKTAYPAL-EGA----IQEQCEAAGLIFHPPWVLK 359 (383)
Q Consensus 285 ~~~~~~~e~~~~~~a~~~~~~~~l~~~d~~~f~~li~~~Fp~~~~~~~~~~~~-~~~----i~~~~~~~~l~~~~~~i~k 359 (383)
.+... -+. -++.+ .-+|-+.+. +.+.+ |+|.. .++.+ ..+ ..+.-+..|+.+.+ |+
T Consensus 1113 ~e~~e-~~~-~i~~~---~~lp~i~dt----l~e~~-~~~da------~~~~~~~~s~~~~~~~s~q~sg~~~a~-f~-- 1173 (3164)
T COG5245 1113 EEKTE-YLN-KILSI---TGLPLISDT----LRERI-DTLDA------EWDSFCRISESLKKYESQQVSGLDVAQ-FV-- 1173 (3164)
T ss_pred HHhhH-HHH-HHHHH---hCCCchhHH----HHHHH-HHHhh------cCCchhHHHHHHHHHhhccccCccHHH-HH--
Confidence 22210 011 12221 114433221 22222 33321 12222 112 22333335555443 33
Q ss_pred HHHHHHHHhccccEEEECCCCCCC
Q psy6129 360 LIQLYETQRVRHGIMTLGPTGAVT 383 (383)
Q Consensus 360 v~~l~~~l~~~~gviLvG~~GsGK 383 (383)
..++.....+..+++|..|+||
T Consensus 1174 --~f~~~~~t~~~~~~~~~~~~~k 1195 (3164)
T COG5245 1174 --SFLRSVDTGAFHAEYFRVFLCK 1195 (3164)
T ss_pred --HHHHHhhhcHHHHHHHHHhhcc
Confidence 3777766666688899999987
No 17
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.36 E-value=1.7e-11 Score=119.08 Aligned_cols=180 Identities=17% Similarity=0.133 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCC-----cEEEEeCCCCCCHHHHH-H-----------------
Q psy6129 76 RCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAK-----YVVVFNCSDQMDYRGLG-R----------------- 132 (383)
Q Consensus 76 r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~-----~~~~~~c~~~~~~~~l~-~----------------- 132 (383)
..+..+..++..+...+++||||||||.+++.+|..++. ++..+.++...++.++. .
T Consensus 182 ~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~ 261 (459)
T PRK11331 182 TTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYN 261 (459)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHH
Confidence 345566777888888999999999999999999998853 34456777777776642 1
Q ss_pred HHhhhh---hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCcee--Ee--cCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 133 IYKGLA---QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSF--VF--TDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 133 ~l~g~~---~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~--~~--~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
++.-+. ..+.++++||+||...+. +.++.+..+-...+...... .+ .+++.+.+++|+.|++|||....+.
T Consensus 262 ~~~~A~~~p~~~~vliIDEINRani~k--iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 262 FCQQAKEQPEKKYVFIIDEINRANLSK--VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL 339 (459)
T ss_pred HHHHHHhcccCCcEEEEehhhccCHHH--hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccch
Confidence 111222 246899999999998765 34433322111000000011 11 1235688899999999999976666
Q ss_pred CcchHHHHHhccccccCC-CCHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHHHH
Q psy6129 206 KELPENLKIQFRTVAMMV-PDRQIIIRVKLASCGF--LENITLARKFYTLYKLCEE 258 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~-Pd~~~i~ei~l~~~gf--~~~~~la~ki~~~~~~~~~ 258 (383)
..++.+|++||..+.+.. .+...+.+.++ ..+- .....+++++..+-+.+++
T Consensus 340 ~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~-~~~~~~~~~~~l~~~l~~LN~~I~~ 394 (459)
T PRK11331 340 AVVDYALRRRFSFIDIEPGFDTPQFRNFLL-NKKAEPSFVESLCQKMNELNQEISK 394 (459)
T ss_pred hhccHHHHhhhheEEecCCCChHHHHHHHH-hcccCchhHHHHHHHHHHHHHHHHh
Confidence 689999999999988763 23333333332 2222 1235566677666666653
No 18
>KOG0730|consensus
Probab=99.32 E-value=9.5e-11 Score=116.25 Aligned_cols=235 Identities=20% Similarity=0.302 Sum_probs=138.2
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhhh--hcCceEEecccccCCh-----
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGLA--QSGSWGCFDEFNRIEL----- 154 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~~--~~g~w~~~dein~l~~----- 154 (383)
..+.+++||||||||.+++++|+..|-+++.+||++-+ +.+.+.+.+.-+. +.++.+++||++.+-+
T Consensus 218 prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~ 297 (693)
T KOG0730|consen 218 PRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA 297 (693)
T ss_pred CCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc
Confidence 45677899999999999999999999999999998633 3344667775542 3378999999997754
Q ss_pred -hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH-hc-cccccCCCCH---HH
Q psy6129 155 -PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI-QF-RTVAMMVPDR---QI 228 (383)
Q Consensus 155 -~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~-~f-r~v~~~~Pd~---~~ 228 (383)
.+.+.+..++..+++.+.. . ....++++.|. -..|.+++++ +| +.+.+..|+. ..
T Consensus 298 ~~~e~Rv~sqlltL~dg~~~--------~-------~~vivl~atnr----p~sld~alRRgRfd~ev~IgiP~~~~Rld 358 (693)
T KOG0730|consen 298 DDVESRVVSQLLTLLDGLKP--------D-------AKVIVLAATNR----PDSLDPALRRGRFDREVEIGIPGSDGRLD 358 (693)
T ss_pred chHHHHHHHHHHHHHhhCcC--------c-------CcEEEEEecCC----ccccChhhhcCCCcceeeecCCCchhHHH
Confidence 2345566666555543321 1 12234455553 2578899996 66 7888899994 45
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhcchhhccCCCChHHHHHHHHHHHhhcCCC
Q psy6129 229 IIRVKLASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLGAAKRVNSRDTESTIVMRVLRDMNLSKL 308 (383)
Q Consensus 229 i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~l 308 (383)
|++++....++.+...+- .+.. ..|- |-=.++...++.+ -..++++
T Consensus 359 Il~~l~k~~~~~~~~~l~----~iA~--------~thG-yvGaDL~~l~~ea---------------~~~~~r~------ 404 (693)
T KOG0730|consen 359 ILRVLTKKMNLLSDVDLE----DIAV--------STHG-YVGADLAALCREA---------------SLQATRR------ 404 (693)
T ss_pred HHHHHHHhcCCcchhhHH----HHHH--------Hccc-hhHHHHHHHHHHH---------------HHHHhhh------
Confidence 666666666555221111 0000 0110 1112333333322 1122222
Q ss_pred CCCChHHHHHHHHhhCCC------CCCCCCChhHH--HHHHHHHHHHcCCccCHHHHHHHHHHHHH--HhccccEEEECC
Q psy6129 309 IDEDEPLFISLVADLFPN------QALEKTAYPAL--EGAIQEQCEAAGLIFHPPWVLKLIQLYET--QRVRHGIMTLGP 378 (383)
Q Consensus 309 ~~~d~~~f~~li~~~Fp~------~~~~~~~~~~~--~~~i~~~~~~~~l~~~~~~i~kv~~l~~~--l~~~~gviLvG~ 378 (383)
+.+.|......+.|. ++.++.+|+++ .+.+++.+++.=. |-.|.-..|.- +...+||+++||
T Consensus 405 ---~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~-----~p~~~pe~F~r~Gi~ppkGVLlyGP 476 (693)
T KOG0730|consen 405 ---TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVE-----WPLKHPEKFARFGISPPKGVLLYGP 476 (693)
T ss_pred ---hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHh-----hhhhchHHHHHhcCCCCceEEEECC
Confidence 333455555555553 34567777776 3566666554211 12222222222 355789999999
Q ss_pred CCCCC
Q psy6129 379 TGAVT 383 (383)
Q Consensus 379 ~GsGK 383 (383)
|||||
T Consensus 477 PGC~K 481 (693)
T KOG0730|consen 477 PGCGK 481 (693)
T ss_pred CCcch
Confidence 99998
No 19
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.20 E-value=5.2e-10 Score=117.98 Aligned_cols=127 Identities=24% Similarity=0.281 Sum_probs=80.1
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhhh-cCceEEecccccCChhh----
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLAQ-SGSWGCFDEFNRIELPV---- 156 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~~-~g~w~~~dein~l~~~~---- 156 (383)
..+.+++||+|||||++++.+|+.++.+++.++|++..+ ...+..++.-+.. ..+.+++||++.+...-
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~ 291 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT 291 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc
Confidence 356778999999999999999999999999999875322 2235555554433 35789999998764321
Q ss_pred ---HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHH
Q psy6129 157 ---LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIII 230 (383)
Q Consensus 157 ---ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ 230 (383)
-..+..++ +..+.... . .....+++|+|+. ..+++.+++ +| +.+.+..||.+.-.
T Consensus 292 ~~~~~~~~~~L---l~~ld~l~------~------~~~vivI~atn~~----~~ld~al~r~gRfd~~i~i~~P~~~~R~ 352 (733)
T TIGR01243 292 GEVEKRVVAQL---LTLMDGLK------G------RGRVIVIGATNRP----DALDPALRRPGRFDREIVIRVPDKRARK 352 (733)
T ss_pred chHHHHHHHHH---HHHhhccc------c------CCCEEEEeecCCh----hhcCHHHhCchhccEEEEeCCcCHHHHH
Confidence 01111112 22111100 0 1234567777753 468888876 55 57788899977654
Q ss_pred HHH
Q psy6129 231 RVK 233 (383)
Q Consensus 231 ei~ 233 (383)
+++
T Consensus 353 ~Il 355 (733)
T TIGR01243 353 EIL 355 (733)
T ss_pred HHH
Confidence 444
No 20
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.18 E-value=3.7e-10 Score=118.89 Aligned_cols=132 Identities=13% Similarity=0.151 Sum_probs=85.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCCCCH--------HHHHHHHhhhhh-cCceEEecc
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQMDY--------RGLGRIYKGLAQ-SGSWGCFDE 148 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~~~~--------~~l~~~l~g~~~-~g~w~~~de 148 (383)
...++|+||||||||.+++.+|+.+ +..++.++++.-... +.+.+++.-+.. .+..+++||
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE 282 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE 282 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence 3456789999999999999999987 777888887654321 235555554433 356888999
Q ss_pred cccCChhhH-HHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHHhccccccCCCCH
Q psy6129 149 FNRIELPVL-SVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKIQFRTVAMMVPDR 226 (383)
Q Consensus 149 in~l~~~~l-s~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~~fr~v~~~~Pd~ 226 (383)
++++...-- +........++....+ .| .+.+++++|+ +|.-..+.+++|.++|.+|.+..|+.
T Consensus 283 ih~l~~~g~~~~~~~~~~~~L~~~l~--------~g-------~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~ 347 (731)
T TIGR02639 283 IHTIVGAGATSGGSMDASNLLKPALS--------SG-------KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSI 347 (731)
T ss_pred HHHHhccCCCCCccHHHHHHHHHHHh--------CC-------CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCH
Confidence 997642100 0000001111211111 12 3557788876 55444578999999999999999999
Q ss_pred HHHHHHHH
Q psy6129 227 QIIIRVKL 234 (383)
Q Consensus 227 ~~i~ei~l 234 (383)
+...+|+-
T Consensus 348 ~~~~~il~ 355 (731)
T TIGR02639 348 EETVKILK 355 (731)
T ss_pred HHHHHHHH
Confidence 88877763
No 21
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.15 E-value=6.9e-10 Score=115.86 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=77.8
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCCC---C-----HHHHHHHHhhhhh-cCceEEecc
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQM---D-----YRGLGRIYKGLAQ-SGSWGCFDE 148 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~~---~-----~~~l~~~l~g~~~-~g~w~~~de 148 (383)
...++|+||||||||.+++.+|... +..++..+.+.-. . ...+..++.-+.. .+..+++||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDE 286 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE 286 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEecc
Confidence 4567889999999999999999764 2233322221111 0 0112233333322 356888999
Q ss_pred cccCChhhH-HHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHHhccccccCCCCH
Q psy6129 149 FNRIELPVL-SVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKIQFRTVAMMVPDR 226 (383)
Q Consensus 149 in~l~~~~l-s~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~~fr~v~~~~Pd~ 226 (383)
++.+-..-- +.....+..++..+.++ ....+++++|+ +|...-+.+++|.+||.+|.+..|+.
T Consensus 287 Ih~L~g~g~~~~g~~d~~nlLkp~L~~---------------g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~ 351 (758)
T PRK11034 287 IHTIIGAGAASGGQVDAANLIKPLLSS---------------GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSI 351 (758)
T ss_pred HHHHhccCCCCCcHHHHHHHHHHHHhC---------------CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCH
Confidence 996621100 00011122223333222 22557777776 45444578999999999999999999
Q ss_pred HHHHHHHH
Q psy6129 227 QIIIRVKL 234 (383)
Q Consensus 227 ~~i~ei~l 234 (383)
+...+|+.
T Consensus 352 ~~~~~IL~ 359 (758)
T PRK11034 352 EETVQIIN 359 (758)
T ss_pred HHHHHHHH
Confidence 98877763
No 22
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.13 E-value=3.1e-10 Score=100.14 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=87.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAA 170 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~ 170 (383)
.+++||||+|||++++-+|+.+|.++..++...--...++..++..+ ..|.++++|||+|++..+..++ +.+
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l-~~~~ILFIDEIHRlnk~~qe~L-------lpa 124 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNL-KEGDILFIDEIHRLNKAQQEIL-------LPA 124 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT---TT-EEEECTCCC--HHHHHHH-------HHH
T ss_pred EEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhc-CCCcEEEEechhhccHHHHHHH-------HHH
Confidence 46799999999999999999999999988876544566777777654 5688999999999999886655 333
Q ss_pred HHhcCceeEecCC---cEEEec-CCeeEEEeeCCCCCCCCcchHHHHHhcccc-ccCCCCHHHHHHHHHhhcCC
Q psy6129 171 KKEKKKSFVFTDG---DSIEMC-PEFGIFITMNPGYAGRKELPENLKIQFRTV-AMMVPDRQIIIRVKLASCGF 239 (383)
Q Consensus 171 ~~~~~~~~~~~~~---~~i~~~-~~~~if~T~np~~~g~~~lp~~l~~~fr~v-~~~~Pd~~~i~ei~l~~~gf 239 (383)
+.+..-.+....| +.++++ |.|.++.+++-. .-|+.-|+++|..+ .+.+-+.+.+.+|...+.+.
T Consensus 125 mEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~----g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~ 194 (233)
T PF05496_consen 125 MEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA----GLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI 194 (233)
T ss_dssp HHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG----CCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC
T ss_pred hccCeEEEEeccccccceeeccCCCceEeeeeccc----cccchhHHhhcceecchhcCCHHHHHHHHHHHHHH
Confidence 4333211222122 455554 778888887642 46788899999887 58888888888887665433
No 23
>KOG1808|consensus
Probab=99.10 E-value=3.5e-10 Score=124.25 Aligned_cols=302 Identities=19% Similarity=0.238 Sum_probs=189.2
Q ss_pred eeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH-HH--------------
Q psy6129 68 LVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL-GR-------------- 132 (383)
Q Consensus 68 lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l-~~-------------- 132 (383)
+..|-...+.+..+...+..+-+++++|.+|+|||+.++.+|...|..+-++|-+...+.+.+ +.
T Consensus 45 fa~t~~~~~l~~~~~~~v~~~ep~ll~g~tgvgkt~~~Q~~a~~~g~~l~vv~~~~~~~~s~~l~g~k~v~~~~~~pl~~ 124 (1856)
T KOG1808|consen 45 FAFTRSVLTLLERIAVCVQHNEPLLLVGETGVGKTSVVQYLAVLLGFKLTVVNVSQQSDSSDLLGGYKPVNDYLSLPLSK 124 (1856)
T ss_pred ccccchHHHHHHHHHHHHhcCCccccccccCCCcchHhHhhhhccceeeeeeeecccCCCCcccccccchhheeecccch
Confidence 888999999999999999999999999999999999999999999999999988887764442 00
Q ss_pred ----HH------------------------------------------------------------------------hh
Q psy6129 133 ----IY------------------------------------------------------------------------KG 136 (383)
Q Consensus 133 ----~l------------------------------------------------------------------------~g 136 (383)
++ .|
T Consensus 125 ~~~~i~~~t~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~~~~~~f~~~~g 204 (1856)
T KOG1808|consen 125 PFEKIFNLTFLLKKNQKFIKNASRCLSSGRHKDLISLMIEICSKAELNPNPMKRAELEMRLQKIEQQLEKGEALFVFVPG 204 (1856)
T ss_pred HHHHHHHHHHHHHhhhccchhhHHHhhhhHHHHHHHHHHHHHHHHhcCcchhhccchhhHHHHHhhhhhhhhhhhhhchh
Confidence 00 11
Q ss_pred ----hhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEec--CCcEEEecCCeeEEEeeCC-CCCCCCcch
Q psy6129 137 ----LAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFT--DGDSIEMCPEFGIFITMNP-GYAGRKELP 209 (383)
Q Consensus 137 ----~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~--~~~~i~~~~~~~if~T~np-~~~g~~~lp 209 (383)
+...|.|..+||+|..+.+.+..+++.+.. ....... +-+.++.||++++|++||| +..|...+|
T Consensus 205 ~~~~~~~~g~w~lldeinla~~~~l~~i~~vl~~--------~~i~l~e~~d~~~l~~hp~f~~f~cmnp~td~gK~~l~ 276 (1856)
T KOG1808|consen 205 ALVETISNGEWLLLDEINLASAETLELISQVLGK--------CSILLSERGDYTPLKIHPNFRIFACMNPATDVGKRDLK 276 (1856)
T ss_pred hHHHHHhccchhhhhhhccchHHHHHHHHHhccC--------ceeeccccccccccCCCcchhhhhccCccchhhhhhcC
Confidence 246789999999999999998877665532 1111111 2246789999999999999 567899999
Q ss_pred HHHHHhccccccCCCCHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhccC--CCCCccChhhhHHHHHhcchhhccC
Q psy6129 210 ENLKIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLTK--QVHYDFGLRNILSVLRSLGAAKRVN 287 (383)
Q Consensus 210 ~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls~--~~hy~f~lR~l~~vi~~~~~~~~~~ 287 (383)
..++++|+.+++..+....-....-...-+.-..+....++.+|...+..... .....+++|++.+.++........
T Consensus 277 ~~~r~~~te~~v~~~~~~~~~~l~~~~~~~~i~~e~v~~~~e~~~~~k~~~~~dg~~~~~~s~r~l~raL~~v~~~~~~- 355 (1856)
T KOG1808|consen 277 PGKRNRFTEFSVHTSLEDADLSLSVVDKYIAISSEPVRNIVELYLSAKSLSLVDGNQRPLYSIRTLCRALRIVLDSLPA- 355 (1856)
T ss_pred cchhcceEEEEEechhhhhhhhhhhhccccccchhhHHhHHHHhhhccccccccccccchhhhhhHHHHHHHHHHhhhh-
Confidence 99999999999877764432222111111111222333366666544433211 111224788888777754321111
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhCC-CCCCCCCChhHHHHH-HH---HHHHH-cCCccCHHHHHHHH
Q psy6129 288 SRDTESTIVMRVLRDMNLSKLIDEDEPLFISLVADLFP-NQALEKTAYPALEGA-IQ---EQCEA-AGLIFHPPWVLKLI 361 (383)
Q Consensus 288 ~~~~e~~~~~~a~~~~~~~~l~~~d~~~f~~li~~~Fp-~~~~~~~~~~~~~~~-i~---~~~~~-~~l~~~~~~i~kv~ 361 (383)
.-..-++.+++-.+...|-.+..+....++...|- ..+.|... .+... |. +..++ -..++++....-..
T Consensus 356 ---~~~~slyE~~~~sflt~le~~s~~~~~~l~~~~~~~~~q~P~~~--~~~~~~i~~gs~~~~~~~~~i~T~~vq~~la 430 (1856)
T KOG1808|consen 356 ---EVDRSLYEAFCMSFLTQLEGESHKRLVKLIQRALLITKQVPASP--RFEGYWIPSGSELTSEATHYIITPRVQKNLA 430 (1856)
T ss_pred ---hhhcchHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcccCCCCc--ccceeecCCCCccccccceeeccHHHHHHHH
Confidence 22334666666666666655555555555554332 11233222 11110 00 00111 11344455444445
Q ss_pred HHHHHHhccc-cEEEECCCCCCC
Q psy6129 362 QLYETQRVRH-GIMTLGPTGAVT 383 (383)
Q Consensus 362 ~l~~~l~~~~-gviLvG~~GsGK 383 (383)
.+-++..+++ .++|.||+||||
T Consensus 431 ~~~~a~~~~~~pillqG~tssGK 453 (1856)
T KOG1808|consen 431 DLARAISSGKFPILLQGPTSSGK 453 (1856)
T ss_pred HHHHHHhcCCCCeEEecCcCcCc
Confidence 5555555553 599999999998
No 24
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.08 E-value=7.6e-09 Score=99.02 Aligned_cols=134 Identities=17% Similarity=0.208 Sum_probs=91.5
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLA 169 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~ 169 (383)
..+++||+|||||++++.+|+.+|..+...+.+......++..++..+ ..|..+++||+++++......+ ..
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~vl~IDEi~~l~~~~~e~l-------~~ 124 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNL-EEGDVLFIDEIHRLSPVVEEIL-------YP 124 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhc-ccCCEEEEecHhhcchHHHHHH-------HH
Confidence 356789999999999999999999988777776555556666666543 4688999999999987654332 22
Q ss_pred HHHhcCceeEecCC---cEEEe-cCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHHHHHHHHHh
Q psy6129 170 AKKEKKKSFVFTDG---DSIEM-CPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQIIIRVKLA 235 (383)
Q Consensus 170 ~~~~~~~~~~~~~~---~~i~~-~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei~l~ 235 (383)
.+.+........++ ..+.. .|.+.+++++|+. ..+++.++++| ..+.+..|+.+.+.+++-.
T Consensus 125 ~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~----~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~ 191 (328)
T PRK00080 125 AMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA----GLLTSPLRDRFGIVQRLEFYTVEELEKIVKR 191 (328)
T ss_pred HHHhcceeeeeccCccccceeecCCCceEEeecCCc----ccCCHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 23333222222111 12221 2557788887753 36888899999 4678888998887777643
No 25
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.1e-09 Score=107.90 Aligned_cols=128 Identities=21% Similarity=0.320 Sum_probs=92.8
Q ss_pred HccCCCC--CcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH------------HHHHhhhhhcC---ceEEecc
Q psy6129 86 TMSMGGS--PCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL------------GRIYKGLAQSG---SWGCFDE 148 (383)
Q Consensus 86 ~~~~~~~--l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l------------~~~l~g~~~~g---~w~~~de 148 (383)
..-+|++ |+||||+|||++.+++|+++||.++.+.-..--|.+.+ ||++.|+.+.| -.+.+||
T Consensus 346 ~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDE 425 (782)
T COG0466 346 KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDE 425 (782)
T ss_pred ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeec
Confidence 3345554 57999999999999999999999999999998888877 67777765554 5788999
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEe--c-CCeeEEEeeCCCCCCCCcchHHHHHhccccccC
Q psy6129 149 FNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEM--C-PEFGIFITMNPGYAGRKELPENLKIQFRTVAMM 222 (383)
Q Consensus 149 in~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~--~-~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~ 222 (383)
||++..+..-.=+..+.++++.-+.. .| ..+.+.+ + .+..|++|.|. -..+|.-|++|.-.+.+.
T Consensus 426 IDKm~ss~rGDPaSALLEVLDPEQN~--~F---~DhYLev~yDLS~VmFiaTANs----l~tIP~PLlDRMEiI~ls 493 (782)
T COG0466 426 IDKMGSSFRGDPASALLEVLDPEQNN--TF---SDHYLEVPYDLSKVMFIATANS----LDTIPAPLLDRMEVIRLS 493 (782)
T ss_pred hhhccCCCCCChHHHHHhhcCHhhcC--ch---hhccccCccchhheEEEeecCc----cccCChHHhcceeeeeec
Confidence 99998775444444555666554433 22 1122221 1 45788889884 356999999999888763
No 26
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.01 E-value=1.4e-09 Score=89.29 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=74.9
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhhhc--CceEEecccccCChhh---HHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLAQS--GSWGCFDEFNRIELPV---LSVA 160 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~~~--g~w~~~dein~l~~~~---ls~l 160 (383)
+++||+|||||++++.+|+.+|.+++.++|++..+ ...+..++.-+... .+.+++||++.+.... .+..
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~ 81 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSF 81 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHH
T ss_pred EEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccccccc
Confidence 57899999999999999999999999999998652 22244555544444 4889999999887765 1111
Q ss_pred HH-HHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHH-Hhcc
Q psy6129 161 AQ-QVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLK-IQFR 217 (383)
Q Consensus 161 ~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~-~~fr 217 (383)
.. .+..++..+...... ...+.+++|+|. ...+++.++ ++|.
T Consensus 82 ~~~~~~~L~~~l~~~~~~-----------~~~~~vI~ttn~----~~~i~~~l~~~rf~ 125 (132)
T PF00004_consen 82 EQRLLNQLLSLLDNPSSK-----------NSRVIVIATTNS----PDKIDPALLRSRFD 125 (132)
T ss_dssp HHHHHHHHHHHHHTTTTT-----------SSSEEEEEEESS----GGGSCHHHHSTTSE
T ss_pred cccccceeeecccccccc-----------cccceeEEeeCC----hhhCCHhHHhCCCc
Confidence 11 112223333222110 345788899984 468999999 8874
No 27
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.00 E-value=8.4e-10 Score=95.19 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=70.6
Q ss_pred CCcCCCCCCccHHHHHHHHHhCC----cEEEEeCCCCCCHHH----HHHHHhh---h--hhcCceEEecccccCCh----
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAK----YVVVFNCSDQMDYRG----LGRIYKG---L--AQSGSWGCFDEFNRIEL---- 154 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~----~~~~~~c~~~~~~~~----l~~~l~g---~--~~~g~w~~~dein~l~~---- 154 (383)
++.||+|+|||++++.+|+.++. +++.++|++-.+..+ +.+.+.. . ...+..++||||+++.+
T Consensus 7 ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~~~~ 86 (171)
T PF07724_consen 7 LLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPSNSG 86 (171)
T ss_dssp EEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHTTTT
T ss_pred EEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccccccc
Confidence 57899999999999999999995 899999999888333 3333321 1 22344899999999999
Q ss_pred -------hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 155 -------PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 155 -------~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
.++..+.+.+ +.. .+....|..|.. .++-|++|.|-+
T Consensus 87 ~~~v~~~~V~~~LL~~l--------e~g-~~~d~~g~~vd~-~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 87 GADVSGEGVQNSLLQLL--------EGG-TLTDSYGRTVDT-SNIIFIMTSNFG 130 (171)
T ss_dssp CSHHHHHHHHHHHHHHH--------HHS-EEEETTCCEEEG-TTEEEEEEESSS
T ss_pred cchhhHHHHHHHHHHHh--------ccc-ceecccceEEEe-CCceEEEecccc
Confidence 6665543322 322 344345566665 678899999954
No 28
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.9e-09 Score=109.52 Aligned_cols=99 Identities=23% Similarity=0.366 Sum_probs=78.3
Q ss_pred CcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHh------h---------hh-hcC-ceEEecccccC
Q psy6129 93 PCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYK------G---------LA-QSG-SWGCFDEFNRI 152 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~------g---------~~-~~g-~w~~~dein~l 152 (383)
+.||+|+||||++++||..|. ..+++|++|+-+...+++|++- | +. ... +.+.||||.++
T Consensus 526 F~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 526 FLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred eeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc
Confidence 589999999999999999887 7899999999999999999872 1 12 222 47889999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 153 ELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 153 ~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
.++++..+-|-+ +.+ ......|++|.. .|+-|++|+|-|
T Consensus 606 HpdV~nilLQVl--------DdG-rLTD~~Gr~VdF-rNtiIImTSN~G 644 (786)
T COG0542 606 HPDVFNLLLQVL--------DDG-RLTDGQGRTVDF-RNTIIIMTSNAG 644 (786)
T ss_pred CHHHHHHHHHHh--------cCC-eeecCCCCEEec-ceeEEEEecccc
Confidence 999988765433 332 344446778877 678999999975
No 29
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.99 E-value=7.7e-09 Score=104.48 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=88.3
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEE----eCCCCCCHHHHHH-------HHhhh--hhcCceEEecccccCChhh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVF----NCSDQMDYRGLGR-------IYKGL--AQSGSWGCFDEFNRIELPV 156 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~----~c~~~~~~~~l~~-------~l~g~--~~~g~w~~~dein~l~~~~ 156 (383)
.++|+|+||||||.+++.+++...+..++. +|...+. ..+.. +-.|+ ...|+.+|+||+|+++++.
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~ 316 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSD 316 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEccCcceEEecCccEEecCCCEEEEechhhCCHHH
Confidence 467899999999999999999987654332 2221111 11111 11343 3357899999999999998
Q ss_pred HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC---C------CCcchHHHHHhccc--cccCCCC
Q psy6129 157 LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA---G------RKELPENLKIQFRT--VAMMVPD 225 (383)
Q Consensus 157 ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~---g------~~~lp~~l~~~fr~--v~~~~Pd 225 (383)
.+.+.+ ++.++.-.+ ...|....++..+++++|+||.++ + .-.||+.+.++|-- +..+.||
T Consensus 317 q~~L~e-------~me~~~i~i-~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~ 388 (509)
T smart00350 317 RTAIHE-------AMEQQTISI-AKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVD 388 (509)
T ss_pred HHHHHH-------HHhcCEEEE-EeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCC
Confidence 776633 333322111 235777788899999999999542 1 12899999999943 3447888
Q ss_pred HHHHHH
Q psy6129 226 RQIIIR 231 (383)
Q Consensus 226 ~~~i~e 231 (383)
.+.-.+
T Consensus 389 ~~~d~~ 394 (509)
T smart00350 389 EERDRE 394 (509)
T ss_pred hHHHHH
Confidence 765433
No 30
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.99 E-value=2.8e-09 Score=112.93 Aligned_cols=135 Identities=19% Similarity=0.232 Sum_probs=86.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHH------------HHHhh---hhhcCceEEecccccCChh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLG------------RIYKG---LAQSGSWGCFDEFNRIELP 155 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~------------~~l~g---~~~~g~w~~~dein~l~~~ 155 (383)
.+++||||||||++++.+|+.++.+++.++++...+...+. ++..+ +.....++++|||+++..+
T Consensus 350 lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~ 429 (775)
T TIGR00763 350 LCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSS 429 (775)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCc
Confidence 45789999999999999999999999999998766655431 22222 2234458899999999764
Q ss_pred hHHHHHHHHHHHHHHHHhcCceeEe-cCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHH
Q psy6129 156 VLSVAAQQVAVVLAAKKEKKKSFVF-TDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRV 232 (383)
Q Consensus 156 ~ls~l~~~~~~i~~~~~~~~~~~~~-~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei 232 (383)
.-......+..+++.... ..+.. ..+..+.. .++.|++|+|+. ..+|+.|++||..+.+..|+.+...+|
T Consensus 430 ~~~~~~~aLl~~ld~~~~--~~f~d~~~~~~~d~-s~v~~I~TtN~~----~~i~~~L~~R~~vi~~~~~~~~e~~~I 500 (775)
T TIGR00763 430 FRGDPASALLEVLDPEQN--NAFSDHYLDVPFDL-SKVIFIATANSI----DTIPRPLLDRMEVIELSGYTEEEKLEI 500 (775)
T ss_pred cCCCHHHHHHHhcCHHhc--CccccccCCceecc-CCEEEEEecCCc----hhCCHHHhCCeeEEecCCCCHHHHHHH
Confidence 221111222222222111 12211 01223333 356788999963 589999999999998888886554444
No 31
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.97 E-value=4.1e-09 Score=103.39 Aligned_cols=146 Identities=12% Similarity=0.023 Sum_probs=89.8
Q ss_pred HHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCC--cEEEEeCCCCCCHHHHHHH--------------Hhhhhhc
Q psy6129 77 CYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAK--YVVVFNCSDQMDYRGLGRI--------------YKGLAQS 140 (383)
Q Consensus 77 ~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~--~~~~~~c~~~~~~~~l~~~--------------l~g~~~~ 140 (383)
....+..++..+..+++.||||||||++++.+++..+. ++...+|.-.+..+-+|.. ..|....
T Consensus 28 vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~ 107 (498)
T PRK13531 28 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPE 107 (498)
T ss_pred HHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccc
Confidence 34556667778888899999999999999999998864 4555555433333223321 2232212
Q ss_pred CceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc-cc
Q psy6129 141 GSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR-TV 219 (383)
Q Consensus 141 g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr-~v 219 (383)
-..+++|||+++++.+.+.+ +.++.++ .+.. +|+..+++..+-+.+| ||= ....+.-+++..+|- .+
T Consensus 108 A~lLfLDEI~rasp~~QsaL-------Leam~Er--~~t~-g~~~~~lp~rfiv~AT-N~L-PE~g~~leAL~DRFliri 175 (498)
T PRK13531 108 AEIVFLDEIWKAGPAILNTL-------LTAINER--RFRN-GAHEEKIPMRLLVTAS-NEL-PEADSSLEALYDRMLIRL 175 (498)
T ss_pred ccEEeecccccCCHHHHHHH-------HHHHHhC--eEec-CCeEEeCCCcEEEEEC-CCC-cccCCchHHhHhhEEEEE
Confidence 23688999999999999876 4455554 3443 6777777654444444 630 001122247888882 45
Q ss_pred ccCCCC-HHHHHHHHH
Q psy6129 220 AMMVPD-RQIIIRVKL 234 (383)
Q Consensus 220 ~~~~Pd-~~~i~ei~l 234 (383)
.+.+|+ .+...+++.
T Consensus 176 ~vp~l~~~~~e~~lL~ 191 (498)
T PRK13531 176 WLDKVQDKANFRSMLT 191 (498)
T ss_pred ECCCCCchHHHHHHHH
Confidence 667776 344455543
No 32
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.96 E-value=9.7e-09 Score=109.48 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=81.0
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCCC---C-----HHHHHHHHhhhhhc-CceEEecc
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQM---D-----YRGLGRIYKGLAQS-GSWGCFDE 148 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~~---~-----~~~l~~~l~g~~~~-g~w~~~de 148 (383)
...++|+||||||||.+++.+|..+ +.+++.++.+.-. . .+.+.+++..+... +..+++||
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDE 279 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDE 279 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4467799999999999999999976 3677888765322 2 12355566555433 46789999
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHHhccccccCCCCHH
Q psy6129 149 FNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKIQFRTVAMMVPDRQ 227 (383)
Q Consensus 149 in~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~~fr~v~~~~Pd~~ 227 (383)
++.+-..--+........++....++ -.+++++++++ +|....+..+.|.++|.++.+..|+.+
T Consensus 280 ih~l~~~g~~~g~~~~a~lLkp~l~r---------------g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~ 344 (821)
T CHL00095 280 VHTLIGAGAAEGAIDAANILKPALAR---------------GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVE 344 (821)
T ss_pred HHHHhcCCCCCCcccHHHHhHHHHhC---------------CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHH
Confidence 98553210000000111122211111 23567777776 554434678899999999999999977
Q ss_pred HHHHHH
Q psy6129 228 IIIRVK 233 (383)
Q Consensus 228 ~i~ei~ 233 (383)
....++
T Consensus 345 e~~aIL 350 (821)
T CHL00095 345 ETIEIL 350 (821)
T ss_pred HHHHHH
Confidence 655543
No 33
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.95 E-value=2.1e-08 Score=95.72 Aligned_cols=159 Identities=23% Similarity=0.270 Sum_probs=105.2
Q ss_pred HHHHccCCCC-CcCCCCCCccHHHHHHHHHhCCcEEE----EeCCCCCCHHH----H-----------------------
Q psy6129 83 QALTMSMGGS-PCGPAGTGKTETVKDMGKTLAKYVVV----FNCSDQMDYRG----L----------------------- 130 (383)
Q Consensus 83 ~al~~~~~~~-l~Gp~GtGKT~~i~~la~~lg~~~~~----~~c~~~~~~~~----l----------------------- 130 (383)
.++....++. +.|+.|||||+++++||..|.-.-.+ |||++.-..+. .
T Consensus 32 ~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl 111 (423)
T COG1239 32 NAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPL 111 (423)
T ss_pred hhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCC
Confidence 3566565554 56999999999999999999755443 45554332100 1
Q ss_pred -------------HHHHh--------h--hhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEE
Q psy6129 131 -------------GRIYK--------G--LAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIE 187 (383)
Q Consensus 131 -------------~~~l~--------g--~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~ 187 (383)
.+.++ | +..++..+++||+|.++..+...+ ++++.++.+.+.. +|-.|+
T Consensus 112 ~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~L-------Ld~aaeG~n~ver-eGisi~ 183 (423)
T COG1239 112 GATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDAL-------LDVAAEGVNDVER-EGISIR 183 (423)
T ss_pred ccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHH-------HHHHHhCCceeee-Cceeec
Confidence 11111 2 235678999999999988876554 5666666555554 788888
Q ss_pred ecCCeeEEEeeCCCCCCCCcchHHHHHhcc-ccccCCC-CHHHHHHHHHhhcCCC-chHHHHHHHHHH
Q psy6129 188 MCPEFGIFITMNPGYAGRKELPENLKIQFR-TVAMMVP-DRQIIIRVKLASCGFL-ENITLARKFYTL 252 (383)
Q Consensus 188 ~~~~~~if~T~np~~~g~~~lp~~l~~~fr-~v~~~~P-d~~~i~ei~l~~~gf~-~~~~la~ki~~~ 252 (383)
..-+|.+++||||+ ..+|-+.|+++|- .|....| |.+.-++|.....-|. ++..+.+++...
T Consensus 184 hpa~fvligTmNPE---eGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~ 248 (423)
T COG1239 184 HPARFLLIGTMNPE---EGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADA 248 (423)
T ss_pred cCccEEEEeecCcc---ccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 88899999999997 5689999999994 4555443 4555666665555553 234444444443
No 34
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.92 E-value=4.1e-09 Score=105.01 Aligned_cols=128 Identities=17% Similarity=0.126 Sum_probs=85.0
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhh-hhcCceEEecccccCChhh---
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGL-AQSGSWGCFDEFNRIELPV--- 156 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~-~~~g~w~~~dein~l~~~~--- 156 (383)
..+|.+|+||||||||.+++++|+.+|.+++.++|+.-. +...+.+++.-+ ....+.+++||++.+-...
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~ 337 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK 337 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC
Confidence 345678999999999999999999999999999986532 334466777644 3467889999999653210
Q ss_pred -HH-HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHH
Q psy6129 157 -LS-VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIR 231 (383)
Q Consensus 157 -ls-~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~e 231 (383)
-+ .....+..++..+.+. .....+++|+|.. ..||+.+++ +| +.+.+..||.+.-.+
T Consensus 338 ~d~~~~~rvl~~lL~~l~~~--------------~~~V~vIaTTN~~----~~Ld~allR~GRFD~~i~v~lP~~~eR~~ 399 (489)
T CHL00195 338 GDSGTTNRVLATFITWLSEK--------------KSPVFVVATANNI----DLLPLEILRKGRFDEIFFLDLPSLEEREK 399 (489)
T ss_pred CCchHHHHHHHHHHHHHhcC--------------CCceEEEEecCCh----hhCCHHHhCCCcCCeEEEeCCcCHHHHHH
Confidence 01 1111112222222211 1345678888843 589999986 77 577899999765444
Q ss_pred H
Q psy6129 232 V 232 (383)
Q Consensus 232 i 232 (383)
|
T Consensus 400 I 400 (489)
T CHL00195 400 I 400 (489)
T ss_pred H
Confidence 3
No 35
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.92 E-value=6.3e-09 Score=108.79 Aligned_cols=100 Identities=22% Similarity=0.367 Sum_probs=71.3
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHh-----------h----h-h-hcCceEEecccccCCh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYK-----------G----L-A-QSGSWGCFDEFNRIEL 154 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~-----------g----~-~-~~g~w~~~dein~l~~ 154 (383)
+++||+|||||++++.+|+.++.+++.++|++.++...+.+++. | + . ...+.++||||+++++
T Consensus 492 Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~ 571 (758)
T PRK11034 492 LFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP 571 (758)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH
Confidence 57899999999999999999999999999998776555555431 1 1 1 2346889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 155 PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 155 ~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
++...+.+.+ +.+ .+....|+.+.. .++-+++|+|.+
T Consensus 572 ~v~~~LLq~l--------d~G-~ltd~~g~~vd~-rn~iiI~TsN~g 608 (758)
T PRK11034 572 DVFNLLLQVM--------DNG-TLTDNNGRKADF-RNVVLVMTTNAG 608 (758)
T ss_pred HHHHHHHHHH--------hcC-eeecCCCceecC-CCcEEEEeCCcC
Confidence 8876654333 222 222234555544 466799999954
No 36
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.90 E-value=2.3e-08 Score=97.51 Aligned_cols=166 Identities=18% Similarity=0.238 Sum_probs=99.4
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhh-hhcCceEEecccccCChhh----
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGL-AQSGSWGCFDEFNRIELPV---- 156 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~-~~~g~w~~~dein~l~~~~---- 156 (383)
..+.+|+||||||||++++++|+.++.+++.+.+++..+ ...+..++.-+ ....+.+++||++.+...-
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~ 258 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ 258 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc
Confidence 456778999999999999999999999998888754321 12233444433 2456789999999663210
Q ss_pred ---HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHH--
Q psy6129 157 ---LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQI-- 228 (383)
Q Consensus 157 ---ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~-- 228 (383)
-..+...+..+++.+.. + . -..+..+++|+|.. ..+++++.+ +| +.+.+..||.+.
T Consensus 259 ~~~d~~~~r~l~~LL~~ld~----~---~-----~~~~v~VI~aTN~~----d~LDpAllR~GRfd~~I~~~~P~~~~R~ 322 (398)
T PTZ00454 259 TGADREVQRILLELLNQMDG----F---D-----QTTNVKVIMATNRA----DTLDPALLRPGRLDRKIEFPLPDRRQKR 322 (398)
T ss_pred CCccHHHHHHHHHHHHHhhc----c---C-----CCCCEEEEEecCCc----hhCCHHHcCCCcccEEEEeCCcCHHHHH
Confidence 01111222222322211 1 0 12356678888843 588888876 55 568899999765
Q ss_pred -HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhcch
Q psy6129 229 -IIRVKLASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLGA 282 (383)
Q Consensus 229 -i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~~~ 282 (383)
|.++++...++.....+. .+ .. ....|+..+|+.+++.|+.
T Consensus 323 ~Il~~~~~~~~l~~dvd~~----~l---a~------~t~g~sgaDI~~l~~eA~~ 364 (398)
T PTZ00454 323 LIFQTITSKMNLSEEVDLE----DF---VS------RPEKISAADIAAICQEAGM 364 (398)
T ss_pred HHHHHHHhcCCCCcccCHH----HH---HH------HcCCCCHHHHHHHHHHHHH
Confidence 555555544443221111 11 10 1234678889988887653
No 37
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.89 E-value=1.3e-08 Score=107.20 Aligned_cols=100 Identities=20% Similarity=0.322 Sum_probs=71.5
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHH---------------hhh--hhcCceEEecccccCCh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIY---------------KGL--AQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l---------------~g~--~~~g~w~~~dein~l~~ 154 (383)
+++||+|||||++++.+|+.++.+++.++|++..+...+.+++ ..+ ....+.++|||++++.+
T Consensus 488 lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~ 567 (731)
T TIGR02639 488 LFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP 567 (731)
T ss_pred EEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH
Confidence 5789999999999999999999999999999866644444433 112 12457889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 155 PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 155 ~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
++...+.+.+ +.. .+....|+.+.. .++.+++|+|.+
T Consensus 568 ~~~~~Ll~~l--------d~g-~~~d~~g~~vd~-~~~iii~Tsn~g 604 (731)
T TIGR02639 568 DIYNILLQVM--------DYA-TLTDNNGRKADF-RNVILIMTSNAG 604 (731)
T ss_pred HHHHHHHHhh--------ccC-eeecCCCcccCC-CCCEEEECCCcc
Confidence 9877654333 222 233234555554 467799999975
No 38
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.88 E-value=1.1e-08 Score=84.84 Aligned_cols=129 Identities=15% Similarity=0.148 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHc--cCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHH----------hhhhh
Q psy6129 75 DRCYITLAQALTM--SMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIY----------KGLAQ 139 (383)
Q Consensus 75 ~r~~~~l~~al~~--~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l----------~g~~~ 139 (383)
++....+..++.. ....++.||+|+|||++++.+++.+ +.+++.++|+............ .....
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKA 83 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccC
Confidence 3444555555554 5556789999999999999999998 8889999998866554433211 11234
Q ss_pred cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc-cc
Q psy6129 140 SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF-RT 218 (383)
Q Consensus 140 ~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f-r~ 218 (383)
.+..+++||++.++.+....+.+.+ ...... ...+.++.++++.|+... ..+++.+.++| ..
T Consensus 84 ~~~~lilDe~~~~~~~~~~~~~~~i-------~~~~~~--------~~~~~~~~ii~~~~~~~~--~~~~~~~~~r~~~~ 146 (151)
T cd00009 84 KPGVLFIDEIDSLSRGAQNALLRVL-------ETLNDL--------RIDRENVRVIGATNRPLL--GDLDRALYDRLDIR 146 (151)
T ss_pred CCeEEEEeChhhhhHHHHHHHHHHH-------HhcCce--------eccCCCeEEEEecCcccc--CCcChhHHhhhccE
Confidence 5678899999987555443332222 121110 022356788889887543 56777888887 44
Q ss_pred cc
Q psy6129 219 VA 220 (383)
Q Consensus 219 v~ 220 (383)
+.
T Consensus 147 i~ 148 (151)
T cd00009 147 IV 148 (151)
T ss_pred ee
Confidence 43
No 39
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.87 E-value=1.2e-08 Score=96.50 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=89.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAA 170 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~ 170 (383)
.+++||+|||||++++.+|+.++..+...+++.......+...+.. ...+.++++||+++++.+....+ ...
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vl~iDEi~~l~~~~~e~l-------~~~ 104 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTN-LEEGDVLFIDEIHRLSPAVEELL-------YPA 104 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHh-cccCCEEEEehHhhhCHHHHHHh-------hHH
Confidence 5689999999999999999999998887777665556666665544 34678999999999988765433 222
Q ss_pred HHhcCceeEecCC---cEEEe-cCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHHHHHHHHHh
Q psy6129 171 KKEKKKSFVFTDG---DSIEM-CPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQIIIRVKLA 235 (383)
Q Consensus 171 ~~~~~~~~~~~~~---~~i~~-~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei~l~ 235 (383)
+.+.+..+....+ ..+.. .|.+.+++++|.. ..+++.++++| ..+.+..|+.+.+.+++..
T Consensus 105 ~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~----~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~ 170 (305)
T TIGR00635 105 MEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA----GMLTSPLRDRFGIILRLEFYTVEELAEIVSR 170 (305)
T ss_pred HhhhheeeeeccCccccceeecCCCeEEEEecCCc----cccCHHHHhhcceEEEeCCCCHHHHHHHHHH
Confidence 2233222222112 12221 2345666666542 46788899999 4567888888877777643
No 40
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.87 E-value=9.4e-08 Score=91.23 Aligned_cols=146 Identities=15% Similarity=0.115 Sum_probs=100.3
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhh--------h--
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKG--------L-- 137 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g--------~-- 137 (383)
+|...++...+..+-....++++.|++||||+.+++.+-.... .|++.+||....+ ..+...+-| +
T Consensus 5 S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~ga~~ 83 (329)
T TIGR02974 5 SNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSELFGHEAGAFTGAQK 83 (329)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHHHhccccccccCccc
Confidence 4566777777777778888999999999999999998766554 6899999996543 334332211 1
Q ss_pred -------hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCc
Q psy6129 138 -------AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKE 207 (383)
Q Consensus 138 -------~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~ 207 (383)
...|+.+++||++.++.++...+...+ .++ .+.. .|..-..+.++++++|+|..- .....
T Consensus 84 ~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l-------~~~--~~~~-~g~~~~~~~~~RiI~at~~~l~~~~~~g~ 153 (329)
T TIGR02974 84 RHQGRFERADGGTLFLDELATASLLVQEKLLRVI-------EYG--EFER-VGGSQTLQVDVRLVCATNADLPALAAEGR 153 (329)
T ss_pred ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHH-------HcC--cEEe-cCCCceeccceEEEEechhhHHHHhhcCc
Confidence 235788999999999999877664433 332 2222 232224456799999998632 22345
Q ss_pred chHHHHHhccccccCCCCHH
Q psy6129 208 LPENLKIQFRTVAMMVPDRQ 227 (383)
Q Consensus 208 lp~~l~~~fr~v~~~~Pd~~ 227 (383)
+.+.|..++..+.+..|.+.
T Consensus 154 fr~dL~~rl~~~~i~lPpLR 173 (329)
T TIGR02974 154 FRADLLDRLAFDVITLPPLR 173 (329)
T ss_pred hHHHHHHHhcchhcCCCchh
Confidence 66777778877777777744
No 41
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.86 E-value=2.5e-08 Score=94.74 Aligned_cols=147 Identities=21% Similarity=0.219 Sum_probs=92.9
Q ss_pred HHHHH-HHHHcc-CCCCCcCCCCCCccHHHHHHHHHh-------CCcEE--EEeCCCC----------------------
Q psy6129 78 YITLA-QALTMS-MGGSPCGPAGTGKTETVKDMGKTL-------AKYVV--VFNCSDQ---------------------- 124 (383)
Q Consensus 78 ~~~l~-~al~~~-~~~~l~Gp~GtGKT~~i~~la~~l-------g~~~~--~~~c~~~---------------------- 124 (383)
...+. .++..+ .+.++.||+|||||++++.+|+.+ |.++- .+.|...
T Consensus 17 ~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 96 (334)
T PRK13407 17 KQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLG 96 (334)
T ss_pred HHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCC
Confidence 33344 344344 456789999999999999999999 43321 1111110
Q ss_pred CCHHH-HH-----HH--------Hhhhh--hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEe
Q psy6129 125 MDYRG-LG-----RI--------YKGLA--QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEM 188 (383)
Q Consensus 125 ~~~~~-l~-----~~--------l~g~~--~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~ 188 (383)
.+.+. +| .. -.|.. ..|..+++||+|++++++++.+.+ ++.++...+. .+|...+.
T Consensus 97 ~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle-------~mee~~v~v~-r~G~~~~~ 168 (334)
T PRK13407 97 VTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLD-------VAQSGENVVE-REGLSIRH 168 (334)
T ss_pred CCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHH-------HHHcCCeEEE-ECCeEEec
Confidence 01111 11 11 12322 345789999999999999887644 3344432333 36777888
Q ss_pred cCCeeEEEeeCCCCCCCCcchHHHHHhcc-ccccCCCCH-HHHHHHHHh
Q psy6129 189 CPEFGIFITMNPGYAGRKELPENLKIQFR-TVAMMVPDR-QIIIRVKLA 235 (383)
Q Consensus 189 ~~~~~if~T~np~~~g~~~lp~~l~~~fr-~v~~~~Pd~-~~i~ei~l~ 235 (383)
...|.+++|+||.. .++|+.+..+|- .+.+.+|+. +.-.+++..
T Consensus 169 p~rfiviAt~NP~e---~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 169 PARFVLVGSGNPEE---GELRPQLLDRFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred CCCEEEEecCCccc---CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 88999999999952 469999999994 566766655 554555543
No 42
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.85 E-value=1.4e-08 Score=88.93 Aligned_cols=118 Identities=21% Similarity=0.244 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEE--EEeCCCCCCHHH---------------------HH
Q psy6129 75 DRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVV--VFNCSDQMDYRG---------------------LG 131 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~--~~~c~~~~~~~~---------------------l~ 131 (383)
+.....+..|...+.+.++.||+|||||++++.++..|...-. .+..+...+... ..
T Consensus 9 e~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~ 88 (206)
T PF01078_consen 9 EEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEA 88 (206)
T ss_dssp HHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HH
T ss_pred HHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHH
Confidence 3455666666677778889999999999999999988753211 111111111000 01
Q ss_pred HHHh-------h--hhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC
Q psy6129 132 RIYK-------G--LAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP 200 (383)
Q Consensus 132 ~~l~-------g--~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np 200 (383)
.++- | +...+..+++||++..+..++..+.+ .+.++... +...|..+...-+|.+++||||
T Consensus 89 ~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~-------ple~g~v~-i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 89 ALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQ-------PLEDGEVT-ISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp HHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHH-------HHHHSBEE-EEETTEEEEEB--EEEEEEE-S
T ss_pred HHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHH-------HHHCCeEE-EEECCceEEEecccEEEEEecc
Confidence 1121 2 34678899999999999999887644 44454433 3347888888889999999999
No 43
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.84 E-value=1.6e-07 Score=99.96 Aligned_cols=131 Identities=18% Similarity=0.158 Sum_probs=83.9
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhC----------CcEEEEeCCCC---CCH-----HHHHHHHhhhhh--cCceEEec
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLA----------KYVVVFNCSDQ---MDY-----RGLGRIYKGLAQ--SGSWGCFD 147 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg----------~~~~~~~c~~~---~~~-----~~l~~~l~g~~~--~g~w~~~d 147 (383)
...++|+||||+|||++++.+|+.+. ..++.++.+.- +.+ ..+.+++.-+.. .+..+++|
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfID 287 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFID 287 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 34567899999999999999999873 34555555432 122 235555655543 35688899
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHHhccccccCCCCH
Q psy6129 148 EFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKIQFRTVAMMVPDR 226 (383)
Q Consensus 148 ein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~~fr~v~~~~Pd~ 226 (383)
|++.+...-=+...+....++....+ .| ...+++|+++ +|....+++++|.++|..|.+..|+.
T Consensus 288 Eih~l~~~g~~~~~~d~~n~Lkp~l~--------~G-------~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~ 352 (852)
T TIGR03345 288 EAHTLIGAGGQAGQGDAANLLKPALA--------RG-------ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDE 352 (852)
T ss_pred ChHHhccCCCccccccHHHHhhHHhh--------CC-------CeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCH
Confidence 99987431000001111112222112 12 3567778776 56555789999999999999999999
Q ss_pred HHHHHHH
Q psy6129 227 QIIIRVK 233 (383)
Q Consensus 227 ~~i~ei~ 233 (383)
+...+++
T Consensus 353 ~~~~~iL 359 (852)
T TIGR03345 353 ETAIRML 359 (852)
T ss_pred HHHHHHH
Confidence 9888874
No 44
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.84 E-value=7.2e-08 Score=92.03 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=101.1
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhh-----------
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKG----------- 136 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g----------- 136 (383)
.|...++...+..+.....+++++|++||||+.+++.+-... +.|++.+||....+ ..+...+-|
T Consensus 12 S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~~~~~g~~~ 90 (326)
T PRK11608 12 ANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQK 90 (326)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HHHHHHHccccccccCCccc
Confidence 556788888888888888999999999999999999877655 36899999998543 434433211
Q ss_pred ----h--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCc
Q psy6129 137 ----L--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKE 207 (383)
Q Consensus 137 ----~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~ 207 (383)
. ...|..+++||++.++.+....+...+ .++ .+.. .|..-....++++++|++..- .....
T Consensus 91 ~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l-------~~~--~~~~-~g~~~~~~~~~RiI~~s~~~l~~l~~~g~ 160 (326)
T PRK11608 91 RHPGRFERADGGTLFLDELATAPMLVQEKLLRVI-------EYG--ELER-VGGSQPLQVNVRLVCATNADLPAMVAEGK 160 (326)
T ss_pred ccCCchhccCCCeEEeCChhhCCHHHHHHHHHHH-------hcC--cEEe-CCCCceeeccEEEEEeCchhHHHHHHcCC
Confidence 1 245778999999999999877664433 232 2222 232234445789999998642 22346
Q ss_pred chHHHHHhccccccCCCCHH
Q psy6129 208 LPENLKIQFRTVAMMVPDRQ 227 (383)
Q Consensus 208 lp~~l~~~fr~v~~~~Pd~~ 227 (383)
+.+.|..+|..+.+..|...
T Consensus 161 f~~dL~~~l~~~~i~lPpLR 180 (326)
T PRK11608 161 FRADLLDRLAFDVVQLPPLR 180 (326)
T ss_pred chHHHHHhcCCCEEECCChh
Confidence 77778888877777777743
No 45
>KOG0735|consensus
Probab=98.83 E-value=7.6e-08 Score=96.46 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=75.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCc----EEEEeCCCC--CCHHHHHHHHhhhh-----hcCceEEecccccCCh---
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKY----VVVFNCSDQ--MDYRGLGRIYKGLA-----QSGSWGCFDEFNRIEL--- 154 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~----~~~~~c~~~--~~~~~l~~~l~g~~-----~~g~w~~~dein~l~~--- 154 (383)
...+|.||+|+|||.++++++..+-++ +..++|+.. ...+.++..+..++ ...+.+++|+++.+-.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc
Confidence 345578999999999999999988765 346799863 34455666665544 3456789999986632
Q ss_pred ---hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hcc-ccccCCCCHHH
Q psy6129 155 ---PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QFR-TVAMMVPDRQI 228 (383)
Q Consensus 155 ---~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~fr-~v~~~~Pd~~~ 228 (383)
.-.....+.+...++++.. .|. +.+...++++|.+. -..|++.|-+ +|. .+++..|+.+.
T Consensus 512 ~e~~q~~~~~~rla~flnqvi~---~y~-------~~~~~ia~Iat~qe----~qtl~~~L~s~~~Fq~~~~L~ap~~~~ 577 (952)
T KOG0735|consen 512 NENGQDGVVSERLAAFLNQVIK---IYL-------KRNRKIAVIATGQE----LQTLNPLLVSPLLFQIVIALPAPAVTR 577 (952)
T ss_pred ccCCcchHHHHHHHHHHHHHHH---HHH-------ccCcEEEEEEechh----hhhcChhhcCccceEEEEecCCcchhH
Confidence 1122233333222222221 111 11222567777663 3566666642 443 34667777655
Q ss_pred HHHHH
Q psy6129 229 IIRVK 233 (383)
Q Consensus 229 i~ei~ 233 (383)
=.+|+
T Consensus 578 R~~IL 582 (952)
T KOG0735|consen 578 RKEIL 582 (952)
T ss_pred HHHHH
Confidence 44443
No 46
>KOG0738|consensus
Probab=98.81 E-value=1.8e-08 Score=94.46 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=85.9
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC-----CHHHHHHHHhhh--hhcCceEEecccccCChhh---
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM-----DYRGLGRIYKGL--AQSGSWGCFDEFNRIELPV--- 156 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~-----~~~~l~~~l~g~--~~~g~w~~~dein~l~~~~--- 156 (383)
.-++++++||||||||.++|++|..+|.-++.+..+.-+ +.+.|.|++--+ ....+.++||||+.+-..-
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s 323 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS 323 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc
Confidence 456778999999999999999999999776555544433 344566766443 3467899999999551100
Q ss_pred -HHHHHHHH-HHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHH---HHH
Q psy6129 157 -LSVAAQQV-AVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQ---III 230 (383)
Q Consensus 157 -ls~l~~~~-~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~---~i~ 230 (383)
---.+..+ .+++-++..-+.. . ++ ..-..+.+++|-. =+|+++|+++| .-|++..||.+ .++
T Consensus 324 ~EHEaSRRvKsELLvQmDG~~~t--~-e~-----~k~VmVLAATN~P----WdiDEAlrRRlEKRIyIPLP~~~~R~~Li 391 (491)
T KOG0738|consen 324 SEHEASRRVKSELLVQMDGVQGT--L-EN-----SKVVMVLAATNFP----WDIDEALRRRLEKRIYIPLPDAEARSALI 391 (491)
T ss_pred cchhHHHHHHHHHHHHhhccccc--c-cc-----ceeEEEEeccCCC----cchHHHHHHHHhhheeeeCCCHHHHHHHH
Confidence 00001111 0112222111111 0 11 1224566777744 38999999999 57899999954 566
Q ss_pred HHHHhhcCC
Q psy6129 231 RVKLASCGF 239 (383)
Q Consensus 231 ei~l~~~gf 239 (383)
++.|....-
T Consensus 392 ~~~l~~~~~ 400 (491)
T KOG0738|consen 392 KILLRSVEL 400 (491)
T ss_pred HHhhccccC
Confidence 776655433
No 47
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.81 E-value=2.2e-08 Score=101.13 Aligned_cols=128 Identities=19% Similarity=0.179 Sum_probs=83.7
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhhh-hcCceEEecccccCChhhHH---
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGLA-QSGSWGCFDEFNRIELPVLS--- 158 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls--- 158 (383)
.+.+++||||||||++++++|..++.+++.+++++-. ....+.+++.-+. ...+.+++||++.+...--.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~ 168 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLG 168 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcC
Confidence 4567899999999999999999999999988876522 3344566666553 35689999999876432111
Q ss_pred ----HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHH
Q psy6129 159 ----VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIR 231 (383)
Q Consensus 159 ----~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~e 231 (383)
...+.+..++..+. .+ .-++++.+++|+|.. ..+++++++ +| +.+.+..||.+.-.+
T Consensus 169 ~~~~~~~~~~~~lL~~~d----~~--------~~~~~v~vI~aTn~~----~~ld~al~r~gRfd~~i~i~~Pd~~~R~~ 232 (495)
T TIGR01241 169 GGNDEREQTLNQLLVEMD----GF--------GTNTGVIVIAATNRP----DVLDPALLRPGRFDRQVVVDLPDIKGREE 232 (495)
T ss_pred CccHHHHHHHHHHHhhhc----cc--------cCCCCeEEEEecCCh----hhcCHHHhcCCcceEEEEcCCCCHHHHHH
Confidence 11111222222211 11 112456788888863 478888886 55 678999999854444
Q ss_pred H
Q psy6129 232 V 232 (383)
Q Consensus 232 i 232 (383)
+
T Consensus 233 i 233 (495)
T TIGR01241 233 I 233 (495)
T ss_pred H
Confidence 3
No 48
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.81 E-value=5.2e-08 Score=98.20 Aligned_cols=195 Identities=17% Similarity=0.246 Sum_probs=116.1
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHH-----------hCCcEEEEeCCCCCCHHHHHHHHh----
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKT-----------LAKYVVVFNCSDQMDYRGLGRIYK---- 135 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~-----------lg~~~~~~~c~~~~~~~~l~~~l~---- 135 (383)
+|...++...+..+-....++++.|++||||+.+++.+-.. -+.|++.+||..-.+ +.+..-+-
T Consensus 225 S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~lleseLFG~~~ 303 (538)
T PRK15424 225 SPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLLEAELFGYEE 303 (538)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhHHHHhcCCcc
Confidence 34566777777666677888999999999999999998766 456899999997654 32332221
Q ss_pred ------------hh--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 136 ------------GL--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 136 ------------g~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
|. ...|+.+++||++.++.+....+.. .+.++ .+.. .|..-...-++++++++|..
T Consensus 304 gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~-------~L~e~--~~~r-~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 304 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLR-------VLEEK--EVTR-VGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred ccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHh-------hhhcC--eEEe-cCCCceeccceEEEEecCCC
Confidence 11 3457789999999999998776633 33333 2222 23222344678999998853
Q ss_pred C---CCCCcchHHHHHhccccccCCCCHH-------HHHHHHHhhc--CCCchHHHHHHHHHHHHHHHHhccCCCCCcc-
Q psy6129 202 Y---AGRKELPENLKIQFRTVAMMVPDRQ-------IIIRVKLASC--GFLENITLARKFYTLYKLCEEQLTKQVHYDF- 268 (383)
Q Consensus 202 ~---~g~~~lp~~l~~~fr~v~~~~Pd~~-------~i~ei~l~~~--gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f- 268 (383)
- .....+.+.|-.++..+.+..|.+. .+++-++... .+.. .++.....+...+.+.| .+|+|
T Consensus 374 L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~--~~~~~a~~~~~~a~~~L---~~y~WP 448 (538)
T PRK15424 374 LEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA--PFSAALRQGLQQCETLL---LHYDWP 448 (538)
T ss_pred HHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC--CCCHHHHHhhHHHHHHH---HhCCCC
Confidence 1 1112344445555566777777632 3333333221 1100 12222222222222222 36777
Q ss_pred -ChhhhHHHHHhcc
Q psy6129 269 -GLRNILSVLRSLG 281 (383)
Q Consensus 269 -~lR~l~~vi~~~~ 281 (383)
|+|+|++++..+.
T Consensus 449 GNvREL~nvier~~ 462 (538)
T PRK15424 449 GNVRELRNLMERLA 462 (538)
T ss_pred chHHHHHHHHHHHH
Confidence 6999999988654
No 49
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.79 E-value=2e-08 Score=98.12 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=81.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCC-------
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIE------- 153 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~------- 153 (383)
..+.+++||||||||++++++|+.++.+++.++|++-.. ...+..++.-+. ..++.+++||++.+.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~ 244 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG 244 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC
Confidence 345778999999999999999999999999999876432 122333443332 345789999999762
Q ss_pred ----hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCH
Q psy6129 154 ----LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDR 226 (383)
Q Consensus 154 ----~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~ 226 (383)
.++...+. .++..+. .+. -..++.+++|+|.. ..+++++++ +| +.+.+..||.
T Consensus 245 ~~~~~~~~~~l~----~lL~~ld----~~~--------~~~~v~VI~aTn~~----~~ld~allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 245 TSGDREVQRTLM----QLLAEMD----GFD--------PRGNVKIIAATNRI----DILDPAILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred CCccHHHHHHHH----HHHHhcc----ccC--------CCCCEEEEEecCCh----hhCCHHHcCCccCceEEEECCCCH
Confidence 12211121 1111111 110 11356788898853 478888875 66 6789999998
Q ss_pred HHHHHHH
Q psy6129 227 QIIIRVK 233 (383)
Q Consensus 227 ~~i~ei~ 233 (383)
+.-.+++
T Consensus 305 ~~R~~Il 311 (389)
T PRK03992 305 EGRLEIL 311 (389)
T ss_pred HHHHHHH
Confidence 7665554
No 50
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.79 E-value=2.6e-08 Score=104.86 Aligned_cols=134 Identities=15% Similarity=0.220 Sum_probs=87.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHH------------HHHhhhhh---cCceEEecccccCChh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLG------------RIYKGLAQ---SGSWGCFDEFNRIELP 155 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~------------~~l~g~~~---~g~w~~~dein~l~~~ 155 (383)
.+++||+|+|||++++.+|+.+|++++.++++...+...+. +++..... .+..+++||+|++..+
T Consensus 352 i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~ 431 (784)
T PRK10787 352 LCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSD 431 (784)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccc
Confidence 45789999999999999999999999999998877766542 22222333 3347899999999876
Q ss_pred hHHHHHHHHHHHHHHHHhcCceeEecCC-cEEEec-CCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 156 VLSVAAQQVAVVLAAKKEKKKSFVFTDG-DSIEMC-PEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 156 ~ls~l~~~~~~i~~~~~~~~~~~~~~~~-~~i~~~-~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
........ ++..+ +......+.+. -.+..+ .++.+++|.|. ..+|+.|++|+..+.+..++.+...+|.
T Consensus 432 ~~g~~~~a---Llevl-d~~~~~~~~d~~~~~~~dls~v~~i~TaN~-----~~i~~aLl~R~~ii~~~~~t~eek~~Ia 502 (784)
T PRK10787 432 MRGDPASA---LLEVL-DPEQNVAFSDHYLEVDYDLSDVMFVATSNS-----MNIPAPLLDRMEVIRLSGYTEDEKLNIA 502 (784)
T ss_pred cCCCHHHH---HHHHh-ccccEEEEecccccccccCCceEEEEcCCC-----CCCCHHHhcceeeeecCCCCHHHHHHHH
Confidence 42111112 22222 22222222111 111111 45677788874 2599999999999888777766665553
No 51
>KOG0730|consensus
Probab=98.78 E-value=1.3e-08 Score=101.41 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=94.5
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhhh-hcCceEEecccccCChhh-
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGLA-QSGSWGCFDEFNRIELPV- 156 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~~-~~g~w~~~dein~l~~~~- 156 (383)
++.-+|++++||||||||+++|++|...+.+++.+.+.+-+ +...+.++|.-+- ...+.++|||+|-+..+=
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~ 544 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG 544 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC
Confidence 45567889999999999999999999999999999777644 3445778887663 345899999999553221
Q ss_pred --HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHH---
Q psy6129 157 --LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQI--- 228 (383)
Q Consensus 157 --ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~--- 228 (383)
-+..+.. +++++.... +|-. ...+.-+++++|-. ..|++++.+ || +.+++..||.+.
T Consensus 545 g~~~~v~~R---VlsqLLtEm------DG~e--~~k~V~ViAATNRp----d~ID~ALlRPGRlD~iiyVplPD~~aR~~ 609 (693)
T KOG0730|consen 545 GSSSGVTDR---VLSQLLTEM------DGLE--ALKNVLVIAATNRP----DMIDPALLRPGRLDRIIYVPLPDLEARLE 609 (693)
T ss_pred CCccchHHH---HHHHHHHHc------cccc--ccCcEEEEeccCCh----hhcCHHHcCCcccceeEeecCccHHHHHH
Confidence 0011111 122222111 2211 12567788899854 478888887 66 788999999875
Q ss_pred HHHHHHhhcCCCch
Q psy6129 229 IIRVKLASCGFLEN 242 (383)
Q Consensus 229 i~ei~l~~~gf~~~ 242 (383)
|.+..+....|...
T Consensus 610 Ilk~~~kkmp~~~~ 623 (693)
T KOG0730|consen 610 ILKQCAKKMPFSED 623 (693)
T ss_pred HHHHHHhcCCCCcc
Confidence 44555555555443
No 52
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.77 E-value=5.2e-08 Score=83.80 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=78.7
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHh-------------
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYK------------- 135 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~------------- 135 (383)
|...++...+-.+.....+++++|++||||+.+++.+-+... .|++.+||+.- +.+.+...+-
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~~~~~~~~~~ 84 (168)
T PF00158_consen 6 PAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL-PEELLESELFGHEKGAFTGARSD 84 (168)
T ss_dssp HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS--HHHHHHHHHEBCSSSSTTTSSE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh-hcchhhhhhhccccccccccccc
Confidence 455666666767777788899999999999999999888664 58999999965 4444443331
Q ss_pred --hh--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC
Q psy6129 136 --GL--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP 200 (383)
Q Consensus 136 --g~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np 200 (383)
|+ ...|..+++||++.+++++...+.+. +.++ .+... |..-....++++++|+|.
T Consensus 85 ~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~-------l~~~--~~~~~-g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 85 KKGLLEQANGGTLFLDEIEDLPPELQAKLLRV-------LEEG--KFTRL-GSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHH-------HHHS--EEECC-TSSSEEE--EEEEEEESS
T ss_pred cCCceeeccceEEeecchhhhHHHHHHHHHHH-------Hhhc--hhccc-cccccccccceEEeecCc
Confidence 32 34688999999999999998776433 3343 33332 222233457999999984
No 53
>KOG2004|consensus
Probab=98.77 E-value=1.3e-08 Score=101.88 Aligned_cols=154 Identities=18% Similarity=0.279 Sum_probs=99.1
Q ss_pred hhHHHHHHHHH-HHH-ccCCC--CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH------------HHHHhh
Q psy6129 73 LTDRCYITLAQ-ALT-MSMGG--SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL------------GRIYKG 136 (383)
Q Consensus 73 ~t~r~~~~l~~-al~-~~~~~--~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l------------~~~l~g 136 (383)
.-+|.+-.+.- -|+ .-.|. |++||||+|||++.+++|++|||.+++|.-..-+|.+++ ||++.+
T Consensus 419 VKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~ 498 (906)
T KOG2004|consen 419 VKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQC 498 (906)
T ss_pred HHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHH
Confidence 35666554442 222 22343 457999999999999999999999999999999998887 455555
Q ss_pred hhh---cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeE--ecCCcEEEecCCeeEEEeeCCCCCCCCcchHH
Q psy6129 137 LAQ---SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFV--FTDGDSIEMCPEFGIFITMNPGYAGRKELPEN 211 (383)
Q Consensus 137 ~~~---~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~--~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~ 211 (383)
+-. .+-.+.+||+|++-....-.=+..+.++++.-+.. .|. + -+-.+.+ ...-|++|.|. ...||+.
T Consensus 499 LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNa--nFlDHY-LdVp~DL-SkVLFicTAN~----idtIP~p 570 (906)
T KOG2004|consen 499 LKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNA--NFLDHY-LDVPVDL-SKVLFICTANV----IDTIPPP 570 (906)
T ss_pred HHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhcc--chhhhc-cccccch-hheEEEEeccc----cccCChh
Confidence 533 44578899999986543322233334444443222 221 1 1122333 34678899995 4689999
Q ss_pred HHHhccccccCC---CCHHHHHHHHH
Q psy6129 212 LKIQFRTVAMMV---PDRQIIIRVKL 234 (383)
Q Consensus 212 l~~~fr~v~~~~---Pd~~~i~ei~l 234 (383)
|++|.-.|.+.- -+.-.|++-+|
T Consensus 571 LlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 571 LLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hhhhhheeeccCccHHHHHHHHHHhh
Confidence 999999887742 12224555554
No 54
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.77 E-value=3.8e-07 Score=97.71 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=82.3
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCCC---CH-----HHHHHHHhhhhh--cCceEEec
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQM---DY-----RGLGRIYKGLAQ--SGSWGCFD 147 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~~---~~-----~~l~~~l~g~~~--~g~w~~~d 147 (383)
...++|+||||+|||++++.+|+.+ |.+++.++.+... .+ ..+.+++.-+.. .+..+++|
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfID 273 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFID 273 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEec
Confidence 3456789999999999999999986 6677777655432 11 124444544433 35788999
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHHhccccccCCCCH
Q psy6129 148 EFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKIQFRTVAMMVPDR 226 (383)
Q Consensus 148 ein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~~fr~v~~~~Pd~ 226 (383)
|++.+...--+..+.....++....+ . ....+++++++ +|....++++++.++|.+|.+..|+.
T Consensus 274 Eih~l~~~g~~~~~~d~~~~Lk~~l~--------~-------g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~ 338 (852)
T TIGR03346 274 ELHTLVGAGKAEGAMDAGNMLKPALA--------R-------GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTV 338 (852)
T ss_pred cHHHhhcCCCCcchhHHHHHhchhhh--------c-------CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCH
Confidence 99976421000000111111111111 1 23567777765 55444578999999999999999998
Q ss_pred HHHHHHH
Q psy6129 227 QIIIRVK 233 (383)
Q Consensus 227 ~~i~ei~ 233 (383)
+...+++
T Consensus 339 ~~~~~iL 345 (852)
T TIGR03346 339 EDTISIL 345 (852)
T ss_pred HHHHHHH
Confidence 8887765
No 55
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.76 E-value=1.3e-07 Score=95.91 Aligned_cols=171 Identities=16% Similarity=0.220 Sum_probs=101.1
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCC-CCCHHHH-----HH----HH-------------
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSD-QMDYRGL-----GR----IY------------- 134 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~-~~~~~~l-----~~----~l------------- 134 (383)
..+.+++||+|||||++++.+.+.. +.+++.++|+. .++...+ +. +.
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~ 165 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQ 165 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCccc
Confidence 3567789999999999999987642 35788999974 2222111 11 01
Q ss_pred --hhh--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCcee----EecCCcE----------EEecCCeeEEE
Q psy6129 135 --KGL--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSF----VFTDGDS----------IEMCPEFGIFI 196 (383)
Q Consensus 135 --~g~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~----~~~~~~~----------i~~~~~~~if~ 196 (383)
.|+ ...|..+++||+++++++....+.+.+ .++...+ ....++. -....++++++
T Consensus 166 ~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~L-------e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ 238 (531)
T TIGR02902 166 PKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVL-------EDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIG 238 (531)
T ss_pred ccCchhhccCCcEEEEechhhCCHHHHHHHHHHH-------HhCeeeeccccccccCcccccchhhhcccCcccceEEEE
Confidence 111 235789999999999998877654333 2321110 0001111 12345788887
Q ss_pred eeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhh
Q psy6129 197 TMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNI 273 (383)
Q Consensus 197 T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l 273 (383)
+++.. -.++|+.+++++..+.+..++.+.+.++. +...|+.-.....+.+ .+|.++.|++
T Consensus 239 ATt~~---p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I--------------~~y~~n~Rel 301 (531)
T TIGR02902 239 ATTRN---PEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELI--------------VKYASNGREA 301 (531)
T ss_pred EecCC---cccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH--------------HHhhhhHHHH
Confidence 76542 24799999999988887766655555543 3334443222211111 1244567898
Q ss_pred HHHHHhcch
Q psy6129 274 LSVLRSLGA 282 (383)
Q Consensus 274 ~~vi~~~~~ 282 (383)
.++++.|..
T Consensus 302 ~nll~~Aa~ 310 (531)
T TIGR02902 302 VNIVQLAAG 310 (531)
T ss_pred HHHHHHHHH
Confidence 888887653
No 56
>PLN03025 replication factor C subunit; Provisional
Probab=98.76 E-value=3e-07 Score=87.62 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=86.1
Q ss_pred CCcCCCCCCccHHHHHHHHHh-CC----cEEEEeCCCCCCHHHHHHHHhhhhh--------cCceEEecccccCChhhHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL-AK----YVVVFNCSDQMDYRGLGRIYKGLAQ--------SGSWGCFDEFNRIELPVLS 158 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l-g~----~~~~~~c~~~~~~~~l~~~l~g~~~--------~g~w~~~dein~l~~~~ls 158 (383)
+++||+|||||++++.+|+.+ |. .+..+|.++....+.+...++..++ ....+++||++.+..+...
T Consensus 38 ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~ 117 (319)
T PLN03025 38 ILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQ 117 (319)
T ss_pred EEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHH
Confidence 578999999999999999987 32 3566777776666666655543222 1346789999998876533
Q ss_pred HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHH---h
Q psy6129 159 VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKL---A 235 (383)
Q Consensus 159 ~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~ 235 (383)
.+ ++.+ +. + .+.+.+++++|+ ...+.+.+++++..+.+..|+.+.+.+.+. .
T Consensus 118 aL-------~~~l-E~-----~--------~~~t~~il~~n~----~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~ 172 (319)
T PLN03025 118 AL-------RRTM-EI-----Y--------SNTTRFALACNT----SSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVE 172 (319)
T ss_pred HH-------HHHH-hc-----c--------cCCceEEEEeCC----ccccchhHHHhhhcccCCCCCHHHHHHHHHHHHH
Confidence 32 1111 11 0 133557778885 347788899999999999998877766543 3
Q ss_pred hcCCCchHHHH
Q psy6129 236 SCGFLENITLA 246 (383)
Q Consensus 236 ~~gf~~~~~la 246 (383)
..|+.-.....
T Consensus 173 ~egi~i~~~~l 183 (319)
T PLN03025 173 AEKVPYVPEGL 183 (319)
T ss_pred HcCCCCCHHHH
Confidence 45665444333
No 57
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.74 E-value=1.2e-07 Score=90.39 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=61.6
Q ss_pred cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc-c
Q psy6129 140 SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR-T 218 (383)
Q Consensus 140 ~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr-~ 218 (383)
.|.++++||+|++++.+.+.+. +++.++...+. .+|...+....+.+++|+||.. .++|+.+..+|. .
T Consensus 131 ~~GvL~lDEi~~L~~~~Q~~Ll-------~~l~~g~~~v~-r~G~~~~~~~r~iviat~np~e---g~l~~~LldRf~l~ 199 (337)
T TIGR02030 131 NRGILYIDEVNLLEDHLVDVLL-------DVAASGWNVVE-REGISIRHPARFVLVGSGNPEE---GELRPQLLDRFGLH 199 (337)
T ss_pred cCCEEEecChHhCCHHHHHHHH-------HHHHhCCeEEE-ECCEEEEcCCCEEEEecccccc---CCCCHHHHhhcceE
Confidence 4688999999999999887664 34444432333 3677777778899999999962 469999999997 4
Q ss_pred cccCCCCH-HHHHHHHHh
Q psy6129 219 VAMMVPDR-QIIIRVKLA 235 (383)
Q Consensus 219 v~~~~Pd~-~~i~ei~l~ 235 (383)
+.+.+|+. +...+++..
T Consensus 200 i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 200 AEIRTVRDVELRVEIVER 217 (337)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 57777764 555555544
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2.2e-07 Score=91.59 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=85.8
Q ss_pred HHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l 130 (383)
...+..++..+..+ +++||+|||||++++.+|+.++.. ++.++.......+++
T Consensus 27 v~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~I 106 (484)
T PRK14956 27 IGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENI 106 (484)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHH
Confidence 34566677766544 689999999999999999998752 233333333334445
Q ss_pred HHHHhhhh---hcC--ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 131 GRIYKGLA---QSG--SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 131 ~~~l~g~~---~~g--~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
..+...+. ..| ..+++||+++++.+....+ +..+.+. ..++.|+++++. .
T Consensus 107 ReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NAL-------LKtLEEP--------------p~~viFILaTte----~ 161 (484)
T PRK14956 107 RELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNAL-------LKTLEEP--------------PAHIVFILATTE----F 161 (484)
T ss_pred HHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHH-------HHHhhcC--------------CCceEEEeecCC----h
Confidence 44443322 122 4678899999988765544 2222111 123444444442 3
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCC
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFL 240 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~ 240 (383)
+.||+.+++|+..+.+..++...+.+.+ +...|..
T Consensus 162 ~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~ 199 (484)
T PRK14956 162 HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ 199 (484)
T ss_pred hhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999998888888776665443 3345553
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=98.74 E-value=1.9e-07 Score=94.01 Aligned_cols=133 Identities=20% Similarity=0.151 Sum_probs=89.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhh-------cCceEEecccccCChhhHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQ-------SGSWGCFDEFNRIELPVLSVAA 161 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~-------~g~w~~~dein~l~~~~ls~l~ 161 (383)
...+++||+|||||++++.+|+.+|.+++.+|++...+...+.+++..++. ....+++||++.+....-...
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~- 118 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGG- 118 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhH-
Confidence 456689999999999999999999999999999987777777777654432 356889999998765211111
Q ss_pred HHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchH-HHHHhccccccCCCCHHHHHHHH---Hhhc
Q psy6129 162 QQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPE-NLKIQFRTVAMMVPDRQIIIRVK---LASC 237 (383)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~-~l~~~fr~v~~~~Pd~~~i~ei~---l~~~ 237 (383)
...+.+.+.. ++..+++++|..+ .++. .+++++..|.+..|+...+..++ +...
T Consensus 119 --~~aL~~~l~~----------------~~~~iIli~n~~~----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 119 --ARAILELIKK----------------AKQPIILTANDPY----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred --HHHHHHHHHc----------------CCCCEEEeccCcc----ccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc
Confidence 1112222211 1234666777543 3343 78899999999999887776654 3345
Q ss_pred CCCchHH
Q psy6129 238 GFLENIT 244 (383)
Q Consensus 238 gf~~~~~ 244 (383)
|..-...
T Consensus 177 gi~i~~e 183 (482)
T PRK04195 177 GIECDDE 183 (482)
T ss_pred CCCCCHH
Confidence 6554433
No 60
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.72 E-value=3.2e-07 Score=83.11 Aligned_cols=133 Identities=18% Similarity=0.208 Sum_probs=92.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAA 170 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~ 170 (383)
++++||||.|||+++.-+|+.+|..+.+-+...--.+.++..++.+ ...|..+++|||.++++.+-..+- -+
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~-Le~~DVLFIDEIHrl~~~vEE~LY-------pa 126 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTN-LEEGDVLFIDEIHRLSPAVEEVLY-------PA 126 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhc-CCcCCeEEEehhhhcChhHHHHhh-------hh
Confidence 4689999999999999999999999888877777778888888766 677999999999999988766542 33
Q ss_pred HHhcCceeEecCC---cEEEec-CCeeEEEeeCCCCCCCCcchHHHHHhcccc-ccCCCCHHHHHHHHHh
Q psy6129 171 KKEKKKSFVFTDG---DSIEMC-PEFGIFITMNPGYAGRKELPENLKIQFRTV-AMMVPDRQIIIRVKLA 235 (383)
Q Consensus 171 ~~~~~~~~~~~~~---~~i~~~-~~~~if~T~np~~~g~~~lp~~l~~~fr~v-~~~~Pd~~~i~ei~l~ 235 (383)
+.+-.-.+.+-.| +.|+++ |.|.++.++.- ...|+.-|+++|-.+ .+.+-..+.+.+|...
T Consensus 127 MEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr----~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r 192 (332)
T COG2255 127 MEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR----AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKR 192 (332)
T ss_pred hhheeEEEEEccCCccceEeccCCCeeEeeeccc----cccccchhHHhcCCeeeeecCCHHHHHHHHHH
Confidence 3343222222122 455543 56777665532 125666788888543 4555555555555543
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=3e-07 Score=91.61 Aligned_cols=137 Identities=17% Similarity=0.193 Sum_probs=86.4
Q ss_pred HHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC------------------------cEEEEeCCCCCCHHHHH
Q psy6129 79 ITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK------------------------YVVVFNCSDQMDYRGLG 131 (383)
Q Consensus 79 ~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~------------------------~~~~~~c~~~~~~~~l~ 131 (383)
..+..++..+..+ +++||+|||||++++.+|+.++. .++.++.+.....+.+.
T Consensus 24 ~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR 103 (472)
T PRK14962 24 KLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIR 103 (472)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHH
Confidence 3445556655443 57999999999999999998864 35566665555556665
Q ss_pred HHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeE-EEeeCCCCCCC
Q psy6129 132 RIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGI-FITMNPGYAGR 205 (383)
Q Consensus 132 ~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~i-f~T~np~~~g~ 205 (383)
++..-+. .....+++||++++..+....+ +..+.+. .+.+.+ ++|.||
T Consensus 104 ~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~L-------Lk~LE~p--------------~~~vv~Ilattn~----- 157 (472)
T PRK14962 104 KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNAL-------LKTLEEP--------------PSHVVFVLATTNL----- 157 (472)
T ss_pred HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHH-------HHHHHhC--------------CCcEEEEEEeCCh-----
Confidence 5443321 2335778999998866543322 2222221 122333 445554
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHH---hhcCCCc
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKL---ASCGFLE 241 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~~~gf~~ 241 (383)
..+++.+++++..+.+..++...+.+.+- ...|..-
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i 196 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI 196 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC
Confidence 47899999999999998888777665543 2345543
No 62
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.71 E-value=2e-07 Score=95.11 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=95.4
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhh--------h--
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKG--------L-- 137 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g--------~-- 137 (383)
.|...++...+..+.....++++.||+||||+.+++.+.... +.|++.+||..-.+ ..+...+-| +
T Consensus 202 s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~ 280 (534)
T TIGR01817 202 SPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TLLESELFGHEKGAFTGAIA 280 (534)
T ss_pred CHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HHHHHHHcCCCCCccCCCCc
Confidence 345666666666666777889999999999999999998875 46899999987644 333332211 1
Q ss_pred -------hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCc
Q psy6129 138 -------AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKE 207 (383)
Q Consensus 138 -------~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~ 207 (383)
...|+.+++||++.++.+....+.+.+ .++ .+.. .|..-....++++++|+|..- .....
T Consensus 281 ~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l-------~~~--~~~~-~~~~~~~~~~~riI~~s~~~l~~~~~~~~ 350 (534)
T TIGR01817 281 QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVL-------QEG--EFER-VGGNRTLKVDVRLVAATNRDLEEAVAKGE 350 (534)
T ss_pred CCCCcccccCCCeEEEechhhCCHHHHHHHHHHH-------hcC--cEEE-CCCCceEeecEEEEEeCCCCHHHHHHcCC
Confidence 235778999999999999877664433 232 2222 122223345789999987531 12345
Q ss_pred chHHHHHhccccccCCCC
Q psy6129 208 LPENLKIQFRTVAMMVPD 225 (383)
Q Consensus 208 lp~~l~~~fr~v~~~~Pd 225 (383)
+.+.|..++..+.+..|.
T Consensus 351 f~~~L~~rl~~~~i~lPp 368 (534)
T TIGR01817 351 FRADLYYRINVVPIFLPP 368 (534)
T ss_pred CCHHHHHHhcCCeeeCCC
Confidence 666676777666666665
No 63
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.70 E-value=5.4e-08 Score=97.12 Aligned_cols=130 Identities=20% Similarity=0.217 Sum_probs=78.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCc--------EEEEeCCCCC--------CHHHHHHHHhhhhh-----cCceEEe
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKY--------VVVFNCSDQM--------DYRGLGRIYKGLAQ-----SGSWGCF 146 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~--------~~~~~c~~~~--------~~~~l~~~l~g~~~-----~g~w~~~ 146 (383)
..+.+|+||||||||++++++|+.++.+ .+.++|...- +...+..++.-+.. ....++|
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfI 295 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFF 295 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 4567899999999999999999999876 3344554211 11223444443322 3568899
Q ss_pred cccccCChhh----HHHH-HHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cc
Q psy6129 147 DEFNRIELPV----LSVA-AQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RT 218 (383)
Q Consensus 147 dein~l~~~~----ls~l-~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~ 218 (383)
||++.+-..- -+.. ...+..++..+ +| +.-.++..+++|+|.. ..|++++++ +| +.
T Consensus 296 DEiD~L~~~R~~~~s~d~e~~il~~LL~~L----------Dg--l~~~~~ViVI~ATN~~----d~LDpALlRpGRfD~~ 359 (512)
T TIGR03689 296 DEMDSIFRTRGSGVSSDVETTVVPQLLSEL----------DG--VESLDNVIVIGASNRE----DMIDPAILRPGRLDVK 359 (512)
T ss_pred ehhhhhhcccCCCccchHHHHHHHHHHHHh----------cc--cccCCceEEEeccCCh----hhCCHhhcCccccceE
Confidence 9999663210 0000 01111222211 11 1112456788898863 478999987 66 56
Q ss_pred cccCCCCHHHHHHHH
Q psy6129 219 VAMMVPDRQIIIRVK 233 (383)
Q Consensus 219 v~~~~Pd~~~i~ei~ 233 (383)
|.+..||.+...+|+
T Consensus 360 I~~~~Pd~e~r~~Il 374 (512)
T TIGR03689 360 IRIERPDAEAAADIF 374 (512)
T ss_pred EEeCCCCHHHHHHHH
Confidence 899999988776665
No 64
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.70 E-value=7.2e-08 Score=106.14 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=89.3
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH-------------------------------------
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY------------------------------------- 127 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~------------------------------------- 127 (383)
+....|++|+||||||||.+||++|...+.|++.+.+++-.+.
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 3445678899999999999999999999999999988764320
Q ss_pred -------HH-----HHHHHhhh-hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeE
Q psy6129 128 -------RG-----LGRIYKGL-AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGI 194 (383)
Q Consensus 128 -------~~-----l~~~l~g~-~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~i 194 (383)
.. +..++.-| ..+.+.+.+|||+.+....-..+ .+..++..+.... . ..-..++-+
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~l--tL~qLLneLDg~~-~--------~~s~~~VIV 1775 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYL--SLGLLVNSLSRDC-E--------RCSTRNILV 1775 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcccee--hHHHHHHHhcccc-c--------cCCCCCEEE
Confidence 00 11123223 35678899999998765421110 0111222221110 0 001245667
Q ss_pred EEeeCCCCCCCCcchHHHHH--hc-cccccCCCCH---HHHHHHHHhhcCCCc
Q psy6129 195 FITMNPGYAGRKELPENLKI--QF-RTVAMMVPDR---QIIIRVKLASCGFLE 241 (383)
Q Consensus 195 f~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~---~~i~ei~l~~~gf~~ 241 (383)
+||+|.. ..|+++|++ || |.|.+..||. ..+..+++...|+.-
T Consensus 1776 IAATNRP----D~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L 1824 (2281)
T CHL00206 1776 IASTHIP----QKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHL 1824 (2281)
T ss_pred EEeCCCc----ccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCC
Confidence 8888853 489999997 77 7888877765 456666666667653
No 65
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.69 E-value=2.2e-07 Score=85.97 Aligned_cols=169 Identities=12% Similarity=0.137 Sum_probs=86.4
Q ss_pred CCcCCCCCCccHHHHHHHHHh---C----CcEEEEeCCCCCCH------HHHHHHHhhhhhcCceEEecccccCChhhHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---A----KYVVVFNCSDQMDY------RGLGRIYKGLAQSGSWGCFDEFNRIELPVLS 158 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g----~~~~~~~c~~~~~~------~~l~~~l~g~~~~g~w~~~dein~l~~~~ls 158 (383)
+++||||||||++++.+|+.+ | ..++.++|+..... ..+..++.- ..|+.+++||++++...--.
T Consensus 46 ll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~--a~~~VL~IDE~~~L~~~~~~ 123 (261)
T TIGR02881 46 IFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKK--ALGGVLFIDEAYSLARGGEK 123 (261)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHh--ccCCEEEEechhhhccCCcc
Confidence 579999999999999999875 2 24455566543221 111222221 23779999999987642110
Q ss_pred -HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC-CCCCcchHHHHHhc-cccccCCCCHHHHHHHH--
Q psy6129 159 -VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY-AGRKELPENLKIQF-RTVAMMVPDRQIIIRVK-- 233 (383)
Q Consensus 159 -~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~-~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei~-- 233 (383)
...+.+..+++.+.+.. .++.++++..|.. ..-..+++.++++| ..+.+..++.+.+.++.
T Consensus 124 ~~~~~~i~~Ll~~~e~~~--------------~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~ 189 (261)
T TIGR02881 124 DFGKEAIDTLVKGMEDNR--------------NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAER 189 (261)
T ss_pred chHHHHHHHHHHHHhccC--------------CCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHH
Confidence 11122333333332211 2344555544421 11235778999999 45666666666555554
Q ss_pred -HhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCcc-ChhhhHHHHHhc
Q psy6129 234 -LASCGFLENITLARKFYTLYKLCEEQLTKQVHYDF-GLRNILSVLRSL 280 (383)
Q Consensus 234 -l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f-~lR~l~~vi~~~ 280 (383)
+...++.-.......+...+..... .....| +-|.+++++..|
T Consensus 190 ~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~~~~gn~R~~~n~~e~a 234 (261)
T TIGR02881 190 MVKEREYKLTEEAKWKLREHLYKVDQ----LSSREFSNARYVRNIIEKA 234 (261)
T ss_pred HHHHcCCccCHHHHHHHHHHHHHHHh----ccCCCCchHHHHHHHHHHH
Confidence 3334443333323333332222211 112223 367777666643
No 66
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.69 E-value=3.1e-07 Score=89.53 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=47.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHH----HHHHHHhhh---------hhcCceEEecccccCCh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYR----GLGRIYKGL---------AQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~----~l~~~l~g~---------~~~g~w~~~dein~l~~ 154 (383)
.++.||||||||++++.+|+.++.|+..++|+.-+... +...++.++ ...++.+++||++++..
T Consensus 119 iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 119 ILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred EEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 55789999999999999999999999999988644321 122333222 22456899999998876
No 67
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.68 E-value=4.2e-07 Score=91.06 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=103.7
Q ss_pred HHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC----------------------------CcEEEEeCCCCCCHHH
Q psy6129 78 YITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA----------------------------KYVVVFNCSDQMDYRG 129 (383)
Q Consensus 78 ~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg----------------------------~~~~~~~c~~~~~~~~ 129 (383)
...+..+...+...++.||+|||||++++.++..+. +|+...+|+... ...
T Consensus 201 ~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~-~~~ 279 (499)
T TIGR00368 201 KRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASK-PAL 279 (499)
T ss_pred HhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccch-hhh
Confidence 455556666667788999999999999999987442 233333333211 111
Q ss_pred HHH---HHhhh--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC---C
Q psy6129 130 LGR---IYKGL--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP---G 201 (383)
Q Consensus 130 l~~---~l~g~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np---~ 201 (383)
++. .-.|. ...|..+++||++.++.+++..+.+.+ .++.-.+. ..|..+....+|++++++|| |
T Consensus 280 ~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~L-------E~~~v~i~-r~g~~~~~pa~frlIaa~Npcpcg 351 (499)
T TIGR00368 280 VGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPI-------EDGSISIS-RASAKIFYPARFQLVAAMNPCPCG 351 (499)
T ss_pred hCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHH-------HcCcEEEE-ecCcceeccCCeEEEEecCCcccC
Confidence 211 11232 345779999999999998887765433 23321222 24556667789999999998 3
Q ss_pred CCCC----------------CcchHHHHHhccc-cccCCCCHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhcc
Q psy6129 202 YAGR----------------KELPENLKIQFRT-VAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLT 261 (383)
Q Consensus 202 ~~g~----------------~~lp~~l~~~fr~-v~~~~Pd~~~i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls 261 (383)
|.+. ..++..|+++|-. +.+..++...+.+ ...| .+...+.+++....+...+.+.
T Consensus 352 ~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~---~~~~-e~s~~ir~rV~~Ar~~q~~R~~ 424 (499)
T TIGR00368 352 HYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLS---TGSG-ESSAEVKQRVIKAREIQNIRYE 424 (499)
T ss_pred cCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhc---cCCC-CCHHHHHHHHHHHHHHHHHHhc
Confidence 4332 2578888888854 4555555554422 1122 3446677777776665555543
No 68
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.67 E-value=3.4e-06 Score=80.08 Aligned_cols=124 Identities=20% Similarity=0.206 Sum_probs=84.9
Q ss_pred HHHHccCC--CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhh-----hcCceEEecccccCChh
Q psy6129 83 QALTMSMG--GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLA-----QSGSWGCFDEFNRIELP 155 (383)
Q Consensus 83 ~al~~~~~--~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~-----~~g~w~~~dein~l~~~ 155 (383)
.++..+.. .++.||||||||++++-+|..++..+..+|.... ..+++..++.-+. ..+..+++||+.|+...
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 34544333 3578999999999999999999999888875432 4466888876551 23568889999998776
Q ss_pred hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEE--eeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 156 VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFI--TMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 156 ~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~--T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
-...+-.. .+ +| .|. +++ |-||.| ++.++|+||.+.+.+..-+.+.|.+.+
T Consensus 120 QQD~lLp~--------vE--------~G-~ii------lIGATTENPsF----~ln~ALlSR~~vf~lk~L~~~di~~~l 172 (436)
T COG2256 120 QQDALLPH--------VE--------NG-TII------LIGATTENPSF----ELNPALLSRARVFELKPLSSEDIKKLL 172 (436)
T ss_pred hhhhhhhh--------hc--------CC-eEE------EEeccCCCCCe----eecHHHhhhhheeeeecCCHHHHHHHH
Confidence 54433111 12 22 111 122 447764 899999999999998877777766655
Q ss_pred H
Q psy6129 234 L 234 (383)
Q Consensus 234 l 234 (383)
-
T Consensus 173 ~ 173 (436)
T COG2256 173 K 173 (436)
T ss_pred H
Confidence 3
No 69
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.67 E-value=1.5e-07 Score=88.13 Aligned_cols=170 Identities=15% Similarity=0.095 Sum_probs=88.1
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCC-------cEEEEeCCCCCC------HHHHHHHHhhhhhcCceEEecccccCChh-
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAK-------YVVVFNCSDQMD------YRGLGRIYKGLAQSGSWGCFDEFNRIELP- 155 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~-------~~~~~~c~~~~~------~~~l~~~l~g~~~~g~w~~~dein~l~~~- 155 (383)
+.++.||||||||++++.+|+.+.. +++.++|++-.. ...+..++.- ..|+.+++||++.+...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~--a~~gvL~iDEi~~L~~~~ 137 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKR--AMGGVLFIDEAYYLYRPD 137 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHH--ccCcEEEEechhhhccCC
Confidence 4568899999999999999887732 577777743221 1111222221 24789999999977211
Q ss_pred hHHHHHH-HHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC-CCCCCcchHHHHHhc-cccccCCCCHHHHHHH
Q psy6129 156 VLSVAAQ-QVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG-YAGRKELPENLKIQF-RTVAMMVPDRQIIIRV 232 (383)
Q Consensus 156 ~ls~l~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~-~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei 232 (383)
--..... ....+++.+.+. ..++.++++.++. -.....+.+.|+++| ..+.+..++.+.+.++
T Consensus 138 ~~~~~~~~~~~~Ll~~le~~--------------~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 138 NERDYGQEAIEILLQVMENQ--------------RDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred CccchHHHHHHHHHHHHhcC--------------CCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 0000111 111222222221 1445666666542 001123467888988 4677777777766665
Q ss_pred H---HhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhc
Q psy6129 233 K---LASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSL 280 (383)
Q Consensus 233 ~---l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~ 280 (383)
. +...++.-.......+ ...+... ....+--|.|.+++++..+
T Consensus 204 ~~~~l~~~~~~l~~~a~~~L---~~~l~~~--~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 204 AGLMLKEQQYRFSAEAEEAF---ADYIALR--RTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHHHhccccCHHHHHHH---HHHHHHh--CCCCCCChHHHHHHHHHHH
Confidence 4 4333433222222222 2222211 1112222489998888754
No 70
>KOG0737|consensus
Probab=98.67 E-value=7.9e-07 Score=83.37 Aligned_cols=151 Identities=23% Similarity=0.230 Sum_probs=92.9
Q ss_pred eeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhh--------hhh
Q psy6129 68 LVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKG--------LAQ 139 (383)
Q Consensus 68 lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g--------~~~ 139 (383)
+|+=|+--+-++.--..+....|++|.||||||||.+++++|+..|-++..+..+.-|+ +-++.-.+. .--
T Consensus 107 ~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~-KWfgE~eKlv~AvFslAsKl 185 (386)
T KOG0737|consen 107 LVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS-KWFGEAQKLVKAVFSLASKL 185 (386)
T ss_pred HHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch-hhHHHHHHHHHHHHhhhhhc
Confidence 44445544444443344556788899999999999999999999999999999998887 333332222 134
Q ss_pred cCceEEecccccCC-------hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHH
Q psy6129 140 SGSWGCFDEFNRIE-------LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENL 212 (383)
Q Consensus 140 ~g~w~~~dein~l~-------~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l 212 (383)
.++.+++||+|..- .+....+-.++ +. +. +|-.-+-+...-+.++.|-+ .+|.+++
T Consensus 186 ~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eF---M~-~W---------DGl~s~~~~rVlVlgATNRP----~DlDeAi 248 (386)
T KOG0737|consen 186 QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEF---MA-LW---------DGLSSKDSERVLVLGATNRP----FDLDEAI 248 (386)
T ss_pred CcceeehhhHHHHHhhcccchHHHHHHHHHHH---HH-Hh---------ccccCCCCceEEEEeCCCCC----ccHHHHH
Confidence 68889999998321 11111111111 11 11 11111111124456677754 5899999
Q ss_pred HHhc-cccccCCCCHH---HHHHHHHhh
Q psy6129 213 KIQF-RTVAMMVPDRQ---IIIRVKLAS 236 (383)
Q Consensus 213 ~~~f-r~v~~~~Pd~~---~i~ei~l~~ 236 (383)
.+|+ +.+.+..||.+ .|.+++|..
T Consensus 249 iRR~p~rf~V~lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 249 IRRLPRRFHVGLPDAEQRRKILKVILKK 276 (386)
T ss_pred HHhCcceeeeCCCchhhHHHHHHHHhcc
Confidence 8888 67788899954 455555543
No 71
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.66 E-value=1.9e-07 Score=88.92 Aligned_cols=113 Identities=22% Similarity=0.255 Sum_probs=78.5
Q ss_pred CcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhh------hhcCceEEecccccC-ChhhHHHHHHHHH
Q psy6129 93 PCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGL------AQSGSWGCFDEFNRI-ELPVLSVAAQQVA 165 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~------~~~g~w~~~dein~l-~~~~ls~l~~~~~ 165 (383)
++||+|+|||++++.+++.+|.+++.+||+. .....+.+.+... ...+..+++||++.+ ..+....+
T Consensus 48 l~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L----- 121 (316)
T PHA02544 48 HSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHL----- 121 (316)
T ss_pred eeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHH-----
Confidence 4799999999999999999999999999998 3344444433322 124568899999987 33322211
Q ss_pred HHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHH
Q psy6129 166 VVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIR 231 (383)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~e 231 (383)
....+. ...++.+++|+|. ...+++.++++|..+.+..|+.....+
T Consensus 122 ---~~~le~-------------~~~~~~~Ilt~n~----~~~l~~~l~sR~~~i~~~~p~~~~~~~ 167 (316)
T PHA02544 122 ---RSFMEA-------------YSKNCSFIITANN----KNGIIEPLRSRCRVIDFGVPTKEEQIE 167 (316)
T ss_pred ---HHHHHh-------------cCCCceEEEEcCC----hhhchHHHHhhceEEEeCCCCHHHHHH
Confidence 111111 0134677888884 357899999999999998998776543
No 72
>CHL00181 cbbX CbbX; Provisional
Probab=98.66 E-value=1.6e-07 Score=87.92 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=88.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC-------cEEEEeCCCCCCHHHHHH---HHhhhh--hcCceEEecccccCChh--h
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK-------YVVVFNCSDQMDYRGLGR---IYKGLA--QSGSWGCFDEFNRIELP--V 156 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~-------~~~~~~c~~~~~~~~l~~---~l~g~~--~~g~w~~~dein~l~~~--~ 156 (383)
.++.||||||||++++.+|+.+.. +++.++++.-.. ..++. -..++. ..|+.+++||++.+... .
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~-~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~ 140 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG-QYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNE 140 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH-HHhccchHHHHHHHHHccCCEEEEEccchhccCCCc
Confidence 367899999999999999987631 355555432110 00110 011221 24779999999987221 0
Q ss_pred HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC-CCCcchHHHHHhcc-ccccCCCCHHHHHHHH-
Q psy6129 157 LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA-GRKELPENLKIQFR-TVAMMVPDRQIIIRVK- 233 (383)
Q Consensus 157 ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~-g~~~lp~~l~~~fr-~v~~~~Pd~~~i~ei~- 233 (383)
-+.-.+....++..+.+. ..++.++++.++.-. ....+++.|+++|. .+.+..++.+.+.++.
T Consensus 141 ~~~~~e~~~~L~~~me~~--------------~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~ 206 (287)
T CHL00181 141 RDYGSEAIEILLQVMENQ--------------RDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAK 206 (287)
T ss_pred cchHHHHHHHHHHHHhcC--------------CCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHH
Confidence 011122222233333221 134566666543200 01134578999985 5777777776666554
Q ss_pred --HhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccC-hhhhHHHHHhc
Q psy6129 234 --LASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFG-LRNILSVLRSL 280 (383)
Q Consensus 234 --l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~-lR~l~~vi~~~ 280 (383)
+...++.-+......+.. .+... . ....|| -|.+++++..+
T Consensus 207 ~~l~~~~~~l~~~~~~~L~~---~i~~~-~--~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 207 IMLEEQQYQLTPEAEKALLD---YIKKR-M--EQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHHHhcCCCChhHHHHHHH---HHHHh-C--CCCCCccHHHHHHHHHHH
Confidence 444555533333333322 22221 1 123366 89999888754
No 73
>CHL00176 ftsH cell division protein; Validated
Probab=98.66 E-value=6.1e-08 Score=99.72 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=82.5
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChhh-----
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELPV----- 156 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~~----- 156 (383)
.+.+|+||||||||.+++++|..+|.|++.++|++-.+ ...+..++.-+. ...+++++||++.+...-
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 296 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIG 296 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCC
Confidence 46778999999999999999999999999999886432 222444454443 345789999999763211
Q ss_pred --HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHH
Q psy6129 157 --LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIR 231 (383)
Q Consensus 157 --ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~e 231 (383)
-....+.+..++..+. .+ .-+++..+++|+|.. ..+++++++ +| +.+.+..||.+.-.+
T Consensus 297 ~~~~e~~~~L~~LL~~~d----g~--------~~~~~ViVIaaTN~~----~~LD~ALlRpGRFd~~I~v~lPd~~~R~~ 360 (638)
T CHL00176 297 GGNDEREQTLNQLLTEMD----GF--------KGNKGVIVIAATNRV----DILDAALLRPGRFDRQITVSLPDREGRLD 360 (638)
T ss_pred CCcHHHHHHHHHHHhhhc----cc--------cCCCCeeEEEecCch----HhhhhhhhccccCceEEEECCCCHHHHHH
Confidence 0011111222222111 11 112456788888853 357788875 55 678899999876655
Q ss_pred HH
Q psy6129 232 VK 233 (383)
Q Consensus 232 i~ 233 (383)
++
T Consensus 361 IL 362 (638)
T CHL00176 361 IL 362 (638)
T ss_pred HH
Confidence 54
No 74
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.66 E-value=9e-08 Score=93.65 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=50.4
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHH----HHHHHHhhh---------hhcCceEEecccccCChh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYR----GLGRIYKGL---------AQSGSWGCFDEFNRIELP 155 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~----~l~~~l~g~---------~~~g~w~~~dein~l~~~ 155 (383)
..++.||+|||||++++.+|+.++.|++.++|+.-+... ++.+++.++ ...++.+++||+++++..
T Consensus 110 ~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 110 NILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence 456789999999999999999999999999998755422 233443322 235678999999999754
No 75
>KOG0734|consensus
Probab=98.66 E-value=9.6e-08 Score=92.93 Aligned_cols=131 Identities=21% Similarity=0.251 Sum_probs=80.1
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHH-------HHHHHHhhh-hhcCceEEecccccC-----C
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYR-------GLGRIYKGL-AQSGSWGCFDEFNRI-----E 153 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~-------~l~~~l~g~-~~~g~w~~~dein~l-----~ 153 (383)
.-+|++|+||||||||.+++++|...|.|++....|+ +|.- .+..++..+ .+..+.+++||+|-+ +
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE-FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~ 414 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE-FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNP 414 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc-hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCc
Confidence 4577889999999999999999999999987666554 3332 234455555 466788999999955 2
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCH---H
Q psy6129 154 LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDR---Q 227 (383)
Q Consensus 154 ~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~---~ 227 (383)
.+. .+.-|-+..++-.+. .|. -+..+-++++.|- ...|+++|.+ +| |.|.++.||. .
T Consensus 415 ~~~-~y~kqTlNQLLvEmD----GF~--------qNeGiIvigATNf----pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~ 477 (752)
T KOG0734|consen 415 SDQ-HYAKQTLNQLLVEMD----GFK--------QNEGIIVIGATNF----PEALDKALTRPGRFDRHVTVPLPDVRGRT 477 (752)
T ss_pred cHH-HHHHHHHHHHHHHhc----CcC--------cCCceEEEeccCC----hhhhhHHhcCCCccceeEecCCCCcccHH
Confidence 332 255555544443221 221 1234455666552 1233433332 23 4678889995 4
Q ss_pred HHHHHHHh
Q psy6129 228 IIIRVKLA 235 (383)
Q Consensus 228 ~i~ei~l~ 235 (383)
.|.+.++.
T Consensus 478 eIL~~yl~ 485 (752)
T KOG0734|consen 478 EILKLYLS 485 (752)
T ss_pred HHHHHHHh
Confidence 56655554
No 76
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.65 E-value=1.1e-07 Score=101.78 Aligned_cols=101 Identities=25% Similarity=0.321 Sum_probs=71.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHH---------------hhhh--hcCceEEecccc
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIY---------------KGLA--QSGSWGCFDEFN 150 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l---------------~g~~--~~g~w~~~dein 150 (383)
.++.||+|||||++++.+|+.+ +.+++.++|++.++...+.+++ .+.. ..+..++|||++
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeie 677 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVE 677 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccc
Confidence 3478999999999999999987 4689999999876655554432 1222 234588999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 151 RIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 151 ~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
++++++...+.+.+ .++ .+....|+.+.. .++.|++|+|-+
T Consensus 678 ka~~~v~~~Ll~~l-------~~g--~l~d~~g~~vd~-rn~iiI~TSn~g 718 (852)
T TIGR03346 678 KAHPDVFNVLLQVL-------DDG--RLTDGQGRTVDF-RNTVIIMTSNLG 718 (852)
T ss_pred cCCHHHHHHHHHHH-------hcC--ceecCCCeEEec-CCcEEEEeCCcc
Confidence 99999987765433 232 222224556655 467799999974
No 77
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.65 E-value=2.8e-07 Score=90.68 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=78.9
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChhh---HH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELPV---LS 158 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~~---ls 158 (383)
.+.+|+||||||||++++++|..++.+++.+.+++-.+ ...+..++.-+. ...+.++|||++.+...- .+
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~s 297 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATS 297 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCC
Confidence 45678999999999999999999999998888776432 112333443332 245678999998653210 00
Q ss_pred ----HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHH
Q psy6129 159 ----VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIR 231 (383)
Q Consensus 159 ----~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~e 231 (383)
.+...+..++..+.. +. -..+..+++|+|. -..+++++.+ +| +.+.+..||.+.-.+
T Consensus 298 gg~~e~qr~ll~LL~~Ldg----~~--------~~~~V~VI~ATNr----~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~ 361 (438)
T PTZ00361 298 GGEKEIQRTMLELLNQLDG----FD--------SRGDVKVIMATNR----IESLDPALIRPGRIDRKIEFPNPDEKTKRR 361 (438)
T ss_pred cccHHHHHHHHHHHHHHhh----hc--------ccCCeEEEEecCC----hHHhhHHhccCCeeEEEEEeCCCCHHHHHH
Confidence 011112222222211 10 1235678888884 2577888764 44 788999999776555
Q ss_pred HH
Q psy6129 232 VK 233 (383)
Q Consensus 232 i~ 233 (383)
|+
T Consensus 362 Il 363 (438)
T PTZ00361 362 IF 363 (438)
T ss_pred HH
Confidence 43
No 78
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.63 E-value=2.7e-07 Score=88.04 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=65.0
Q ss_pred cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc-c
Q psy6129 140 SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR-T 218 (383)
Q Consensus 140 ~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr-~ 218 (383)
.|..+++||+|++++++.+.+ ++++.++...+.. +|...+....|.+++|+||.. ..+|+.+..+|. .
T Consensus 144 ~~GiL~lDEInrL~~~~Q~~L-------Leam~e~~~~ier-~G~s~~~p~rfiviaT~np~e---g~l~~~LldRf~l~ 212 (350)
T CHL00081 144 NRGILYVDEVNLLDDHLVDIL-------LDSAASGWNTVER-EGISIRHPARFVLVGSGNPEE---GELRPQLLDRFGMH 212 (350)
T ss_pred CCCEEEecChHhCCHHHHHHH-------HHHHHhCCeEEee-CCeeeecCCCEEEEeccCccc---CCCCHHHHHHhCce
Confidence 367899999999999998875 3444454334333 677777888999999999962 369999999996 5
Q ss_pred cccCCCC-HHHHHHHHHhhcCC
Q psy6129 219 VAMMVPD-RQIIIRVKLASCGF 239 (383)
Q Consensus 219 v~~~~Pd-~~~i~ei~l~~~gf 239 (383)
+.+.+|+ .....+++-....|
T Consensus 213 i~l~~~~~~~~e~~il~~~~~~ 234 (350)
T CHL00081 213 AEIRTVKDPELRVKIVEQRTSF 234 (350)
T ss_pred eecCCCCChHHHHHHHHhhhcc
Confidence 6788887 46666666543333
No 79
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=7.5e-07 Score=91.54 Aligned_cols=138 Identities=13% Similarity=0.089 Sum_probs=91.0
Q ss_pred HHHHHHHHHccC---CCCCcCCCCCCccHHHHHHHHHhCC------------------------cEEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSM---GGSPCGPAGTGKTETVKDMGKTLAK------------------------YVVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~---~~~l~Gp~GtGKT~~i~~la~~lg~------------------------~~~~~~c~~~~~~~~l 130 (383)
...|..++..+. ..+++||+|||||++++.||+.++. .++.++-......+++
T Consensus 25 v~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdI 104 (830)
T PRK07003 25 VRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEM 104 (830)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHH
Confidence 345556666543 2357899999999999999998863 2344444445555666
Q ss_pred HHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 131 GRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 131 ~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
.+++..+. ....++++||++++..+....+ ++.+.+. .+++.|++++|. .
T Consensus 105 ReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NAL-------LKtLEEP--------------P~~v~FILaTtd----~ 159 (830)
T PRK07003 105 AALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAM-------LKTLEEP--------------PPHVKFILATTD----P 159 (830)
T ss_pred HHHHHHHHhccccCCceEEEEeChhhCCHHHHHHH-------HHHHHhc--------------CCCeEEEEEECC----h
Confidence 66665432 2345788999999987654433 2222221 134566666663 3
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHH---hhcCCC
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKL---ASCGFL 240 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~~~gf~ 240 (383)
+.|++.+++|+..+.+..++.+.|.+.+. ...|..
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 58899999999999999988888776553 334544
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=8.4e-07 Score=89.97 Aligned_cols=139 Identities=13% Similarity=0.118 Sum_probs=90.6
Q ss_pred HHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCC-----------------------------cEEEEeCCCCC
Q psy6129 78 YITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAK-----------------------------YVVVFNCSDQM 125 (383)
Q Consensus 78 ~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~-----------------------------~~~~~~c~~~~ 125 (383)
...+..++..+.- .+++||+|+|||++++.+|+.+.. .++.++.....
T Consensus 25 v~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~ 104 (700)
T PRK12323 25 VRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNR 104 (700)
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccC
Confidence 3455666665543 357899999999999999998864 23344444455
Q ss_pred CHHHHHHHHhhhh---hcC--ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC
Q psy6129 126 DYRGLGRIYKGLA---QSG--SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP 200 (383)
Q Consensus 126 ~~~~l~~~l~g~~---~~g--~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np 200 (383)
..+++.+++..+. ..| ..+++||+++++.+....+ ++.+.+. .+++.|++++|.
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNAL-------LKTLEEP--------------P~~v~FILaTte 163 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAM-------LKTLEEP--------------PEHVKFILATTD 163 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHH-------HHhhccC--------------CCCceEEEEeCC
Confidence 6666777665532 233 3577899999988654432 2222111 133444444442
Q ss_pred CCCCCCcchHHHHHhccccccCCCCHHHHHHHHH---hhcCCCc
Q psy6129 201 GYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKL---ASCGFLE 241 (383)
Q Consensus 201 ~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~~~gf~~ 241 (383)
.+.|++.++||++.+.+..++.+.+.+.+. ...|...
T Consensus 164 ----p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~ 203 (700)
T PRK12323 164 ----PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH 203 (700)
T ss_pred ----hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC
Confidence 368999999999999999999888877654 2455543
No 81
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.63 E-value=6.5e-06 Score=85.53 Aligned_cols=274 Identities=14% Similarity=0.047 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHh-------C---CcEEEEeCCCCCCHHHHH-HH---H---
Q psy6129 75 DRCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTL-------A---KYVVVFNCSDQMDYRGLG-RI---Y--- 134 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~l-------g---~~~~~~~c~~~~~~~~l~-~~---l--- 134 (383)
++....+..++....++ .+.|+||||||.+++.+.+.| + ..++.+||....++..+- .+ +
T Consensus 765 eeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~ 844 (1164)
T PTZ00112 765 KEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNK 844 (1164)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCC
Confidence 33445555566543332 368999999999999988766 2 235788998766655422 11 1
Q ss_pred ----------------hhhhh--c-CceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEE
Q psy6129 135 ----------------KGLAQ--S-GSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIF 195 (383)
Q Consensus 135 ----------------~g~~~--~-g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if 195 (383)
..+.. . -.++++|||+.+....-.. +..+.+.... .+ ..+.++
T Consensus 845 ~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDV----LYnLFR~~~~--------s~------SKLiLI 906 (1164)
T PTZ00112 845 KPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKV----LFTLFDWPTK--------IN------SKLVLI 906 (1164)
T ss_pred CCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHH----HHHHHHHhhc--------cC------CeEEEE
Confidence 11101 1 1368899999887542212 2222221110 11 124567
Q ss_pred EeeCCCCCCCCcchHHHHHhccc--cccCCCCHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhh
Q psy6129 196 ITMNPGYAGRKELPENLKIQFRT--VAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNI 273 (383)
Q Consensus 196 ~T~np~~~g~~~lp~~l~~~fr~--v~~~~Pd~~~i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l 273 (383)
+.+|+-. -...|.++++++|.. +.+..++.+.+.+|+-....-.. ..+.+..+.+ |.+.. .+.+- ..|-.
T Consensus 907 GISNdlD-LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~-gVLdDdAIEL---IArkV-Aq~SG--DARKA 978 (1164)
T PTZ00112 907 AISNTMD-LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK-EIIDHTAIQL---CARKV-ANVSG--DIRKA 978 (1164)
T ss_pred EecCchh-cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC-CCCCHHHHHH---HHHhh-hhcCC--HHHHH
Confidence 7777521 123566688888864 77788888888888754321100 0122222221 11110 11222 25555
Q ss_pred HHHHHhcchhhccCCCChHHHHHHHHHHHhhcCC-------CCCCChHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHHH
Q psy6129 274 LSVLRSLGAAKRVNSRDTESTIVMRVLRDMNLSK-------LIDEDEPLFISLVADLFPNQALEKTAYPALEGAIQEQCE 346 (383)
Q Consensus 274 ~~vi~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~-------l~~~d~~~f~~li~~~Fp~~~~~~~~~~~~~~~i~~~~~ 346 (383)
..+++.|+..++.... ...-+.+|+..++... |.....-++..++... -..........++.+.-...|+
T Consensus 979 LDILRrAgEikegskV--T~eHVrkAleeiE~srI~e~IktLPlHqKLVLlALIlLl-k~tg~~~i~TGEVYerYk~Lce 1055 (1164)
T PTZ00112 979 LQICRKAFENKRGQKI--VPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCLIVEL-RMLNDFIIPYKKVLNRYKVLVE 1055 (1164)
T ss_pred HHHHHHHHhhcCCCcc--CHHHHHHHHHHHHhhhHHHHHHcCCHHHHHHHHHHHHHH-hhcCCCceeHHHHHHHHHHHHH
Confidence 5666666554322211 1111333333222221 2222222333344333 1111112455667777777777
Q ss_pred HcCCccCHHHHHHHHHHHHHHh--ccccEEEECCC
Q psy6129 347 AAGLIFHPPWVLKLIQLYETQR--VRHGIMTLGPT 379 (383)
Q Consensus 347 ~~~l~~~~~~i~kv~~l~~~l~--~~~gviLvG~~ 379 (383)
..+=.+..+-..+ |++..+. ...|+||+-|.
T Consensus 1056 ~~Gk~iGv~plTq--RV~d~L~eL~~LGIIl~ep~ 1088 (1164)
T PTZ00112 1056 TSGKYIGMCSNNE--LFKIMLDKLVKMGILLIRPY 1088 (1164)
T ss_pred hhhhhcCCCCcHH--HHHHHHHHHHhcCeEEecCC
Confidence 4442222222233 6666653 35788888764
No 82
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.62 E-value=3.1e-06 Score=83.43 Aligned_cols=149 Identities=16% Similarity=0.133 Sum_probs=83.3
Q ss_pred ceeechhhHHHHHHHHHHHHc----cCCCCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHHHHHHH----
Q psy6129 67 RLVITPLTDRCYITLAQALTM----SMGGSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRGLGRI---- 133 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~----~~~~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~~l~~~---- 133 (383)
.+|.++....++..+...... ..+.+++||+|+|||++++++++.+ |..++.++|..-+. ..+..+
T Consensus 111 ~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~ 189 (405)
T TIGR00362 111 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNALRNNK 189 (405)
T ss_pred ccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHHHcCC
Confidence 345555544444333332222 1234589999999999999999877 55667777654221 111111
Q ss_pred ---HhhhhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchH
Q psy6129 134 ---YKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPE 210 (383)
Q Consensus 134 ---l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~ 210 (383)
+......-..+++||++.+...- ...+.+..+++.+.+. + ..+++|+|-....-..+.+
T Consensus 190 ~~~~~~~~~~~dlLiiDDi~~l~~~~--~~~~~l~~~~n~~~~~--------~--------~~iiits~~~p~~l~~l~~ 251 (405)
T TIGR00362 190 MEEFKEKYRSVDLLLIDDIQFLAGKE--RTQEEFFHTFNALHEN--------G--------KQIVLTSDRPPKELPGLEE 251 (405)
T ss_pred HHHHHHHHHhCCEEEEehhhhhcCCH--HHHHHHHHHHHHHHHC--------C--------CCEEEecCCCHHHHhhhhh
Confidence 11223345689999999775431 1111222233333222 1 2345566532111234678
Q ss_pred HHHHhcc---ccccCCCCHHHHHHHHH
Q psy6129 211 NLKIQFR---TVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 211 ~l~~~fr---~v~~~~Pd~~~i~ei~l 234 (383)
+++++|. .+.+..||.+...+++.
T Consensus 252 ~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 252 RLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred hhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 8999995 58889999888777664
No 83
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.62 E-value=9.2e-08 Score=85.41 Aligned_cols=130 Identities=17% Similarity=0.240 Sum_probs=85.0
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH------HHHHHHHhhhh-hcCceEEecccccCChhhHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY------RGLGRIYKGLA-QSGSWGCFDEFNRIELPVLSVAA 161 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~------~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls~l~ 161 (383)
+.++++||||||||.++++||.....|++.++..+-... ..+.+++.-+. ...+.+++||+|-+..+ .--
T Consensus 152 knVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLd---Rry 228 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALD---RRY 228 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhh---hhH
Confidence 446789999999999999999999999999987654321 12333444343 45678889999854332 212
Q ss_pred HH----HHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc-ccccCCCCHHHHHHHH
Q psy6129 162 QQ----VAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR-TVAMMVPDRQIIIRVK 233 (383)
Q Consensus 162 ~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr-~v~~~~Pd~~~i~ei~ 233 (383)
|. +.++.+|+...... |+-+.+...++++|. -.-|+++++++|- .+-+..|+.+...+++
T Consensus 229 QelRGDVsEiVNALLTelDg--------i~eneGVvtIaaTN~----p~~LD~aiRsRFEeEIEF~LP~~eEr~~il 293 (368)
T COG1223 229 QELRGDVSEIVNALLTELDG--------IKENEGVVTIAATNR----PELLDPAIRSRFEEEIEFKLPNDEERLEIL 293 (368)
T ss_pred HHhcccHHHHHHHHHHhccC--------cccCCceEEEeecCC----hhhcCHHHHhhhhheeeeeCCChHHHHHHH
Confidence 22 22344554433211 112344555666663 2468899999994 7889999998887776
No 84
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.62 E-value=2.4e-07 Score=98.74 Aligned_cols=100 Identities=25% Similarity=0.318 Sum_probs=72.6
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHH---------------hhhh--hcCceEEeccccc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIY---------------KGLA--QSGSWGCFDEFNR 151 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l---------------~g~~--~~g~w~~~dein~ 151 (383)
++.||+|+|||++++.+|+.+ +..++.++|++-.+...+.+++ ..+. ...+.++||||++
T Consensus 600 lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEiek 679 (852)
T TIGR03345 600 LLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEK 679 (852)
T ss_pred EEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhh
Confidence 578999999999999999988 4578999999877766665553 1111 2346889999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 152 IELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 152 l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
+.+++...+.+.+ +.+ .+....|+.|... ++.+++|+|-+
T Consensus 680 a~~~v~~~Llq~l--------d~g-~l~d~~Gr~vd~~-n~iiI~TSNlg 719 (852)
T TIGR03345 680 AHPDVLELFYQVF--------DKG-VMEDGEGREIDFK-NTVILLTSNAG 719 (852)
T ss_pred cCHHHHHHHHHHh--------hcc-eeecCCCcEEecc-ccEEEEeCCCc
Confidence 9999877664433 222 2333457777764 68899999963
No 85
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.62 E-value=3.6e-07 Score=94.74 Aligned_cols=124 Identities=23% Similarity=0.235 Sum_probs=84.1
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC-----------------------------------CcEEEEeCCCCCC----HHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA-----------------------------------KYVVVFNCSDQMD----YRGL 130 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg-----------------------------------~~~~~~~c~~~~~----~~~l 130 (383)
++++.||+|||||++++.+++.+. .|++.++|+...+ ..++
T Consensus 27 ~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~ 106 (633)
T TIGR02442 27 GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDI 106 (633)
T ss_pred eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccH
Confidence 456789999999999999999982 4666666654211 1112
Q ss_pred HHHH--------hhh--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC
Q psy6129 131 GRIY--------KGL--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP 200 (383)
Q Consensus 131 ~~~l--------~g~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np 200 (383)
.+.+ .|. ...|..+++||+|+++.++++.+. ..+.++...+. ..|.......++.+++|+||
T Consensus 107 ~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll-------~~le~g~~~v~-r~g~~~~~~~~~~lIat~np 178 (633)
T TIGR02442 107 ERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLL-------DAAAMGVNRVE-REGLSVSHPARFVLIGTMNP 178 (633)
T ss_pred HHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHH-------HHHhcCCEEEE-ECCceeeecCCeEEEEecCC
Confidence 2222 232 234578999999999999987763 33334332333 36777788889999999999
Q ss_pred CCCCCCcchHHHHHhcc-ccccCCC
Q psy6129 201 GYAGRKELPENLKIQFR-TVAMMVP 224 (383)
Q Consensus 201 ~~~g~~~lp~~l~~~fr-~v~~~~P 224 (383)
.. ..+++.|.++|- .|.+..|
T Consensus 179 ~e---g~l~~~L~dR~~l~i~v~~~ 200 (633)
T TIGR02442 179 EE---GDLRPQLLDRFGLCVDVAAP 200 (633)
T ss_pred CC---CCCCHHHHhhcceEEEccCC
Confidence 53 369999999994 2444444
No 86
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.62 E-value=2.7e-07 Score=94.62 Aligned_cols=136 Identities=23% Similarity=0.255 Sum_probs=92.1
Q ss_pred HHHHHHccCCC-CCcCCCCCCccHHHHHHHHHhCC--cEEEEeCCCCCCHHH-HHHH-------------Hhhhh--hcC
Q psy6129 81 LAQALTMSMGG-SPCGPAGTGKTETVKDMGKTLAK--YVVVFNCSDQMDYRG-LGRI-------------YKGLA--QSG 141 (383)
Q Consensus 81 l~~al~~~~~~-~l~Gp~GtGKT~~i~~la~~lg~--~~~~~~c~~~~~~~~-l~~~-------------l~g~~--~~g 141 (383)
++.|+....|+ +|.|++|||||++++.+++.++. |++.++++ .+... ++.+ -.|.. ..|
T Consensus 8 ~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~--~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~ 85 (589)
T TIGR02031 8 TLLAVDPSLGGVAIRARAGTGKTALARALAEILPPIMPFVELPLG--VTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPR 85 (589)
T ss_pred HHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc--cchhhcccchhhhhhhhcCcccCCCCCeeeCCC
Confidence 44566666554 46799999999999999999875 57888863 22221 1211 12322 356
Q ss_pred ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccc-cc
Q psy6129 142 SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRT-VA 220 (383)
Q Consensus 142 ~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~-v~ 220 (383)
..+++||+|++++++.+.+. .++.++...+. .+|.......+|++++|+||.. ....||+.|..+|-. |.
T Consensus 86 GvL~lDEi~rl~~~~q~~Ll-------~al~~g~v~i~-r~G~~~~~p~~f~lIAt~np~e-~~g~L~~~LldRf~l~v~ 156 (589)
T TIGR02031 86 GVLYVDMANLLDDGLSNRLL-------QALDEGVVIVE-REGISVVHPAKFALIATYDPAE-GGGGLPDHLLDRLALHVS 156 (589)
T ss_pred CcEeccchhhCCHHHHHHHH-------HHHHcCCeEEE-ECCCceeecCceEEEEecCCcc-ccCCCCHHHHHhccCeee
Confidence 78999999999999988764 34444432232 3577777778999999999963 234899999999964 34
Q ss_pred cC-CCCHH
Q psy6129 221 MM-VPDRQ 227 (383)
Q Consensus 221 ~~-~Pd~~ 227 (383)
+. .|+..
T Consensus 157 ~~~~~~~~ 164 (589)
T TIGR02031 157 LEDVASQD 164 (589)
T ss_pred cCCCCCHH
Confidence 43 34443
No 87
>KOG0741|consensus
Probab=98.61 E-value=2.8e-07 Score=89.69 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=49.7
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhC-CcEEEEeCCCCC------CHHHHHHHHhhh---------hhcCceEEeccc
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLA-KYVVVFNCSDQM------DYRGLGRIYKGL---------AQSGSWGCFDEF 149 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg-~~~~~~~c~~~~------~~~~l~~~l~g~---------~~~g~w~~~dei 149 (383)
..-+|.+|+||||||||-+++++.++|. ++--++|..+-+ +.+.+.++++-+ ...=..+.|||+
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEi 333 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEI 333 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhh
Confidence 4456778999999999999999999996 667778876643 455577777543 333357889999
Q ss_pred cc
Q psy6129 150 NR 151 (383)
Q Consensus 150 n~ 151 (383)
|-
T Consensus 334 DA 335 (744)
T KOG0741|consen 334 DA 335 (744)
T ss_pred HH
Confidence 83
No 88
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.3e-07 Score=85.52 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=83.5
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhh-hhcCceEEecccccCChhhH
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGL-AQSGSWGCFDEFNRIELPVL 157 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~-~~~g~w~~~dein~l~~~~l 157 (383)
+..-+|++|+||||||||.++|++|+..+-.++.+..|+-.. +..+..+|.=| -...+.+++||||-+-..=.
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~ 261 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRF 261 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccc
Confidence 456788999999999999999999999999888887765321 01111112112 24578999999995522100
Q ss_pred H---HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHH---H
Q psy6129 158 S---VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQ---I 228 (383)
Q Consensus 158 s---~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~---~ 228 (383)
. ..-..++--+-.+......|.. ..|..+++++|-- .-|+++|.+ +| |.|-+..||.+ .
T Consensus 262 d~~t~gDrEVQRTmleLL~qlDGFD~--------~~nvKVI~ATNR~----D~LDPALLRPGR~DRkIEfplPd~~gR~~ 329 (406)
T COG1222 262 DSGTSGDREVQRTMLELLNQLDGFDP--------RGNVKVIMATNRP----DILDPALLRPGRFDRKIEFPLPDEEGRAE 329 (406)
T ss_pred cCCCCchHHHHHHHHHHHHhccCCCC--------CCCeEEEEecCCc----cccChhhcCCCcccceeecCCCCHHHHHH
Confidence 0 0111111111111111122322 2567788999842 367777763 33 78889999965 5
Q ss_pred HHHHHHhhc
Q psy6129 229 IIRVKLASC 237 (383)
Q Consensus 229 i~ei~l~~~ 237 (383)
|.+|+...+
T Consensus 330 Il~IHtrkM 338 (406)
T COG1222 330 ILKIHTRKM 338 (406)
T ss_pred HHHHHhhhc
Confidence 666665444
No 89
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.59 E-value=1.2e-07 Score=100.11 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=86.2
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhhhh-cCceEEecccccCChhh----
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGLAQ-SGSWGCFDEFNRIELPV---- 156 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~~~-~g~w~~~dein~l~~~~---- 156 (383)
..+.+|+||||||||++++++|..+|.+++.+++++-. +...+.+++.-+.. ..+.++|||++.+-+.-
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~ 566 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF 566 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC
Confidence 34567899999999999999999999999999987633 23446677766643 46899999999763211
Q ss_pred HHHHHH-HHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHHH
Q psy6129 157 LSVAAQ-QVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIRV 232 (383)
Q Consensus 157 ls~l~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ei 232 (383)
-+...+ .+..++..+.. + .-..+..+++|+|.. ..|++++++ +| +.+.+..||.+.-.++
T Consensus 567 ~~~~~~~~~~~lL~~ldg----~--------~~~~~v~vI~aTn~~----~~ld~allRpgRfd~~i~v~~Pd~~~R~~i 630 (733)
T TIGR01243 567 DTSVTDRIVNQLLTEMDG----I--------QELSNVVVIAATNRP----DILDPALLRPGRFDRLILVPPPDEEARKEI 630 (733)
T ss_pred CccHHHHHHHHHHHHhhc----c--------cCCCCEEEEEeCCCh----hhCCHhhcCCCccceEEEeCCcCHHHHHHH
Confidence 001111 11112222211 0 012456788888853 478888885 77 6789999998776665
Q ss_pred H
Q psy6129 233 K 233 (383)
Q Consensus 233 ~ 233 (383)
.
T Consensus 631 ~ 631 (733)
T TIGR01243 631 F 631 (733)
T ss_pred H
Confidence 4
No 90
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.59 E-value=5.6e-07 Score=90.81 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=92.0
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHh------------
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYK------------ 135 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~------------ 135 (383)
+|...++...+..+-....++++.|++||||+.+++.+-... +.|++.+||..-.+ +.+..-+-
T Consensus 218 S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e-~lleseLFG~~~gaftga~~ 296 (526)
T TIGR02329 218 SAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE-SLLEAELFGYEEGAFTGARR 296 (526)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh-hHHHHHhcCCcccccccccc
Confidence 345666666666666677889999999999999999887654 46899999987644 22333221
Q ss_pred ----hh--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCC
Q psy6129 136 ----GL--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRK 206 (383)
Q Consensus 136 ----g~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~ 206 (383)
|. ...|+.+++||++.+|.+....+.. .+.++. +.. -|..-....++++++|+|..- ....
T Consensus 297 ~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~-------~L~~~~--~~r-~g~~~~~~~dvRiIaat~~~l~~~v~~g 366 (526)
T TIGR02329 297 GGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLR-------VLEERE--VVR-VGGTEPVPVDVRVVAATHCALTTAVQQG 366 (526)
T ss_pred cccccchhhcCCceEEecChHhCCHHHHHHHHH-------HHhcCc--EEe-cCCCceeeecceEEeccCCCHHHHhhhc
Confidence 11 1457789999999999998776643 333332 222 122223345789999988531 1122
Q ss_pred cchHHHHHhccccccCCCC
Q psy6129 207 ELPENLKIQFRTVAMMVPD 225 (383)
Q Consensus 207 ~lp~~l~~~fr~v~~~~Pd 225 (383)
.+.+.|-.++..+.+..|.
T Consensus 367 ~fr~dL~~rL~~~~I~lPP 385 (526)
T TIGR02329 367 RFRRDLFYRLSILRIALPP 385 (526)
T ss_pred chhHHHHHhcCCcEEeCCC
Confidence 3444444455556666666
No 91
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.59 E-value=1.4e-06 Score=93.20 Aligned_cols=100 Identities=20% Similarity=0.335 Sum_probs=70.7
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHH---------------hh-hhhc-CceEEeccccc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIY---------------KG-LAQS-GSWGCFDEFNR 151 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l---------------~g-~~~~-g~w~~~dein~ 151 (383)
++.||+|+|||++++.||+.+ +.+++.+++++.++...+.+++ .. +... -+.++|||+++
T Consensus 543 lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 543 LFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred EEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhh
Confidence 478999999999999999987 4678899998876655554432 11 1222 25788999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 152 IELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 152 l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
+.+++...+.+.+ +.+ .+....|+.|.. .++.|++|+|-+
T Consensus 623 a~~~v~~~Llq~l--------e~g-~~~d~~g~~v~~-~~~i~I~Tsn~g 662 (821)
T CHL00095 623 AHPDIFNLLLQIL--------DDG-RLTDSKGRTIDF-KNTLIIMTSNLG 662 (821)
T ss_pred CCHHHHHHHHHHh--------ccC-ceecCCCcEEec-CceEEEEeCCcc
Confidence 9999877654332 222 333335777776 578999999964
No 92
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.8e-06 Score=83.80 Aligned_cols=137 Identities=11% Similarity=0.135 Sum_probs=85.2
Q ss_pred HHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHHH
Q psy6129 79 ITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGLG 131 (383)
Q Consensus 79 ~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l~ 131 (383)
..+..++..+.. .+++||+|+|||++++.+|+.+... ++.++.......+++.
T Consensus 26 ~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir 105 (363)
T PRK14961 26 TAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMR 105 (363)
T ss_pred HHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHH
Confidence 345556665432 3589999999999999999988521 2223333334555666
Q ss_pred HHHhhhhh-----cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCC
Q psy6129 132 RIYKGLAQ-----SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRK 206 (383)
Q Consensus 132 ~~l~g~~~-----~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~ 206 (383)
+++..+.. ....+++||+++++.+....+ +..+.+. .+.+.++++++. ..
T Consensus 106 ~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naL-------Lk~lEe~--------------~~~~~fIl~t~~----~~ 160 (363)
T PRK14961 106 EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNAL-------LKTLEEP--------------PQHIKFILATTD----VE 160 (363)
T ss_pred HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHH-------HHHHhcC--------------CCCeEEEEEcCC----hH
Confidence 66654322 224788999998887654332 2222221 123344444432 24
Q ss_pred cchHHHHHhccccccCCCCHHHHHHHHH---hhcCCC
Q psy6129 207 ELPENLKIQFRTVAMMVPDRQIIIRVKL---ASCGFL 240 (383)
Q Consensus 207 ~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~~~gf~ 240 (383)
.+++.+++++..+.+..|+.+.+.+.+. ...|..
T Consensus 161 ~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 6999999999999999999888776543 345643
No 93
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.59 E-value=5.8e-06 Score=83.89 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=76.1
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHHHHHHH-------HhhhhhcCceEEecccccCChhhH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRGLGRI-------YKGLAQSGSWGCFDEFNRIELPVL 157 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~~l~~~-------l~g~~~~g~w~~~dein~l~~~~l 157 (383)
+.+|+|++|+|||.+++++++.+ |..++.+++.+-++ +.+..+ +..-...-..+++||++.+...--
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 34678999999999999999876 44556666543221 111111 111123446899999998755331
Q ss_pred HHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc---ccccCCCCHHHHHHHHH
Q psy6129 158 SVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR---TVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 158 s~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr---~v~~~~Pd~~~i~ei~l 234 (383)
..+.+..+.+.+.+.+ -.+++|+|-.-..-..+.+.|+++|. .+.+..||.+.-.+|+.
T Consensus 395 --tqeeLF~l~N~l~e~g----------------k~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 395 --TQEEFFHTFNTLHNAN----------------KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred --HHHHHHHHHHHHHhcC----------------CCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 1123333444443321 23556666432223467889999995 56889999888777764
No 94
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.59 E-value=9.2e-07 Score=89.62 Aligned_cols=145 Identities=13% Similarity=0.147 Sum_probs=96.6
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHh--------hh--
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYK--------GL-- 137 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~--------g~-- 137 (383)
.|...+....+..+-....++++.|++||||+.+++.+.... +.|++.+||..-.+ +.+..-+- |+
T Consensus 193 s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~~~e~~lfG~~~g~~~ga~~ 271 (509)
T PRK05022 193 SPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-SLAESELFGHVKGAFTGAIS 271 (509)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-HHHHHHhcCccccccCCCcc
Confidence 455666667777766778888999999999999999998875 46899999997654 22322211 11
Q ss_pred -------hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCc
Q psy6129 138 -------AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKE 207 (383)
Q Consensus 138 -------~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~ 207 (383)
...|..+++||++.++.+....+.. .+.++ .+.. -|..-....++++++|+|..- .....
T Consensus 272 ~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~-------~l~~~--~~~~-~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 341 (509)
T PRK05022 272 NRSGKFELADGGTLFLDEIGELPLALQAKLLR-------VLQYG--EIQR-VGSDRSLRVDVRVIAATNRDLREEVRAGR 341 (509)
T ss_pred cCCcchhhcCCCEEEecChhhCCHHHHHHHHH-------HHhcC--CEee-CCCCcceecceEEEEecCCCHHHHHHcCC
Confidence 2457789999999999888766533 33333 2222 122223345789999998631 12345
Q ss_pred chHHHHHhccccccCCCCH
Q psy6129 208 LPENLKIQFRTVAMMVPDR 226 (383)
Q Consensus 208 lp~~l~~~fr~v~~~~Pd~ 226 (383)
+.+.|-.++..+.+..|..
T Consensus 342 f~~dL~~rl~~~~i~lPpL 360 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPL 360 (509)
T ss_pred ccHHHHhcccccEeeCCCc
Confidence 6666766676777777774
No 95
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.59 E-value=7.2e-07 Score=95.36 Aligned_cols=101 Identities=21% Similarity=0.286 Sum_probs=68.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHH---------------hhhh--hcCceEEecccc
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIY---------------KGLA--QSGSWGCFDEFN 150 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l---------------~g~~--~~g~w~~~dein 150 (383)
.+++||+|||||++++.+|+.+ +.+++.++|++..+.....+++ .++. ..++.++|||++
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEie 680 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVE 680 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehh
Confidence 3578999999999999999987 4578899998866544444443 1222 234789999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 151 RIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 151 ~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
++++++...+.+.+ .++ .+....|+.+.. .++.|++|+|.+
T Consensus 681 ka~~~v~~~Ll~il-------e~g--~l~d~~gr~vd~-rn~iiI~TSN~g 721 (857)
T PRK10865 681 KAHPDVFNILLQVL-------DDG--RLTDGQGRTVDF-RNTVVIMTSNLG 721 (857)
T ss_pred hCCHHHHHHHHHHH-------hhC--ceecCCceEEee-cccEEEEeCCcc
Confidence 99999877664433 222 222223556655 345688999974
No 96
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.58 E-value=5.3e-07 Score=94.02 Aligned_cols=145 Identities=15% Similarity=0.161 Sum_probs=95.8
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhh-----------
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKG----------- 136 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g----------- 136 (383)
.|...++...+..+.....++++.|++||||+.+++.+.+... .|++.+||..-.. +.+..-+-|
T Consensus 331 s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~-~~~~~elfg~~~~~~~~~~~ 409 (638)
T PRK11388 331 SPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD-EALAEEFLGSDRTDSENGRL 409 (638)
T ss_pred CHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh-HHHHHHhcCCCCcCccCCCC
Confidence 5566777777777777888899999999999999999987654 6899999988654 223222211
Q ss_pred -h--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCcchH
Q psy6129 137 -L--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKELPE 210 (383)
Q Consensus 137 -~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~lp~ 210 (383)
. ...|..+++||++.++.+....+.+.+ .++ .+.. .|..-...-++++++|+|.+- .....+.+
T Consensus 410 g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l-------~~~--~~~~-~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~ 479 (638)
T PRK11388 410 SKFELAHGGTLFLEKVEYLSPELQSALLQVL-------KTG--VITR-LDSRRLIPVDVRVIATTTADLAMLVEQNRFSR 479 (638)
T ss_pred CceeECCCCEEEEcChhhCCHHHHHHHHHHH-------hcC--cEEe-CCCCceEEeeEEEEEeccCCHHHHHhcCCChH
Confidence 1 245788999999999999887664433 232 2222 222222334689999988531 12234445
Q ss_pred HHHHhccccccCCCCH
Q psy6129 211 NLKIQFRTVAMMVPDR 226 (383)
Q Consensus 211 ~l~~~fr~v~~~~Pd~ 226 (383)
.|-.++..+.+..|.+
T Consensus 480 dL~~~l~~~~i~lPpL 495 (638)
T PRK11388 480 QLYYALHAFEITIPPL 495 (638)
T ss_pred HHhhhhceeEEeCCCh
Confidence 5555566666666764
No 97
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.58 E-value=1e-06 Score=92.40 Aligned_cols=129 Identities=17% Similarity=0.231 Sum_probs=85.8
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC-------CcEEEEeCCCCCCHHH--HHH--HHhhh--hhcCceEEecccccCChhh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA-------KYVVVFNCSDQMDYRG--LGR--IYKGL--AQSGSWGCFDEFNRIELPV 156 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg-------~~~~~~~c~~~~~~~~--l~~--~l~g~--~~~g~w~~~dein~l~~~~ 156 (383)
.++|+|+|||||+.+++.+++... .+...++|.......+ -+. +-.|+ ...|+.+|+||+++++++.
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~ 573 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNES 573 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHH
Confidence 456889999999999999998754 3444555554321110 011 11343 3457899999999999998
Q ss_pred HHHHHHHHHHHHHHHHhcCceeE-ecCCcEEEecCCeeEEEeeCCCCC---------CCCcchHHHHHhcccc--ccCCC
Q psy6129 157 LSVAAQQVAVVLAAKKEKKKSFV-FTDGDSIEMCPEFGIFITMNPGYA---------GRKELPENLKIQFRTV--AMMVP 224 (383)
Q Consensus 157 ls~l~~~~~~i~~~~~~~~~~~~-~~~~~~i~~~~~~~if~T~np~~~---------g~~~lp~~l~~~fr~v--~~~~P 224 (383)
.+.+.+ ++.++ .+. -..|....++..+++++|+||-+. +.-+||+.+.+||--+ -++.|
T Consensus 574 Q~aLlE-------aMEqq--tIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~ 644 (915)
T PTZ00111 574 RLSLYE-------VMEQQ--TVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHI 644 (915)
T ss_pred HHHHHH-------HHhCC--EEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCC
Confidence 776633 33332 222 235777788899999999999432 3567999999999544 34666
Q ss_pred CHH
Q psy6129 225 DRQ 227 (383)
Q Consensus 225 d~~ 227 (383)
|.+
T Consensus 645 d~~ 647 (915)
T PTZ00111 645 DQD 647 (915)
T ss_pred ChH
Confidence 643
No 98
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.57 E-value=2.8e-07 Score=87.23 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHH------HccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC-----CH-HHHHHHHhhhhh--
Q psy6129 74 TDRCYITLAQAL------TMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM-----DY-RGLGRIYKGLAQ-- 139 (383)
Q Consensus 74 t~r~~~~l~~al------~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~-----~~-~~l~~~l~g~~~-- 139 (383)
.+|....+...+ +--.+.+|.||||||||.+++++|+.+|.+++.++..+-. ++ ..+.+.+.-+..
T Consensus 128 ~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a 207 (413)
T PLN00020 128 MDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADII 207 (413)
T ss_pred HHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHh
Confidence 455555554332 2223345789999999999999999999999999888755 23 336666655432
Q ss_pred ----cCceEEecccccCChh---hHHHHH-HHH-HHHHHHHHhcCceeEecCCcE--EEecCCeeEEEeeCCCCCCCCcc
Q psy6129 140 ----SGSWGCFDEFNRIELP---VLSVAA-QQV-AVVLAAKKEKKKSFVFTDGDS--IEMCPEFGIFITMNPGYAGRKEL 208 (383)
Q Consensus 140 ----~g~w~~~dein~l~~~---~ls~l~-~~~-~~i~~~~~~~~~~~~~~~~~~--i~~~~~~~if~T~np~~~g~~~l 208 (383)
..+.+++|||+.+-.. .-+... +.+ ..+++.+ ++-..... +|.+ ..-.+...+++|.|- -..|
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~-D~p~~v~l-~G~w~~~~~~~~V~VIaTTNr----pd~L 281 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIA-DNPTNVSL-GGDWREKEEIPRVPIIVTGND----FSTL 281 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHh-cCCccccc-cccccccccCCCceEEEeCCC----cccC
Confidence 4578899999965432 111121 222 1233322 22111111 2211 122355778888884 2578
Q ss_pred hHHHHH--hccccccCCCCHHHHHHHH
Q psy6129 209 PENLKI--QFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 209 p~~l~~--~fr~v~~~~Pd~~~i~ei~ 233 (383)
++.|++ ||-.. +..||.+.-.+|+
T Consensus 282 DpALlRpGRfDk~-i~lPd~e~R~eIL 307 (413)
T PLN00020 282 YAPLIRDGRMEKF-YWAPTREDRIGVV 307 (413)
T ss_pred CHhHcCCCCCCce-eCCCCHHHHHHHH
Confidence 999988 77443 3479987655554
No 99
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.56 E-value=2e-06 Score=77.57 Aligned_cols=123 Identities=12% Similarity=0.095 Sum_probs=73.0
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhh--HHHHHH
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPV--LSVAAQ 162 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~--ls~l~~ 162 (383)
..+.+++||+|||||++++.+++.+ |.+++.++|+...+. ...++.. ......+++||+++++... ...+.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~-~~~~~lLvIDdi~~l~~~~~~~~~L~- 113 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA--DPEVLEG-LEQADLVCLDDVEAIAGQPEWQEALF- 113 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh--HHHHHhh-cccCCEEEEeChhhhcCChHHHHHHH-
Confidence 3446688999999999999999876 466778888765432 1222222 2334588999999887643 33222
Q ss_pred HHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc---ccccCCCCHHHHHHHH
Q psy6129 163 QVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR---TVAMMVPDRQIIIRVK 233 (383)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr---~v~~~~Pd~~~i~ei~ 233 (383)
.+.+...+. + ..+++|+|..........+.+.+++. .+.+..|+.+...+++
T Consensus 114 ---~~l~~~~~~--------~--------~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l 168 (226)
T TIGR03420 114 ---HLYNRVREA--------G--------GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAAL 168 (226)
T ss_pred ---HHHHHHHHc--------C--------CeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHH
Confidence 222222111 1 13566766533111122277888874 5667777766655543
No 100
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.8e-06 Score=87.79 Aligned_cols=138 Identities=13% Similarity=0.088 Sum_probs=88.9
Q ss_pred HHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCC------------------------cEEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAK------------------------YVVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~------------------------~~~~~~c~~~~~~~~l 130 (383)
...+..++..+.. .+++||+|+|||++++.+|+.++. .++.++.......+++
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddI 103 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDT 103 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHH
Confidence 3455566665543 368999999999999999999864 2344555545566667
Q ss_pred HHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 131 GRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 131 ~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
.+++..+. .....+++||+++++.+....+ +..+.+. .+...|+++++. .
T Consensus 104 Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NAL-------LKtLEEP--------------P~~v~FILaTtd----~ 158 (702)
T PRK14960 104 RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNAL-------LKTLEEP--------------PEHVKFLFATTD----P 158 (702)
T ss_pred HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHH-------HHHHhcC--------------CCCcEEEEEECC----h
Confidence 66665432 2345778899999988754433 2222221 122344444442 2
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCC
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFL 240 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~ 240 (383)
..+|..+++|+..+.+..++...+.+.+ +...|..
T Consensus 159 ~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 159 QKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 4678899999999999988887776554 3345544
No 101
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=1.4e-06 Score=89.35 Aligned_cols=130 Identities=17% Similarity=0.202 Sum_probs=85.5
Q ss_pred HHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l 130 (383)
...+..++..+.- .+++||+|+|||++++.+|+.++.. ++.++....+..+++
T Consensus 25 v~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~Vddi 104 (647)
T PRK07994 25 LTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDT 104 (647)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHH
Confidence 3455666766544 3578999999999999999988652 233444434555666
Q ss_pred HHHHhhhh---hcC--ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEE-eeCCCCCC
Q psy6129 131 GRIYKGLA---QSG--SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFI-TMNPGYAG 204 (383)
Q Consensus 131 ~~~l~g~~---~~g--~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~-T~np~~~g 204 (383)
..++..+. ..| ..+++||+++++.+....+ ++.+.+- .+++.|++ |.++
T Consensus 105 R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NAL-------LKtLEEP--------------p~~v~FIL~Tt~~---- 159 (647)
T PRK07994 105 RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNAL-------LKTLEEP--------------PEHVKFLLATTDP---- 159 (647)
T ss_pred HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHH-------HHHHHcC--------------CCCeEEEEecCCc----
Confidence 66654432 223 3677899999988765543 3222221 12333444 4443
Q ss_pred CCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 205 RKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 205 ~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
..|++.+++|+..+.+..++.+.+.+.+
T Consensus 160 -~kLl~TI~SRC~~~~f~~Ls~~ei~~~L 187 (647)
T PRK07994 160 -QKLPVTILSRCLQFHLKALDVEQIRQQL 187 (647)
T ss_pred -cccchHHHhhheEeeCCCCCHHHHHHHH
Confidence 4799999999999999999988877655
No 102
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.54 E-value=3.5e-06 Score=83.69 Aligned_cols=149 Identities=12% Similarity=0.125 Sum_probs=82.0
Q ss_pred ceeechhhHHHHHHHHHHHHc-c--CCCCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHHHHHHH-----
Q psy6129 67 RLVITPLTDRCYITLAQALTM-S--MGGSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRGLGRI----- 133 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~-~--~~~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~~l~~~----- 133 (383)
.+|.+|....++......... + .+.+++||+|+|||++++++|+.+ +..++.++|..-+. ..+..+
T Consensus 106 nFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~-~~~~~~~~~~~ 184 (440)
T PRK14088 106 NFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMKEGKL 184 (440)
T ss_pred ccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHhcccH
Confidence 356666655555444433321 1 245689999999999999999876 34556666643111 001100
Q ss_pred --Hhhhh-hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchH
Q psy6129 134 --YKGLA-QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPE 210 (383)
Q Consensus 134 --l~g~~-~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~ 210 (383)
+.... ....++++||++.+.... ...+.+..+.+.+.+.+ ..+++|+|-.-..-..+.+
T Consensus 185 ~~f~~~~~~~~dvLlIDDi~~l~~~~--~~q~elf~~~n~l~~~~----------------k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 185 NEFREKYRKKVDVLLIDDVQFLIGKT--GVQTELFHTFNELHDSG----------------KQIVICSDREPQKLSEFQD 246 (440)
T ss_pred HHHHHHHHhcCCEEEEechhhhcCcH--HHHHHHHHHHHHHHHcC----------------CeEEEECCCCHHHHHHHHH
Confidence 01111 245689999999664321 11122222333333321 1244554321111234677
Q ss_pred HHHHhcc---ccccCCCCHHHHHHHHH
Q psy6129 211 NLKIQFR---TVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 211 ~l~~~fr---~v~~~~Pd~~~i~ei~l 234 (383)
++++||. .+.+..||.+...+++.
T Consensus 247 rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 247 RLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred HHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 8999997 77889999888777764
No 103
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.9e-06 Score=85.48 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=88.9
Q ss_pred HHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHHH
Q psy6129 79 ITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGLG 131 (383)
Q Consensus 79 ~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l~ 131 (383)
..+..++..+... +++||+|+|||++++.+|+.+... ++.++....+..+++.
T Consensus 26 ~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR 105 (509)
T PRK14958 26 RALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTR 105 (509)
T ss_pred HHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHH
Confidence 3555666554332 578999999999999999988532 4556666667777777
Q ss_pred HHHhhhh---h--cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCC
Q psy6129 132 RIYKGLA---Q--SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRK 206 (383)
Q Consensus 132 ~~l~g~~---~--~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~ 206 (383)
.++..+. . ...++++||++++..+..+.+ +..+.+- .+.+.|+++++. ..
T Consensus 106 ~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naL-------Lk~LEep--------------p~~~~fIlattd----~~ 160 (509)
T PRK14958 106 ELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNAL-------LKTLEEP--------------PSHVKFILATTD----HH 160 (509)
T ss_pred HHHHHHhhccccCCcEEEEEEChHhcCHHHHHHH-------HHHHhcc--------------CCCeEEEEEECC----hH
Confidence 7766542 2 234788999999988764433 2222111 123444444432 25
Q ss_pred cchHHHHHhccccccCCCCHHHHHHH---HHhhcCCC
Q psy6129 207 ELPENLKIQFRTVAMMVPDRQIIIRV---KLASCGFL 240 (383)
Q Consensus 207 ~lp~~l~~~fr~v~~~~Pd~~~i~ei---~l~~~gf~ 240 (383)
.+|..+++++..+.+..++...+.+. .+...|..
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 68888999999999988777766553 34455654
No 104
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.54 E-value=4.6e-06 Score=83.30 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=85.2
Q ss_pred ceeechhhHHHHHHHHHHHHc----cCCCCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHHHHHH-----
Q psy6129 67 RLVITPLTDRCYITLAQALTM----SMGGSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRGLGR----- 132 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~----~~~~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~~l~~----- 132 (383)
.+|..+....++..+...... ..+.+++||+|+|||++++++|+.+ +..++.++|..-++. ....
T Consensus 123 ~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~ 201 (450)
T PRK00149 123 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND-FVNALRNNT 201 (450)
T ss_pred ccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHHcCc
Confidence 456666544454444333322 1234578999999999999999987 444667777543211 1111
Q ss_pred --HHhhhhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchH
Q psy6129 133 --IYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPE 210 (383)
Q Consensus 133 --~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~ 210 (383)
-+......-..+++||++.+...- ...+.+..+.+.+.+.+ -.+++|+|-....-..+.+
T Consensus 202 ~~~~~~~~~~~dlLiiDDi~~l~~~~--~~~~~l~~~~n~l~~~~----------------~~iiits~~~p~~l~~l~~ 263 (450)
T PRK00149 202 MEEFKEKYRSVDVLLIDDIQFLAGKE--RTQEEFFHTFNALHEAG----------------KQIVLTSDRPPKELPGLEE 263 (450)
T ss_pred HHHHHHHHhcCCEEEEehhhhhcCCH--HHHHHHHHHHHHHHHCC----------------CcEEEECCCCHHHHHHHHH
Confidence 111223345689999999775432 11122333333333321 1245555532111123778
Q ss_pred HHHHhcc---ccccCCCCHHHHHHHHHh
Q psy6129 211 NLKIQFR---TVAMMVPDRQIIIRVKLA 235 (383)
Q Consensus 211 ~l~~~fr---~v~~~~Pd~~~i~ei~l~ 235 (383)
+++++|. .+.+..||.+...+++-.
T Consensus 264 ~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 264 RLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred HHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 8999995 688899999887777643
No 105
>KOG0482|consensus
Probab=98.53 E-value=1.5e-06 Score=84.19 Aligned_cols=265 Identities=20% Similarity=0.260 Sum_probs=153.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEE-eCCCC--CCHHHHHHH------Hhh---hhhcCceEEecccccCChhhHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVF-NCSDQ--MDYRGLGRI------YKG---LAQSGSWGCFDEFNRIELPVLS 158 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~-~c~~~--~~~~~l~~~------l~g---~~~~g~w~~~dein~l~~~~ls 158 (383)
++|.|.||+.|+.+.+.+.+...|-.|+- ..|++ ++..-+..- +.| +...|+.+|+|||+++...-..
T Consensus 378 icLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt 457 (721)
T KOG0482|consen 378 ICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRT 457 (721)
T ss_pred EEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhH
Confidence 45789999999999999999888776654 34443 344434332 333 2466889999999988775433
Q ss_pred HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCC---------CCcchHHHHHhcccccc--CCCCHH
Q psy6129 159 VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAG---------RKELPENLKIQFRTVAM--MVPDRQ 227 (383)
Q Consensus 159 ~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g---------~~~lp~~l~~~fr~v~~--~~Pd~~ 227 (383)
++ .+++ +.+..-+-..|-.-.++..+.|.++.||.|+- .-.||.+|.++|-.+.+ +.||.+
T Consensus 458 AI----HEVM----EQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd 529 (721)
T KOG0482|consen 458 AI----HEVM----EQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRD 529 (721)
T ss_pred HH----HHHH----HhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCccc
Confidence 32 1222 11111011234455677889999999997632 23689999999987665 567732
Q ss_pred ---HHHH----HHHhh----cCC--------------------CchHHHHHHHHHHHHHHHHhc-cCCCCCccChhhhHH
Q psy6129 228 ---IIIR----VKLAS----CGF--------------------LENITLARKFYTLYKLCEEQL-TKQVHYDFGLRNILS 275 (383)
Q Consensus 228 ---~i~e----i~l~~----~gf--------------------~~~~~la~ki~~~~~~~~~~l-s~~~hy~f~lR~l~~ 275 (383)
.+++ ++... .+| .-+..|++.++..|..++..- +++.+---+.|.+..
T Consensus 530 ~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~ 609 (721)
T KOG0482|consen 530 NDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLG 609 (721)
T ss_pred chHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHH
Confidence 1222 22111 122 234678889999987666443 233332237999999
Q ss_pred HHHhcchhhccC-CCChHHHHHHHHHHHhhcCCCC--CCC--------hHHHHHHHHhhCCCCCCCCCChhHHHHHHHHH
Q psy6129 276 VLRSLGAAKRVN-SRDTESTIVMRVLRDMNLSKLI--DED--------EPLFISLVADLFPNQALEKTAYPALEGAIQEQ 344 (383)
Q Consensus 276 vi~~~~~~~~~~-~~~~e~~~~~~a~~~~~~~~l~--~~d--------~~~f~~li~~~Fp~~~~~~~~~~~~~~~i~~~ 344 (383)
+++...++.|-. .+.-|+.-+-+|+|-+-++|.. .+| ......++.++...-......+ +.+.+.
T Consensus 610 IlRls~AlarLRls~~V~~~DV~EALRLme~sK~sL~~~~~~~~~~~~~~~if~iirel~~e~g~~~v~~----s~~~~r 685 (721)
T KOG0482|consen 610 ILRLSTALARLRLSDSVEEDDVNEALRLMEMSKDSLYQDDGQKEDTSATDAIFAIIRELAGEGGKRCVKL----SNAEQR 685 (721)
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHhhhcccccccccccccchHHHHHHHHHHHHhhcCCceeeH----HHHHHH
Confidence 999776554332 1222333355566654444432 221 1223445555543111111112 345556
Q ss_pred HHHcCCccCHHHHHHHHHHHHHHhc
Q psy6129 345 CEAAGLIFHPPWVLKLIQLYETQRV 369 (383)
Q Consensus 345 ~~~~~l~~~~~~i~kv~~l~~~l~~ 369 (383)
|...|+ ++..+.++++=|..+++
T Consensus 686 ~~~kGf--s~~ql~~~i~ey~~lnV 708 (721)
T KOG0482|consen 686 CVRKGF--SEAQLKKCIDEYAELNV 708 (721)
T ss_pred HHHcCC--CHHHHHHHHHHHHhcCe
Confidence 666665 46778888888887754
No 106
>KOG0736|consensus
Probab=98.52 E-value=1.9e-06 Score=87.38 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=58.1
Q ss_pred HHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC------CCCHHHHHHHHhhhh-hcCceEEecccccCCh
Q psy6129 83 QALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD------QMDYRGLGRIYKGLA-QSGSWGCFDEFNRIEL 154 (383)
Q Consensus 83 ~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~------~~~~~~l~~~l~g~~-~~g~w~~~dein~l~~ 154 (383)
+.++-..|++|+||||||||-++|++|..+...++.+...+ +-+.+.+.+++.-|. .+.+.++|||+|.+.+
T Consensus 700 sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP 778 (953)
T KOG0736|consen 700 SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAP 778 (953)
T ss_pred ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCc
Confidence 34555678889999999999999999999999998886555 445666888887764 4678899999998855
No 107
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.52 E-value=1.6e-06 Score=84.98 Aligned_cols=145 Identities=17% Similarity=0.233 Sum_probs=100.8
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCC---cEEEEeCCCCCCHHHHHHHH--------hhh--
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAK---YVVVFNCSDQMDYRGLGRIY--------KGL-- 137 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~---~~~~~~c~~~~~~~~l~~~l--------~g~-- 137 (383)
+|...+.+..+-..-.+..++++.|++||||-..++++-+.-.| |++.+||..-.. +-+..-+ .|+
T Consensus 147 S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-~l~ESELFGhekGAFTGA~~ 225 (464)
T COG2204 147 SPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-NLLESELFGHEKGAFTGAIT 225 (464)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-HHHHHHhhcccccCcCCccc
Confidence 56677777787777778889999999999999999988777654 999999976543 3343322 232
Q ss_pred -------hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCc
Q psy6129 138 -------AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKE 207 (383)
Q Consensus 138 -------~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~ 207 (383)
...|+.+++|||-.+|.++..-+ ++.+.++ .+.. -|..-++.-+.+|++++|-+- .....
T Consensus 226 ~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kL-------LRvLqe~--~~~r-vG~~~~i~vdvRiIaaT~~dL~~~v~~G~ 295 (464)
T COG2204 226 RRIGRFEQANGGTLFLDEIGEMPLELQVKL-------LRVLQER--EFER-VGGNKPIKVDVRIIAATNRDLEEEVAAGR 295 (464)
T ss_pred ccCcceeEcCCceEEeeccccCCHHHHHHH-------HHHHHcC--eeEe-cCCCcccceeeEEEeecCcCHHHHHHcCC
Confidence 24688999999999999887654 5666665 3333 233333345799999998521 12234
Q ss_pred chHHHHHhccccccCCCCH
Q psy6129 208 LPENLKIQFRTVAMMVPDR 226 (383)
Q Consensus 208 lp~~l~~~fr~v~~~~Pd~ 226 (383)
+-+.|--++..+.+..|..
T Consensus 296 FReDLyyRLnV~~i~iPpL 314 (464)
T COG2204 296 FREDLYYRLNVVPLRLPPL 314 (464)
T ss_pred cHHHHHhhhccceecCCcc
Confidence 5556666667788877773
No 108
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.51 E-value=4.1e-07 Score=94.46 Aligned_cols=133 Identities=18% Similarity=0.151 Sum_probs=83.5
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCC------CCHHHHHHHHhhhh-hcCceEEecccccCChhhHH--
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQ------MDYRGLGRIYKGLA-QSGSWGCFDEFNRIELPVLS-- 158 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~------~~~~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls-- 158 (383)
..+.+++||+|||||++++.+|+.+|.+++.++++.. .....+..++.-+. ...+++++||++.+...--+
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~ 264 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL 264 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCC
Confidence 3456789999999999999999999999999998752 23344555555443 35679999999876321100
Q ss_pred -HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHHH
Q psy6129 159 -VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIRV 232 (383)
Q Consensus 159 -~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ei 232 (383)
.........++.+...-..+ .-++.+.+++|+|+. ..|++++++ || |.+.+..||.+.-.+|
T Consensus 265 ~g~~~~~~~~ln~lL~~mdg~--------~~~~~vivIaaTN~p----~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~I 330 (644)
T PRK10733 265 GGGHDEREQTLNQMLVEMDGF--------EGNEGIIVIAATNRP----DVLDPALLRPGRFDRQVVVGLPDVRGREQI 330 (644)
T ss_pred CCCchHHHHHHHHHHHhhhcc--------cCCCCeeEEEecCCh----hhcCHHHhCCcccceEEEcCCCCHHHHHHH
Confidence 00000011111111110011 113457788899963 478888885 77 8899999996554444
No 109
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.4e-07 Score=92.63 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=86.4
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChhhHH
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELPVLS 158 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls 158 (383)
....+.+|+||||||||.+++++|..++.+++.+..++-++ ...+.+++.-+. ...++++|||++.+-..--.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~ 353 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP 353 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCC
Confidence 34456789999999999999999999999999999884332 222444555454 67899999999966332110
Q ss_pred ----HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHH
Q psy6129 159 ----VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIR 231 (383)
Q Consensus 159 ----~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~e 231 (383)
.....+.+++..+. + . ....++.++++.|.. ..+++++++ +| +.+++..||...-.+
T Consensus 354 ~~~~~~~r~~~~lL~~~d-~---~--------e~~~~v~vi~aTN~p----~~ld~a~lR~gRfd~~i~v~~pd~~~r~~ 417 (494)
T COG0464 354 SEDGSGRRVVGQLLTELD-G---I--------EKAEGVLVIAATNRP----DDLDPALLRPGRFDRLIYVPLPDLEERLE 417 (494)
T ss_pred CCchHHHHHHHHHHHHhc-C---C--------CccCceEEEecCCCc----cccCHhhcccCccceEeecCCCCHHHHHH
Confidence 00011111222211 1 0 011335678888864 578888888 88 567889999877666
Q ss_pred HHH
Q psy6129 232 VKL 234 (383)
Q Consensus 232 i~l 234 (383)
+..
T Consensus 418 i~~ 420 (494)
T COG0464 418 IFK 420 (494)
T ss_pred HHH
Confidence 543
No 110
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.50 E-value=8.9e-07 Score=88.99 Aligned_cols=144 Identities=14% Similarity=0.160 Sum_probs=94.7
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhh----h------
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKG----L------ 137 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g----~------ 137 (383)
++...+....+..+.....++++.|++||||+.+++.+.+... .|++.+||..- +.+.+...+-| +
T Consensus 144 s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~-~~~~~~~~lfg~~~g~~~~~~~ 222 (469)
T PRK10923 144 APAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI-PKDLIESELFGHEKGAFTGANT 222 (469)
T ss_pred CHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCC-CHHHHHHHhcCCCCCCCCCCCc
Confidence 3445555555555556777888999999999999999888764 58999999876 33444444322 1
Q ss_pred -------hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC---CCCc
Q psy6129 138 -------AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA---GRKE 207 (383)
Q Consensus 138 -------~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~---g~~~ 207 (383)
...|+.+++||++.++.+....+.+. +.++ .+.. .|..-...-++++++|++..-. ....
T Consensus 223 ~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~-------l~~~--~~~~-~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 292 (469)
T PRK10923 223 IRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRV-------LADG--QFYR-VGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 (469)
T ss_pred CCCCCeeECCCCEEEEeccccCCHHHHHHHHHH-------HhcC--cEEe-CCCCCeEEeeEEEEEeCCCCHHHHHHcCC
Confidence 23467889999999999887765433 3332 2222 1222233457899999986321 1345
Q ss_pred chHHHHHhccccccCCCC
Q psy6129 208 LPENLKIQFRTVAMMVPD 225 (383)
Q Consensus 208 lp~~l~~~fr~v~~~~Pd 225 (383)
+.+.|..++..+.+..|.
T Consensus 293 ~~~~L~~~l~~~~i~~Pp 310 (469)
T PRK10923 293 FREDLFHRLNVIRVHLPP 310 (469)
T ss_pred chHHHHHHhcceeecCCC
Confidence 667777888777776666
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.50 E-value=1.9e-07 Score=90.61 Aligned_cols=129 Identities=20% Similarity=0.212 Sum_probs=77.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH------HHHHHHHhhhh-hcCceEEecccccCChhhH----
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY------RGLGRIYKGLA-QSGSWGCFDEFNRIELPVL---- 157 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~------~~l~~~l~g~~-~~g~w~~~dein~l~~~~l---- 157 (383)
.+.+++||+|||||++++++|+.++.+++.+.++..... ..+..++.-+. ...+.+++||++.+...-.
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~ 236 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGT 236 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCC
Confidence 456789999999999999999999999888765542210 11222222222 2356899999997632100
Q ss_pred ---HHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHH
Q psy6129 158 ---SVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIR 231 (383)
Q Consensus 158 ---s~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~e 231 (383)
......+..++..+. .+ .-.+++.+++|+|.. ..+++++.+ +| +.+.+..|+.+.-.+
T Consensus 237 ~~~~~~~~~l~~ll~~ld----~~--------~~~~~v~vI~ttn~~----~~ld~al~r~grfd~~i~v~~P~~~~r~~ 300 (364)
T TIGR01242 237 SGDREVQRTLMQLLAELD----GF--------DPRGNVKVIAATNRP----DILDPALLRPGRFDRIIEVPLPDFEGRLE 300 (364)
T ss_pred CccHHHHHHHHHHHHHhh----CC--------CCCCCEEEEEecCCh----hhCChhhcCcccCceEEEeCCcCHHHHHH
Confidence 001111111222111 11 012457788999853 468888875 55 578889999776655
Q ss_pred HH
Q psy6129 232 VK 233 (383)
Q Consensus 232 i~ 233 (383)
++
T Consensus 301 Il 302 (364)
T TIGR01242 301 IL 302 (364)
T ss_pred HH
Confidence 54
No 112
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=4.1e-06 Score=84.25 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=89.5
Q ss_pred HHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC-----------------------cEEEEeCCCCCCHHHHH
Q psy6129 78 YITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK-----------------------YVVVFNCSDQMDYRGLG 131 (383)
Q Consensus 78 ~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~-----------------------~~~~~~c~~~~~~~~l~ 131 (383)
...+..++..+..+ +++||+|||||++++.+|+.+.. .++.++.+.......+.
T Consensus 23 ~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR 102 (504)
T PRK14963 23 KEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVR 102 (504)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHH
Confidence 44555666666554 68999999999999999998842 14555665555555555
Q ss_pred HHHhhh-----hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCC
Q psy6129 132 RIYKGL-----AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRK 206 (383)
Q Consensus 132 ~~l~g~-----~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~ 206 (383)
.+..-+ .....++++||++++..+.+..+ ++.+.+. .+++.+++++|. ..
T Consensus 103 ~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naL-------Lk~LEep--------------~~~t~~Il~t~~----~~ 157 (504)
T PRK14963 103 DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNAL-------LKTLEEP--------------PEHVIFILATTE----PE 157 (504)
T ss_pred HHHHHHhhccccCCCeEEEEECccccCHHHHHHH-------HHHHHhC--------------CCCEEEEEEcCC----hh
Confidence 543322 22345788999998876654433 2222221 123444444442 25
Q ss_pred cchHHHHHhccccccCCCCHHHHHHHHH---hhcCCCch
Q psy6129 207 ELPENLKIQFRTVAMMVPDRQIIIRVKL---ASCGFLEN 242 (383)
Q Consensus 207 ~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~~~gf~~~ 242 (383)
.+++.++++++.+.+..|+...+.+.+. ...|..-.
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~ 196 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE 196 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 8899999999999999999888766553 35676533
No 113
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=3.3e-06 Score=85.25 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=83.8
Q ss_pred HHHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCC------------------------cEEEEeCCCCCCHHH
Q psy6129 77 CYITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAK------------------------YVVVFNCSDQMDYRG 129 (383)
Q Consensus 77 ~~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~------------------------~~~~~~c~~~~~~~~ 129 (383)
....+..++..+.. .+++||+|+|||++++.+|+.+.. .++.++.......++
T Consensus 24 ~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ 103 (546)
T PRK14957 24 ALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEE 103 (546)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHH
Confidence 34456677776554 347899999999999999998853 233344444455555
Q ss_pred HHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCee-EEEeeCCCCC
Q psy6129 130 LGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFG-IFITMNPGYA 203 (383)
Q Consensus 130 l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-if~T~np~~~ 203 (383)
+..++..+. .....+++||+++++.+....+ +..+.+. .+.+. |++|.+
T Consensus 104 ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naL-------LK~LEep--------------p~~v~fIL~Ttd---- 158 (546)
T PRK14957 104 TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNAL-------LKTLEEP--------------PEYVKFILATTD---- 158 (546)
T ss_pred HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHH-------HHHHhcC--------------CCCceEEEEECC----
Confidence 555554332 1234778899999887755443 2222221 12233 445544
Q ss_pred CCCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 204 GRKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 204 g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
.+.++..+++++..+.+..++...+.+.+
T Consensus 159 -~~kil~tI~SRc~~~~f~~Ls~~eI~~~L 187 (546)
T PRK14957 159 -YHKIPVTILSRCIQLHLKHISQADIKDQL 187 (546)
T ss_pred -hhhhhhhHHHheeeEEeCCCCHHHHHHHH
Confidence 25678789999999999999887776544
No 114
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.49 E-value=2.7e-07 Score=88.89 Aligned_cols=174 Identities=16% Similarity=0.204 Sum_probs=105.0
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCCCCCHHHHHHHH---hhh-------------hhcCceEE
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSDQMDYRGLGRIY---KGL-------------AQSGSWGC 145 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~~~~~~~l~~~l---~g~-------------~~~g~w~~ 145 (383)
-.+.++++.|++||||+..++.+...- +-|++.|||..-...-....++ +|+ ...|+.++
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLf 178 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLF 178 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEe
Confidence 456778899999999999998766443 4589999999866544333333 232 35688999
Q ss_pred ecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH------hcccc
Q psy6129 146 FDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI------QFRTV 219 (383)
Q Consensus 146 ~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~------~fr~v 219 (383)
+||+.++|++....+. +.+.++ .+.. -|..-....+++++++.| ..+++.+.. +..++
T Consensus 179 LDEI~~LP~~~Q~kLl-------~~le~g--~~~r-vG~~~~~~~dVRli~AT~------~~l~~~~~~g~dl~~rl~~~ 242 (403)
T COG1221 179 LDEIHRLPPEGQEKLL-------RVLEEG--EYRR-VGGSQPRPVDVRLICATT------EDLEEAVLAGADLTRRLNIL 242 (403)
T ss_pred hhhhhhCCHhHHHHHH-------HHHHcC--ceEe-cCCCCCcCCCceeeeccc------cCHHHHHHhhcchhhhhcCc
Confidence 9999999999876653 333332 3433 243445567888888876 355555554 23356
Q ss_pred ccCCCCHH-HHHHHHHhhcCCCchHHHHHHH----HHH-HHHHHHhccCCCCCcc--ChhhhHHHHHhcc
Q psy6129 220 AMMVPDRQ-IIIRVKLASCGFLENITLARKF----YTL-YKLCEEQLTKQVHYDF--GLRNILSVLRSLG 281 (383)
Q Consensus 220 ~~~~Pd~~-~i~ei~l~~~gf~~~~~la~ki----~~~-~~~~~~~ls~~~hy~f--~lR~l~~vi~~~~ 281 (383)
.+..|+.. .-.+|.++..+|-.. .+.++ ... ....+.. .+|+| |.|++++++..+-
T Consensus 243 ~I~LPpLrER~~Di~~L~e~Fl~~--~~~~l~~~~~~~~~~a~~~L----~~y~~pGNirELkN~Ve~~~ 306 (403)
T COG1221 243 TITLPPLRERKEDILLLAEHFLKS--EARRLGLPLSVDSPEALRAL----LAYDWPGNIRELKNLVERAV 306 (403)
T ss_pred eecCCChhhchhhHHHHHHHHHHH--HHHHcCCCCCCCCHHHHHHH----HhCCCCCcHHHHHHHHHHHH
Confidence 66778753 244455444444211 11110 000 0111111 36777 6889888887653
No 115
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.49 E-value=1.1e-06 Score=86.77 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=80.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhh---hh--cCceEEecccccCChhhHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGL---AQ--SGSWGCFDEFNRIELPVLSVAAQQVA 165 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~---~~--~g~w~~~dein~l~~~~ls~l~~~~~ 165 (383)
.+++||+|||||++++.+|+.++..++.+++... ..+.+..++..+ .. .+..+++||++++.......+
T Consensus 39 ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~L----- 112 (413)
T PRK13342 39 MILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDAL----- 112 (413)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHH-----
Confidence 4578999999999999999999999999998754 344555555443 12 557889999998876654332
Q ss_pred HHHHHHHhcCceeEecCCcEEEecCCeeEEEe--eCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHH
Q psy6129 166 VVLAAKKEKKKSFVFTDGDSIEMCPEFGIFIT--MNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T--~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l 234 (383)
+..+ + ++. +.++++ .||. ..+++.++++++.+.+..++.+.+.+++.
T Consensus 113 --L~~l-e--------~~~-------iilI~att~n~~----~~l~~aL~SR~~~~~~~~ls~e~i~~lL~ 161 (413)
T PRK13342 113 --LPHV-E--------DGT-------ITLIGATTENPS----FEVNPALLSRAQVFELKPLSEEDIEQLLK 161 (413)
T ss_pred --HHHh-h--------cCc-------EEEEEeCCCChh----hhccHHHhccceeeEeCCCCHHHHHHHHH
Confidence 2111 1 111 223333 2432 46889999999999999988877766553
No 116
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=3.8e-06 Score=84.23 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=87.2
Q ss_pred HHHHHHHHccC---CCCCcCCCCCCccHHHHHHHHHhCCc----------------------------EEEEeCCCCCCH
Q psy6129 79 ITLAQALTMSM---GGSPCGPAGTGKTETVKDMGKTLAKY----------------------------VVVFNCSDQMDY 127 (383)
Q Consensus 79 ~~l~~al~~~~---~~~l~Gp~GtGKT~~i~~la~~lg~~----------------------------~~~~~c~~~~~~ 127 (383)
..+..++..+. ..+++||+|||||++++.+|+.++.. ++.++..+.+..
T Consensus 31 ~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~v 110 (507)
T PRK06645 31 KVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSV 110 (507)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCH
Confidence 45555565554 35689999999999999999998531 233344455566
Q ss_pred HHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC
Q psy6129 128 RGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY 202 (383)
Q Consensus 128 ~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~ 202 (383)
+++..++..+. .....+++||+++++.+....+ +..+.+. .+.+.|+++++
T Consensus 111 d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naL-------Lk~LEep--------------p~~~vfI~aTt--- 166 (507)
T PRK06645 111 DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNAL-------LKTLEEP--------------PPHIIFIFATT--- 166 (507)
T ss_pred HHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHH-------HHHHhhc--------------CCCEEEEEEeC---
Confidence 66777665542 2345778999999887554433 2222111 12333433333
Q ss_pred CCCCcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCC
Q psy6129 203 AGRKELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFL 240 (383)
Q Consensus 203 ~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~ 240 (383)
..+.+|..+++++..+.+..++.+.+.+.+ +...|..
T Consensus 167 -e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 167 -EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred -ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 135799999999999999888887766554 3445654
No 117
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.49 E-value=2.3e-06 Score=77.91 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=84.2
Q ss_pred ceeechhhHHHHHHHHHHHHcc--CCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhhhhhcC
Q psy6129 67 RLVITPLTDRCYITLAQALTMS--MGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKGLAQSG 141 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~~--~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g~~~~g 141 (383)
.++.. .....+..+..+.... .+.+++||+|||||++++++++.+. ..+..++++...+. ....+++... -
T Consensus 23 ~f~~~-~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--~~~~~~~~~~-~ 98 (235)
T PRK08084 23 SFYPG-DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--VPEVLEGMEQ-L 98 (235)
T ss_pred ccccC-ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--hHHHHHHhhh-C
Confidence 45555 3344444444443322 2346899999999999999988654 44555565442221 2233333322 2
Q ss_pred ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc---cc
Q psy6129 142 SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF---RT 218 (383)
Q Consensus 142 ~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f---r~ 218 (383)
.++++||++.++.+. ...+.+..+.+...+.+ ...+++|.+.....-..+.+.|++|+ ..
T Consensus 99 dlliiDdi~~~~~~~--~~~~~lf~l~n~~~e~g---------------~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~ 161 (235)
T PRK08084 99 SLVCIDNIECIAGDE--LWEMAIFDLYNRILESG---------------RTRLLITGDRPPRQLNLGLPDLASRLDWGQI 161 (235)
T ss_pred CEEEEeChhhhcCCH--HHHHHHHHHHHHHHHcC---------------CCeEEEeCCCChHHcCcccHHHHHHHhCCce
Confidence 588999999876432 11122223333332221 12345555533333345678999999 68
Q ss_pred cccCCCCHHHHHHHHH
Q psy6129 219 VAMMVPDRQIIIRVKL 234 (383)
Q Consensus 219 v~~~~Pd~~~i~ei~l 234 (383)
+.+..||.+...+++.
T Consensus 162 ~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 162 YKLQPLSDEEKLQALQ 177 (235)
T ss_pred eeecCCCHHHHHHHHH
Confidence 8999999887777653
No 118
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.49 E-value=3.6e-05 Score=76.40 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=83.8
Q ss_pred ceeechhhHHHHHHHHHHHHc---------cCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHH--
Q psy6129 67 RLVITPLTDRCYITLAQALTM---------SMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGR-- 132 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~---------~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~-- 132 (383)
.+|..+....++.. ..++.. ..+.+++||+|+|||++++++++.+ |..++.+++..-++ .+..
T Consensus 112 nFv~g~~N~~a~~~-a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~--~~~~~l 188 (445)
T PRK12422 112 NFLVTPENDLPHRI-LQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE--HLVSAI 188 (445)
T ss_pred ceeeCCcHHHHHHH-HHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH--HHHHHH
Confidence 46766655544433 333321 1345689999999999999999876 55565555432111 1111
Q ss_pred ------HHhhhhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCC
Q psy6129 133 ------IYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRK 206 (383)
Q Consensus 133 ------~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~ 206 (383)
.++.....-..+++||++.+...- ...+.+..+.+.+.+. | -.+++|+|..-..-.
T Consensus 189 ~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~--~~qeelf~l~N~l~~~--------~--------k~IIlts~~~p~~l~ 250 (445)
T PRK12422 189 RSGEMQRFRQFYRNVDALFIEDIEVFSGKG--ATQEEFFHTFNSLHTE--------G--------KLIVISSTCAPQDLK 250 (445)
T ss_pred hcchHHHHHHHcccCCEEEEcchhhhcCCh--hhHHHHHHHHHHHHHC--------C--------CcEEEecCCCHHHHh
Confidence 111223345588999999875432 1122233333333321 1 135566652111113
Q ss_pred cchHHHHHhc---cccccCCCCHHHHHHHHH
Q psy6129 207 ELPENLKIQF---RTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 207 ~lp~~l~~~f---r~v~~~~Pd~~~i~ei~l 234 (383)
.+.+++++|| -.+.+..||.+...+++.
T Consensus 251 ~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 251 AMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred hhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 5788999999 477889999888776654
No 119
>KOG0478|consensus
Probab=98.48 E-value=4.5e-07 Score=90.68 Aligned_cols=129 Identities=20% Similarity=0.294 Sum_probs=85.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHH----------HHH--hhh--hhcCceEEecccccCCh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLG----------RIY--KGL--AQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~----------~~l--~g~--~~~g~w~~~dein~l~~ 154 (383)
...+|+|.||||||.+++..++.+-+=.|+= ....+...+. +++ .|+ +..|+.+|+||||+++.
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTS--GkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d 540 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTS--GKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD 540 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeec--CCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhH
Confidence 3456899999999999999999998765532 1111111121 111 243 56788999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC---CCC------CCcchHHHHHhcccccc--CC
Q psy6129 155 PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG---YAG------RKELPENLKIQFRTVAM--MV 223 (383)
Q Consensus 155 ~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~---~~g------~~~lp~~l~~~fr~v~~--~~ 223 (383)
...|++-+-. +.++.-+-..|-.-.++..+.++++.||- |.- .-.||+.|.++|--|++ +.
T Consensus 541 StrSvLhEvM--------EQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~ 612 (804)
T KOG0478|consen 541 STRSVLHEVM--------EQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDK 612 (804)
T ss_pred HHHHHHHHHH--------HHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecC
Confidence 8877764322 22211111245455677889999999993 321 23689999999988775 67
Q ss_pred CCHH
Q psy6129 224 PDRQ 227 (383)
Q Consensus 224 Pd~~ 227 (383)
||..
T Consensus 613 ~DE~ 616 (804)
T KOG0478|consen 613 PDER 616 (804)
T ss_pred cchh
Confidence 7755
No 120
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.48 E-value=1.1e-06 Score=89.19 Aligned_cols=145 Identities=15% Similarity=0.185 Sum_probs=91.1
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHH-------------
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIY------------- 134 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l------------- 134 (383)
.|...++...+-.+-....++++.|++||||+.+++++-... +.|++.+||..-.+ +.+...+
T Consensus 210 s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~-~~~e~elFG~~~~~~~~~~~ 288 (520)
T PRK10820 210 SPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD-DVVESELFGHAPGAYPNALE 288 (520)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH-HHHHHHhcCCCCCCcCCccc
Confidence 334455555555555677888999999999999999875544 36899999987543 3333222
Q ss_pred --hhh--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCc
Q psy6129 135 --KGL--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKE 207 (383)
Q Consensus 135 --~g~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~ 207 (383)
.|. ...|..+++||++.++.+....+.+. +.++ .+.. .|..-..+.++++++|++..- .....
T Consensus 289 ~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~-------l~~~--~~~~-~g~~~~~~~~vRiI~st~~~l~~l~~~g~ 358 (520)
T PRK10820 289 GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF-------LNDG--TFRR-VGEDHEVHVDVRVICATQKNLVELVQKGE 358 (520)
T ss_pred CCCChhhhcCCCEEEEeChhhCCHHHHHHHHHH-------HhcC--Cccc-CCCCcceeeeeEEEEecCCCHHHHHHcCC
Confidence 121 13477899999999999887665433 2332 2221 232222345688998876421 12234
Q ss_pred chHHHHHhccccccCCCCH
Q psy6129 208 LPENLKIQFRTVAMMVPDR 226 (383)
Q Consensus 208 lp~~l~~~fr~v~~~~Pd~ 226 (383)
+.+.|..++..+.+..|..
T Consensus 359 f~~dL~~rL~~~~i~lPpL 377 (520)
T PRK10820 359 FREDLYYRLNVLTLNLPPL 377 (520)
T ss_pred ccHHHHhhcCeeEEeCCCc
Confidence 5566777766677766763
No 121
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.47 E-value=2.1e-07 Score=77.49 Aligned_cols=127 Identities=12% Similarity=0.192 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCC---cEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecc
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAK---YVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDE 148 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~---~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~de 148 (383)
|...+....+..+-....+++++|++||||+.+++.+....+. +++.++|.... .+.+..+ .|.+++++|
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l~~a--~~gtL~l~~ 77 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELLEQA--KGGTLYLKN 77 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHHHHC--TTSEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHHHHc--CCCEEEECC
Confidence 4566666777777778899999999999999999999887765 45666776533 2233332 888999999
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCC---CCcchHHHHHhccccccCCCC
Q psy6129 149 FNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAG---RKELPENLKIQFRTVAMMVPD 225 (383)
Q Consensus 149 in~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g---~~~lp~~l~~~fr~v~~~~Pd 225 (383)
++.++.+....+.+.+.. . + ..++++++|+..+... ...+.+.|-.++..+.+..|.
T Consensus 78 i~~L~~~~Q~~L~~~l~~-------~-------~------~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 78 IDRLSPEAQRRLLDLLKR-------Q-------E------RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp GCCS-HHHHHHHHHHHHH-------C-------T------TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred hHHCCHHHHHHHHHHHHh-------c-------C------CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 999999998877655531 1 0 1446788888754321 345677777777777666664
No 122
>PRK06620 hypothetical protein; Validated
Probab=98.47 E-value=3.8e-06 Score=75.27 Aligned_cols=132 Identities=14% Similarity=0.198 Sum_probs=81.8
Q ss_pred ccceeechhhHHHHHHHHHHHHc-c-----CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhh
Q psy6129 65 TERLVITPLTDRCYITLAQALTM-S-----MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLA 138 (383)
Q Consensus 65 ~~~lv~Tp~t~r~~~~l~~al~~-~-----~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~ 138 (383)
-..+|.++....++..+..+-.. . .+.+++||+|+|||++++.+++..+..+.. .... . . ...
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-~-----~---~~~ 83 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-N-----E---EIL 83 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-c-----h---hHH
Confidence 34688888877777666665432 1 124689999999999999999888753322 1110 0 0 122
Q ss_pred hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeC--CCCCCCCcchHHHHHhc
Q psy6129 139 QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMN--PGYAGRKELPENLKIQF 216 (383)
Q Consensus 139 ~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~n--p~~~g~~~lp~~l~~~f 216 (383)
....++++||++..... .+..+.+.+.+.+. .+++|+. |.+ -.+ +.|++|+
T Consensus 84 ~~~d~lliDdi~~~~~~-------~lf~l~N~~~e~g~----------------~ilits~~~p~~---l~l-~~L~SRl 136 (214)
T PRK06620 84 EKYNAFIIEDIENWQEP-------ALLHIFNIINEKQK----------------YLLLTSSDKSRN---FTL-PDLSSRI 136 (214)
T ss_pred hcCCEEEEeccccchHH-------HHHHHHHHHHhcCC----------------EEEEEcCCCccc---cch-HHHHHHH
Confidence 34578999999965332 22233344444321 2334443 332 247 7899999
Q ss_pred c---ccccCCCCHHHHHHHHH
Q psy6129 217 R---TVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 217 r---~v~~~~Pd~~~i~ei~l 234 (383)
. .+.+..||.+.+.+++.
T Consensus 137 ~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 137 KSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred hCCceEeeCCCCHHHHHHHHH
Confidence 8 88999999888665543
No 123
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=5.5e-06 Score=84.01 Aligned_cols=130 Identities=14% Similarity=0.144 Sum_probs=83.4
Q ss_pred HHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l 130 (383)
...+..++..+.. .+++||+|+|||++++.+|+.+... ++.++....+..+++
T Consensus 25 ~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~i 104 (527)
T PRK14969 25 VRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAM 104 (527)
T ss_pred HHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHH
Confidence 3455566665433 3588999999999999999998531 233444445556666
Q ss_pred HHHHhhhhh-----cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeE-EEeeCCCCCC
Q psy6129 131 GRIYKGLAQ-----SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGI-FITMNPGYAG 204 (383)
Q Consensus 131 ~~~l~g~~~-----~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~i-f~T~np~~~g 204 (383)
..++..+.. ....+++||+++++.+....+ ++.+.+. .+++.| ++|.+|
T Consensus 105 r~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naL-------LK~LEep--------------p~~~~fIL~t~d~---- 159 (527)
T PRK14969 105 RELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAM-------LKTLEEP--------------PEHVKFILATTDP---- 159 (527)
T ss_pred HHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHH-------HHHHhCC--------------CCCEEEEEEeCCh----
Confidence 666654322 224677899999987654432 2222221 123334 445443
Q ss_pred CCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 205 RKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 205 ~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
..++..+++++..+.+..++.+.+.+.+
T Consensus 160 -~kil~tI~SRc~~~~f~~l~~~~i~~~L 187 (527)
T PRK14969 160 -QKIPVTVLSRCLQFNLKQMPPPLIVSHL 187 (527)
T ss_pred -hhCchhHHHHHHHHhcCCCCHHHHHHHH
Confidence 4677779999999999999988877644
No 124
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.46 E-value=3.3e-06 Score=80.92 Aligned_cols=139 Identities=16% Similarity=0.175 Sum_probs=83.6
Q ss_pred HHHHHHHHHHccC--CCCCcCCCCCCccHHHHHHHHHhC-----CcEEEEeCCCCCC-----------------------
Q psy6129 77 CYITLAQALTMSM--GGSPCGPAGTGKTETVKDMGKTLA-----KYVVVFNCSDQMD----------------------- 126 (383)
Q Consensus 77 ~~~~l~~al~~~~--~~~l~Gp~GtGKT~~i~~la~~lg-----~~~~~~~c~~~~~----------------------- 126 (383)
....+..++..+. ..+++||+|||||++++.+++.+. .++..+||+...+
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIR 102 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhc
Confidence 3444555566655 456789999999999999999874 2456778865211
Q ss_pred ---HHHHHHHHhhhh------hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEe
Q psy6129 127 ---YRGLGRIYKGLA------QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFIT 197 (383)
Q Consensus 127 ---~~~l~~~l~g~~------~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T 197 (383)
...+.++++... .....+++||++.++.+....+. +.+... .+++.+++|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~-------~~le~~--------------~~~~~~Il~ 161 (337)
T PRK12402 103 SSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALR-------RIMEQY--------------SRTCRFIIA 161 (337)
T ss_pred cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHH-------HHHHhc--------------cCCCeEEEE
Confidence 011222222221 22457899999988776543321 111111 123445566
Q ss_pred eCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCC
Q psy6129 198 MNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFL 240 (383)
Q Consensus 198 ~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~ 240 (383)
+|. ...+.+.+++++..+.+..|+.+.+.+++ +...|..
T Consensus 162 ~~~----~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~ 203 (337)
T PRK12402 162 TRQ----PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD 203 (337)
T ss_pred eCC----hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 542 23567789999999999889877765554 3345554
No 125
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.46 E-value=8.5e-05 Score=72.91 Aligned_cols=126 Identities=21% Similarity=0.170 Sum_probs=73.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHHH-HHHHHhh----------------------h-hhcC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRG-LGRIYKG----------------------L-AQSG 141 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~~-l~~~l~g----------------------~-~~~g 141 (383)
.+++||+|||||++++.+++.+ +..++.+||....+... +.+++.. . ...+
T Consensus 58 ~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (394)
T PRK00411 58 VLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERD 137 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 4578999999999999999877 45678899987766443 2232211 1 1122
Q ss_pred --ceEEecccccCC-hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc-
Q psy6129 142 --SWGCFDEFNRIE-LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR- 217 (383)
Q Consensus 142 --~w~~~dein~l~-~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr- 217 (383)
..+++||++.+. .... +.+..+.+.+.+. .+ .++.++++.|+.. -...+.+.++++|+
T Consensus 138 ~~~viviDE~d~l~~~~~~----~~l~~l~~~~~~~-------~~------~~v~vI~i~~~~~-~~~~l~~~~~s~~~~ 199 (394)
T PRK00411 138 RVLIVALDDINYLFEKEGN----DVLYSLLRAHEEY-------PG------ARIGVIGISSDLT-FLYILDPRVKSVFRP 199 (394)
T ss_pred CEEEEEECCHhHhhccCCc----hHHHHHHHhhhcc-------CC------CeEEEEEEECCcc-hhhhcCHHHHhcCCc
Confidence 467899999775 1111 1122222222111 11 1345666666421 11236777888885
Q ss_pred -ccccCCCCHHHHHHHHH
Q psy6129 218 -TVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 218 -~v~~~~Pd~~~i~ei~l 234 (383)
.+.+..++.+.+.+++.
T Consensus 200 ~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 200 EEIYFPPYTADEIFDILK 217 (394)
T ss_pred ceeecCCCCHHHHHHHHH
Confidence 45667777777777654
No 126
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=7.5e-06 Score=81.60 Aligned_cols=138 Identities=13% Similarity=0.143 Sum_probs=92.8
Q ss_pred HHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhC------------------------CcEEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLA------------------------KYVVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg------------------------~~~~~~~c~~~~~~~~l 130 (383)
...+..++..+.. .+++||+|+|||++++.+|+.+. ..++.++..+.+..+++
T Consensus 22 v~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddI 101 (491)
T PRK14964 22 VRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDI 101 (491)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHH
Confidence 3455566766544 35799999999999999999762 12467777777788888
Q ss_pred HHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 131 GRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 131 ~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
..++..+. .....+++||+++++.+....+ +..+.+- .+.+.|+++++ ..
T Consensus 102 R~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaL-------LK~LEeP--------------p~~v~fIlatt----e~ 156 (491)
T PRK14964 102 KVILENSCYLPISSKFKVYIIDEVHMLSNSAFNAL-------LKTLEEP--------------APHVKFILATT----EV 156 (491)
T ss_pred HHHHHHHHhccccCCceEEEEeChHhCCHHHHHHH-------HHHHhCC--------------CCCeEEEEEeC----Ch
Confidence 87776543 2345788999999988655433 2222111 13344444443 23
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHHh---hcCCC
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKLA---SCGFL 240 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~---~~gf~ 240 (383)
..+|..+++++..+.+..++.+.+.+.+.. ..|..
T Consensus 157 ~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 157 KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 579999999999999999988877766543 44544
No 127
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=5.1e-06 Score=81.04 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=79.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCc-----------------------EEEEeCC-CCCCHHHHHHHHhhhhh-----cC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKY-----------------------VVVFNCS-DQMDYRGLGRIYKGLAQ-----SG 141 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~-----------------------~~~~~c~-~~~~~~~l~~~l~g~~~-----~g 141 (383)
.++.||+|+|||++++.+|+.+... ++.+... .....+.+..++..+.. ..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~ 118 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRW 118 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCc
Confidence 3478999999999999999976432 1222222 22344455666554432 23
Q ss_pred ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCC-eeEEEeeCCCCCCCCcchHHHHHhccccc
Q psy6129 142 SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPE-FGIFITMNPGYAGRKELPENLKIQFRTVA 220 (383)
Q Consensus 142 ~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~-~~if~T~np~~~g~~~lp~~l~~~fr~v~ 220 (383)
.++++||++++..+....+ +..+.+- .++ ..|++|.|| ..+++.++++++.+.
T Consensus 119 kViiIDead~m~~~aanaL-------Lk~LEep--------------~~~~~fIL~a~~~-----~~llpTIrSRc~~i~ 172 (394)
T PRK07940 119 RIVVIEDADRLTERAANAL-------LKAVEEP--------------PPRTVWLLCAPSP-----EDVLPTIRSRCRHVA 172 (394)
T ss_pred EEEEEechhhcCHHHHHHH-------HHHhhcC--------------CCCCeEEEEECCh-----HHChHHHHhhCeEEE
Confidence 4678999999987754332 2222110 122 334455553 588999999999999
Q ss_pred cCCCCHHHHHHHHHhhcCCC
Q psy6129 221 MMVPDRQIIIRVKLASCGFL 240 (383)
Q Consensus 221 ~~~Pd~~~i~ei~l~~~gf~ 240 (383)
+..|+.+.+.+.+....|..
T Consensus 173 f~~~~~~~i~~~L~~~~~~~ 192 (394)
T PRK07940 173 LRTPSVEAVAEVLVRRDGVD 192 (394)
T ss_pred CCCCCHHHHHHHHHHhcCCC
Confidence 99999998877665444543
No 128
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=5.6e-06 Score=84.78 Aligned_cols=139 Identities=14% Similarity=0.107 Sum_probs=89.4
Q ss_pred HHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC-----------------------------cEEEEeCCCCC
Q psy6129 78 YITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK-----------------------------YVVVFNCSDQM 125 (383)
Q Consensus 78 ~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~-----------------------------~~~~~~c~~~~ 125 (383)
...+..++..+... +++||+|+|||++++.+|+.+.. .++.++.....
T Consensus 25 v~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~ 104 (618)
T PRK14951 25 VQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNR 104 (618)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccccc
Confidence 34566666665442 57899999999999999998853 13444555556
Q ss_pred CHHHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeE-EEeeC
Q psy6129 126 DYRGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGI-FITMN 199 (383)
Q Consensus 126 ~~~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~i-f~T~n 199 (383)
..+++..++..+. ....++++||+++++.+....+ +..+.+ ..+.+.| |+|.+
T Consensus 105 ~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaL-------LKtLEE--------------PP~~~~fIL~Ttd 163 (618)
T PRK14951 105 GVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAM-------LKTLEE--------------PPEYLKFVLATTD 163 (618)
T ss_pred CHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHH-------HHhccc--------------CCCCeEEEEEECC
Confidence 6666777765532 2235788999999988764432 211111 0123334 44444
Q ss_pred CCCCCCCcchHHHHHhccccccCCCCHHHHHHHHH---hhcCCCch
Q psy6129 200 PGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKL---ASCGFLEN 242 (383)
Q Consensus 200 p~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~~~gf~~~ 242 (383)
| ..++..+++++..+.+..++.+.+.+.+. ...|+.-.
T Consensus 164 ~-----~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie 204 (618)
T PRK14951 164 P-----QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE 204 (618)
T ss_pred c-----hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 3 46788899999999999888877765543 34566543
No 129
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.44 E-value=1.1e-06 Score=92.19 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=93.5
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHH-------------
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIY------------- 134 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l------------- 134 (383)
.|...+....+..+-....++++.||+|||||.+++.+.... +.|++.+||....+ ..+...+
T Consensus 382 S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~-~~~~~~lfg~~~~~~~g~~~ 460 (686)
T PRK15429 382 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA-GLLESDLFGHERGAFTGASA 460 (686)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-hHhhhhhcCccccccccccc
Confidence 345555555666666677788999999999999999987754 56899999987543 2222111
Q ss_pred --hhh--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCc
Q psy6129 135 --KGL--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKE 207 (383)
Q Consensus 135 --~g~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~ 207 (383)
.|. ...|+.+++||++.++.+....+...+ .++ .+.. .|..-....++++++|+|.+- .....
T Consensus 461 ~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l-------~~~--~~~~-~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 530 (686)
T PRK15429 461 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL-------QEQ--EFER-LGSNKIIQTDVRLIAATNRDLKKMVADRE 530 (686)
T ss_pred chhhHHHhcCCCeEEEechhhCCHHHHHHHHHHH-------HhC--CEEe-CCCCCcccceEEEEEeCCCCHHHHHHcCc
Confidence 111 235778999999999999877664433 332 2222 222223346789999998631 12334
Q ss_pred chHHHHHhccccccCCCCHH
Q psy6129 208 LPENLKIQFRTVAMMVPDRQ 227 (383)
Q Consensus 208 lp~~l~~~fr~v~~~~Pd~~ 227 (383)
+...|-.++..+.+..|...
T Consensus 531 f~~~L~~~l~~~~i~lPpLr 550 (686)
T PRK15429 531 FRSDLYYRLNVFPIHLPPLR 550 (686)
T ss_pred ccHHHHhccCeeEEeCCChh
Confidence 55555556666677777743
No 130
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.44 E-value=2.3e-05 Score=76.12 Aligned_cols=129 Identities=18% Similarity=0.112 Sum_probs=73.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC---------CcEEEEeCCCCCCHHH-HHHHHhh------------------------
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA---------KYVVVFNCSDQMDYRG-LGRIYKG------------------------ 136 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg---------~~~~~~~c~~~~~~~~-l~~~l~g------------------------ 136 (383)
.+++||+|||||++++.+++.+. ..++.+||....+... +.+++..
T Consensus 43 i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (365)
T TIGR02928 43 VFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYK 122 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Confidence 45789999999999999988763 3567889987665433 3222221
Q ss_pred -hhhc--CceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHH
Q psy6129 137 -LAQS--GSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLK 213 (383)
Q Consensus 137 -~~~~--g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~ 213 (383)
+... ...+++||++.+....-..+ ..+.+.. .. ...+ +.++.+++++|... -...+.++++
T Consensus 123 ~l~~~~~~~vlvIDE~d~L~~~~~~~L----~~l~~~~----~~------~~~~-~~~v~lI~i~n~~~-~~~~l~~~~~ 186 (365)
T TIGR02928 123 ELNERGDSLIIVLDEIDYLVGDDDDLL----YQLSRAR----SN------GDLD-NAKVGVIGISNDLK-FRENLDPRVK 186 (365)
T ss_pred HHHhcCCeEEEEECchhhhccCCcHHH----HhHhccc----cc------cCCC-CCeEEEEEEECCcc-hHhhcCHHHh
Confidence 1112 23578999998842211111 1111100 00 0000 13456666666421 1235777888
Q ss_pred Hhcc--ccccCCCCHHHHHHHHHh
Q psy6129 214 IQFR--TVAMMVPDRQIIIRVKLA 235 (383)
Q Consensus 214 ~~fr--~v~~~~Pd~~~i~ei~l~ 235 (383)
++|. .+.+..++.+.+.+++..
T Consensus 187 s~~~~~~i~f~p~~~~e~~~il~~ 210 (365)
T TIGR02928 187 SSLCEEEIIFPPYDAEELRDILEN 210 (365)
T ss_pred ccCCcceeeeCCCCHHHHHHHHHH
Confidence 8884 567777787777777643
No 131
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=7.7e-06 Score=85.75 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=79.3
Q ss_pred HHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc-------E-----------------EEEeCCCCCCHHHHHH
Q psy6129 80 TLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY-------V-----------------VVFNCSDQMDYRGLGR 132 (383)
Q Consensus 80 ~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~-------~-----------------~~~~c~~~~~~~~l~~ 132 (383)
.+..++..+.-. +++||+|||||++++.+|+.++.. | +.++-......+.+.+
T Consensus 27 ~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIRe 106 (944)
T PRK14949 27 ALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRE 106 (944)
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHH
Confidence 345556553322 478999999999999999998643 1 1122222234445555
Q ss_pred HHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEE-eeCCCCCCCC
Q psy6129 133 IYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFI-TMNPGYAGRK 206 (383)
Q Consensus 133 ~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~-T~np~~~g~~ 206 (383)
++.-+. .....+++||++++..+....+ ++.+.+- .+++.|++ |.++ .
T Consensus 107 Lie~v~~~P~~gk~KViIIDEAh~LT~eAqNAL-------LKtLEEP--------------P~~vrFILaTTe~-----~ 160 (944)
T PRK14949 107 LLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNAL-------LKTLEEP--------------PEHVKFLLATTDP-----Q 160 (944)
T ss_pred HHHHHHhhhhcCCcEEEEEechHhcCHHHHHHH-------HHHHhcc--------------CCCeEEEEECCCc-----h
Confidence 554332 1234678899999988776654 2222211 12233444 4443 4
Q ss_pred cchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 207 ELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 207 ~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
.|++.+++|++.+.+..++.+.+.+.+
T Consensus 161 kLl~TIlSRCq~f~fkpLs~eEI~~~L 187 (944)
T PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQL 187 (944)
T ss_pred hchHHHHHhheEEeCCCCCHHHHHHHH
Confidence 689999999999999888887776554
No 132
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.1e-05 Score=81.94 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=80.5
Q ss_pred HHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l 130 (383)
...+..++..+..+ ++.||+|+|||++++.+|+.+... ++.++.......+++
T Consensus 25 v~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~I 104 (605)
T PRK05896 25 KKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEI 104 (605)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHH
Confidence 34556667665443 478999999999999999988421 122333333444445
Q ss_pred HHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeE-EEeeCCCCCC
Q psy6129 131 GRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGI-FITMNPGYAG 204 (383)
Q Consensus 131 ~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~i-f~T~np~~~g 204 (383)
..+...+. .....+++||++++..+.... ++..+.+- .+...+ ++|.+
T Consensus 105 ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~Na-------LLKtLEEP--------------p~~tvfIL~Tt~----- 158 (605)
T PRK05896 105 RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNA-------LLKTLEEP--------------PKHVVFIFATTE----- 158 (605)
T ss_pred HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHH-------HHHHHHhC--------------CCcEEEEEECCC-----
Confidence 55543322 223467889999887664332 22222211 122333 34433
Q ss_pred CCcchHHHHHhccccccCCCCHHHHHHHHH
Q psy6129 205 RKELPENLKIQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 205 ~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l 234 (383)
.+.+++.+++|+..+.+..|+...+.+.+-
T Consensus 159 ~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~ 188 (605)
T PRK05896 159 FQKIPLTIISRCQRYNFKKLNNSELQELLK 188 (605)
T ss_pred hHhhhHHHHhhhhhcccCCCCHHHHHHHHH
Confidence 368999999999999999998887765543
No 133
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.39 E-value=8.5e-07 Score=88.61 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=89.5
Q ss_pred HHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCc--EEEEeCCCCC------------------------CHHH-HH
Q psy6129 79 ITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKY--VVVFNCSDQM------------------------DYRG-LG 131 (383)
Q Consensus 79 ~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~--~~~~~c~~~~------------------------~~~~-l~ 131 (383)
..+..+...+...+++||+|+|||++++.++..+... -..+.++.-. +... +|
T Consensus 201 ~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~G 280 (506)
T PRK09862 201 RGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVG 280 (506)
T ss_pred hhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhC
Confidence 3344444556667789999999999999998766321 0112222111 1111 11
Q ss_pred H---HHhhh--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC---CC
Q psy6129 132 R---IYKGL--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG---YA 203 (383)
Q Consensus 132 ~---~l~g~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~---~~ 203 (383)
- .-.|. ...|..+++||++.++..+++.+.+ .+.++ ...+...|..+....+|++++||||. |.
T Consensus 281 Gg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~-------~LE~g-~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 281 GGAIPGPGEISLAHNGVLFLDELPEFERRTLDALRE-------PIESG-QIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred CCceehhhHhhhccCCEEecCCchhCCHHHHHHHHH-------HHHcC-cEEEecCCcceeccCCEEEEEeecCccceec
Confidence 0 11232 3568899999999999988877643 33333 22222356677778899999999993 22
Q ss_pred CC--------------CcchHHHHHhccc-cccCCCCHHHH
Q psy6129 204 GR--------------KELPENLKIQFRT-VAMMVPDRQII 229 (383)
Q Consensus 204 g~--------------~~lp~~l~~~fr~-v~~~~Pd~~~i 229 (383)
+. ..++..+.+||-. +.+..|+...+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l 393 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGIL 393 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHH
Confidence 21 3578889999964 67788887643
No 134
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.39 E-value=2.4e-06 Score=85.20 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=95.8
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhh-----------
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKG----------- 136 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g----------- 136 (383)
.+...+....+..+.....+.++.|++||||+.+++.+....+ .+++.+||..-.+ +.+...+-|
T Consensus 145 s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~~~~~lfg~~~~~~~~~~~ 223 (445)
T TIGR02915 145 SPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NLLESELFGYEKGAFTGAVK 223 (445)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HHHHHHhcCCCCCCcCCCcc
Confidence 3455555555555555677788999999999999998877654 5799999997643 445444322
Q ss_pred ----h--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCc
Q psy6129 137 ----L--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKE 207 (383)
Q Consensus 137 ----~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~ 207 (383)
. ...|+.+++||++.++.++...+.+.+ .++ .+.. .|..-....++++++|++..- .....
T Consensus 224 ~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l-------~~~--~~~~-~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 293 (445)
T TIGR02915 224 QTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFL-------QER--VIER-LGGREEIPVDVRIVCATNQDLKRMIAEGT 293 (445)
T ss_pred CCCCceeECCCCEEEEechhhCCHHHHHHHHHHH-------hhC--eEEe-CCCCceeeeceEEEEecCCCHHHHHHcCC
Confidence 1 145778999999999999887765433 232 2222 222223446899999998642 12245
Q ss_pred chHHHHHhccccccCCCCH
Q psy6129 208 LPENLKIQFRTVAMMVPDR 226 (383)
Q Consensus 208 lp~~l~~~fr~v~~~~Pd~ 226 (383)
+.+.|-.++..+.+..|..
T Consensus 294 ~~~~L~~~l~~~~i~lPpL 312 (445)
T TIGR02915 294 FREDLFYRIAEISITIPPL 312 (445)
T ss_pred ccHHHHHHhccceecCCCc
Confidence 6666767777777777764
No 135
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.38 E-value=1.2e-05 Score=77.75 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=86.5
Q ss_pred HHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l 130 (383)
...+..+++.+..+ +++||+|+|||++++.+|+.+..+ ++.++-....+..++
T Consensus 23 ~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (355)
T TIGR02397 23 VQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDI 102 (355)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHH
Confidence 34555667665543 579999999999999999987421 344444444455556
Q ss_pred HHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 131 GRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 131 ~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
.+++..+. ....++++||++.+..+....+ +..+.+. .+++.+++++|. .
T Consensus 103 ~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~L-------l~~le~~--------------~~~~~lIl~~~~----~ 157 (355)
T TIGR02397 103 REILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNAL-------LKTLEEP--------------PEHVVFILATTE----P 157 (355)
T ss_pred HHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHH-------HHHHhCC--------------ccceeEEEEeCC----H
Confidence 66655432 2234778899998876544322 2222110 123444444432 2
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHH---hhcCCCch
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKL---ASCGFLEN 242 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~~~gf~~~ 242 (383)
..+++.+++++..+.+..|+...+.+.+. ...|..-.
T Consensus 158 ~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~ 197 (355)
T TIGR02397 158 HKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE 197 (355)
T ss_pred HHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 47888999999999998888877665543 34565433
No 136
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1.3e-05 Score=83.00 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCcE---------------------EEEeCCCCCCHHHHH
Q psy6129 76 RCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKYV---------------------VVFNCSDQMDYRGLG 131 (383)
Q Consensus 76 r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~~---------------------~~~~c~~~~~~~~l~ 131 (383)
.....+..++..+... +++||+|+|||++++.+|+.+...- +.++.......+.+.
T Consensus 25 ~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IR 104 (725)
T PRK07133 25 HIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIR 104 (725)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHH
Confidence 3345666777765443 5789999999999999999875321 111111123344455
Q ss_pred HHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCee-EEEeeCCCCCCC
Q psy6129 132 RIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFG-IFITMNPGYAGR 205 (383)
Q Consensus 132 ~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-if~T~np~~~g~ 205 (383)
+++..+. .....+++||++++..+....+ +..+.+- .+.+. |++|.+|
T Consensus 105 eLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NAL-------LKtLEEP--------------P~~tifILaTte~----- 158 (725)
T PRK07133 105 ELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNAL-------LKTLEEP--------------PKHVIFILATTEV----- 158 (725)
T ss_pred HHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHH-------HHHhhcC--------------CCceEEEEEcCCh-----
Confidence 5554432 2234677899999887654332 2222111 12233 4455443
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHH---hhcCCC
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKL---ASCGFL 240 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~~~gf~ 240 (383)
..||+.+++|+..+.+..|+...+.+.+. ...|..
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999998888776553 244544
No 137
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.1e-05 Score=82.19 Aligned_cols=131 Identities=13% Similarity=0.082 Sum_probs=82.4
Q ss_pred HHHHHHHHHccC--C-CCCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSM--G-GSPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~--~-~~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l 130 (383)
...+..++..+. . .++.||+|+|||++++.+|+.+... ++.++.......+++
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~i 104 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDA 104 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHH
Confidence 344555566543 2 3368999999999999999998642 344555444555555
Q ss_pred HHHHhhh-----hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 131 GRIYKGL-----AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 131 ~~~l~g~-----~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
.++..-+ .....++++||++++..+....+ +..+.+. .+++.+++++|. .
T Consensus 105 R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naL-------Lk~LEEP--------------~~~~ifILaTt~----~ 159 (624)
T PRK14959 105 KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNAL-------LKTLEEP--------------PARVTFVLATTE----P 159 (624)
T ss_pred HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHH-------HHHhhcc--------------CCCEEEEEecCC----h
Confidence 5543222 12235778999999987765443 2222111 123444444441 2
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
..++..+++++..+.+..++...+.+.+
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L 187 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHL 187 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHH
Confidence 5788889999999999888877776554
No 138
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.36 E-value=8.9e-07 Score=72.54 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=68.6
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCc---EEEEeCCCCCCHHH--------------------HHHHHhhhhhcC-ceEE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKY---VVVFNCSDQMDYRG--------------------LGRIYKGLAQSG-SWGC 145 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~---~~~~~c~~~~~~~~--------------------l~~~l~g~~~~g-~w~~ 145 (383)
..+++||+|||||++++.+|+.++.. ++.++++....... +...+..+.... .+++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999986 78888886543221 222233344444 8889
Q ss_pred ecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc
Q psy6129 146 FDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR 217 (383)
Q Consensus 146 ~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr 217 (383)
+||++++.....+........ ... ........+..+++++|+ .....+..++.+++
T Consensus 84 iDei~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~ 139 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEE-LRL------------LLLLKSEKNLTVILTTND---EKDLGPALLRRRFD 139 (148)
T ss_pred EECCcccCCHHHHHHHHhhhh-hHH------------HHHHHhcCCCEEEEEeCC---CccCchhhhhhccc
Confidence 999998887765543222110 000 001111245678888886 23455555655543
No 139
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.35 E-value=8.8e-06 Score=73.60 Aligned_cols=119 Identities=8% Similarity=0.064 Sum_probs=73.0
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHH
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQV 164 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~ 164 (383)
..+.+++||+|||||++++.+++.+ |.++..++|...... + .....+.++++||++.++.+....+...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~--~-----~~~~~~~~liiDdi~~l~~~~~~~L~~~- 113 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA--F-----DFDPEAELYAVDDVERLDDAQQIALFNL- 113 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH--H-----hhcccCCEEEEeChhhcCchHHHHHHHH-
Confidence 3456789999999999999999865 677888888764322 1 2234577899999998877654443322
Q ss_pred HHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc---cccccCCCCHHHHHHHH
Q psy6129 165 AVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF---RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f---r~v~~~~Pd~~~i~ei~ 233 (383)
++...+... ..+++|.+.. .....+.+.+.++| ..+.+..|+.....+++
T Consensus 114 ---~~~~~~~~~---------------~~vl~~~~~~-~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 114 ---FNRVRAHGQ---------------GALLVAGPAA-PLALPLREDLRTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred ---HHHHHHcCC---------------cEEEEeCCCC-HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHH
Confidence 222222111 1122233211 11223557788887 46778888877655543
No 140
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1.5e-05 Score=81.78 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=87.8
Q ss_pred HHHHHHHHHccC---CCCCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSM---GGSPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~---~~~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l 130 (383)
...+..++..+. ..+++||+|+|||++++.+|+.++.. ++.++....+..+.+
T Consensus 25 v~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~I 104 (709)
T PRK08691 25 VKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNI 104 (709)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHH
Confidence 345555666554 24679999999999999999987532 233444445555566
Q ss_pred HHHHhhh-----hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 131 GRIYKGL-----AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 131 ~~~l~g~-----~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
..++..+ ......+++||+++++.+....+ ++.+.+. .+.+.|++++|. .
T Consensus 105 Relle~a~~~P~~gk~KVIIIDEad~Ls~~A~NAL-------LKtLEEP--------------p~~v~fILaTtd----~ 159 (709)
T PRK08691 105 REVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAM-------LKTLEEP--------------PEHVKFILATTD----P 159 (709)
T ss_pred HHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHH-------HHHHHhC--------------CCCcEEEEEeCC----c
Confidence 6666543 12345788999999887654332 2222221 123445555542 3
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCC
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFL 240 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~ 240 (383)
..++..+++++..+.+..++...+.+.+ +...|..
T Consensus 160 ~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 160 HKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred cccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5788899999999998888877765544 4455654
No 141
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.34 E-value=1.6e-05 Score=75.57 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=86.5
Q ss_pred HHHHHHHHHHccC--CCCCcCCCCCCccHHHHHHHHHhC-----CcEEEEeCCCCCCHHHHHHHHhhhhh-------cCc
Q psy6129 77 CYITLAQALTMSM--GGSPCGPAGTGKTETVKDMGKTLA-----KYVVVFNCSDQMDYRGLGRIYKGLAQ-------SGS 142 (383)
Q Consensus 77 ~~~~l~~al~~~~--~~~l~Gp~GtGKT~~i~~la~~lg-----~~~~~~~c~~~~~~~~l~~~l~g~~~-------~g~ 142 (383)
....+..++..+. +.+++||+|||||++++.+++.+. ..++.++++.......+.+.+...+. ...
T Consensus 25 ~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 104 (319)
T PRK00440 25 IVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFK 104 (319)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCce
Confidence 3344555555433 256789999999999999999873 23566677666555544444433321 234
Q ss_pred eEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccC
Q psy6129 143 WGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMM 222 (383)
Q Consensus 143 w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~ 222 (383)
++++||++.+..+....+ ...+ +.. .+++.+++++|. ...+.+.+++++..+.+.
T Consensus 105 vviiDe~~~l~~~~~~~L-------~~~l-e~~-------------~~~~~lIl~~~~----~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 105 IIFLDEADNLTSDAQQAL-------RRTM-EMY-------------SQNTRFILSCNY----SSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred EEEEeCcccCCHHHHHHH-------HHHH-hcC-------------CCCCeEEEEeCC----ccccchhHHHHhheeeeC
Confidence 889999998877654332 1111 110 123456666663 256778899999888888
Q ss_pred CCCHHHHHHHH---HhhcCCC
Q psy6129 223 VPDRQIIIRVK---LASCGFL 240 (383)
Q Consensus 223 ~Pd~~~i~ei~---l~~~gf~ 240 (383)
.++.+.+...+ +...|..
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~~ 180 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGIE 180 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCC
Confidence 88877765544 3345554
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.33 E-value=5.6e-07 Score=96.21 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=84.2
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCCCC---H-----HHHHHHHhhhhh--cCceEEec
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQMD---Y-----RGLGRIYKGLAQ--SGSWGCFD 147 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~~~---~-----~~l~~~l~g~~~--~g~w~~~d 147 (383)
...++|+||||+|||++++.+|..+ |.+++.++.+.... + ..+.+++.-+.. ....+++|
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfID 278 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 278 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3456789999999999999999988 67888887776331 1 124455554433 34688999
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHHhccccccCCCCH
Q psy6129 148 EFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKIQFRTVAMMVPDR 226 (383)
Q Consensus 148 ein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~~fr~v~~~~Pd~ 226 (383)
|++.+...--+..+.....++....+ . ....+++++++ +|....++++++.++|..|.+..|+.
T Consensus 279 Eih~l~~~~~~~~~~d~~~~lkp~l~--------~-------g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~ 343 (857)
T PRK10865 279 ELHTMVGAGKADGAMDAGNMLKPALA--------R-------GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSV 343 (857)
T ss_pred cHHHhccCCCCccchhHHHHhcchhh--------c-------CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCH
Confidence 99976422100000011111111111 1 24567777776 55444678999999999999999998
Q ss_pred HHHHHHH
Q psy6129 227 QIIIRVK 233 (383)
Q Consensus 227 ~~i~ei~ 233 (383)
+...+++
T Consensus 344 ~~~~~iL 350 (857)
T PRK10865 344 EDTIAIL 350 (857)
T ss_pred HHHHHHH
Confidence 8777664
No 143
>PRK06893 DNA replication initiation factor; Validated
Probab=98.32 E-value=8.6e-06 Score=73.84 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=71.4
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVL 168 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~ 168 (383)
+++||+|||||+++.++|+.+ |..+..++++.... ...+++.++ ....++++||+..+..+.- ..+.+..+.
T Consensus 43 ~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~-~~~dlLilDDi~~~~~~~~--~~~~l~~l~ 117 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--FSPAVLENL-EQQDLVCLDDLQAVIGNEE--WELAIFDLF 117 (229)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--hhHHHHhhc-ccCCEEEEeChhhhcCChH--HHHHHHHHH
Confidence 578999999999999999876 44555555542111 112333343 3457899999997753321 111233333
Q ss_pred HHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc---ccccCCCCHHHHHHHHH
Q psy6129 169 AAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR---TVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr---~v~~~~Pd~~~i~ei~l 234 (383)
+...+.+ . ..+++|.|..-..-....+.++++++ .+.+..||.+...+++.
T Consensus 118 n~~~~~~--------~-------~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 118 NRIKEQG--------K-------TLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred HHHHHcC--------C-------cEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3333221 1 11344444211111223368999997 77899999988877754
No 144
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.9e-05 Score=80.64 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=85.9
Q ss_pred HHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC------------------------cEEEEeCCCCCCHHHHH
Q psy6129 79 ITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK------------------------YVVVFNCSDQMDYRGLG 131 (383)
Q Consensus 79 ~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~------------------------~~~~~~c~~~~~~~~l~ 131 (383)
..+..++..+..+ +++||+|||||++++.+|+.+.. .++.++.......+.+.
T Consensus 26 ~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir 105 (559)
T PRK05563 26 KTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIR 105 (559)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHH
Confidence 4555666654433 46999999999999999998752 23344444334455555
Q ss_pred HHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeE-EEeeCCCCCCC
Q psy6129 132 RIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGI-FITMNPGYAGR 205 (383)
Q Consensus 132 ~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~i-f~T~np~~~g~ 205 (383)
.+..-+. ....++++||++++..+....+ +..+.+- .+++.| ++|.+|
T Consensus 106 ~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naL-------LKtLEep--------------p~~~ifIlatt~~----- 159 (559)
T PRK05563 106 DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNAL-------LKTLEEP--------------PAHVIFILATTEP----- 159 (559)
T ss_pred HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHH-------HHHhcCC--------------CCCeEEEEEeCCh-----
Confidence 5554322 2345778999999987654433 2211110 123333 444443
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHH---hhcCCCch
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKL---ASCGFLEN 242 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~~~gf~~~ 242 (383)
+.+|+.+++++..+.+..|+...+.+.+. ...|..-.
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~ 199 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE 199 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 57999999999999998888877766553 34565433
No 145
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.32 E-value=2.5e-05 Score=81.79 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=75.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhh------hhcCceEEecccccCChhhHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGL------AQSGSWGCFDEFNRIELPVLSVAAQQV 164 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~------~~~g~w~~~dein~l~~~~ls~l~~~~ 164 (383)
.+++||+|||||++++.+|+.++.+++.+||+.. ...++...+..+ ...+..+++||+++++......+
T Consensus 55 lLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaL---- 129 (725)
T PRK13341 55 LILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDAL---- 129 (725)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHH----
Confidence 4578999999999999999999999989998742 223343333322 12456789999998876553322
Q ss_pred HHHHHHHHhcCceeEecCCcEEEecCCeeEEEee--CCCCCCCCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 165 AVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITM--NPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~--np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
+..+ + ++ . +.+++++ ||. ..+++.++++++.+.+..++.+.+.+++
T Consensus 130 ---L~~l-E--------~g-~------IiLI~aTTenp~----~~l~~aL~SR~~v~~l~pLs~edi~~IL 177 (725)
T PRK13341 130 ---LPWV-E--------NG-T------ITLIGATTENPY----FEVNKALVSRSRLFRLKSLSDEDLHQLL 177 (725)
T ss_pred ---HHHh-c--------Cc-e------EEEEEecCCChH----hhhhhHhhccccceecCCCCHHHHHHHH
Confidence 1111 1 11 1 1233322 332 4688999999999999888887776665
No 146
>KOG0743|consensus
Probab=98.32 E-value=5.4e-06 Score=79.90 Aligned_cols=170 Identities=19% Similarity=0.094 Sum_probs=104.1
Q ss_pred cccccCCccceeechhhHHHHHHHHHHHHc------------cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC
Q psy6129 58 QNEYLGCTERLVITPLTDRCYITLAQALTM------------SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM 125 (383)
Q Consensus 58 gyEy~g~~~~lv~Tp~t~r~~~~l~~al~~------------~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~ 125 (383)
+||---.-..++..|...+-...-+..... ..|-+|+||||||||+.|.++|..|+..++-++-++..
T Consensus 193 ~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~ 272 (457)
T KOG0743|consen 193 GFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK 272 (457)
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc
Confidence 444443334677777666555555544422 45667999999999999999999999999999998877
Q ss_pred CHHHHHHHHhhhhhcCceEEecccccCCh------------------hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEE
Q psy6129 126 DYRGLGRIYKGLAQSGSWGCFDEFNRIEL------------------PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIE 187 (383)
Q Consensus 126 ~~~~l~~~l~g~~~~g~w~~~dein~l~~------------------~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~ 187 (383)
+-.++.+++..+ ...+.+++.|||..-. -+|| .+++++ +|-|=.
T Consensus 273 ~n~dLr~LL~~t-~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlS-------GLLNfi----------DGlwSs 334 (457)
T KOG0743|consen 273 LDSDLRHLLLAT-PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLS-------GLLNFL----------DGLWSS 334 (457)
T ss_pred CcHHHHHHHHhC-CCCcEEEEeecccccccccccccccccccCCcceeehH-------Hhhhhh----------cccccc
Confidence 777777777544 4467888999885410 0111 122222 222211
Q ss_pred ecCCeeEEEeeCCCCCCCCcchHHHHHhcc---ccccCC---CCHHHHHHHHHhhcCCCchHHHHHHHHHH
Q psy6129 188 MCPEFGIFITMNPGYAGRKELPENLKIQFR---TVAMMV---PDRQIIIRVKLASCGFLENITLARKFYTL 252 (383)
Q Consensus 188 ~~~~~~if~T~np~~~g~~~lp~~l~~~fr---~v~~~~---Pd~~~i~ei~l~~~gf~~~~~la~ki~~~ 252 (383)
.-..--+|+|+|. ...|+++|.+.=| -+.|.+ ...+.++..+| |..++..|++.|..+
T Consensus 335 cg~ERIivFTTNh----~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL---~~~~~h~L~~eie~l 398 (457)
T KOG0743|consen 335 CGDERIIVFTTNH----KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL---GIEEDHRLFDEIERL 398 (457)
T ss_pred CCCceEEEEecCC----hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc---CCCCCcchhHHHHHH
Confidence 1123357889984 4689999876443 344443 33445555444 333345566666553
No 147
>PRK09087 hypothetical protein; Validated
Probab=98.30 E-value=1.4e-05 Score=72.26 Aligned_cols=140 Identities=11% Similarity=0.103 Sum_probs=80.1
Q ss_pred ccceeechhhHHHHHHHHHHHHccC-CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCce
Q psy6129 65 TERLVITPLTDRCYITLAQALTMSM-GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSW 143 (383)
Q Consensus 65 ~~~lv~Tp~t~r~~~~l~~al~~~~-~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w 143 (383)
-..+|.++....++..+........ +..++||+|+|||++++.+++..+..++ +.. ..... ++.++ . ..+
T Consensus 20 ~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~-~~~~~----~~~~~-~-~~~ 90 (226)
T PRK09087 20 RDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSDALLI--HPN-EIGSD----AANAA-A-EGP 90 (226)
T ss_pred hhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHH-HcchH----HHHhh-h-cCe
Confidence 3467777766555554443222222 2568999999999999998887654432 221 11111 11111 2 258
Q ss_pred EEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc---cccc
Q psy6129 144 GCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF---RTVA 220 (383)
Q Consensus 144 ~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f---r~v~ 220 (383)
+++||++.++.. ... +..+.+.+.+.+. .+++|++..-.......+.+++|+ ..+.
T Consensus 91 l~iDDi~~~~~~-~~~----lf~l~n~~~~~g~----------------~ilits~~~p~~~~~~~~dL~SRl~~gl~~~ 149 (226)
T PRK09087 91 VLIEDIDAGGFD-ETG----LFHLINSVRQAGT----------------SLLMTSRLWPSSWNVKLPDLKSRLKAATVVE 149 (226)
T ss_pred EEEECCCCCCCC-HHH----HHHHHHHHHhCCC----------------eEEEECCCChHHhccccccHHHHHhCCceee
Confidence 899999976432 112 2333333333221 244454421111234467799999 7889
Q ss_pred cCCCCHHHHHHHHH
Q psy6129 221 MMVPDRQIIIRVKL 234 (383)
Q Consensus 221 ~~~Pd~~~i~ei~l 234 (383)
+..||.+...+++.
T Consensus 150 l~~pd~e~~~~iL~ 163 (226)
T PRK09087 150 IGEPDDALLSQVIF 163 (226)
T ss_pred cCCCCHHHHHHHHH
Confidence 99999988777764
No 148
>KOG0731|consensus
Probab=98.29 E-value=2.5e-06 Score=87.62 Aligned_cols=141 Identities=19% Similarity=0.187 Sum_probs=82.6
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhh-hhcCceEEecccccCChhhH--
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGL-AQSGSWGCFDEFNRIELPVL-- 157 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~-~~~g~w~~~dein~l~~~~l-- 157 (383)
.-+|++|+||||||||.++|++|...|.|++.++.|+-+. ++.+..++.-+ ....+.+++||||.+...--
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~ 422 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGK 422 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEeccccccccccccc
Confidence 3577889999999999999999999999999998887543 22234444444 23567889999995533220
Q ss_pred -HHHHHH-HHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCH---HHH
Q psy6129 158 -SVAAQQ-VAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDR---QII 229 (383)
Q Consensus 158 -s~l~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~---~~i 229 (383)
....+. -..-++++.-.. +|..- ..+.-+++++|-. ..|+++|++ || |.+.+..||. ..|
T Consensus 423 ~~~~~~~e~e~tlnQll~em------Dgf~~--~~~vi~~a~tnr~----d~ld~allrpGRfdr~i~i~~p~~~~r~~i 490 (774)
T KOG0731|consen 423 GTGGGQDEREQTLNQLLVEM------DGFET--SKGVIVLAATNRP----DILDPALLRPGRFDRQIQIDLPDVKGRASI 490 (774)
T ss_pred ccCCCChHHHHHHHHHHHHh------cCCcC--CCcEEEEeccCCc----cccCHHhcCCCccccceeccCCchhhhHHH
Confidence 000000 000111221111 22111 1334556666632 355666653 23 6788899995 456
Q ss_pred HHHHHhhcCC
Q psy6129 230 IRVKLASCGF 239 (383)
Q Consensus 230 ~ei~l~~~gf 239 (383)
.++++...-.
T Consensus 491 ~~~h~~~~~~ 500 (774)
T KOG0731|consen 491 LKVHLRKKKL 500 (774)
T ss_pred HHHHhhccCC
Confidence 6666654444
No 149
>KOG0744|consensus
Probab=98.29 E-value=2e-06 Score=79.21 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=96.9
Q ss_pred cccccCCccceee-chhhHHHHHHHHHHHH------------ccCCCCCcCCCCCCccHHHHHHHHHhCC---------c
Q psy6129 58 QNEYLGCTERLVI-TPLTDRCYITLAQALT------------MSMGGSPCGPAGTGKTETVKDMGKTLAK---------Y 115 (383)
Q Consensus 58 gyEy~g~~~~lv~-Tp~t~r~~~~l~~al~------------~~~~~~l~Gp~GtGKT~~i~~la~~lg~---------~ 115 (383)
+-||-|-=..+|. +-+-+|.+...+.++. .+.-.++.||||||||++.|+||+.|.. .
T Consensus 134 a~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~ 213 (423)
T KOG0744|consen 134 AAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ 213 (423)
T ss_pred chhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce
Confidence 4577777766766 4456676655555542 2333457899999999999999999853 2
Q ss_pred EEEEeCCCCCC------HHHHHHHHhhh----hhcCceEE--ecccccCChhhHHHHH-----HHHHHHHHHHHhcCcee
Q psy6129 116 VVVFNCSDQMD------YRGLGRIYKGL----AQSGSWGC--FDEFNRIELPVLSVAA-----QQVAVVLAAKKEKKKSF 178 (383)
Q Consensus 116 ~~~~~c~~~~~------~~~l~~~l~g~----~~~g~w~~--~dein~l~~~~ls~l~-----~~~~~i~~~~~~~~~~~ 178 (383)
++.+||+.-++ -+-+.+.++.+ --.|..+| +||+..+...--+..+ +.++ +.+++..
T Consensus 214 liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIR-vVNalLT----- 287 (423)
T KOG0744|consen 214 LIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIR-VVNALLT----- 287 (423)
T ss_pred EEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHH-HHHHHHH-----
Confidence 45678876543 12244444432 23455443 5887633111000000 0000 0111111
Q ss_pred EecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcccc-ccCCCCHHHHHHHHH
Q psy6129 179 VFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTV-AMMVPDRQIIIRVKL 234 (383)
Q Consensus 179 ~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v-~~~~Pd~~~i~ei~l 234 (383)
.-..++..||+-+.+|.|- ...|+.+|-+|--.+ ++.+|..+.|.+|+.
T Consensus 288 ---QlDrlK~~~NvliL~TSNl----~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 288 ---QLDRLKRYPNVLILATSNL----TDSIDVAFVDRADIVFYVGPPTAEAIYEILK 337 (423)
T ss_pred ---HHHHhccCCCEEEEeccch----HHHHHHHhhhHhhheeecCCccHHHHHHHHH
Confidence 0124566799999999985 357888887777554 668898888888864
No 150
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.2e-05 Score=80.50 Aligned_cols=137 Identities=17% Similarity=0.164 Sum_probs=87.1
Q ss_pred HHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l 130 (383)
...+..++..+... +++||+|+|||++++.+|+.+... ++.++.......+++
T Consensus 25 ~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~i 104 (576)
T PRK14965 25 SRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDI 104 (576)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHH
Confidence 34555666665433 578999999999999999998531 344454445555566
Q ss_pred HHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEE-EeeCCCCCC
Q psy6129 131 GRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIF-ITMNPGYAG 204 (383)
Q Consensus 131 ~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if-~T~np~~~g 204 (383)
..+...+. .....+++||++++..+....+ +..+.+- .+++.|+ +|.+|
T Consensus 105 r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naL-------Lk~LEep--------------p~~~~fIl~t~~~---- 159 (576)
T PRK14965 105 RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNAL-------LKTLEEP--------------PPHVKFIFATTEP---- 159 (576)
T ss_pred HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHH-------HHHHHcC--------------CCCeEEEEEeCCh----
Confidence 65554432 2234678899998887654433 2222111 1233344 44333
Q ss_pred CCcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCC
Q psy6129 205 RKELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFL 240 (383)
Q Consensus 205 ~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~ 240 (383)
+.||..+++++..+.+..++...+.+.+ +...|..
T Consensus 160 -~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 160 -HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred -hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999887776544 2345654
No 151
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=3.3e-05 Score=77.75 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=90.6
Q ss_pred HHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC------------------------cEEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK------------------------YVVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~------------------------~~~~~~c~~~~~~~~l 130 (383)
...+..++..+.-+ +++||+|+|||++++.+|+.+.. .++.++.......+++
T Consensus 23 ~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~I 102 (535)
T PRK08451 23 SKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDI 102 (535)
T ss_pred HHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHH
Confidence 34556667666554 57899999999999999998731 1334444333445666
Q ss_pred HHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 131 GRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 131 ~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
..++..+. .....+++||++++..+....+ +..+.+- .+.+.|+++++. .
T Consensus 103 Relie~~~~~P~~~~~KVvIIDEad~Lt~~A~NAL-------LK~LEEp--------------p~~t~FIL~ttd----~ 157 (535)
T PRK08451 103 RELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNAL-------LKTLEEP--------------PSYVKFILATTD----P 157 (535)
T ss_pred HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHH-------HHHHhhc--------------CCceEEEEEECC----h
Confidence 66665432 2234678899999988876544 2222111 133455555542 2
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCCch
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFLEN 242 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~~~ 242 (383)
..+|+.+++|+..+.+..++...+.+.+ +...|..-.
T Consensus 158 ~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~ 197 (535)
T PRK08451 158 LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE 197 (535)
T ss_pred hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 6899999999999999998887776654 335666433
No 152
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.28 E-value=6.9e-05 Score=67.42 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=79.7
Q ss_pred ceeechhhHHHHHHHHHHHHccC-----CCCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHH-------H
Q psy6129 67 RLVITPLTDRCYITLAQALTMSM-----GGSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYR-------G 129 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~~~-----~~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~-------~ 129 (383)
.+|..+-...++... .++..+. +..++||+|+|||++++++++.+ +..++.+++.+-++.- .
T Consensus 9 nfv~g~~N~~a~~~~-~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~ 87 (219)
T PF00308_consen 9 NFVVGESNELAYAAA-KAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGE 87 (219)
T ss_dssp CS--TTTTHHHHHHH-HHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTS
T ss_pred cCCcCCcHHHHHHHH-HHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHccc
Confidence 355555444444333 3343332 23578999999999999998765 3445555543211100 0
Q ss_pred HHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcch
Q psy6129 130 LGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELP 209 (383)
Q Consensus 130 l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp 209 (383)
+..+. .-...-.++++|+++.+.... ...+.+..+.+.+.+.+. ++++|++-.-..-..+.
T Consensus 88 ~~~~~-~~~~~~DlL~iDDi~~l~~~~--~~q~~lf~l~n~~~~~~k----------------~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 88 IEEFK-DRLRSADLLIIDDIQFLAGKQ--RTQEELFHLFNRLIESGK----------------QLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHH-HHHCTSSEEEEETGGGGTTHH--HHHHHHHHHHHHHHHTTS----------------EEEEEESS-TTTTTTS-
T ss_pred chhhh-hhhhcCCEEEEecchhhcCch--HHHHHHHHHHHHHHhhCC----------------eEEEEeCCCCccccccC
Confidence 11111 123456788999999887653 223344444555544332 23445542111224578
Q ss_pred HHHHHhcc---ccccCCCCHHHHHHHHH---hhcCCC
Q psy6129 210 ENLKIQFR---TVAMMVPDRQIIIRVKL---ASCGFL 240 (383)
Q Consensus 210 ~~l~~~fr---~v~~~~Pd~~~i~ei~l---~~~gf~ 240 (383)
+.|++||. .+.+..||.+...+++. ...|+.
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~ 185 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE 185 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 89999995 57788999887776654 344554
No 153
>PRK08727 hypothetical protein; Validated
Probab=98.27 E-value=2.4e-05 Score=71.08 Aligned_cols=125 Identities=15% Similarity=0.091 Sum_probs=74.4
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAV 166 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~ 166 (383)
+.++.||+|||||+++.+++..+ |.....+++.+... .+.+.+... ..-..+++||++.+....-. .+.+..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~l-~~~dlLiIDDi~~l~~~~~~--~~~lf~ 117 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--RLRDALEAL-EGRSLVALDGLESIAGQRED--EVALFD 117 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--hHHHHHHHH-hcCCEEEEeCcccccCChHH--HHHHHH
Confidence 45689999999999999987654 44555566543221 123333333 33457899999987643211 111212
Q ss_pred HHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc---cccccCCCCHHHHHHHHHh
Q psy6129 167 VLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF---RTVAMMVPDRQIIIRVKLA 235 (383)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f---r~v~~~~Pd~~~i~ei~l~ 235 (383)
+.+...++ ...+++|+|-.-..-..+.+.++++| ..+.+..||.+...+++..
T Consensus 118 l~n~~~~~----------------~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 118 FHNRARAA----------------GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred HHHHHHHc----------------CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 22222221 12356666632223345678899995 5678899998888777653
No 154
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=3.8e-05 Score=79.19 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCCc--------------------------EEEEeCCCCC
Q psy6129 75 DRCYITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAKY--------------------------VVVFNCSDQM 125 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~~--------------------------~~~~~c~~~~ 125 (383)
+.....+..++..+.. .+++||+|+|||++++.+|+.++.. ++.++.....
T Consensus 22 ~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~ 101 (620)
T PRK14948 22 EAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNT 101 (620)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccC
Confidence 3344556666665543 3679999999999999999998642 2223333334
Q ss_pred CHHHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC
Q psy6129 126 DYRGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP 200 (383)
Q Consensus 126 ~~~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np 200 (383)
..+.+..++..+. .....+++||++++..+....+ +..+.+- .+.+.|+++++.
T Consensus 102 ~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naL-------LK~LEeP--------------p~~tvfIL~t~~ 160 (620)
T PRK14948 102 GVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNAL-------LKTLEEP--------------PPRVVFVLATTD 160 (620)
T ss_pred CHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHH-------HHHHhcC--------------CcCeEEEEEeCC
Confidence 4555666654432 1234678899999987654433 2222111 122334444431
Q ss_pred CCCCCCcchHHHHHhccccccCCCCHHHHHHHHH
Q psy6129 201 GYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 201 ~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l 234 (383)
...+.+.+++++..+.+..++...+.+.+.
T Consensus 161 ----~~~llpTIrSRc~~~~f~~l~~~ei~~~L~ 190 (620)
T PRK14948 161 ----PQRVLPTIISRCQRFDFRRIPLEAMVQHLS 190 (620)
T ss_pred ----hhhhhHHHHhheeEEEecCCCHHHHHHHHH
Confidence 235788899999999998888777665443
No 155
>KOG0733|consensus
Probab=98.24 E-value=4.5e-06 Score=82.81 Aligned_cols=130 Identities=17% Similarity=0.229 Sum_probs=78.5
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhh-hhcCceEEecccccCChh---h
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGL-AQSGSWGCFDEFNRIELP---V 156 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~-~~~g~w~~~dein~l~~~---~ 156 (383)
.-.|++|+||||||||-++|++|+..|.+++.+...+-+ +...+.++|.-+ ....+.++|||+|-+-+. -
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~ 623 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE 623 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC
Confidence 356778999999999999999999999999988766543 233355555544 456789999999977431 1
Q ss_pred HHHHHH-HHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHHH
Q psy6129 157 LSVAAQ-QVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIRV 232 (383)
Q Consensus 157 ls~l~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ei 232 (383)
.+..+. .+..++..+ +|- .-..+..+++++|-. .-+++++.+ +| +.+++..|+.+.=.+|
T Consensus 624 ~s~~s~RvvNqLLtEl----------DGl--~~R~gV~viaATNRP----DiIDpAiLRPGRlDk~LyV~lPn~~eR~~I 687 (802)
T KOG0733|consen 624 GSSVSSRVVNQLLTEL----------DGL--EERRGVYVIAATNRP----DIIDPAILRPGRLDKLLYVGLPNAEERVAI 687 (802)
T ss_pred CchhHHHHHHHHHHHh----------ccc--ccccceEEEeecCCC----cccchhhcCCCccCceeeecCCCHHHHHHH
Confidence 122222 222222222 110 012345567777742 245555542 12 4567778876554433
No 156
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.24 E-value=1e-05 Score=81.00 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=93.3
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhh------------
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKG------------ 136 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g------------ 136 (383)
|...+....+..+.....+.++.|++||||+.+++.+.... +.+++.++|..-.+ ..+...+-|
T Consensus 150 ~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~ 228 (457)
T PRK11361 150 PAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTL 228 (457)
T ss_pred HHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCC
Confidence 44445555555555566778899999999999999887654 46899999987643 334433322
Q ss_pred ---h--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC---CCCcc
Q psy6129 137 ---L--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA---GRKEL 208 (383)
Q Consensus 137 ---~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~---g~~~l 208 (383)
. ...|+.+++||++.++.+....+.+.+ .++ .+.. .|..-....++++++|+|.+.. ....+
T Consensus 229 ~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l-------~~~--~~~~-~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 229 RQGLFERANEGTLLLDEIGEMPLVLQAKLLRIL-------QER--EFER-IGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred CCCceEECCCCEEEEechhhCCHHHHHHHHHHH-------hcC--cEEe-CCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 1 234678899999999999876654333 332 2222 1222234457899999986421 22355
Q ss_pred hHHHHHhccccccCCCCHH
Q psy6129 209 PENLKIQFRTVAMMVPDRQ 227 (383)
Q Consensus 209 p~~l~~~fr~v~~~~Pd~~ 227 (383)
.+.+-.++..+.+..|...
T Consensus 299 ~~~l~~~l~~~~i~~ppLr 317 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLR 317 (457)
T ss_pred hHHHHHHhccceecCCChh
Confidence 6666667777777777643
No 157
>PRK15115 response regulator GlrR; Provisional
Probab=98.24 E-value=9.2e-06 Score=81.05 Aligned_cols=131 Identities=20% Similarity=0.229 Sum_probs=84.3
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhh---------------h--hhcCceEE
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKG---------------L--AQSGSWGC 145 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g---------------~--~~~g~w~~ 145 (383)
....++++.|++||||+.+++.+.+..+ .+++.++|.... ...+...+-| . ...|..++
T Consensus 155 ~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ 233 (444)
T PRK15115 155 QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALP-EQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 (444)
T ss_pred cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCC-HHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEE
Confidence 3445567899999999999999888754 689999999763 3334443322 1 23467899
Q ss_pred ecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC---CCCCCcchHHHHHhccccccC
Q psy6129 146 FDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG---YAGRKELPENLKIQFRTVAMM 222 (383)
Q Consensus 146 ~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~---~~g~~~lp~~l~~~fr~v~~~ 222 (383)
+||++.++.+....+... +.++. +.. .|..-....++++++|++.. ......+.+.|-.++..+.+.
T Consensus 234 l~~i~~l~~~~q~~L~~~-------l~~~~--~~~-~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~ 303 (444)
T PRK15115 234 LDEIGDMPAPLQVKLLRV-------LQERK--VRP-LGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLK 303 (444)
T ss_pred EEccccCCHHHHHHHHHH-------HhhCC--EEe-CCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeec
Confidence 999999999987765433 33332 222 22222334578999998742 112235556666666677777
Q ss_pred CCCHH
Q psy6129 223 VPDRQ 227 (383)
Q Consensus 223 ~Pd~~ 227 (383)
.|...
T Consensus 304 lPpLr 308 (444)
T PRK15115 304 IPALA 308 (444)
T ss_pred CCChH
Confidence 77643
No 158
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.23 E-value=1.1e-05 Score=79.67 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHH--------Hhhh----
Q psy6129 73 LTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRI--------YKGL---- 137 (383)
Q Consensus 73 ~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~--------l~g~---- 137 (383)
...+....+-.+-.....+++.|++||||-..++++-+... .|++.+||-+- ..+-+..- |.||
T Consensus 253 ~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi-Pe~LlESELFGye~GAFTGA~~~G 331 (560)
T COG3829 253 AMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI-PETLLESELFGYEKGAFTGASKGG 331 (560)
T ss_pred HHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC-CHHHHHHHHhCcCCccccccccCC
Confidence 34444444444445667788999999999998887766664 58999999764 22223222 2343
Q ss_pred ------hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC
Q psy6129 138 ------AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP 200 (383)
Q Consensus 138 ------~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np 200 (383)
...|+.+++|||+.+|.+..+-+ ++.++++. +.. -|.+-...-++++++++|-
T Consensus 332 K~GlfE~A~gGTLFLDEIgempl~LQaKL-------LRVLQEke--i~r-vG~t~~~~vDVRIIAATN~ 390 (560)
T COG3829 332 KPGLFELANGGTLFLDEIGEMPLPLQAKL-------LRVLQEKE--IER-VGGTKPIPVDVRIIAATNR 390 (560)
T ss_pred CCcceeeccCCeEEehhhccCCHHHHHHH-------HHHHhhce--EEe-cCCCCceeeEEEEEeccCc
Confidence 24577899999999999987754 56677763 333 2333334457999999994
No 159
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=5e-05 Score=77.54 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=84.1
Q ss_pred HHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc--------------------------EEEEeCCCCCCH
Q psy6129 77 CYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY--------------------------VVVFNCSDQMDY 127 (383)
Q Consensus 77 ~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~--------------------------~~~~~c~~~~~~ 127 (383)
....+..++..+... +++||+|||||++++.+|+.+... ++.++.......
T Consensus 21 i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gv 100 (584)
T PRK14952 21 VTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGV 100 (584)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCH
Confidence 334556666665433 478999999999999999987521 223343333344
Q ss_pred HHHHHHHhhh-----hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCee-EEEeeCCC
Q psy6129 128 RGLGRIYKGL-----AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFG-IFITMNPG 201 (383)
Q Consensus 128 ~~l~~~l~g~-----~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-if~T~np~ 201 (383)
+.+..+..-+ ......+++||++++..+....+ +..+.+- .+++. ||+|.++
T Consensus 101 d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NAL-------LK~LEEp--------------p~~~~fIL~tte~- 158 (584)
T PRK14952 101 DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNAL-------LKIVEEP--------------PEHLIFIFATTEP- 158 (584)
T ss_pred HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHH-------HHHHhcC--------------CCCeEEEEEeCCh-
Confidence 4444433221 22345778899999988754433 2222211 12233 4455444
Q ss_pred CCCCCcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCC
Q psy6129 202 YAGRKELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFL 240 (383)
Q Consensus 202 ~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~ 240 (383)
+.+++.+++++..+.+..++...+.+.+ +...|..
T Consensus 159 ----~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 159 ----EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred ----HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 5899999999999999888877665544 3345643
No 160
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.22 E-value=5.1e-06 Score=84.76 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=97.3
Q ss_pred HHHHHHc-cCCC-CCcCCCCCCccHHHHHHHHHhCC--cEEEEeCCCCCCHHH-HHHH-----H--------hhh--hhc
Q psy6129 81 LAQALTM-SMGG-SPCGPAGTGKTETVKDMGKTLAK--YVVVFNCSDQMDYRG-LGRI-----Y--------KGL--AQS 140 (383)
Q Consensus 81 l~~al~~-~~~~-~l~Gp~GtGKT~~i~~la~~lg~--~~~~~~c~~~~~~~~-l~~~-----l--------~g~--~~~ 140 (383)
++.|+.. ..|+ ++.|+.||+|++.++.++..+.. |+...+ ...+... +|-+ + .|. ...
T Consensus 16 ~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p--~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah 93 (584)
T PRK13406 16 ALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLP--PGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD 93 (584)
T ss_pred HHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCC--CCCcHHHccCCchHHhHhhcCCcCCCCCceeecc
Confidence 3455555 5554 46799999999999999999976 654443 3444333 2221 2 243 345
Q ss_pred CceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHHhcc-c
Q psy6129 141 GSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKIQFR-T 218 (383)
Q Consensus 141 g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~~fr-~ 218 (383)
|..+++||+|++++.+++.+ +.++.++...+. .+|..++....|.+++|.|+ .|. ..||+.+.++|- .
T Consensus 94 ~GvL~lDe~n~~~~~~~~aL-------leame~G~vtIe-R~G~s~~~Pa~F~LIat~~~~~~~--~~L~~~lLDRf~l~ 163 (584)
T PRK13406 94 GGVLVLAMAERLEPGTAARL-------AAALDTGEVRLE-RDGLALRLPARFGLVALDEGAEED--ERAPAALADRLAFH 163 (584)
T ss_pred CCEEEecCcccCCHHHHHHH-------HHHHhCCcEEEE-ECCcEEecCCCcEEEecCCChhcc--cCCCHHhHhheEEE
Confidence 78999999999999999876 445555543333 47889999899999999887 354 789999999994 5
Q ss_pred cccCCCCHHHH
Q psy6129 219 VAMMVPDRQII 229 (383)
Q Consensus 219 v~~~~Pd~~~i 229 (383)
|.+..|+....
T Consensus 164 v~v~~~~~~~~ 174 (584)
T PRK13406 164 LDLDGLALRDA 174 (584)
T ss_pred EEcCCCChHHh
Confidence 67777765543
No 161
>KOG0739|consensus
Probab=98.21 E-value=4e-06 Score=76.49 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=79.2
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCCh---hhHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIEL---PVLS 158 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~---~~ls 158 (383)
.+.+|+|||||||+-+++++|...+..++.+..|.-++ ..-+.+++.=+. ...+.+++|||+.+-- +--|
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs 246 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES 246 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch
Confidence 46678999999999999999999998888777655332 122334443333 4578999999996521 1111
Q ss_pred HHHHHHH-HHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHHHHH
Q psy6129 159 VAAQQVA-VVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQIII 230 (383)
Q Consensus 159 ~l~~~~~-~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ 230 (383)
-.+..+. +++-+++. +.- + ++..-+..+.|-.+ .|+.+++++| +.|++..|+...=+
T Consensus 247 easRRIKTEfLVQMqG----VG~-d------~~gvLVLgATNiPw----~LDsAIRRRFekRIYIPLPe~~AR~ 305 (439)
T KOG0739|consen 247 EASRRIKTEFLVQMQG----VGN-D------NDGVLVLGATNIPW----VLDSAIRRRFEKRIYIPLPEAHARA 305 (439)
T ss_pred HHHHHHHHHHHHhhhc----ccc-C------CCceEEEecCCCch----hHHHHHHHHhhcceeccCCcHHHhh
Confidence 2222111 11212211 100 1 23455667777655 6888999999 67999999976543
No 162
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.21 E-value=1.8e-05 Score=81.71 Aligned_cols=134 Identities=17% Similarity=0.173 Sum_probs=78.1
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCC-CCHHHHHHH---------Hhhh------------
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQ-MDYRGLGRI---------YKGL------------ 137 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~-~~~~~l~~~---------l~g~------------ 137 (383)
..+|+||+|||||++++.+++.. +.+++.++|... .+...+.+. ..|+
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~ 256 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEP 256 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCch
Confidence 36689999999999999987665 356889999753 222222111 0110
Q ss_pred ------hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEe----cCCc----EEE------ecCCeeEEEe
Q psy6129 138 ------AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVF----TDGD----SIE------MCPEFGIFIT 197 (383)
Q Consensus 138 ------~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~----~~~~----~i~------~~~~~~if~T 197 (383)
..+|..+++||++.++.+....+...+ .++.-.+.. ..+. .++ ...++.++++
T Consensus 257 ~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~L-------e~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~a 329 (615)
T TIGR02903 257 KTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVL-------EDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGA 329 (615)
T ss_pred hcCchhhcCCCeEEEeccccCCHHHHHHHHHHH-------hhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEe
Confidence 125678999999999988766553333 232211100 0000 110 1123445544
Q ss_pred eCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 198 MNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 198 ~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
++.. ...+++.|+++|..+.+...+.+.+.++.
T Consensus 330 Tt~~---~~~l~~aLrSR~~~i~~~pls~edi~~Il 362 (615)
T TIGR02903 330 TTRD---PEEINPALRSRCAEVFFEPLTPEDIALIV 362 (615)
T ss_pred cccc---ccccCHHHHhceeEEEeCCCCHHHHHHHH
Confidence 3321 23688999999988887776666655554
No 163
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=4.8e-05 Score=80.65 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=84.1
Q ss_pred HHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCC--------------------------cEEEEeCCCCCCHHH
Q psy6129 79 ITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAK--------------------------YVVVFNCSDQMDYRG 129 (383)
Q Consensus 79 ~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~--------------------------~~~~~~c~~~~~~~~ 129 (383)
..|..++..+.. .+++||+|+|||++++.||+.|.. .++.++.......++
T Consensus 25 ~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~ 104 (824)
T PRK07764 25 EPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDD 104 (824)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHH
Confidence 345556665433 357899999999999999999852 123344434444555
Q ss_pred HHHHHhh-----hhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCee-EEEeeCCCCC
Q psy6129 130 LGRIYKG-----LAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFG-IFITMNPGYA 203 (383)
Q Consensus 130 l~~~l~g-----~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-if~T~np~~~ 203 (383)
+..+..- .......+++||++++..+....| ++-+.+- .+++. ||+|.++
T Consensus 105 iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaL-------LK~LEEp--------------P~~~~fIl~tt~~--- 160 (824)
T PRK07764 105 ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNAL-------LKIVEEP--------------PEHLKFIFATTEP--- 160 (824)
T ss_pred HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHH-------HHHHhCC--------------CCCeEEEEEeCCh---
Confidence 5544322 223345778999999988765433 2222211 12233 4445333
Q ss_pred CCCcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCCc
Q psy6129 204 GRKELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFLE 241 (383)
Q Consensus 204 g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~~ 241 (383)
..|...+++++..+.+..++.+.+.+.+ +...|...
T Consensus 161 --~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 161 --DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred --hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 3588899999999999888877766544 33456543
No 164
>KOG0727|consensus
Probab=98.19 E-value=4e-06 Score=74.75 Aligned_cols=132 Identities=20% Similarity=0.222 Sum_probs=76.6
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhh-hhcCceEEecccccCChhhH
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGL-AQSGSWGCFDEFNRIELPVL 157 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~-~~~g~w~~~dein~l~~~~l 157 (383)
+..-.|++++||||||||+++|++|+...-.++.++.|+-. .+..+..++.=+ -...+.+++||++.+...-.
T Consensus 186 idpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrf 265 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRF 265 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhc
Confidence 34567889999999999999999999988888888876532 111122222222 23467899999985422110
Q ss_pred H---HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHH---HhccccccCCCCHHH
Q psy6129 158 S---VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLK---IQFRTVAMMVPDRQI 228 (383)
Q Consensus 158 s---~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~---~~fr~v~~~~Pd~~~ 228 (383)
. ..-..++.|+-.+......|.. ..|..++++.|.. ..|+++|. ++=|.+.+..||...
T Consensus 266 daqtgadrevqril~ellnqmdgfdq--------~~nvkvimatnra----dtldpallrpgrldrkiefplpdrrq 330 (408)
T KOG0727|consen 266 DAQTGADREVQRILIELLNQMDGFDQ--------TTNVKVIMATNRA----DTLDPALLRPGRLDRKIEFPLPDRRQ 330 (408)
T ss_pred cccccccHHHHHHHHHHHHhccCcCc--------ccceEEEEecCcc----cccCHhhcCCccccccccCCCCchhh
Confidence 0 0011122222222222222221 2456678888853 35667665 334678888898643
No 165
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=6e-05 Score=73.31 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=86.6
Q ss_pred HHHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCCc----------E--EEEeCCCCCCHHHHHHHHhhhh---
Q psy6129 77 CYITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAKY----------V--VVFNCSDQMDYRGLGRIYKGLA--- 138 (383)
Q Consensus 77 ~~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~~----------~--~~~~c~~~~~~~~l~~~l~g~~--- 138 (383)
....+..++..+.. .+++||+|+|||++++.+|+.+..+ + +.++.....+.+.+.+++..+.
T Consensus 25 ~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p 104 (367)
T PRK14970 25 ITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPP 104 (367)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhcc
Confidence 34456666665432 3478999999999999999988541 1 2233333344566766665432
Q ss_pred --hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc
Q psy6129 139 --QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF 216 (383)
Q Consensus 139 --~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f 216 (383)
.....+++||++.+....+..+ +..+.+. .+++.+++++| .+..+.+.+++++
T Consensus 105 ~~~~~kiviIDE~~~l~~~~~~~l-------l~~le~~--------------~~~~~~Il~~~----~~~kl~~~l~sr~ 159 (367)
T PRK14970 105 QTGKYKIYIIDEVHMLSSAAFNAF-------LKTLEEP--------------PAHAIFILATT----EKHKIIPTILSRC 159 (367)
T ss_pred ccCCcEEEEEeChhhcCHHHHHHH-------HHHHhCC--------------CCceEEEEEeC----CcccCCHHHHhcc
Confidence 2335788999998776543322 2222110 12344555554 2468888999999
Q ss_pred cccccCCCCHHHHHHHHH---hhcCCC
Q psy6129 217 RTVAMMVPDRQIIIRVKL---ASCGFL 240 (383)
Q Consensus 217 r~v~~~~Pd~~~i~ei~l---~~~gf~ 240 (383)
+.+.+..|+...+.+.+. ...|..
T Consensus 160 ~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 160 QIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred eeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 999999988877665543 355654
No 166
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=6.4e-05 Score=75.44 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC-------cE-----------------EEEeCCCCCCH
Q psy6129 75 DRCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK-------YV-----------------VVFNCSDQMDY 127 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~-------~~-----------------~~~~c~~~~~~ 127 (383)
+.....+..+++.+... +++||+|+|||++++.+|+.+.. || +.++.+.....
T Consensus 22 ~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gv 101 (486)
T PRK14953 22 EIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGI 101 (486)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCH
Confidence 33445667777765544 47999999999999999998862 11 11222222333
Q ss_pred HHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC
Q psy6129 128 RGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY 202 (383)
Q Consensus 128 ~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~ 202 (383)
+++..+...+. ..-..+++||++++..+....+ +..+.+. ++++.++++++.
T Consensus 102 d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naL-------Lk~LEep--------------p~~~v~Il~tt~-- 158 (486)
T PRK14953 102 DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNAL-------LKTLEEP--------------PPRTIFILCTTE-- 158 (486)
T ss_pred HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHH-------HHHHhcC--------------CCCeEEEEEECC--
Confidence 44444433221 1224678899998876654332 2222110 123334444331
Q ss_pred CCCCcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCCc
Q psy6129 203 AGRKELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFLE 241 (383)
Q Consensus 203 ~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~~ 241 (383)
...+++.+++++..+.+..|+...+.+.+ +...|..-
T Consensus 159 --~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i 198 (486)
T PRK14953 159 --YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY 198 (486)
T ss_pred --HHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 24688999999999999888877766544 33456553
No 167
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00018 Score=69.50 Aligned_cols=185 Identities=21% Similarity=0.199 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHccCCC--CCcCCCCCCccHHHHHHHHHhCCc-----EEEEeCCCCCCHHH-HHHHHhh---------
Q psy6129 74 TDRCYITLAQALTMSMGG--SPCGPAGTGKTETVKDMGKTLAKY-----VVVFNCSDQMDYRG-LGRIYKG--------- 136 (383)
Q Consensus 74 t~r~~~~l~~al~~~~~~--~l~Gp~GtGKT~~i~~la~~lg~~-----~~~~~c~~~~~~~~-l~~~l~g--------- 136 (383)
.+++...+..++....|. +++||+|||||.+++.+++.+-.. ++.+||...-++.. +.+++..
T Consensus 26 i~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~ 105 (366)
T COG1474 26 INQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGD 105 (366)
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCC
Confidence 444455556666666554 468999999999999999988554 78999998777655 5555431
Q ss_pred ------------hhhc--CceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC
Q psy6129 137 ------------LAQS--GSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY 202 (383)
Q Consensus 137 ------------~~~~--g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~ 202 (383)
.... -..+++||+|.+....-..+ ..+.++ .. .+ +-.+.+++..|.-.
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~L----Y~L~r~---~~------~~-----~~~v~vi~i~n~~~ 167 (366)
T COG1474 106 SSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVL----YSLLRA---PG------EN-----KVKVSIIAVSNDDK 167 (366)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHH----HHHHhh---cc------cc-----ceeEEEEEEeccHH
Confidence 1122 23567899998766643222 122211 11 11 23345666666421
Q ss_pred CCCCcchHHHHHhccccccCCCC--HHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHH
Q psy6129 203 AGRKELPENLKIQFRTVAMMVPD--RQIIIRVKLA--SCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLR 278 (383)
Q Consensus 203 ~g~~~lp~~l~~~fr~v~~~~Pd--~~~i~ei~l~--~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~ 278 (383)
. ...+.+++++++.+..+..|+ ...+.+|+-. ..||... .+++....+....... .|- ..|--..+++
T Consensus 168 ~-~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~----~~G--DAR~aidilr 239 (366)
T COG1474 168 F-LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAA----ESG--DARKAIDILR 239 (366)
T ss_pred H-HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHH----cCc--cHHHHHHHHH
Confidence 1 567889999999877766665 4566666543 2445432 1222222222222222 222 3566667777
Q ss_pred hcchhh
Q psy6129 279 SLGAAK 284 (383)
Q Consensus 279 ~~~~~~ 284 (383)
.|+...
T Consensus 240 ~A~eiA 245 (366)
T COG1474 240 RAGEIA 245 (366)
T ss_pred HHHHHH
Confidence 776553
No 168
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4.6e-06 Score=81.05 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcE----------EEE------------------eCCCCCCH
Q psy6129 76 RCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYV----------VVF------------------NCSDQMDY 127 (383)
Q Consensus 76 r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~----------~~~------------------~c~~~~~~ 127 (383)
.+-..+.-|-..+++.+++||||||||++++-+...|.--. +.+ .-++.+..
T Consensus 186 ~AKrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~ 265 (490)
T COG0606 186 QAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLA 265 (490)
T ss_pred HHHHHHHHHHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHH
Confidence 34456666667788888999999999999987776653110 000 00000011
Q ss_pred HHHHHH---Hhh--hhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC
Q psy6129 128 RGLGRI---YKG--LAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP 200 (383)
Q Consensus 128 ~~l~~~---l~g--~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np 200 (383)
+-+|.. -.| ....|..+++||+-.....+|..+.+.+ +.+...+...+..|..+-+|+++++|||
T Consensus 266 aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PL--------E~g~i~IsRa~~~v~ypa~Fqlv~AmNp 335 (490)
T COG0606 266 ALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPL--------ENGKIIISRAGSKVTYPARFQLVAAMNP 335 (490)
T ss_pred HHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCcc--------ccCcEEEEEcCCeeEEeeeeEEhhhcCC
Confidence 111111 012 2456789999999988888887765544 3333333346778888999999999999
No 169
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.17 E-value=7.4e-05 Score=65.48 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=84.0
Q ss_pred HHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCC-CCCHHHHH
Q psy6129 80 TLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSD-QMDYRGLG 131 (383)
Q Consensus 80 ~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~-~~~~~~l~ 131 (383)
.+..++..+.. .++.||+|+|||++++.+|+.+-.. +..+.-.. ....+.+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~ 82 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVR 82 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHH
Confidence 45556665533 3468999999999999999887321 23332222 34455565
Q ss_pred HHHhhhhh-----cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCC
Q psy6129 132 RIYKGLAQ-----SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRK 206 (383)
Q Consensus 132 ~~l~g~~~-----~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~ 206 (383)
.++.-+.. ....+++||++++..+....+ +..+.+. .++..+++++|. ..
T Consensus 83 ~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~L-------l~~le~~--------------~~~~~~il~~~~----~~ 137 (188)
T TIGR00678 83 ELVEFLSRTPQESGRRVVIIEDAERMNEAAANAL-------LKTLEEP--------------PPNTLFILITPS----PE 137 (188)
T ss_pred HHHHHHccCcccCCeEEEEEechhhhCHHHHHHH-------HHHhcCC--------------CCCeEEEEEECC----hH
Confidence 55544322 234677899999888765432 2222110 133445555542 15
Q ss_pred cchHHHHHhccccccCCCCHHHHHHHHHhhcCC
Q psy6129 207 ELPENLKIQFRTVAMMVPDRQIIIRVKLASCGF 239 (383)
Q Consensus 207 ~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf 239 (383)
.+++.+++++..+.+..|+.+.+.+++-.. |+
T Consensus 138 ~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-gi 169 (188)
T TIGR00678 138 KLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-GI 169 (188)
T ss_pred hChHHHHhhcEEeeCCCCCHHHHHHHHHHc-CC
Confidence 889999999999999999988887766543 54
No 170
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=6.7e-05 Score=73.71 Aligned_cols=130 Identities=13% Similarity=0.129 Sum_probs=80.6
Q ss_pred HHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCCc--------------------------------EEEEeCCC
Q psy6129 79 ITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAKY--------------------------------VVVFNCSD 123 (383)
Q Consensus 79 ~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~~--------------------------------~~~~~c~~ 123 (383)
..+..++..+.- .+++||+|+|||++++.+|+.+... ++.++...
T Consensus 26 ~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~ 105 (397)
T PRK14955 26 RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAAS 105 (397)
T ss_pred HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccc
Confidence 355666666544 3478999999999999999988542 22333333
Q ss_pred CCCHHHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEee
Q psy6129 124 QMDYRGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITM 198 (383)
Q Consensus 124 ~~~~~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~ 198 (383)
....+++.++...+. .....+++||++++..+....+ +..+.+ ..+.+.+++++
T Consensus 106 ~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~L-------Lk~LEe--------------p~~~t~~Il~t 164 (397)
T PRK14955 106 NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAF-------LKTLEE--------------PPPHAIFIFAT 164 (397)
T ss_pred cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHH-------HHHHhc--------------CCCCeEEEEEe
Confidence 334555655554442 2234677899998887544332 222211 01334444444
Q ss_pred CCCCCCCCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 199 NPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 199 np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
+ ....+.+.+++++..+.+..++...+.+.+
T Consensus 165 ~----~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l 195 (397)
T PRK14955 165 T----ELHKIPATIASRCQRFNFKRIPLEEIQQQL 195 (397)
T ss_pred C----ChHHhHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3 236888899999999999888877766544
No 171
>PRK05642 DNA replication initiation factor; Validated
Probab=98.16 E-value=1.8e-05 Score=71.99 Aligned_cols=124 Identities=10% Similarity=0.062 Sum_probs=73.0
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAV 166 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~ 166 (383)
+..++||+|+|||.+++++++.+ |..++.+++.+-+.. ...++.. ......+++||++.+.... ...+.+..
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--~~~~~~~-~~~~d~LiiDDi~~~~~~~--~~~~~Lf~ 121 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--GPELLDN-LEQYELVCLDDLDVIAGKA--DWEEALFH 121 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--hHHHHHh-hhhCCEEEEechhhhcCCh--HHHHHHHH
Confidence 34588999999999999988654 556666665443221 1222222 2344688999999765432 11222333
Q ss_pred HHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc---cccccCCCCHHHHHHHHH
Q psy6129 167 VLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF---RTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f---r~v~~~~Pd~~~i~ei~l 234 (383)
+.+...+++ ..+++|.+..-..-....+.+++|| ..+.+..||.+...+++.
T Consensus 122 l~n~~~~~g----------------~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 122 LFNRLRDSG----------------RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred HHHHHHhcC----------------CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 444333322 1244454421112234467899999 677888889887777654
No 172
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.15 E-value=2e-05 Score=75.11 Aligned_cols=83 Identities=14% Similarity=-0.018 Sum_probs=54.2
Q ss_pred CceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCC--CcchHHHHHhcc
Q psy6129 141 GSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGR--KELPENLKIQFR 217 (383)
Q Consensus 141 g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~--~~lp~~l~~~fr 217 (383)
++.+.|+|+.+++.+.+..+ +..++++ .+.. .+....+.-+..|++|+|+ +|..+ .+.+++|++|+.
T Consensus 237 rGi~~f~Ei~K~~~~~l~~L-------L~~~qE~--~v~~-~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~ 306 (361)
T smart00763 237 RGILEFVEMFKADIKFLHPL-------LTATQEG--NIKG-TGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRII 306 (361)
T ss_pred CceEEEeehhcCCHHHHHHH-------hhhhhcc--eEec-CCcccccccceEEEEeCCHHHHhhhhccccchhhhhceE
Confidence 45677889888888876654 4455554 3332 2332233345588999999 45433 355899999999
Q ss_pred ccccCCCC-HHHHHHHH
Q psy6129 218 TVAMMVPD-RQIIIRVK 233 (383)
Q Consensus 218 ~v~~~~Pd-~~~i~ei~ 233 (383)
.+.+.+|- .+..++|+
T Consensus 307 ~i~vpY~l~~~~E~~Iy 323 (361)
T smart00763 307 KVKVPYCLRVSEEAQIY 323 (361)
T ss_pred EEeCCCcCCHHHHHHHH
Confidence 98887764 55555555
No 173
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.15 E-value=3e-05 Score=77.80 Aligned_cols=144 Identities=13% Similarity=0.164 Sum_probs=89.7
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhh--------h--
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKG--------L-- 137 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g--------~-- 137 (383)
+|...+.+..+........+.++.|++||||+.+++.+.+... .|++.+||..-.+ +.+...+-| +
T Consensus 140 s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~ 218 (463)
T TIGR01818 140 APAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLIESELFGHEKGAFTGANT 218 (463)
T ss_pred CHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHHHHHhcCCCCCCCCCccc
Confidence 3444555555555445566677899999999999998887654 5899999988633 334433322 1
Q ss_pred -------hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCc
Q psy6129 138 -------AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKE 207 (383)
Q Consensus 138 -------~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~ 207 (383)
...|..+++||++.++.++...+.+. +.++ .+.. .|..-....++++++|+|.+- .....
T Consensus 219 ~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~-------l~~~--~~~~-~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 288 (463)
T TIGR01818 219 RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRV-------LADG--EFYR-VGGRTPIKVDVRIVAATHQNLEALVRQGK 288 (463)
T ss_pred CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHH-------HhcC--cEEE-CCCCceeeeeeEEEEeCCCCHHHHHHcCC
Confidence 22467799999999999886655333 2332 2222 122222335688999998642 12234
Q ss_pred chHHHHHhccccccCCCC
Q psy6129 208 LPENLKIQFRTVAMMVPD 225 (383)
Q Consensus 208 lp~~l~~~fr~v~~~~Pd 225 (383)
+.+.|..++..+.+..|.
T Consensus 289 f~~~L~~rl~~~~i~lPp 306 (463)
T TIGR01818 289 FREDLFHRLNVIRIHLPP 306 (463)
T ss_pred cHHHHHHHhCcceecCCC
Confidence 555666666656666565
No 174
>KOG0989|consensus
Probab=98.15 E-value=2e-05 Score=72.33 Aligned_cols=131 Identities=18% Similarity=0.149 Sum_probs=77.7
Q ss_pred HHHHHHHHHcc-CCC-CCcCCCCCCccHHHHHHHHHhCCc----EE--EEeCCCCCCHHHHHHHHhh---h---------
Q psy6129 78 YITLAQALTMS-MGG-SPCGPAGTGKTETVKDMGKTLAKY----VV--VFNCSDQMDYRGLGRIYKG---L--------- 137 (383)
Q Consensus 78 ~~~l~~al~~~-~~~-~l~Gp~GtGKT~~i~~la~~lg~~----~~--~~~c~~~~~~~~l~~~l~g---~--------- 137 (383)
...+..++... .+. +++||||||||+++..+|+.+.-+ +- ..|-|.....+.+..-+++ +
T Consensus 45 V~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~ 124 (346)
T KOG0989|consen 45 VQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDG 124 (346)
T ss_pred HHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccC
Confidence 34445555543 333 258999999999999999988532 11 1233332222211111111 1
Q ss_pred --hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHh
Q psy6129 138 --AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQ 215 (383)
Q Consensus 138 --~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~ 215 (383)
+..=..++|||.+.+..+..+.+..-+ ++ + ....+|+.-+|. -..||..+.+|
T Consensus 125 ~~~~~fKiiIlDEcdsmtsdaq~aLrr~m--------E~-----~--------s~~trFiLIcny----lsrii~pi~SR 179 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDAQAALRRTM--------ED-----F--------SRTTRFILICNY----LSRIIRPLVSR 179 (346)
T ss_pred CCCCcceEEEEechhhhhHHHHHHHHHHH--------hc-----c--------ccceEEEEEcCC----hhhCChHHHhh
Confidence 112257889999999998877653222 11 0 123456666662 36899999999
Q ss_pred ccccccCCCCHHHHHHHH
Q psy6129 216 FRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 216 fr~v~~~~Pd~~~i~ei~ 233 (383)
+..+.+..-+.+.++..+
T Consensus 180 C~KfrFk~L~d~~iv~rL 197 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRL 197 (346)
T ss_pred HHHhcCCCcchHHHHHHH
Confidence 988888766666555544
No 175
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=5.4e-05 Score=77.23 Aligned_cols=130 Identities=17% Similarity=0.221 Sum_probs=82.2
Q ss_pred HHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l 130 (383)
...+..++..+..+ +++||+|+|||++++.+|+.+... ++.++.......+++
T Consensus 25 v~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddI 104 (563)
T PRK06647 25 VETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDV 104 (563)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHH
Confidence 34566677766555 578999999999999999998632 233333333455566
Q ss_pred HHHHhhh-----hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeE-EEeeCCCCCC
Q psy6129 131 GRIYKGL-----AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGI-FITMNPGYAG 204 (383)
Q Consensus 131 ~~~l~g~-----~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~i-f~T~np~~~g 204 (383)
..+...+ ......+++||+++++.+....+ +..+.+ ..+.+.| |+|.++
T Consensus 105 r~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naL-------LK~LEe--------------pp~~~vfI~~tte~---- 159 (563)
T PRK06647 105 RQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNAL-------LKTIEE--------------PPPYIVFIFATTEV---- 159 (563)
T ss_pred HHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHH-------HHhhcc--------------CCCCEEEEEecCCh----
Confidence 5554332 22345778899999887654432 211111 1123334 344333
Q ss_pred CCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 205 RKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 205 ~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
..+++.+++++..+.+..++.+.+.+.+
T Consensus 160 -~kL~~tI~SRc~~~~f~~l~~~el~~~L 187 (563)
T PRK06647 160 -HKLPATIKSRCQHFNFRLLSLEKIYNML 187 (563)
T ss_pred -HHhHHHHHHhceEEEecCCCHHHHHHHH
Confidence 5799999999999999888877765544
No 176
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=0.0002 Score=71.33 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=82.5
Q ss_pred ceeechhhHHHHHHHHHHHHcc-----CCCCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCH--HHHHH--
Q psy6129 67 RLVITPLTDRCYITLAQALTMS-----MGGSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDY--RGLGR-- 132 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~~-----~~~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~--~~l~~-- 132 (383)
.+|..|....++. .+.++..+ .+..++||+|+|||++++++++.+ |..++.+++.+-+.. ..++.
T Consensus 116 nFv~g~~n~~A~~-aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~ 194 (450)
T PRK14087 116 NFVIGSSNEQAFI-AVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH 194 (450)
T ss_pred cccCCCcHHHHHH-HHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh
Confidence 4566664443443 33333221 234579999999999999999855 344555555331110 00111
Q ss_pred -H---HhhhhhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcc
Q psy6129 133 -I---YKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKEL 208 (383)
Q Consensus 133 -~---l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~l 208 (383)
. +..-...-.++++||++.+...- ...+.+..+.+.+.+.+. ++++|+|-.-.--..+
T Consensus 195 ~~~~~~~~~~~~~dvLiIDDiq~l~~k~--~~~e~lf~l~N~~~~~~k----------------~iIltsd~~P~~l~~l 256 (450)
T PRK14087 195 KEIEQFKNEICQNDVLIIDDVQFLSYKE--KTNEIFFTIFNNFIENDK----------------QLFFSSDKSPELLNGF 256 (450)
T ss_pred hHHHHHHHHhccCCEEEEeccccccCCH--HHHHHHHHHHHHHHHcCC----------------cEEEECCCCHHHHhhc
Confidence 0 11112345689999999776321 112233334444443321 2455654211112457
Q ss_pred hHHHHHhcc---ccccCCCCHHHHHHHHH
Q psy6129 209 PENLKIQFR---TVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 209 p~~l~~~fr---~v~~~~Pd~~~i~ei~l 234 (383)
.+++++||. .+.+..||.+...+++.
T Consensus 257 ~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 257 DNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 789999996 67788999888777763
No 177
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=0.00012 Score=72.95 Aligned_cols=131 Identities=16% Similarity=0.166 Sum_probs=82.3
Q ss_pred HHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCCc-------------------------EEEEeCCCCCCHHHH
Q psy6129 79 ITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAKY-------------------------VVVFNCSDQMDYRGL 130 (383)
Q Consensus 79 ~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~~-------------------------~~~~~c~~~~~~~~l 130 (383)
..+..++..+.. .+++||+|+|||++++.+|+.+... ++.++.......+++
T Consensus 27 ~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~i 106 (451)
T PRK06305 27 AVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDI 106 (451)
T ss_pred HHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccCCHHHH
Confidence 345556665433 2478999999999999999987431 333444334444555
Q ss_pred HHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 131 GRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 131 ~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
..+..-+. ....++++||++++..+....+ ++.+.+. .+.+.+++++| ..
T Consensus 107 r~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~L-------Lk~lEep--------------~~~~~~Il~t~----~~ 161 (451)
T PRK06305 107 RQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSL-------LKTLEEP--------------PQHVKFFLATT----EI 161 (451)
T ss_pred HHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHH-------HHHhhcC--------------CCCceEEEEeC----Ch
Confidence 54433221 3346788999998876654322 2222111 12344444544 23
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHH
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l 234 (383)
..+.+.+++++..+.+..++.+.+.+.+.
T Consensus 162 ~kl~~tI~sRc~~v~f~~l~~~el~~~L~ 190 (451)
T PRK06305 162 HKIPGTILSRCQKMHLKRIPEETIIDKLA 190 (451)
T ss_pred HhcchHHHHhceEEeCCCCCHHHHHHHHH
Confidence 67899999999999999999888776553
No 178
>PRK04132 replication factor C small subunit; Provisional
Probab=98.07 E-value=7.3e-05 Score=78.95 Aligned_cols=114 Identities=12% Similarity=0.103 Sum_probs=86.3
Q ss_pred CCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHHHHHHHHhhhhh----cC---ceEEecccccCChhhHHHHHHH
Q psy6129 96 PAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRGLGRIYKGLAQ----SG---SWGCFDEFNRIELPVLSVAAQQ 163 (383)
Q Consensus 96 p~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~~l~~~l~g~~~----~g---~w~~~dein~l~~~~ls~l~~~ 163 (383)
|.+.|||+++..+|+.+ +.+++.+|+++....+.+.++++.+++ .| ..+++||+++++.+....+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnAL--- 650 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQAL--- 650 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHH---
Confidence 77789999999999987 557899999998888888888876542 12 4788999999987654433
Q ss_pred HHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHH
Q psy6129 164 VAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l 234 (383)
++.+.+. .+++.|++++|+. ..+++.+++++..+.+..|+.+.+.+.+.
T Consensus 651 ----Lk~lEep--------------~~~~~FILi~N~~----~kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 651 ----RRTMEMF--------------SSNVRFILSCNYS----SKIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ----HHHhhCC--------------CCCeEEEEEeCCh----hhCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 2111110 1456788888863 58889999999999999999888776653
No 179
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00014 Score=74.94 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=81.8
Q ss_pred HHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc-------------------------EEEEeCCCCCCHHH
Q psy6129 78 YITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY-------------------------VVVFNCSDQMDYRG 129 (383)
Q Consensus 78 ~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~-------------------------~~~~~c~~~~~~~~ 129 (383)
...+..++..+..+ +++||+|+|||++++.+|+.++.. ++.++.+.....++
T Consensus 25 ~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ 104 (585)
T PRK14950 25 VQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDD 104 (585)
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHH
Confidence 34455666655444 579999999999999999988521 23334434455555
Q ss_pred HHHHHhhh-----hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCC
Q psy6129 130 LGRIYKGL-----AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAG 204 (383)
Q Consensus 130 l~~~l~g~-----~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g 204 (383)
+..+..-+ ......+++||++++..+....+ +..+.+. .+++.|+++.+ .
T Consensus 105 ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naL-------Lk~LEep--------------p~~tv~Il~t~----~ 159 (585)
T PRK14950 105 AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNAL-------LKTLEEP--------------PPHAIFILATT----E 159 (585)
T ss_pred HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHH-------HHHHhcC--------------CCCeEEEEEeC----C
Confidence 55544321 12345778999998887654433 2222111 12344444443 1
Q ss_pred CCcchHHHHHhccccccCCCCHHHHHHHHH
Q psy6129 205 RKELPENLKIQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 205 ~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l 234 (383)
...+++.+++++..+.+..++...+.+.+.
T Consensus 160 ~~kll~tI~SR~~~i~f~~l~~~el~~~L~ 189 (585)
T PRK14950 160 VHKVPATILSRCQRFDFHRHSVADMAAHLR 189 (585)
T ss_pred hhhhhHHHHhccceeeCCCCCHHHHHHHHH
Confidence 356888899999999998888777766553
No 180
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00012 Score=75.09 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=83.8
Q ss_pred HHHHHHHHccC---CCCCcCCCCCCccHHHHHHHHHhCCcE-----------------------------EEEeCCCCCC
Q psy6129 79 ITLAQALTMSM---GGSPCGPAGTGKTETVKDMGKTLAKYV-----------------------------VVFNCSDQMD 126 (383)
Q Consensus 79 ~~l~~al~~~~---~~~l~Gp~GtGKT~~i~~la~~lg~~~-----------------------------~~~~c~~~~~ 126 (383)
..+..++..+. ..+++||+|+|||++++.+|+.+.... +.++-...+.
T Consensus 34 ~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~g 113 (598)
T PRK09111 34 RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTG 113 (598)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCC
Confidence 44555665554 345799999999999999999885321 1122223344
Q ss_pred HHHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 127 YRGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 127 ~~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
.+++..++..+. .....+++||+++++.+....+ +..+.+- .+++.|+++++
T Consensus 114 vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naL-------LKtLEeP--------------p~~~~fIl~tt-- 170 (598)
T PRK09111 114 VDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNAL-------LKTLEEP--------------PPHVKFIFATT-- 170 (598)
T ss_pred HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHH-------HHHHHhC--------------CCCeEEEEEeC--
Confidence 555655554432 2234678899998877654332 2222211 13344444443
Q ss_pred CCCCCcchHHHHHhccccccCCCCHHHHHHHH---HhhcCCCch
Q psy6129 202 YAGRKELPENLKIQFRTVAMMVPDRQIIIRVK---LASCGFLEN 242 (383)
Q Consensus 202 ~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~~~ 242 (383)
...+++..+++++..+.+..|+...+.+.+ +...|..-.
T Consensus 171 --e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~ 212 (598)
T PRK09111 171 --EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE 212 (598)
T ss_pred --ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 124688889999999999999887766544 334555433
No 181
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.02 E-value=3e-05 Score=79.60 Aligned_cols=186 Identities=17% Similarity=0.206 Sum_probs=113.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEE-eCCCCC--CHHHH-----HH-HH-hhh--hhcCceEEecccccCChhhHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVF-NCSDQM--DYRGL-----GR-IY-KGL--AQSGSWGCFDEFNRIELPVLS 158 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~-~c~~~~--~~~~l-----~~-~l-~g~--~~~g~w~~~dein~l~~~~ls 158 (383)
++|+|.|||||+.+.+.+++.+.+-+++- .++... +.... +. .+ .|+ ...|+.+|+||||+++.+..+
T Consensus 322 ILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~ 401 (682)
T COG1241 322 ILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRV 401 (682)
T ss_pred EEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHH
Confidence 35799999999999999999998876543 333322 22111 22 12 243 466889999999999998877
Q ss_pred HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC---C------CCcchHHHHHhcccccc--CCCCHH
Q psy6129 159 VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA---G------RKELPENLKIQFRTVAM--MVPDRQ 227 (383)
Q Consensus 159 ~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~---g------~~~lp~~l~~~fr~v~~--~~Pd~~ 227 (383)
++- .++. .+..-+-..|-.-.++..|.+.++.||.++ . .-.||+.|.+||-.+.+ +.||.+
T Consensus 402 aih-------EaME-QQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~ 473 (682)
T COG1241 402 AIH-------EAME-QQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEE 473 (682)
T ss_pred HHH-------HHHH-hcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCcc
Confidence 653 2332 221112234545567788999999999653 1 23678999999976654 566632
Q ss_pred ---HHHHHHHhhc---------------------------------C--C-CchHHHHHHHHHHHHHHHHhc---cCCCC
Q psy6129 228 ---IIIRVKLASC---------------------------------G--F-LENITLARKFYTLYKLCEEQL---TKQVH 265 (383)
Q Consensus 228 ---~i~ei~l~~~---------------------------------g--f-~~~~~la~ki~~~~~~~~~~l---s~~~h 265 (383)
.+++-.+... - + .-..+..+++...|...++.- +....
T Consensus 474 ~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~ 553 (682)
T COG1241 474 KDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRT 553 (682)
T ss_pred chHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCc
Confidence 3333333221 0 0 112345556777777666431 12233
Q ss_pred CccChhhhHHHHHhcchhh
Q psy6129 266 YDFGLRNILSVLRSLGAAK 284 (383)
Q Consensus 266 y~f~lR~l~~vi~~~~~~~ 284 (383)
+-.+-|.|.++++.+.+..
T Consensus 554 ~piT~RqLEsiiRLaeA~A 572 (682)
T COG1241 554 IPITARQLESIIRLAEAHA 572 (682)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 4456888888888765543
No 182
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.98 E-value=0.00062 Score=66.09 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=85.8
Q ss_pred ceeechhhHHHHHHHHHHHHc----cCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhhhhh
Q psy6129 67 RLVITPLTDRCYITLAQALTM----SMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKGLAQ 139 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~----~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g~~~ 139 (383)
.+|.+|....++......-.. ..|..|+||+|.|||.++++.+.... ...-++.-+. ...+...+..+..
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s---e~f~~~~v~a~~~ 164 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS---EDFTNDFVKALRD 164 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH---HHHHHHHHHHHHh
Confidence 688888766665554443332 34556899999999999999887663 3233333222 1222222222111
Q ss_pred ----------cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcch
Q psy6129 140 ----------SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELP 209 (383)
Q Consensus 140 ----------~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp 209 (383)
+-..+++||+..+....- ..+.+..+.+.+.+.++ ++++|+.-.-..-..+-
T Consensus 165 ~~~~~Fk~~y~~dlllIDDiq~l~gk~~--~qeefFh~FN~l~~~~k----------------qIvltsdr~P~~l~~~~ 226 (408)
T COG0593 165 NEMEKFKEKYSLDLLLIDDIQFLAGKER--TQEEFFHTFNALLENGK----------------QIVLTSDRPPKELNGLE 226 (408)
T ss_pred hhHHHHHHhhccCeeeechHhHhcCChh--HHHHHHHHHHHHHhcCC----------------EEEEEcCCCchhhcccc
Confidence 455788999997655431 12233333444444322 34445431111123455
Q ss_pred HHHHHhcc---ccccCCCCHHHHHHHHHh
Q psy6129 210 ENLKIQFR---TVAMMVPDRQIIIRVKLA 235 (383)
Q Consensus 210 ~~l~~~fr---~v~~~~Pd~~~i~ei~l~ 235 (383)
++|++||. .+.+..||.+..+.++..
T Consensus 227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 227 DRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred HHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 89999995 678899999988877654
No 183
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.95 E-value=3.4e-06 Score=80.70 Aligned_cols=131 Identities=19% Similarity=0.275 Sum_probs=73.1
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEE--eCC-CCCCHHHH------HHHH-hhh--hhcCceEEecccccCChhh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVF--NCS-DQMDYRGL------GRIY-KGL--AQSGSWGCFDEFNRIELPV 156 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~--~c~-~~~~~~~l------~~~l-~g~--~~~g~w~~~dein~l~~~~ 156 (383)
...+++|.|||||+.+.+..++...+-+++- +++ .+++.... +..+ .|+ ...|+.+|+||+++++.+.
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~ 137 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDD 137 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHH
T ss_pred cceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchH
Confidence 3456899999999999998887776665433 111 12221111 1122 243 5688999999999999987
Q ss_pred HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC---------CCCcchHHHHHhcccccc--CCCC
Q psy6129 157 LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA---------GRKELPENLKIQFRTVAM--MVPD 225 (383)
Q Consensus 157 ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~---------g~~~lp~~l~~~fr~v~~--~~Pd 225 (383)
.+.+ +.++.. +..-+...|....++-.+.+++++||.+. ..-.+|+.|.++|--+.+ +.||
T Consensus 138 ~~~l-------~eaMEq-q~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d 209 (331)
T PF00493_consen 138 RDAL-------HEAMEQ-QTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPD 209 (331)
T ss_dssp HHHH-------HHHHHC-SCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT
T ss_pred HHHH-------HHHHHc-CeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccc
Confidence 6654 334433 33333345677788899999999999542 123688899999975543 5666
Q ss_pred HH
Q psy6129 226 RQ 227 (383)
Q Consensus 226 ~~ 227 (383)
.+
T Consensus 210 ~~ 211 (331)
T PF00493_consen 210 EE 211 (331)
T ss_dssp -H
T ss_pred cc
Confidence 43
No 184
>KOG0740|consensus
Probab=97.92 E-value=8.4e-06 Score=78.95 Aligned_cols=132 Identities=20% Similarity=0.168 Sum_probs=80.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH-----HHHHHHHhhhh--hcCceEEecccccCChhhHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY-----RGLGRIYKGLA--QSGSWGCFDEFNRIELPVLSVAA 161 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~-----~~l~~~l~g~~--~~g~w~~~dein~l~~~~ls~l~ 161 (383)
.+.+|.||+|||||.+++++|...+--++.+..++-++. +.+.|.+-.++ ..-+.+++||++++ ++
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidsl-------ls 259 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSL-------LS 259 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHH-------Hh
Confidence 355689999999999999999999988877766654432 23444444443 34566678998843 11
Q ss_pred HHHHHHH-HHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHHHHHH
Q psy6129 162 QQVAVVL-AAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQIIIR 231 (383)
Q Consensus 162 ~~~~~i~-~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~e 231 (383)
+....-. .+.+.+.+.....+|.....++...+++|.|-. .+++++++++| +.+++..||.+.=.+
T Consensus 260 ~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P----~e~Dea~~Rrf~kr~yiplPd~etr~~ 327 (428)
T KOG0740|consen 260 KRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRP----WELDEAARRRFVKRLYIPLPDYETRSL 327 (428)
T ss_pred hcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCc----hHHHHHHHHHhhceeeecCCCHHHHHH
Confidence 1100000 000000000001134444556678888888843 68999999999 566789999775433
No 185
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2e-05 Score=72.61 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=50.9
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHH----HHHHH----hhh-----hhcCceEEecccccCCh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRG----LGRIY----KGL-----AQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~----l~~~l----~g~-----~~~g~w~~~dein~l~~ 154 (383)
....+++||+|||||-+++.||+.|..|+..-.++.-|.... +.+++ ..+ ......+++||||++..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 345678999999999999999999999999889888776543 33443 221 23456789999998743
No 186
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00044 Score=71.19 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=77.3
Q ss_pred HHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCCc--------------------------------EEEEeCCC
Q psy6129 79 ITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAKY--------------------------------VVVFNCSD 123 (383)
Q Consensus 79 ~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~~--------------------------------~~~~~c~~ 123 (383)
..+..+++.+.- .+++||+|+|||++++.+|+.+... +..++...
T Consensus 26 ~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s 105 (620)
T PRK14954 26 HTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAAS 105 (620)
T ss_pred HHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccc
Confidence 345666766543 3478999999999999999988542 11222222
Q ss_pred CCCHHHHHHHHhhh-----hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCee-EEEe
Q psy6129 124 QMDYRGLGRIYKGL-----AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFG-IFIT 197 (383)
Q Consensus 124 ~~~~~~l~~~l~g~-----~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-if~T 197 (383)
....+++..+..-+ ......+++||++++..+....+ +.-+.+- .+.+. ||+|
T Consensus 106 ~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naL-------LK~LEeP--------------p~~tv~IL~t 164 (620)
T PRK14954 106 NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAF-------LKTLEEP--------------PPHAIFIFAT 164 (620)
T ss_pred cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHH-------HHHHhCC--------------CCCeEEEEEe
Confidence 23344454444332 12234667888887776543322 2222110 12233 3444
Q ss_pred eCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 198 MNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 198 ~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
.+ .+.+++.++++...+.+..++...+...+
T Consensus 165 ~~-----~~kLl~TI~SRc~~vef~~l~~~ei~~~L 195 (620)
T PRK14954 165 TE-----LHKIPATIASRCQRFNFKRIPLDEIQSQL 195 (620)
T ss_pred CC-----hhhhhHHHHhhceEEecCCCCHHHHHHHH
Confidence 33 36899999999999999999887766543
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0005 Score=71.57 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=76.9
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhC----------CcEEEEeCCC---CC----CHH-HHHHHHhhhhhc-CceEEec
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLA----------KYVVVFNCSD---QM----DYR-GLGRIYKGLAQS-GSWGCFD 147 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg----------~~~~~~~c~~---~~----~~~-~l~~~l~g~~~~-g~w~~~d 147 (383)
....+.|+|+||+|||.++..||.... ..++...... ++ +++ -+..+++.+-.+ ...+++|
T Consensus 190 ~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFID 269 (786)
T COG0542 190 TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFID 269 (786)
T ss_pred CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEe
Confidence 456688999999999999999998762 2333333222 11 111 133334444333 5677889
Q ss_pred ccccCChhhHHHH-HHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEee-CCCCCCCCcchHHHHHhccccccCCCC
Q psy6129 148 EFNRIELPVLSVA-AQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITM-NPGYAGRKELPENLKIQFRTVAMMVPD 225 (383)
Q Consensus 148 ein~l~~~~ls~l-~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~-np~~~g~~~lp~~l~~~fr~v~~~~Pd 225 (383)
|+..+--.--... +-....++.+...++ ..++++++ -.+|...-+=+.+|-+||.+|.+..|+
T Consensus 270 EiHtiVGAG~~~G~a~DAaNiLKPaLARG---------------eL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs 334 (786)
T COG0542 270 EIHTIVGAGATEGGAMDAANLLKPALARG---------------ELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPS 334 (786)
T ss_pred chhhhcCCCcccccccchhhhhHHHHhcC---------------CeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCC
Confidence 9986522110000 011122333333332 12344433 336654556788999999999999999
Q ss_pred HHHHHHHH
Q psy6129 226 RQIIIRVK 233 (383)
Q Consensus 226 ~~~i~ei~ 233 (383)
.+.-++|+
T Consensus 335 ~e~ti~IL 342 (786)
T COG0542 335 VEDTIAIL 342 (786)
T ss_pred HHHHHHHH
Confidence 99888776
No 188
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.91 E-value=0.00026 Score=70.49 Aligned_cols=129 Identities=18% Similarity=0.201 Sum_probs=82.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhh-----------------hhhcCceEEec
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKG-----------------LAQSGSWGCFD 147 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g-----------------~~~~g~w~~~d 147 (383)
..+.++.|++||||+.+++.+.... +.|++.+||.... .+.+...+-| ....|+.+++|
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN-ESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC-HHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 4556678999999999999887655 3689999999754 4555554432 12346789999
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCcchHHHHHhccccccCCC
Q psy6129 148 EFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKELPENLKIQFRTVAMMVP 224 (383)
Q Consensus 148 ein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~lp~~l~~~fr~v~~~~P 224 (383)
|++.++.+....+.. .+.++ .+.. .|..-....++++++|++..- .....+.+.|-.++..+.+..|
T Consensus 241 ei~~l~~~~q~~l~~-------~l~~~--~~~~-~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~p 310 (441)
T PRK10365 241 EIGDISPMMQVRLLR-------AIQER--EVQR-VGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVP 310 (441)
T ss_pred ccccCCHHHHHHHHH-------HHccC--cEEe-CCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCC
Confidence 999999987665432 23232 2222 222222345788998887531 1223455666666667777777
Q ss_pred CHH
Q psy6129 225 DRQ 227 (383)
Q Consensus 225 d~~ 227 (383)
...
T Consensus 311 pLr 313 (441)
T PRK10365 311 SLR 313 (441)
T ss_pred Chh
Confidence 644
No 189
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.90 E-value=0.00022 Score=69.77 Aligned_cols=110 Identities=17% Similarity=0.242 Sum_probs=75.3
Q ss_pred HHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCH---HH-HHH---HHhhh---------hhc
Q psy6129 80 TLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDY---RG-LGR---IYKGL---------AQS 140 (383)
Q Consensus 80 ~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~---~~-l~~---~l~g~---------~~~ 140 (383)
.+...-.+...+++.|++||||--.++++-+..+ +|++.+||..--.. +. +|. -|.|+ ...
T Consensus 238 ~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAd 317 (550)
T COG3604 238 EIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELAD 317 (550)
T ss_pred HHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecC
Confidence 3333346788899999999999988888777665 68999999864321 11 221 12333 356
Q ss_pred CceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEec-CCcEEEecCCeeEEEeeCC
Q psy6129 141 GSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFT-DGDSIEMCPEFGIFITMNP 200 (383)
Q Consensus 141 g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~-~~~~i~~~~~~~if~T~np 200 (383)
|+.+++|||--+|.+...-+ ++.++++. +... ..+++++ +.++++++|-
T Consensus 318 GGTLFLDEIGelPL~lQaKL-------LRvLQegE--ieRvG~~r~ikV--DVRiIAATNR 367 (550)
T COG3604 318 GGTLFLDEIGELPLALQAKL-------LRVLQEGE--IERVGGDRTIKV--DVRVIAATNR 367 (550)
T ss_pred CCeEechhhccCCHHHHHHH-------HHHHhhcc--eeecCCCceeEE--EEEEEeccch
Confidence 88999999999998876654 56666653 3321 2345554 6899999995
No 190
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.0001 Score=70.07 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=75.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC------------------------CcEEEEeCCCCCCH----HHHHHHHhhhhhc--
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA------------------------KYVVVFNCSDQMDY----RGLGRIYKGLAQS-- 140 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg------------------------~~~~~~~c~~~~~~----~~l~~~l~g~~~~-- 140 (383)
.++.||+|+|||+++..+|+.++ -.++.+|-+..-.. +.+..+..-....
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~ 106 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL 106 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC
Confidence 56789999999999999999998 35677777765552 2344444332222
Q ss_pred ---CceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc
Q psy6129 141 ---GSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR 217 (383)
Q Consensus 141 ---g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr 217 (383)
...+++||++.+..+....+ +..+.+. ..+..|++++|. ...+.+.++++++
T Consensus 107 ~~~~kviiidead~mt~~A~nal-------lk~lEep--------------~~~~~~il~~n~----~~~il~tI~SRc~ 161 (325)
T COG0470 107 EGGYKVVIIDEADKLTEDAANAL-------LKTLEEP--------------PKNTRFILITND----PSKILPTIRSRCQ 161 (325)
T ss_pred CCCceEEEeCcHHHHhHHHHHHH-------HHHhccC--------------CCCeEEEEEcCC----hhhccchhhhcce
Confidence 24567899998777554432 1111111 245778888882 3577779999999
Q ss_pred ccccCCCCHHHH
Q psy6129 218 TVAMMVPDRQII 229 (383)
Q Consensus 218 ~v~~~~Pd~~~i 229 (383)
.+.+..|+....
T Consensus 162 ~i~f~~~~~~~~ 173 (325)
T COG0470 162 RIRFKPPSRLEA 173 (325)
T ss_pred eeecCCchHHHH
Confidence 999977664443
No 191
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.0006 Score=70.45 Aligned_cols=139 Identities=13% Similarity=0.145 Sum_probs=89.8
Q ss_pred HHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhC-------------------------CcEEEEeCCCCCCHHHH
Q psy6129 79 ITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLA-------------------------KYVVVFNCSDQMDYRGL 130 (383)
Q Consensus 79 ~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg-------------------------~~~~~~~c~~~~~~~~l 130 (383)
..+..++..+.-. +++||+|+|||++++.+|+.+. ..++.+++......+++
T Consensus 27 ~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~I 106 (614)
T PRK14971 27 TTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDI 106 (614)
T ss_pred HHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHH
Confidence 4456666665333 4789999999999999999874 23456666655556667
Q ss_pred HHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 131 GRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 131 ~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
..++.-+. ....++++||++++..+....+ +..+.+- .+++.|+++++ .+
T Consensus 107 r~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naL-------LK~LEep--------------p~~tifIL~tt----~~ 161 (614)
T PRK14971 107 RNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAF-------LKTLEEP--------------PSYAIFILATT----EK 161 (614)
T ss_pred HHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHH-------HHHHhCC--------------CCCeEEEEEeC----Cc
Confidence 77664432 2334778999999887654433 2211110 12334444443 24
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHH---hhcCCCch
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKL---ASCGFLEN 242 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~~~gf~~~ 242 (383)
+.+.+.+++++..+.+..++...+.+.+- ...|..-.
T Consensus 162 ~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~ 201 (614)
T PRK14971 162 HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE 201 (614)
T ss_pred hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 68999999999999999988877765543 34566533
No 192
>PF13173 AAA_14: AAA domain
Probab=97.89 E-value=1.7e-05 Score=64.99 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=47.3
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhC--CcEEEEeCCCCCCHHH----HHHHHhhhh-hcCceEEecccccCC
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLA--KYVVVFNCSDQMDYRG----LGRIYKGLA-QSGSWGCFDEFNRIE 153 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg--~~~~~~~c~~~~~~~~----l~~~l~g~~-~~g~w~~~dein~l~ 153 (383)
...++.||.|+|||++++++++.+. ..++.+||........ +.+.+.... ....++++||++.++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhc
Confidence 3456889999999999999998886 7788899887544321 223332222 356889999999876
No 193
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.88 E-value=0.00028 Score=72.81 Aligned_cols=128 Identities=17% Similarity=0.213 Sum_probs=71.0
Q ss_pred CceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCC------c---EEEecCCeeEEEeeCCCCCCCCcchHH
Q psy6129 141 GSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDG------D---SIEMCPEFGIFITMNPGYAGRKELPEN 211 (383)
Q Consensus 141 g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~------~---~i~~~~~~~if~T~np~~~g~~~lp~~ 211 (383)
|..+++||++.++++....+ ++++.++. +....+ . .-.+.-++++++++||.. -.++++.
T Consensus 218 gGtL~Ldei~~L~~~~q~~L-------l~~L~~~~--i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~--l~~l~~~ 286 (608)
T TIGR00764 218 KGVLYIDEIKTMPLEVQQYL-------LTALQDKK--FPITGQSENSSGAMVRTEPVPCDFILVASGNLDD--LEGMHPA 286 (608)
T ss_pred CCEEEEEChHhCCHHHHHHH-------HHHHHhCc--EEecCccccccccccCCCCCccceEEEEECCHHH--HhhcCHH
Confidence 57889999999997766654 34444432 222111 1 112334789999999852 2468999
Q ss_pred HHHhcc------ccccCCCC-HH---HHHHHH---HhhcC-CCc-hHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHH
Q psy6129 212 LKIQFR------TVAMMVPD-RQ---IIIRVK---LASCG-FLE-NITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSV 276 (383)
Q Consensus 212 l~~~fr------~v~~~~Pd-~~---~i~ei~---l~~~g-f~~-~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~v 276 (383)
|+++|+ .+....|+ .+ .+++.. ....| ... .....++++..+.. .-..+.+.....|.+.++
T Consensus 287 l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R---~ag~r~~lsl~~R~L~~l 363 (608)
T TIGR00764 287 LRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR---RAGRKDHLTLRLRELGGL 363 (608)
T ss_pred HHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH---HHhcccccCCCHHHHHHH
Confidence 999998 22333444 22 122221 11222 211 12223334333322 223456667778999999
Q ss_pred HHhcch
Q psy6129 277 LRSLGA 282 (383)
Q Consensus 277 i~~~~~ 282 (383)
++.|..
T Consensus 364 lR~A~~ 369 (608)
T TIGR00764 364 VRAAGD 369 (608)
T ss_pred HHHHHH
Confidence 998754
No 194
>KOG0480|consensus
Probab=97.88 E-value=2.2e-05 Score=78.36 Aligned_cols=166 Identities=17% Similarity=0.261 Sum_probs=99.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHH----------H--Hhhh--hhcCceEEecccccCChhh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGR----------I--YKGL--AQSGSWGCFDEFNRIELPV 156 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~----------~--l~g~--~~~g~w~~~dein~l~~~~ 156 (383)
++++|.|||||+..+++.+..+.|-+|+ |...++.+-|.- + =.|| ...++.+|+||||++...-
T Consensus 381 v~iVGDPgt~KSQfLk~v~~fsPR~vYt--sGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~d 458 (764)
T KOG0480|consen 381 VCIVGDPGTGKSQFLKAVCAFSPRSVYT--SGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKD 458 (764)
T ss_pred EEEeCCCCccHHHHHHHHhccCCcceEe--cCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHh
Confidence 4579999999999999999999888654 444444443321 1 1354 4567899999999988732
Q ss_pred HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC---CCCCC------cchHHHHHhccccc--cCCCC
Q psy6129 157 LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG---YAGRK------ELPENLKIQFRTVA--MMVPD 225 (383)
Q Consensus 157 ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~---~~g~~------~lp~~l~~~fr~v~--~~~Pd 225 (383)
.-+ |..|+....-. +-..|-.-.++....|+++.||- |.-.+ ++...+.+||--+. ++.||
T Consensus 459 qvA-------ihEAMEQQtIS-IaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~n 530 (764)
T KOG0480|consen 459 QVA-------IHEAMEQQTIS-IAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCN 530 (764)
T ss_pred HHH-------HHHHHHhheeh-heecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCc
Confidence 222 23343322111 11345556677888999999992 32222 34555678886544 45666
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhcc
Q psy6129 226 RQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLG 281 (383)
Q Consensus 226 ~~~i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~~ 281 (383)
... ...+|..|+.....+.+....+ .-|+++.+++.|+.|.
T Consensus 531 E~~-------------D~~ia~hIld~h~~i~~~~~~~--~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 531 EVV-------------DYAIARHILDLHRGIDDATERV--CVYTLEQVRKYIRYAR 571 (764)
T ss_pred hHH-------------HHHHHHHHHHHhcccccccccc--ccccHHHHHHHHHHHH
Confidence 543 1335666666544433332222 3456777777777654
No 195
>KOG0745|consensus
Probab=97.87 E-value=1.8e-05 Score=75.72 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=51.5
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHH--------HHHHHhh------hhhcCceEEecccccCC
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRG--------LGRIYKG------LAQSGSWGCFDEFNRIE 153 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~--------l~~~l~g------~~~~g~w~~~dein~l~ 153 (383)
...+++.||+|+|||-+++.||+.+..|+.+..|+.-|..-. +.+++.- .++ ..++++||+|++.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQ-qGIVflDEvDKi~ 304 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQ-QGIVFLDEVDKIT 304 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHh-cCeEEEehhhhhc
Confidence 445778999999999999999999999999999999875443 3344432 234 4577899999886
Q ss_pred h
Q psy6129 154 L 154 (383)
Q Consensus 154 ~ 154 (383)
.
T Consensus 305 ~ 305 (564)
T KOG0745|consen 305 K 305 (564)
T ss_pred c
Confidence 3
No 196
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.0002 Score=68.27 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCC---CC
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCS---DQ 124 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~---~~ 124 (383)
|-....+..+...=+....-++.||+|+||+++++.+|+.+-.. ++.+.-. ..
T Consensus 6 PWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~ 85 (328)
T PRK05707 6 PWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKT 85 (328)
T ss_pred CCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCC
Confidence 55555555555431122234578999999999999999987421 2222211 23
Q ss_pred CCHHHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeC
Q psy6129 125 MDYRGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMN 199 (383)
Q Consensus 125 ~~~~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~n 199 (383)
...+++..+..-+. ....++++|+.+++..+.-..+ +..+.+- .+++.|+++++
T Consensus 86 i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaL-------LK~LEEP--------------p~~~~fiL~t~ 144 (328)
T PRK05707 86 IKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANAL-------LKSLEEP--------------SGDTVLLLISH 144 (328)
T ss_pred CCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHH-------HHHHhCC--------------CCCeEEEEEEC
Confidence 44555655543332 2234567899998888765443 2222111 13344555554
Q ss_pred CCCCCCCcchHHHHHhccccccCCCCHHHHHHHHH
Q psy6129 200 PGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 200 p~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l 234 (383)
. ...|++.++||++.+.+..|+.+.+.+.+-
T Consensus 145 ~----~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~ 175 (328)
T PRK05707 145 Q----PSRLLPTIKSRCQQQACPLPSNEESLQWLQ 175 (328)
T ss_pred C----hhhCcHHHHhhceeeeCCCcCHHHHHHHHH
Confidence 2 247999999999999999999888876654
No 197
>KOG2028|consensus
Probab=97.84 E-value=0.00014 Score=68.39 Aligned_cols=126 Identities=20% Similarity=0.223 Sum_probs=77.9
Q ss_pred HHHHHHccCCCC--CcCCCCCCccHHHHHHHHHhCCcE-EEEeCCC-CCCHHHHHHHHhhh------hhcCceEEecccc
Q psy6129 81 LAQALTMSMGGS--PCGPAGTGKTETVKDMGKTLAKYV-VVFNCSD-QMDYRGLGRIYKGL------AQSGSWGCFDEFN 150 (383)
Q Consensus 81 l~~al~~~~~~~--l~Gp~GtGKT~~i~~la~~lg~~~-~~~~c~~-~~~~~~l~~~l~g~------~~~g~w~~~dein 150 (383)
+..++.++..+. |-||||||||++++-++.....+- ..+.-|. ....+++..+++.+ -.....+++||+.
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiH 232 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIH 232 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhh
Confidence 344566665543 569999999999999999887763 3333333 33456688887653 3445688899988
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEE--eeCCCCCCCCcchHHHHHhccccccCCCCHHH
Q psy6129 151 RIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFI--TMNPGYAGRKELPENLKIQFRTVAMMVPDRQI 228 (383)
Q Consensus 151 ~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~--T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~ 228 (383)
|....-...+ .-..++|. |. ++. |-||.+ +|...|.+++|.+.+..-....
T Consensus 233 RFNksQQD~f----------------LP~VE~G~-I~------lIGATTENPSF----qln~aLlSRC~VfvLekL~~n~ 285 (554)
T KOG2028|consen 233 RFNKSQQDTF----------------LPHVENGD-IT------LIGATTENPSF----QLNAALLSRCRVFVLEKLPVNA 285 (554)
T ss_pred hhhhhhhhcc----------------cceeccCc-eE------EEecccCCCcc----chhHHHHhccceeEeccCCHHH
Confidence 6544321111 00112332 21 222 447765 7888999999999887766555
Q ss_pred HHHHH
Q psy6129 229 IIRVK 233 (383)
Q Consensus 229 i~ei~ 233 (383)
+..++
T Consensus 286 v~~iL 290 (554)
T KOG2028|consen 286 VVTIL 290 (554)
T ss_pred HHHHH
Confidence 54443
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.82 E-value=1.1e-05 Score=65.92 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=49.2
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh--------CCcEEEEeCCCCCCHHHHHHHHh----------------------hh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL--------AKYVVVFNCSDQMDYRGLGRIYK----------------------GL 137 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l--------g~~~~~~~c~~~~~~~~l~~~l~----------------------g~ 137 (383)
.....+.||+|+|||++++.+++.+ ..+++.++|....+...+.+-+. -+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3445688999999999999999988 67788999998887766533221 12
Q ss_pred hhcCc-eEEecccccC-ChhhHHH
Q psy6129 138 AQSGS-WGCFDEFNRI-ELPVLSV 159 (383)
Q Consensus 138 ~~~g~-w~~~dein~l-~~~~ls~ 159 (383)
...+. .+++||++.+ +.+.+..
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~ 107 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEF 107 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHH
T ss_pred HhcCCeEEEEeChHhcCCHHHHHH
Confidence 23344 7889999987 5444443
No 199
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=6.7e-05 Score=75.82 Aligned_cols=138 Identities=17% Similarity=0.147 Sum_probs=81.8
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChhhHH
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELPVLS 158 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls 158 (383)
..-+|++|+||||||||.++|+.|...+.|++.+..|+-.. .+.+...+..+. +..+.+++||++-....--.
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~ 260 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGA 260 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCC
Confidence 34577889999999999999999999999999988876443 333445555553 45678999999854332100
Q ss_pred H---HHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHH---HhccccccCCCCH---HHH
Q psy6129 159 V---AAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLK---IQFRTVAMMVPDR---QII 229 (383)
Q Consensus 159 ~---l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~---~~fr~v~~~~Pd~---~~i 229 (383)
. .......-++++.-....+. . +...-+++++|-. .-|+++|. +..|.|.+..||. +.|
T Consensus 261 g~GggnderEQTLNQlLvEmDGF~--~------~~gviviaaTNRp----dVlD~ALlRpgRFDRqI~V~~PDi~gRe~I 328 (596)
T COG0465 261 GLGGGNDEREQTLNQLLVEMDGFG--G------NEGVIVIAATNRP----DVLDPALLRPGRFDRQILVELPDIKGREQI 328 (596)
T ss_pred CCCCCchHHHHHHHHHHhhhccCC--C------CCceEEEecCCCc----ccchHhhcCCCCcceeeecCCcchhhHHHH
Confidence 0 00000011112111111111 1 2334456666632 13555554 4568899999994 466
Q ss_pred HHHHHh
Q psy6129 230 IRVKLA 235 (383)
Q Consensus 230 ~ei~l~ 235 (383)
.++++.
T Consensus 329 lkvH~~ 334 (596)
T COG0465 329 LKVHAK 334 (596)
T ss_pred HHHHhh
Confidence 666554
No 200
>KOG0991|consensus
Probab=97.75 E-value=5.8e-05 Score=66.77 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=79.6
Q ss_pred ccCCCC-CcCCCCCCccHHHHHHHHHh-CCc----EEEEeCCCCCCHHHHHHHHhhhhhc--------CceEEecccccC
Q psy6129 87 MSMGGS-PCGPAGTGKTETVKDMGKTL-AKY----VVVFNCSDQMDYRGLGRIYKGLAQS--------GSWGCFDEFNRI 152 (383)
Q Consensus 87 ~~~~~~-l~Gp~GtGKT~~i~~la~~l-g~~----~~~~~c~~~~~~~~l~~~l~g~~~~--------g~w~~~dein~l 152 (383)
.+.|.+ +.||||||||+.+..||+.| |.. +..+|.|+.-..+.+.+-++--++. -..+.+||.|.+
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 344544 57999999999999999865 633 5678999988888887777664433 246789998854
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHH
Q psy6129 153 ELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRV 232 (383)
Q Consensus 153 ~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei 232 (383)
.... || |++...+.+ ...++|..++|. ..++-+-+.+++..+.+..-+...+..-
T Consensus 126 T~gA-----QQ------AlRRtMEiy----------S~ttRFalaCN~----s~KIiEPIQSRCAiLRysklsd~qiL~R 180 (333)
T KOG0991|consen 126 TAGA-----QQ------ALRRTMEIY----------SNTTRFALACNQ----SEKIIEPIQSRCAILRYSKLSDQQILKR 180 (333)
T ss_pred hhHH-----HH------HHHHHHHHH----------cccchhhhhhcc----hhhhhhhHHhhhHhhhhcccCHHHHHHH
Confidence 4333 22 222211111 134677788885 3577777888888777766665555443
Q ss_pred H
Q psy6129 233 K 233 (383)
Q Consensus 233 ~ 233 (383)
+
T Consensus 181 l 181 (333)
T KOG0991|consen 181 L 181 (333)
T ss_pred H
Confidence 3
No 201
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.0012 Score=63.55 Aligned_cols=136 Identities=13% Similarity=0.104 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCC-------cEEE-EeCCC--------------------
Q psy6129 75 DRCYITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAK-------YVVV-FNCSD-------------------- 123 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~-------~~~~-~~c~~-------------------- 123 (383)
+.+...+..++..+.. .+++||+|+|||++++.+|+.+-. +... ..|..
T Consensus 29 ~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~ 108 (351)
T PRK09112 29 EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITR 108 (351)
T ss_pred HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeec
Confidence 4455677777877764 457899999999999999998743 1110 11110
Q ss_pred -----------CCCHHHHHHHH---hhhhhcCc--eEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEE
Q psy6129 124 -----------QMDYRGLGRIY---KGLAQSGS--WGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIE 187 (383)
Q Consensus 124 -----------~~~~~~l~~~l---~g~~~~g~--w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~ 187 (383)
....+.+.++. .-....|. ++++||++.++.+....+ +..+.+-.
T Consensus 109 ~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaL-------Lk~LEEpp------------ 169 (351)
T PRK09112 109 PFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAI-------LKTLEEPP------------ 169 (351)
T ss_pred ccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHH-------HHHHhcCC------------
Confidence 11122222221 11123343 456899998887765543 22221110
Q ss_pred ecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHHh
Q psy6129 188 MCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLA 235 (383)
Q Consensus 188 ~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~ 235 (383)
.....+++|.+| ..+++.++++++.+.+..|+.+.+.+.+-.
T Consensus 170 -~~~~fiLit~~~-----~~llptIrSRc~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 170 -ARALFILISHSS-----GRLLPTIRSRCQPISLKPLDDDELKKALSH 211 (351)
T ss_pred -CCceEEEEECCh-----hhccHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 011334455554 366788999999999999999888776543
No 202
>KOG0742|consensus
Probab=97.71 E-value=0.00053 Score=65.44 Aligned_cols=149 Identities=16% Similarity=0.194 Sum_probs=94.2
Q ss_pred cceeechhhHHHHHHHHHHHHc-------cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC--CHHH---HHHH
Q psy6129 66 ERLVITPLTDRCYITLAQALTM-------SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM--DYRG---LGRI 133 (383)
Q Consensus 66 ~~lv~Tp~t~r~~~~l~~al~~-------~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~--~~~~---l~~~ 133 (383)
...|.-|..++-..-|..+-.+ ....+++||||||||..++.||+..|..+..+...+.- ..+. +.++
T Consensus 355 ~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~l 434 (630)
T KOG0742|consen 355 EGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKL 434 (630)
T ss_pred CCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHH
Confidence 4577777766666666554422 23456899999999999999999999998888776533 2232 3444
Q ss_pred Hhh--hhhcCceEEecccccC-ChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchH
Q psy6129 134 YKG--LAQSGSWGCFDEFNRI-ELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPE 210 (383)
Q Consensus 134 l~g--~~~~g~w~~~dein~l-~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~ 210 (383)
+.= -...|-.+++||.|-. ....-.++++..++-++++.=+ .|.. ..++.++++.|-. .+++.
T Consensus 435 FDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR-------TGdq---SrdivLvlAtNrp----gdlDs 500 (630)
T KOG0742|consen 435 FDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-------TGDQ---SRDIVLVLATNRP----GDLDS 500 (630)
T ss_pred HHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH-------hccc---ccceEEEeccCCc----cchhH
Confidence 532 3466888899998732 1111223444444444444322 2221 2457777888842 46788
Q ss_pred HHHHhcc-ccccCCCCHHH
Q psy6129 211 NLKIQFR-TVAMMVPDRQI 228 (383)
Q Consensus 211 ~l~~~fr-~v~~~~Pd~~~ 228 (383)
++-+++- .|-++.|..+.
T Consensus 501 AV~DRide~veFpLPGeEE 519 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEE 519 (630)
T ss_pred HHHhhhhheeecCCCChHH
Confidence 8888885 45788888654
No 203
>KOG0735|consensus
Probab=97.71 E-value=3.1e-05 Score=78.24 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=54.7
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhh-hhcCceEEecccccCCh
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGL-AQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~-~~~g~w~~~dein~l~~ 154 (383)
+....|++|+||||||||-++.++|...+..++.+...+-+ +.+.+..++.-+ +...+.++||||+.+.+
T Consensus 698 lr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAP 774 (952)
T KOG0735|consen 698 LRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAP 774 (952)
T ss_pred cccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCc
Confidence 45667889999999999999999999999999888765532 334455566544 45678999999998755
No 204
>KOG0728|consensus
Probab=97.71 E-value=6.8e-05 Score=66.97 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=79.1
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHH-----------hhh-hhcCceEEecccccC
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIY-----------KGL-AQSGSWGCFDEFNRI 152 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l-----------~g~-~~~g~w~~~dein~l 152 (383)
+.+-+|++|+||||||||-+++++|......++.+..++- +++++ .=+ -...+.++.|||+.+
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel-----vqk~igegsrmvrelfvmarehapsiifmdeidsi 252 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL-----VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 252 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH-----HHHHhhhhHHHHHHHHHHHHhcCCceEeeeccccc
Confidence 4567888999999999999999999999888888876543 22222 111 245678899999976
Q ss_pred ChhhH-------HHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH---hccccccC
Q psy6129 153 ELPVL-------SVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI---QFRTVAMM 222 (383)
Q Consensus 153 ~~~~l-------s~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~---~fr~v~~~ 222 (383)
...-. |-+.....++++++ +| .....++.++++.|.= .-|+++|.+ .=|.+.+.
T Consensus 253 gs~r~e~~~ggdsevqrtmlellnql----------dg--featknikvimatnri----dild~allrpgridrkiefp 316 (404)
T KOG0728|consen 253 GSSRVESGSGGDSEVQRTMLELLNQL----------DG--FEATKNIKVIMATNRI----DILDPALLRPGRIDRKIEFP 316 (404)
T ss_pred ccccccCCCCccHHHHHHHHHHHHhc----------cc--cccccceEEEEecccc----ccccHhhcCCCcccccccCC
Confidence 43211 11111111222221 22 1234677788888841 245555543 23568888
Q ss_pred CCCHHHHHHHH
Q psy6129 223 VPDRQIIIRVK 233 (383)
Q Consensus 223 ~Pd~~~i~ei~ 233 (383)
.|+.+.=++|+
T Consensus 317 ~p~e~ar~~il 327 (404)
T KOG0728|consen 317 PPNEEARLDIL 327 (404)
T ss_pred CCCHHHHHHHH
Confidence 89987665554
No 205
>KOG2035|consensus
Probab=97.68 E-value=0.0067 Score=55.33 Aligned_cols=134 Identities=14% Similarity=0.220 Sum_probs=89.0
Q ss_pred CcCCCCCCccHHHHHHHHHh-CC--c------------------EEEEe--CCCCCCHHHHH--------HHHhhhhhc-
Q psy6129 93 PCGPAGTGKTETVKDMGKTL-AK--Y------------------VVVFN--CSDQMDYRGLG--------RIYKGLAQS- 140 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~l-g~--~------------------~~~~~--c~~~~~~~~l~--------~~l~g~~~~- 140 (383)
++||+|+||.+.+..+-+.+ |. + +-++. -+-..++++.| .+++-.+|+
T Consensus 39 ~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~ 118 (351)
T KOG2035|consen 39 VYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQ 118 (351)
T ss_pred EECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhc
Confidence 47999999999998876644 51 1 11111 11123455543 345544332
Q ss_pred --------C-ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHH
Q psy6129 141 --------G-SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPEN 211 (383)
Q Consensus 141 --------g-~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~ 211 (383)
+ ..+++.|.|.+..+...++ +...+.| ..++++++.+|. .+.+-+.
T Consensus 119 qie~~~qr~fKvvvi~ead~LT~dAQ~aL-----------RRTMEkY----------s~~~RlIl~cns----~SriIep 173 (351)
T KOG2035|consen 119 QIETQGQRPFKVVVINEADELTRDAQHAL-----------RRTMEKY----------SSNCRLILVCNS----TSRIIEP 173 (351)
T ss_pred chhhccccceEEEEEechHhhhHHHHHHH-----------HHHHHHH----------hcCceEEEEecC----cccchhH
Confidence 2 2567888887777764433 2211111 146889999995 5688899
Q ss_pred HHHhccccccCCCCHHHHHHHH---HhhcCCCchHHHHHHHHH
Q psy6129 212 LKIQFRTVAMMVPDRQIIIRVK---LASCGFLENITLARKFYT 251 (383)
Q Consensus 212 l~~~fr~v~~~~Pd~~~i~ei~---l~~~gf~~~~~la~ki~~ 251 (383)
+++++-.|.+..|+.+.|..++ +...|+.-++.++.+++.
T Consensus 174 IrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 174 IRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAE 216 (351)
T ss_pred HhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 9999999999999998887776 567899988888877764
No 206
>KOG1969|consensus
Probab=97.68 E-value=0.00011 Score=74.62 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=57.2
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhh---------hcCceEEecccccCChhhHHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLA---------QSGSWGCFDEFNRIELPVLSVA 160 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~---------~~g~w~~~dein~l~~~~ls~l 160 (383)
+|+||||-|||+++.-+|+..|.-++-+|.|+.-+...+..-+.++. +....+++||||-.+.....++
T Consensus 330 LL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvi 407 (877)
T KOG1969|consen 330 LLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVI 407 (877)
T ss_pred EeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHH
Confidence 57999999999999999999999999999999999998877666653 4456778999998775444433
No 207
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.68 E-value=0.0039 Score=62.65 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=60.1
Q ss_pred HHHHHHh-CCcEEEEeCCCCC------------CHHHHHHHHhhhhh-cCceEEecccccCChhhHHHHHHHHHHHHHHH
Q psy6129 106 KDMGKTL-AKYVVVFNCSDQM------------DYRGLGRIYKGLAQ-SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAK 171 (383)
Q Consensus 106 ~~la~~l-g~~~~~~~c~~~~------------~~~~l~~~l~g~~~-~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~ 171 (383)
+.++..+ +++++.++|.+++ ++.+..+.+..... ..+.+++.||+..-.+. .+...+..+....
T Consensus 33 ~~~~~~~~~~~~~~W~~~~G~~~~~~~~~~~~~~p~~al~~i~~~~~~~~~~~vl~d~h~~~~~~--~~~r~l~~l~~~~ 110 (489)
T CHL00195 33 RKSIKLNLNRSIYSWDFVDGYTNNPNDNGFAKRNPLQALEFIEKLTPETPALFLLKDFNRFLNDI--SISRKLRNLSRIL 110 (489)
T ss_pred HHHHHhcCCCceEEEeccCCCccCCCccCcccccHHHHHHHHHhcCCCCCcEEEEecchhhhcch--HHHHHHHHHHHHH
Confidence 3444433 4668888888876 33333344444333 24588888888662221 1233333332222
Q ss_pred HhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 172 KEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 172 ~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
... +..-++++. .-.+|+.|.+.+..+.+..|+.+.|.+++
T Consensus 111 ~~~---------------~~~~i~~~~------~~~~p~el~~~~~~~~~~lP~~~ei~~~l 151 (489)
T CHL00195 111 KTQ---------------PKTIIIIAS------ELNIPKELKDLITVLEFPLPTESEIKKEL 151 (489)
T ss_pred HhC---------------CCEEEEEcC------CCCCCHHHHhceeEEeecCcCHHHHHHHH
Confidence 221 222233332 25899999999999999999998886654
No 208
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00094 Score=63.92 Aligned_cols=139 Identities=11% Similarity=0.068 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCC-CCCCH
Q psy6129 76 RCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCS-DQMDY 127 (383)
Q Consensus 76 r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~-~~~~~ 127 (383)
..+..+..++..+..+ +++||+|+||+++++.+|+.+-.+ +..+... .....
T Consensus 13 ~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~i 92 (329)
T PRK08058 13 VVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKK 92 (329)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCH
Confidence 4445566667655433 478999999999999999986311 2222111 12334
Q ss_pred HHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC
Q psy6129 128 RGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY 202 (383)
Q Consensus 128 ~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~ 202 (383)
+++..+..-+. ....++++||++++..+....+ +..+.+ .++++.++++++
T Consensus 93 d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaL-------LK~LEE--------------Pp~~~~~Il~t~--- 148 (329)
T PRK08058 93 DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSL-------LKFLEE--------------PSGGTTAILLTE--- 148 (329)
T ss_pred HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHH-------HHHhcC--------------CCCCceEEEEeC---
Confidence 44544443322 1234778899988877765443 211111 113444554544
Q ss_pred CCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCC
Q psy6129 203 AGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFL 240 (383)
Q Consensus 203 ~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~ 240 (383)
....+++.+++|++.+.+..|+.+.+.+.+. ..|..
T Consensus 149 -~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~-~~gi~ 184 (329)
T PRK08058 149 -NKHQILPTILSRCQVVEFRPLPPESLIQRLQ-EEGIS 184 (329)
T ss_pred -ChHhCcHHHHhhceeeeCCCCCHHHHHHHHH-HcCCC
Confidence 2368999999999999999999988866653 45654
No 209
>KOG1051|consensus
Probab=97.64 E-value=0.00015 Score=76.27 Aligned_cols=99 Identities=20% Similarity=0.317 Sum_probs=68.7
Q ss_pred CcCCCCCCccHHHHHHHHHh-C--CcEEEEeCCCCCC--------H-----HHHHHHHhhhhhc-CceEEecccccCChh
Q psy6129 93 PCGPAGTGKTETVKDMGKTL-A--KYVVVFNCSDQMD--------Y-----RGLGRIYKGLAQS-GSWGCFDEFNRIELP 155 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~l-g--~~~~~~~c~~~~~--------~-----~~l~~~l~g~~~~-g~w~~~dein~l~~~ 155 (383)
+.||+|+|||+++++||..+ | ..++.+++++-+. + ...+++-..+... -+.++||||+++.++
T Consensus 596 flGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~ 675 (898)
T KOG1051|consen 596 FLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPD 675 (898)
T ss_pred EECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHH
Confidence 68999999999999999866 5 3478999997333 1 1112222223333 357789999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 156 VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 156 ~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
++..+.|.+ +++ .+....|++|.. .|+-|++|.|-+
T Consensus 676 v~n~llq~l--------D~G-rltDs~Gr~Vd~-kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 676 VLNILLQLL--------DRG-RLTDSHGREVDF-KNAIFIMTSNVG 711 (898)
T ss_pred HHHHHHHHH--------hcC-ccccCCCcEeec-cceEEEEecccc
Confidence 988765444 332 333346888886 688999999863
No 210
>KOG0726|consensus
Probab=97.63 E-value=4.9e-05 Score=69.32 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=73.3
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhh-hhcCceEEecccccCChh--
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGL-AQSGSWGCFDEFNRIELP-- 155 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~-~~~g~w~~~dein~l~~~-- 155 (383)
++.-+|++|+|+||||||-+++++|+...-.+..+-.|+-. .+.-+.++|.-+ -...+.+++|||+-+-..
T Consensus 216 ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRy 295 (440)
T KOG0726|consen 216 IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY 295 (440)
T ss_pred CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccc
Confidence 45567889999999999999999998665444444333211 111122333322 356789999999955321
Q ss_pred -hHHHHHHHHH-HHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH---hccccccCCCCHHHH
Q psy6129 156 -VLSVAAQQVA-VVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI---QFRTVAMMVPDRQII 229 (383)
Q Consensus 156 -~ls~l~~~~~-~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~---~fr~v~~~~Pd~~~i 229 (383)
.-|..-+.++ .++..+ .....|.- .-+..++++.|. -..|+++|.+ .=|.+-+..||.+.=
T Consensus 296 ds~SggerEiQrtmLELL-NQldGFds--------rgDvKvimATnr----ie~LDPaLiRPGrIDrKIef~~pDe~Tk 361 (440)
T KOG0726|consen 296 DSNSGGEREIQRTMLELL-NQLDGFDS--------RGDVKVIMATNR----IETLDPALIRPGRIDRKIEFPLPDEKTK 361 (440)
T ss_pred cCCCccHHHHHHHHHHHH-HhccCccc--------cCCeEEEEeccc----ccccCHhhcCCCccccccccCCCchhhh
Confidence 1111111111 111111 11112221 234667778774 2456776643 235688899998764
No 211
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0013 Score=66.62 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=47.1
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHH------HHHHHhhh-hhcCceEEecccccCChhhHH
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRG------LGRIYKGL-AQSGSWGCFDEFNRIELPVLS 158 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~------l~~~l~g~-~~~g~w~~~dein~l~~~~ls 158 (383)
..-.++.+.||+|+|||..++.+|.. +.....++..+..+... +...+.-+ ....+++.+||++.+.+...+
T Consensus 16 ~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~ 94 (494)
T COG0464 16 EPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSS 94 (494)
T ss_pred CCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCccc
Confidence 45567788999999999999999998 55445556555443221 11222222 233478899999977665544
No 212
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00049 Score=68.77 Aligned_cols=128 Identities=20% Similarity=0.206 Sum_probs=75.0
Q ss_pred HHHHHHHHcc---CCCCCcCCCCCCccHHHHHHHHHhCCc--EEEEeCCCC----------------------CCHHHHH
Q psy6129 79 ITLAQALTMS---MGGSPCGPAGTGKTETVKDMGKTLAKY--VVVFNCSDQ----------------------MDYRGLG 131 (383)
Q Consensus 79 ~~l~~al~~~---~~~~l~Gp~GtGKT~~i~~la~~lg~~--~~~~~c~~~----------------------~~~~~l~ 131 (383)
.+|..|+..+ .+-++.||-|||||++++-+|+.+... ...=.|..= +..+++.
T Consensus 26 ~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR 105 (515)
T COG2812 26 KTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIR 105 (515)
T ss_pred HHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHH
Confidence 4455566544 344689999999999999999998532 111111110 0111222
Q ss_pred HHHhhh----h-hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecC-C-eeEEEeeCCCCCC
Q psy6129 132 RIYKGL----A-QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCP-E-FGIFITMNPGYAG 204 (383)
Q Consensus 132 ~~l~g~----~-~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~-~-~~if~T~np~~~g 204 (383)
++...+ . ..-...++||+.+++...-..+ +..+.+ +| + .-||+|.+|
T Consensus 106 ~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNAL-------LKTLEE---------------PP~hV~FIlATTe~---- 159 (515)
T COG2812 106 EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNAL-------LKTLEE---------------PPSHVKFILATTEP---- 159 (515)
T ss_pred HHHHHhccCCccccceEEEEecHHhhhHHHHHHH-------hccccc---------------CccCeEEEEecCCc----
Confidence 222221 1 1123556788887666654432 111100 12 1 246788876
Q ss_pred CCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 205 RKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 205 ~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
+++|..+++|+..+.+..-+.+.|.+-+
T Consensus 160 -~Kip~TIlSRcq~f~fkri~~~~I~~~L 187 (515)
T COG2812 160 -QKIPNTILSRCQRFDFKRLDLEEIAKHL 187 (515)
T ss_pred -CcCchhhhhccccccccCCCHHHHHHHH
Confidence 6999999999999999888888776543
No 213
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0023 Score=60.66 Aligned_cols=142 Identities=12% Similarity=0.093 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc-----------------------EEEEeCC---
Q psy6129 72 PLTDRCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY-----------------------VVVFNCS--- 122 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~-----------------------~~~~~c~--- 122 (383)
|--...+..+..++..+..+ ++.||.|+||+++++.+|+.+-.. ++.+.-.
T Consensus 6 PWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (319)
T PRK06090 6 PWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEG 85 (319)
T ss_pred ccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCC
Confidence 56677778888888766543 478999999999999999977211 1122111
Q ss_pred CCCCHHHHHHHHhhh----hhcC-ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEE-
Q psy6129 123 DQMDYRGLGRIYKGL----AQSG-SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFI- 196 (383)
Q Consensus 123 ~~~~~~~l~~~l~g~----~~~g-~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~- 196 (383)
.....+.+..+..-+ ..+| .++++|+.+++..+.-..+ +..+.+ -.++..||.
T Consensus 86 ~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaL-------LKtLEE--------------Pp~~t~fiL~ 144 (319)
T PRK06090 86 KSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNAL-------LKTLEE--------------PAPNCLFLLV 144 (319)
T ss_pred CcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHH-------HHHhcC--------------CCCCeEEEEE
Confidence 123333333332211 1112 3556677776665543332 211111 013344444
Q ss_pred eeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCC
Q psy6129 197 TMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFL 240 (383)
Q Consensus 197 T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~ 240 (383)
|.|| ..|++.++||++.+.+..|+.+.+.+.+ ...|..
T Consensus 145 t~~~-----~~lLpTI~SRCq~~~~~~~~~~~~~~~L-~~~~~~ 182 (319)
T PRK06090 145 THNQ-----KRLLPTIVSRCQQWVVTPPSTAQAMQWL-KGQGIT 182 (319)
T ss_pred ECCh-----hhChHHHHhcceeEeCCCCCHHHHHHHH-HHcCCc
Confidence 4444 5888899999999999999998887765 345554
No 214
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.54 E-value=0.0008 Score=71.21 Aligned_cols=216 Identities=15% Similarity=0.172 Sum_probs=117.5
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHH
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQ 163 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~ 163 (383)
...|.+++-++|+--+..+..+|+..+ +.+..+.....-+. ...+.++.+++.|.|+++.+++..+ .-+..+-..
T Consensus 115 ~~~Pil~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~islG~~~~~-~a~~~l~~a~~~G~Wv~L~N~HL~~-~wl~~Le~~ 192 (707)
T PF03028_consen 115 PTTPILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISLGSGQGP-EAEKALKEAAKEGHWVLLQNCHLAP-SWLPQLEKK 192 (707)
T ss_dssp TTC-EEEEE-TT--THHHHHHHHHCTT-----EEEEETTSHHHH-HHHHHHHHHHHHTSEEEEETGGGGC-CCHHCHHHH
T ss_pred CCCceEEEeCCCCChHHHHHHHHHHHhhhhhheeecCCCCchHH-HHHHHHHHHhcCCeEEEcccchhHH-HHHHHHHHH
Confidence 345566677889999999999999999 88889988766544 5678888999999999999999765 333333222
Q ss_pred HHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCC-HHHHHHHHHhh--cCCC
Q psy6129 164 VAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPD-RQIIIRVKLAS--CGFL 240 (383)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd-~~~i~ei~l~~--~gf~ 240 (383)
+. .-. . +.|++|++|+|+.|. ..+|.++......|....|. .+..+.-.+.. ..+.
T Consensus 193 l~-------~~~-------~---~~h~~FRL~lt~~~~----~~~P~~lL~~s~kv~~E~p~gik~~l~~~~~~~~~~~~ 251 (707)
T PF03028_consen 193 LE-------SLS-------P---EIHPNFRLFLTSEPS----PSFPISLLQSSIKVTYEPPPGIKANLLRTYNSISQDFF 251 (707)
T ss_dssp HH-------C-S-------S---TTSTT-EEEEEEESS----TTS-HHHHHCSEEEEE---SSHHHHHHHHHCC--SCCH
T ss_pred Hh-------ccc-------c---ccccceEEEEEecCc----ccCCHHHHHcccceeeCChhHHHHHHHHHHHhhhhhhh
Confidence 21 111 0 468999999999874 46999999999988887766 55444333322 1111
Q ss_pred -c---h---HHHHHHHHHHHHHHHH--hccC---CCCCccChhhhHHHHHhcchhhccC-CCChHHHHHHHHHHH-hhcC
Q psy6129 241 -E---N---ITLARKFYTLYKLCEE--QLTK---QVHYDFGLRNILSVLRSLGAAKRVN-SRDTESTIVMRVLRD-MNLS 306 (383)
Q Consensus 241 -~---~---~~la~ki~~~~~~~~~--~ls~---~~hy~f~lR~l~~vi~~~~~~~~~~-~~~~e~~~~~~a~~~-~~~~ 306 (383)
. + +.+.=.+.-|...+.+ .+.+ ...|+|+-.+++..+.......... +....-..+...+-+ ++-.
T Consensus 252 ~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l~~~~~~~~~~~ipw~~l~~l~~~i~YGG 331 (707)
T PF03028_consen 252 EMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDILDNWLDESSPESIPWDALRYLIGEIVYGG 331 (707)
T ss_dssp HHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHHHHHHHHCSCCCTTHHHHHHHHHHTTTTT
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHHHHHHhhccccCCcHHHHHHHhhhceecC
Confidence 0 1 1122122223333333 3333 4579999777765554433222221 111111112222223 3455
Q ss_pred CCCCC-ChHHHHHHHHhhCC
Q psy6129 307 KLIDE-DEPLFISLVADLFP 325 (383)
Q Consensus 307 ~l~~~-d~~~f~~li~~~Fp 325 (383)
++.++ |..++..++..+|.
T Consensus 332 rv~d~~D~r~l~~~~~~~f~ 351 (707)
T PF03028_consen 332 RVDDEWDRRLLNTLLNQFFN 351 (707)
T ss_dssp T-SSHHHHHHHHHHHHHHSS
T ss_pred eeccHHHHHHHHHHHHHHcC
Confidence 66554 77888888887774
No 215
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0023 Score=60.77 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=86.8
Q ss_pred chhhHHHHHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeC--
Q psy6129 71 TPLTDRCYITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNC-- 121 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c-- 121 (383)
-|--...+..+..++..+.. -++.||+|+||+++++.+|+.+-.. ++.+..
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 36667778888888877543 3478999999999999999987321 111211
Q ss_pred CCCCCHHHHHHHHhhh---hhcC--ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEE
Q psy6129 122 SDQMDYRGLGRIYKGL---AQSG--SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFI 196 (383)
Q Consensus 122 ~~~~~~~~l~~~l~g~---~~~g--~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~ 196 (383)
......+.+..+..-+ ...| .++++|+.+++..+.-..+ +..+-+ -.+++.|+.
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaL-------LKtLEE--------------Pp~~~~fiL 142 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANAL-------LKTLEE--------------PRPNTYFLL 142 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHH-------HHHhcC--------------CCCCeEEEE
Confidence 1223344444443332 1223 3456788887776654433 221111 013344444
Q ss_pred eeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHHh
Q psy6129 197 TMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLA 235 (383)
Q Consensus 197 T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~ 235 (383)
+++. ...|++.++||++.+.+..|+.+.+.+.+-.
T Consensus 143 ~t~~----~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 143 QADL----SAALLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred EECC----hHhCchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 4432 2589999999999999999998888766543
No 216
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0044 Score=59.36 Aligned_cols=144 Identities=12% Similarity=0.084 Sum_probs=87.6
Q ss_pred hhhHHHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC-------c-----------------EEEEeCC--
Q psy6129 72 PLTDRCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK-------Y-----------------VVVFNCS-- 122 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~-------~-----------------~~~~~c~-- 122 (383)
|-.+..|..+..++..+..+ ++.||+|+||++++.++|+.+-. + ++.+.-.
T Consensus 5 PWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~ 84 (334)
T PRK07993 5 PWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG 84 (334)
T ss_pred CCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc
Confidence 56677788888888776543 47899999999999999998721 0 1112111
Q ss_pred -CCCCHHHHHHHHhhhh---hcC--ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEE
Q psy6129 123 -DQMDYRGLGRIYKGLA---QSG--SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFI 196 (383)
Q Consensus 123 -~~~~~~~l~~~l~g~~---~~g--~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~ 196 (383)
.....+.+..+..-+. ..| .++++|+.+++..+.-..+ +..+.+- .++..|+.
T Consensus 85 ~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaL-------LKtLEEP--------------p~~t~fiL 143 (334)
T PRK07993 85 KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANAL-------LKTLEEP--------------PENTWFFL 143 (334)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHH-------HHHhcCC--------------CCCeEEEE
Confidence 1233444444443321 122 3566788777766654433 2211110 13344444
Q ss_pred eeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCC
Q psy6129 197 TMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFL 240 (383)
Q Consensus 197 T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~ 240 (383)
+++. ...|++.++||++.+.+..|+.+.+.+.+-...|..
T Consensus 144 ~t~~----~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~~ 183 (334)
T PRK07993 144 ACRE----PARLLATLRSRCRLHYLAPPPEQYALTWLSREVTMS 183 (334)
T ss_pred EECC----hhhChHHHHhccccccCCCCCHHHHHHHHHHccCCC
Confidence 4431 268999999999999999999888776654333543
No 217
>KOG0729|consensus
Probab=97.52 E-value=0.00027 Score=63.79 Aligned_cols=121 Identities=18% Similarity=0.172 Sum_probs=72.1
Q ss_pred HHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHH-----------hhhh-hcCceEEeccccc
Q psy6129 84 ALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIY-----------KGLA-QSGSWGCFDEFNR 151 (383)
Q Consensus 84 al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l-----------~g~~-~~g~w~~~dein~ 151 (383)
.+..-+|++++||||||||-.++++|+..+--++.+-.|+- +++++ .=+. ...+.++|||++-
T Consensus 207 gidppkgvllygppgtgktl~aravanrtdacfirvigsel-----vqkyvgegarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL-----VQKYVGEGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH-----HHHHhhhhHHHHHHHHHHhcccceEEEEeecccc
Confidence 45667888999999999999999999988776666554432 33322 1121 3346778999985
Q ss_pred CC-----------hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHH---Hhcc
Q psy6129 152 IE-----------LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLK---IQFR 217 (383)
Q Consensus 152 l~-----------~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~---~~fr 217 (383)
+. .++...+. ++.+++ ..|.. . -|+.+.++.|-. ..|.++|. ++=|
T Consensus 282 iggarfddg~ggdnevqrtml----eli~ql----dgfdp-r-------gnikvlmatnrp----dtldpallrpgrldr 341 (435)
T KOG0729|consen 282 IGGARFDDGAGGDNEVQRTML----ELINQL----DGFDP-R-------GNIKVLMATNRP----DTLDPALLRPGRLDR 341 (435)
T ss_pred ccCccccCCCCCcHHHHHHHH----HHHHhc----cCCCC-C-------CCeEEEeecCCC----CCcCHhhcCCccccc
Confidence 52 23322221 222222 12322 1 234455666632 35677765 3346
Q ss_pred ccccCCCCHHHH
Q psy6129 218 TVAMMVPDRQII 229 (383)
Q Consensus 218 ~v~~~~Pd~~~i 229 (383)
.|.+..||++-=
T Consensus 342 kvef~lpdlegr 353 (435)
T KOG0729|consen 342 KVEFGLPDLEGR 353 (435)
T ss_pred ceeccCCccccc
Confidence 788899997643
No 218
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0044 Score=58.88 Aligned_cols=133 Identities=10% Similarity=0.088 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC--------cEEEEeC--CCCCCHHHHHHHHhhh----
Q psy6129 75 DRCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK--------YVVVFNC--SDQMDYRGLGRIYKGL---- 137 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~--------~~~~~~c--~~~~~~~~l~~~l~g~---- 137 (383)
++....+..++..+..+ +++||.|+|||++++.+|+.+-. .++.+.. ......+.+..+..-+
T Consensus 10 ~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p 89 (313)
T PRK05564 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKP 89 (313)
T ss_pred HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCc
Confidence 34445566667655443 47899999999999999997621 1233433 1233445555554422
Q ss_pred -hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEee-CCCCCCCCcchHHHHHh
Q psy6129 138 -AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITM-NPGYAGRKELPENLKIQ 215 (383)
Q Consensus 138 -~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~-np~~~g~~~lp~~l~~~ 215 (383)
-.....+++|+.+++..+..+.+ +..+.+ ..+++.+++++ || ..+++.++++
T Consensus 90 ~~~~~kv~iI~~ad~m~~~a~naL-------LK~LEe--------------pp~~t~~il~~~~~-----~~ll~TI~SR 143 (313)
T PRK05564 90 YEGDKKVIIIYNSEKMTEQAQNAF-------LKTIEE--------------PPKGVFIILLCENL-----EQILDTIKSR 143 (313)
T ss_pred ccCCceEEEEechhhcCHHHHHHH-------HHHhcC--------------CCCCeEEEEEeCCh-----HhCcHHHHhh
Confidence 12234677899887776654433 211111 11334444444 33 4899999999
Q ss_pred ccccccCCCCHHHHHHHH
Q psy6129 216 FRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 216 fr~v~~~~Pd~~~i~ei~ 233 (383)
++.+.+..|+.+.+.+.+
T Consensus 144 c~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFI 161 (313)
T ss_pred ceeeeCCCcCHHHHHHHH
Confidence 999999999988876554
No 219
>KOG0481|consensus
Probab=97.51 E-value=0.00035 Score=68.29 Aligned_cols=123 Identities=17% Similarity=0.268 Sum_probs=77.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH---------HH--HHhh-h--hhcCceEEecccccCChhh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL---------GR--IYKG-L--AQSGSWGCFDEFNRIELPV 156 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l---------~~--~l~g-~--~~~g~w~~~dein~l~~~~ 156 (383)
++|.|.|||.|+.++|-+-+.. |+-+.....+.+..-+ +| ++.| + ...|+.+|+||||++.++-
T Consensus 367 VLLLGDPgtAKSQlLKFvEkvs--PIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~D 444 (729)
T KOG0481|consen 367 VLLLGDPGTAKSQLLKFVEKVS--PIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDD 444 (729)
T ss_pred EEEecCCchhHHHHHHHHHhcC--ceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchh
Confidence 4468999999999999877765 4444444444333322 12 2344 3 5679999999999998876
Q ss_pred HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCC---------CCcchHHHHHhccccccCC
Q psy6129 157 LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAG---------RKELPENLKIQFRTVAMMV 223 (383)
Q Consensus 157 ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g---------~~~lp~~l~~~fr~v~~~~ 223 (383)
.-++-+ |+.. +..-+-..|-+-.++..+.+.++.||-|+- .-++-+.+.++|-.+.+.+
T Consensus 445 RVAIHE-------AMEQ-QTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVK 512 (729)
T KOG0481|consen 445 RVAIHE-------AMEQ-QTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVK 512 (729)
T ss_pred hhHHHH-------HHHh-hhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEe
Confidence 444322 1111 111111245566778889999999995421 1245577889998777644
No 220
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0026 Score=60.34 Aligned_cols=145 Identities=18% Similarity=0.254 Sum_probs=85.9
Q ss_pred chhhHHHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCc---------------------EEEEeCCC---
Q psy6129 71 TPLTDRCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKY---------------------VVVFNCSD--- 123 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~---------------------~~~~~c~~--- 123 (383)
-|--+..+..+..++..+.-+ ++.||+|+||++++..+|+.+-.. ++.+...+
T Consensus 6 yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~ 85 (319)
T PRK08769 6 SPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT 85 (319)
T ss_pred cccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc
Confidence 356677888888888776544 478999999999999999876321 11111000
Q ss_pred ------CCCHHHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCe
Q psy6129 124 ------QMDYRGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEF 192 (383)
Q Consensus 124 ------~~~~~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 192 (383)
....+.+..+..-+. ....++++|+.+++..+.-..+ +.-+.+ -.+++
T Consensus 86 ~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaL-------LKtLEE--------------Pp~~~ 144 (319)
T PRK08769 86 GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNAL-------LKTLEE--------------PSPGR 144 (319)
T ss_pred cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHH-------HHHhhC--------------CCCCC
Confidence 011222222222111 1224556676666655543322 111111 12355
Q ss_pred eEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCCc
Q psy6129 193 GIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLE 241 (383)
Q Consensus 193 ~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~ 241 (383)
.|+.+++. ...|++.++||++.+.+..|+.+.+.+.+. ..|...
T Consensus 145 ~fiL~~~~----~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~-~~~~~~ 188 (319)
T PRK08769 145 YLWLISAQ----PARLPATIRSRCQRLEFKLPPAHEALAWLL-AQGVSE 188 (319)
T ss_pred eEEEEECC----hhhCchHHHhhheEeeCCCcCHHHHHHHHH-HcCCCh
Confidence 56666653 257999999999999999999988876654 446543
No 221
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.45 E-value=0.0015 Score=63.49 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=73.3
Q ss_pred HHHHccCCCCCcCCCCCCccHHHHHHHHH----hCCcEEEEeCCCCCCHHH-HHHHH---hhhhhcCceEEecccccCCh
Q psy6129 83 QALTMSMGGSPCGPAGTGKTETVKDMGKT----LAKYVVVFNCSDQMDYRG-LGRIY---KGLAQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 83 ~al~~~~~~~l~Gp~GtGKT~~i~~la~~----lg~~~~~~~c~~~~~~~~-l~~~l---~g~~~~g~w~~~dein~l~~ 154 (383)
..+..+...++.||+|||||.++.+++.. .| ..++... +.+.- .|....-..++|||+--++.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---------~f~T~a~Lf~~L~~~~lg~v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG---------GTITVAKLFYNISTRQIGLVGRWDVVAFDEVATLKF 274 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---------CcCcHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcC
Confidence 45678888889999999999999987765 23 3344444 22222 23444556789999998766
Q ss_pred hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHH
Q psy6129 155 PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 155 ~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l 234 (383)
+.-..+.+.+ .+-+.++ .|.. ..+.+. .+..++...|-...-...++. ..+|.++-=..-|...+=.++.
T Consensus 275 ~~~~~~v~im---K~yMesg--~fsR-G~~~~~--a~as~vfvGNi~~~v~~~~~~--~~Lf~~lP~~~~DsAflDRiH~ 344 (449)
T TIGR02688 275 AKPKELIGIL---KNYMESG--SFTR-GDETKS--SDASFVFLGNVPLTSEHMVKN--SDLFSPLPEFMRDSAFLDRIHG 344 (449)
T ss_pred CchHHHHHHH---HHHHHhC--ceec-cceeee--eeeEEEEEcccCCcchhhcCc--ccccccCChhhhhhHHHHhhhc
Confidence 5433332222 2223332 3332 233444 445555555542111111111 2334333111114455556666
Q ss_pred hhcCCCch
Q psy6129 235 ASCGFLEN 242 (383)
Q Consensus 235 ~~~gf~~~ 242 (383)
+.-|+.-+
T Consensus 345 yiPGWeip 352 (449)
T TIGR02688 345 YLPGWEIP 352 (449)
T ss_pred cCCCCcCc
Confidence 66666543
No 222
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.43 E-value=0.0021 Score=66.40 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=31.1
Q ss_pred HHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 77 CYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 77 ~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
....+..++..+...+++||+|||||++++.+++.+..
T Consensus 39 a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 39 AVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 34456666777777888999999999999999999874
No 223
>PRK08116 hypothetical protein; Validated
Probab=97.42 E-value=0.0006 Score=63.26 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=40.2
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCH----------HHHHHHHhhhhhcCceEEecccc
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDY----------RGLGRIYKGLAQSGSWGCFDEFN 150 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~----------~~l~~~l~g~~~~g~w~~~dein 150 (383)
.|.++.|++|||||.++.++|+.+ |.+++.++.++-++. .....++.. ......+++||+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~-l~~~dlLviDDlg 188 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRS-LVNADLLILDDLG 188 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHH-hcCCCEEEEeccc
Confidence 456789999999999999999876 777777775432110 001112222 3345689999995
No 224
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.40 E-value=0.00085 Score=62.10 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=36.5
Q ss_pred eeechhhHHHHHHHHHHHHccCC-CCCcCCCCCCccHHHHHHHHHhC
Q psy6129 68 LVITPLTDRCYITLAQALTMSMG-GSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 68 lv~Tp~t~r~~~~l~~al~~~~~-~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
+..|+...++...+..++....+ .+++||+|+|||++++.+++.+.
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 46677777777777777765554 45789999999999999999876
No 225
>PRK08181 transposase; Validated
Probab=97.40 E-value=0.0013 Score=60.99 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH-------HHHHHHhhhhhcC
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR-------GLGRIYKGLAQSG 141 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~-------~l~~~l~g~~~~g 141 (383)
+.....+......+..+.+.+++||+|||||.++.++|..+ |..++.++..+-.+.- .+.+.+.. ...-
T Consensus 90 ~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~-l~~~ 168 (269)
T PRK08181 90 KAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK-LDKF 168 (269)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH-HhcC
Confidence 33344433333456677778899999999999999998754 5555555532211100 01111111 2334
Q ss_pred ceEEecccccCChh
Q psy6129 142 SWGCFDEFNRIELP 155 (383)
Q Consensus 142 ~w~~~dein~l~~~ 155 (383)
..+++||+...+.+
T Consensus 169 dLLIIDDlg~~~~~ 182 (269)
T PRK08181 169 DLLILDDLAYVTKD 182 (269)
T ss_pred CEEEEeccccccCC
Confidence 68899999876654
No 226
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.37 E-value=0.0014 Score=59.17 Aligned_cols=94 Identities=19% Similarity=0.077 Sum_probs=55.4
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAV 166 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~ 166 (383)
.++|.|+.|||||+++|++...++ ..++.+.-..-.+...+...+.+ ......+++|++.--..+. ++ ..
T Consensus 54 nvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~-~~~kFIlf~DDLsFe~~d~-~y--k~--- 126 (249)
T PF05673_consen 54 NVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRD-RPYKFILFCDDLSFEEGDT-EY--KA--- 126 (249)
T ss_pred ceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhc-CCCCEEEEecCCCCCCCcH-HH--HH---
Confidence 456899999999999999998774 44555554444444444444432 2235677788865323332 11 11
Q ss_pred HHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC
Q psy6129 167 VLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP 200 (383)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np 200 (383)
+.++.++ ..-...+|+.+.+|+|-
T Consensus 127 -LKs~LeG---------gle~~P~NvliyATSNR 150 (249)
T PF05673_consen 127 -LKSVLEG---------GLEARPDNVLIYATSNR 150 (249)
T ss_pred -HHHHhcC---------ccccCCCcEEEEEecch
Confidence 2233332 22233578999999993
No 227
>PRK08118 topology modulation protein; Reviewed
Probab=97.35 E-value=0.00025 Score=60.96 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNC 121 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c 121 (383)
.+++||+|+|||++++.|++.+|.+++.+++
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 4678999999999999999999999776653
No 228
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0098 Score=57.66 Aligned_cols=135 Identities=14% Similarity=0.138 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC-c---------------------------------EE
Q psy6129 75 DRCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK-Y---------------------------------VV 117 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~-~---------------------------------~~ 117 (383)
++....+..++..+.-+ ++.||+|+||++++..+|+.+-. . ++
T Consensus 25 ~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~ 104 (365)
T PRK07471 25 AAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLL 104 (365)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeE
Confidence 44455666777765543 47899999999999999997721 1 00
Q ss_pred EEe--CCC-------CCCHHHHHHHHhhh---hhcC--ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCC
Q psy6129 118 VFN--CSD-------QMDYRGLGRIYKGL---AQSG--SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDG 183 (383)
Q Consensus 118 ~~~--c~~-------~~~~~~l~~~l~g~---~~~g--~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~ 183 (383)
.+. .++ ....+.+.++..-+ ...| .++++||.+.++.+....+ +..+.+-
T Consensus 105 ~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaL-------LK~LEep--------- 168 (365)
T PRK07471 105 TLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANAL-------LKVLEEP--------- 168 (365)
T ss_pred EEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHH-------HHHHhcC---------
Confidence 010 000 11122222222211 1223 3566899888887765543 2222221
Q ss_pred cEEEecCCeeE-EEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHHh
Q psy6129 184 DSIEMCPEFGI-FITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLA 235 (383)
Q Consensus 184 ~~i~~~~~~~i-f~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~ 235 (383)
.++..+ ++|-+| ..+++.++++++.+.+..|+.+.+.+.+-.
T Consensus 169 -----p~~~~~IL~t~~~-----~~llpti~SRc~~i~l~~l~~~~i~~~L~~ 211 (365)
T PRK07471 169 -----PARSLFLLVSHAP-----ARLLPTIRSRCRKLRLRPLAPEDVIDALAA 211 (365)
T ss_pred -----CCCeEEEEEECCc-----hhchHHhhccceEEECCCCCHHHHHHHHHH
Confidence 122333 344444 357888999999999999999988877644
No 229
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.004 Score=59.38 Aligned_cols=143 Identities=12% Similarity=0.077 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHHHHccCC--CCCcCCCCCCccHHHHHHHHHhCC--------c-----------------EEEEeCC--
Q psy6129 72 PLTDRCYITLAQALTMSMG--GSPCGPAGTGKTETVKDMGKTLAK--------Y-----------------VVVFNCS-- 122 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~--~~l~Gp~GtGKT~~i~~la~~lg~--------~-----------------~~~~~c~-- 122 (383)
|-.+..+..+..+ ....+ -++.||+|+|||++++.+|+.+-. + ++.+...
T Consensus 4 PW~~~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~ 82 (325)
T PRK08699 4 PWHQEQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD 82 (325)
T ss_pred CccHHHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc
Confidence 4455566666654 22222 347899999999999999998731 1 2333321
Q ss_pred --------CCCCHHHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEec
Q psy6129 123 --------DQMDYRGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMC 189 (383)
Q Consensus 123 --------~~~~~~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~ 189 (383)
.....+++..+..-+. ....++++|+++.++++....+...+ .+.. .
T Consensus 83 ~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~L-------Eep~------~------- 142 (325)
T PRK08699 83 EPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVL-------EEPP------P------- 142 (325)
T ss_pred cccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHH-------HhCc------C-------
Confidence 1234555555554432 22245667888888877655442222 1110 0
Q ss_pred CCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCCc
Q psy6129 190 PEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLE 241 (383)
Q Consensus 190 ~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~ 241 (383)
....+++|-|+ ..+++.++++++.+.+..|+.+.+.+.+. ..|...
T Consensus 143 ~~~~Ilvth~~-----~~ll~ti~SRc~~~~~~~~~~~~~~~~L~-~~~~~~ 188 (325)
T PRK08699 143 QVVFLLVSHAA-----DKVLPTIKSRCRKMVLPAPSHEEALAYLR-ERGVAE 188 (325)
T ss_pred CCEEEEEeCCh-----HhChHHHHHHhhhhcCCCCCHHHHHHHHH-hcCCCc
Confidence 11234445444 47899999999999999999888776553 345543
No 230
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.29 E-value=0.002 Score=65.01 Aligned_cols=192 Identities=16% Similarity=0.210 Sum_probs=117.7
Q ss_pred eeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC--CcEEEEeCCCCCCHHH---HHHHH----hhh-
Q psy6129 68 LVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA--KYVVVFNCSDQMDYRG---LGRIY----KGL- 137 (383)
Q Consensus 68 lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg--~~~~~~~c~~~~~~~~---l~~~l----~g~- 137 (383)
...-|.+.+++..+........+.++.|++||||-.+++++-...+ -|++.+||....+.-. +=.+. .|+
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~ 395 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGAR 395 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccch
Confidence 3556778888888888888889999999999999999998877665 5789999987654321 11111 122
Q ss_pred ---------hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC---CC
Q psy6129 138 ---------AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA---GR 205 (383)
Q Consensus 138 ---------~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~---g~ 205 (383)
...|..+++|||--+|.+..|.+ ++-+.++ .+...+|..++ -+++++++++-+-. -.
T Consensus 396 ~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~L-------LrVl~e~--~v~p~g~~~~~--vdirvi~ath~dl~~lv~~ 464 (606)
T COG3284 396 RKGYKGKLEQADGGTLFLDEIGDMPLALQSRL-------LRVLQEG--VVTPLGGTRIK--VDIRVIAATHRDLAQLVEQ 464 (606)
T ss_pred hccccccceecCCCccHHHHhhhchHHHHHHH-------HHHHhhC--ceeccCCccee--EEEEEEeccCcCHHHHHHc
Confidence 13467889999999999888775 4455554 34444666655 46899999874211 01
Q ss_pred CcchHHHHHhccccccCCCC-------HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCcc--ChhhhHHH
Q psy6129 206 KELPENLKIQFRTVAMMVPD-------RQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLTKQVHYDF--GLRNILSV 276 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd-------~~~i~ei~l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f--~lR~l~~v 276 (383)
..+-+.|--+..-.-+..|. ...+.+++..... ....|.+.... .-.+|.| |.|++.+|
T Consensus 465 g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~--~~~~l~~~~~~----------~l~~~~WPGNirel~~v 532 (606)
T COG3284 465 GRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREND--WRLQLDDDALA----------RLLAYRWPGNIRELDNV 532 (606)
T ss_pred CCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccC--CCccCCHHHHH----------HHHhCCCCCcHHHHHHH
Confidence 12233333233333344444 3345555544333 11122221111 1135666 69999999
Q ss_pred HHhcch
Q psy6129 277 LRSLGA 282 (383)
Q Consensus 277 i~~~~~ 282 (383)
|..+..
T Consensus 533 ~~~~~~ 538 (606)
T COG3284 533 IERLAA 538 (606)
T ss_pred HHHHHH
Confidence 987654
No 231
>PHA02624 large T antigen; Provisional
Probab=97.28 E-value=0.00049 Score=69.50 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=70.8
Q ss_pred HHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccC----
Q psy6129 77 CYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRI---- 152 (383)
Q Consensus 77 ~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l---- 152 (383)
++..++..+.-+.+.+++||+|||||+++++|++.+|--...+||+..-. ++-.|.+.....++||++-..
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks-----~FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL-----NFELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh-----HHHhhhhhhceEEEeeecccccccc
Confidence 33333333334445678999999999999999999954456677655433 244455555666677776421
Q ss_pred ---ChhhHHHHHHHHHHHHHHHHhcCceeEec----CCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcccccc
Q psy6129 153 ---ELPVLSVAAQQVAVVLAAKKEKKKSFVFT----DGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAM 221 (383)
Q Consensus 153 ---~~~~ls~l~~~~~~i~~~~~~~~~~~~~~----~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~ 221 (383)
|+.. .+. .+..+.+++ ++.-.+.+. +-..++..| .++|+|. ..||..++.||+.+..
T Consensus 495 ~~Lp~G~--~~d-Nl~~lRn~L-DG~V~v~ld~KH~n~~q~~~PP---lliT~Ne-----y~iP~T~~~Rf~~~~~ 558 (647)
T PHA02624 495 KDLPSGQ--GMN-NLDNLRDYL-DGSVPVNLEKKHLNKRSQIFPP---GIVTMNE-----YLIPQTVKARFAKVLD 558 (647)
T ss_pred ccCCccc--ccc-hhhHHHhhc-CCCCccccchhccCchhccCCC---eEEeecC-----cccchhHHHHHHHhcc
Confidence 1111 111 001112222 222111110 111233333 6789994 4799999999976543
No 232
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.24 E-value=0.00022 Score=69.26 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=32.7
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM 125 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~ 125 (383)
.+.+++||||||||++++.+|+.++.+++.++++..+
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceee
Confidence 4567899999999999999999999999999987543
No 233
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0054 Score=58.72 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.0
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHHhhcCCCc
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLE 241 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~ 241 (383)
..|++.++||++.+.+..|+.+.+.+.+-. .|...
T Consensus 173 ~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~-~~~~~ 207 (342)
T PRK06964 173 DRLLPTILSRCRQFPMTVPAPEAAAAWLAA-QGVAD 207 (342)
T ss_pred hhCcHHHHhcCEEEEecCCCHHHHHHHHHH-cCCCh
Confidence 589999999999999999998888776543 35543
No 234
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.23 E-value=0.0071 Score=51.63 Aligned_cols=123 Identities=11% Similarity=0.110 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC-----------------------cEEEEeCCCC---CC
Q psy6129 76 RCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK-----------------------YVVVFNCSDQ---MD 126 (383)
Q Consensus 76 r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~-----------------------~~~~~~c~~~---~~ 126 (383)
+.+..+..+++.+.-+ ++.||.|+||++++..+|+.+-. .++.++-... ..
T Consensus 4 ~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~ 83 (162)
T PF13177_consen 4 EIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIK 83 (162)
T ss_dssp HHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBS
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhh
Confidence 4455566667665444 46899999999999999987621 1344444432 45
Q ss_pred HHHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC
Q psy6129 127 YRGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG 201 (383)
Q Consensus 127 ~~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~ 201 (383)
.+++..+..-+. .....+++||++++..+...++ ++.+-+- .+++.|+++++.
T Consensus 84 i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaL-------LK~LEep--------------p~~~~fiL~t~~- 141 (162)
T PF13177_consen 84 IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNAL-------LKTLEEP--------------PENTYFILITNN- 141 (162)
T ss_dssp HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHH-------HHHHHST--------------TTTEEEEEEES--
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHH-------HHHhcCC--------------CCCEEEEEEECC-
Confidence 566665554332 2234678899999988886654 2222221 134556666652
Q ss_pred CCCCCcchHHHHHhccccccCC
Q psy6129 202 YAGRKELPENLKIQFRTVAMMV 223 (383)
Q Consensus 202 ~~g~~~lp~~l~~~fr~v~~~~ 223 (383)
...+++.++||+..+.+..
T Consensus 142 ---~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 142 ---PSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp ---GGGS-HHHHTTSEEEEE--
T ss_pred ---hHHChHHHHhhceEEecCC
Confidence 4689999999998887643
No 235
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.18 E-value=0.001 Score=64.21 Aligned_cols=123 Identities=22% Similarity=0.208 Sum_probs=72.5
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCC-cEEEEeCCCCCCH--HH----------HHHHHhhhhhcCceEEecccccCC
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAK-YVVVFNCSDQMDY--RG----------LGRIYKGLAQSGSWGCFDEFNRIE 153 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~-~~~~~~c~~~~~~--~~----------l~~~l~g~~~~g~w~~~dein~l~ 153 (383)
...|..|.||.|+|||.+.-.+-..+.. .-..+++++-+.. +. +..+...++.....+|||||.--+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~D 140 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVTD 140 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeeccc
Confidence 3466778999999999999888887754 3344555554321 11 222333445566688999998543
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC--C--CCC---CCc---chHHHHHhccccccCC
Q psy6129 154 LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP--G--YAG---RKE---LPENLKIQFRTVAMMV 223 (383)
Q Consensus 154 ~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np--~--~~g---~~~---lp~~l~~~fr~v~~~~ 223 (383)
... +-.+..+++.+.++ +..+++|+|- + |.+ +.. .=+.|++++.++.+.-
T Consensus 141 iaD----Amil~rLf~~l~~~----------------gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~ 200 (362)
T PF03969_consen 141 IAD----AMILKRLFEALFKR----------------GVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDG 200 (362)
T ss_pred hhH----HHHHHHHHHHHHHC----------------CCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecC
Confidence 332 11222333333332 2457889984 2 221 222 1245678888999987
Q ss_pred C-CHHHH
Q psy6129 224 P-DRQII 229 (383)
Q Consensus 224 P-d~~~i 229 (383)
+ |+...
T Consensus 201 ~~DyR~~ 207 (362)
T PF03969_consen 201 GVDYRRR 207 (362)
T ss_pred CCchhhh
Confidence 7 76653
No 236
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.17 E-value=0.00026 Score=68.83 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=33.5
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD 126 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~ 126 (383)
...++.||+|+|||++++.+|+.++.+++.++++..+.
T Consensus 51 ~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e 88 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (443)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhcc
Confidence 34568999999999999999999999999999986553
No 237
>PRK09183 transposase/IS protein; Provisional
Probab=97.11 E-value=0.00089 Score=61.82 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=45.6
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCH---H----HHHHHHhhhhhcCceEEecccccCCh
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDY---R----GLGRIYKGLAQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~---~----~l~~~l~g~~~~g~w~~~dein~l~~ 154 (383)
+..+...++.||+|||||+++.+++..+ |..+..+++.+-... . .+.+.+......-..+++||+...+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPF 178 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCC
Confidence 4566677899999999999999997654 666666665432110 0 12233333334446889999986544
Q ss_pred h
Q psy6129 155 P 155 (383)
Q Consensus 155 ~ 155 (383)
+
T Consensus 179 ~ 179 (259)
T PRK09183 179 S 179 (259)
T ss_pred C
Confidence 4
No 238
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.10 E-value=0.00025 Score=57.12 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.4
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
++.||||+|||++++.||+.+|.+++
T Consensus 3 ~I~G~~gsGKST~a~~La~~~~~~~i 28 (121)
T PF13207_consen 3 IISGPPGSGKSTLAKELAERLGFPVI 28 (121)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 57899999999999999999997754
No 239
>PRK06921 hypothetical protein; Provisional
Probab=97.00 E-value=0.0027 Score=58.82 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=38.6
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCCCCCHHHHHHHHh------hhhhcCceEEeccccc
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSDQMDYRGLGRIYK------GLAQSGSWGCFDEFNR 151 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~~~~~~~l~~~l~------g~~~~g~w~~~dein~ 151 (383)
..+.++.||+|+|||.++.++|+.+ |..++.++..+..+ .+...+. .....-..+++||+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~--~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG--DLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH--HHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4556789999999999999999876 44555555322111 1111111 1234567899999943
No 240
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.99 E-value=0.011 Score=55.97 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=82.1
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHH---------hhh--hhcCceEEecccccCCh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIY---------KGL--AQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l---------~g~--~~~g~w~~~dein~l~~ 154 (383)
.|-++.|++||||-.++++.-... ..|+..+||-.--+...=+..+ +|. ...|..+++|||-.+++
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp 307 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP 307 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH
Confidence 345578999999999888644333 3689999997654433222333 232 45688889999998888
Q ss_pred hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC---CCCCCcchHHHHHhccccccCCCCHH
Q psy6129 155 PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG---YAGRKELPENLKIQFRTVAMMVPDRQ 227 (383)
Q Consensus 155 ~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~---~~g~~~lp~~l~~~fr~v~~~~Pd~~ 227 (383)
....-+ ++-+.++ .|-. -|+.-.++-+.++++|+... +....++-+.|--+...+++..|...
T Consensus 308 ~lQaKL-------LRFL~DG--tFRR-VGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLR 373 (511)
T COG3283 308 RLQAKL-------LRFLNDG--TFRR-VGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLR 373 (511)
T ss_pred HHHHHH-------HHHhcCC--ceee-cCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccc
Confidence 775443 3444444 3433 45555566779999987642 22334555555556667777777643
No 241
>KOG0477|consensus
Probab=96.98 E-value=0.0016 Score=65.28 Aligned_cols=120 Identities=20% Similarity=0.237 Sum_probs=69.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH---------HH--HH-hhh--hhcCceEEecccccCChhh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL---------GR--IY-KGL--AQSGSWGCFDEFNRIELPV 156 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l---------~~--~l-~g~--~~~g~w~~~dein~l~~~~ 156 (383)
++|+|.|||||+..+|..++...|-++.-- .+-++.-+ ++ .+ .|+ ...++.+++|||+++...-
T Consensus 485 vLL~GDPGTaKSQFLKY~eK~s~RAV~tTG--qGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqD 562 (854)
T KOG0477|consen 485 VLLLGDPGTAKSQFLKYAEKTSPRAVFTTG--QGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQD 562 (854)
T ss_pred EEEecCCCccHHHHHHHHHhcCcceeEecc--CCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccc
Confidence 358999999999999999998888765431 11111111 11 12 233 4567788999999887654
Q ss_pred HHHHHHHHHHHHHHHHhcCceeEe-cCCcEEEecCCeeEEEeeCC---CCCCC------CcchHHHHHhcccccc
Q psy6129 157 LSVAAQQVAVVLAAKKEKKKSFVF-TDGDSIEMCPEFGIFITMNP---GYAGR------KELPENLKIQFRTVAM 221 (383)
Q Consensus 157 ls~l~~~~~~i~~~~~~~~~~~~~-~~~~~i~~~~~~~if~T~np---~~~g~------~~lp~~l~~~fr~v~~ 221 (383)
...+- .|+... .+.+ ..|-.-.++..|.++++.|| .|.+. -+|.+-+.++|-.+.+
T Consensus 563 RtSIH-------EAMEQQ--SISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcV 628 (854)
T KOG0477|consen 563 RTSIH-------EAMEQQ--SISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCV 628 (854)
T ss_pred cchHH-------HHHHhc--chhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeee
Confidence 33322 222111 1111 12222234566888999999 34322 2455566787766554
No 242
>PRK06526 transposase; Provisional
Probab=96.98 E-value=0.0019 Score=59.31 Aligned_cols=72 Identities=21% Similarity=0.133 Sum_probs=42.8
Q ss_pred HHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH-------HHHHHHhhhhhcCceEEecccccC
Q psy6129 83 QALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR-------GLGRIYKGLAQSGSWGCFDEFNRI 152 (383)
Q Consensus 83 ~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~-------~l~~~l~g~~~~g~w~~~dein~l 152 (383)
..+..+.+.+++||+|||||.++.+++..+ |..+..++++.-++.- .+.+.+..+ ..-..+++||+...
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l-~~~dlLIIDD~g~~ 171 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL-GRYPLLIVDEVGYI 171 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh-ccCCEEEEcccccC
Confidence 345566778899999999999999998765 5554443332110000 011111111 23367899999977
Q ss_pred Chh
Q psy6129 153 ELP 155 (383)
Q Consensus 153 ~~~ 155 (383)
+.+
T Consensus 172 ~~~ 174 (254)
T PRK06526 172 PFE 174 (254)
T ss_pred CCC
Confidence 643
No 243
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.97 E-value=0.0018 Score=62.81 Aligned_cols=99 Identities=19% Similarity=0.231 Sum_probs=66.1
Q ss_pred chhhHHHHHHHHHHHHccCCCC--CcCCCCCCccHHHHHHHHHhCCc--EEEEeCCCCCCHHHH--HHHHh-----h---
Q psy6129 71 TPLTDRCYITLAQALTMSMGGS--PCGPAGTGKTETVKDMGKTLAKY--VVVFNCSDQMDYRGL--GRIYK-----G--- 136 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~--l~Gp~GtGKT~~i~~la~~lg~~--~~~~~c~~~~~~~~l--~~~l~-----g--- 136 (383)
++.-.+++..+..++....+.. +.||+|||||.+++++...+... .+.+.++.++-+..+ |+.+- +
T Consensus 3 n~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~ 82 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINN 82 (364)
T ss_pred CHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccc
Confidence 4455677888888886655544 67999999999999998877432 334444444443334 22210 0
Q ss_pred ----------------hhhcCceEEecccccCChhhHHHHHHHHHHHHH
Q psy6129 137 ----------------LAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLA 169 (383)
Q Consensus 137 ----------------~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~ 169 (383)
....=.++++||+.++...++..+.+.++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~~~~l~~i~~~lr~i~~ 131 (364)
T PF05970_consen 83 NEKSQCKISKNSRLRERLRKADVLIIDEISMVSADMLDAIDRRLRDIRK 131 (364)
T ss_pred cccccccccccchhhhhhhhheeeecccccchhHHHHHHHHHhhhhhhc
Confidence 112235789999999999999988887766653
No 244
>PRK12377 putative replication protein; Provisional
Probab=96.96 E-value=0.0018 Score=59.15 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=39.2
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH--------HHHHHHhhhhhcCceEEecccccC
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR--------GLGRIYKGLAQSGSWGCFDEFNRI 152 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~--------~l~~~l~g~~~~g~w~~~dein~l 152 (383)
.+.++.||+|||||.++.++|+.+ |..+..++..+-++.- ....++. ....-..+++||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~-~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQ-ELCKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHH-HhcCCCEEEEcCCCCC
Confidence 345688999999999999999887 4555555543211100 0011111 1345678999999644
No 245
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.95 E-value=0.00044 Score=54.76 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=38.0
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELP 155 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~ 155 (383)
.+.||+|+|||.+++.||+.+...+-.-..+.......-..+..|-. .-..+++||+.....+
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~-~q~vvi~DD~~~~~~~ 64 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ-GQPVVIIDDFGQDNDG 64 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC-CCcEEEEeecCccccc
Confidence 57899999999999999988864431011011101111223444544 3466789999977755
No 246
>PRK07261 topology modulation protein; Provisional
Probab=96.93 E-value=0.0013 Score=56.71 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
.+++|++|+|||++++.+++.+|.+.+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~ 30 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLH 30 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEe
Confidence 3578999999999999999999988543
No 247
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.0027 Score=60.60 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=41.1
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHH-H---------hhhhhcCceEEecccccCC
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRI-Y---------KGLAQSGSWGCFDEFNRIE 153 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~-l---------~g~~~~g~w~~~dein~l~ 153 (383)
.+.+.+++||+|||||.++.++|+.+ |..+..++..+-++ .+... + ......-..+++||+....
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~--~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE--ILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH--HHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC
Confidence 34566789999999999999999977 55555555433211 11110 0 1122344688999996554
Q ss_pred h
Q psy6129 154 L 154 (383)
Q Consensus 154 ~ 154 (383)
.
T Consensus 260 ~ 260 (329)
T PRK06835 260 I 260 (329)
T ss_pred C
Confidence 3
No 248
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.89 E-value=0.006 Score=56.48 Aligned_cols=97 Identities=9% Similarity=0.073 Sum_probs=63.6
Q ss_pred cceeechhhHHHHHHHHHHHHccCC-CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHH----HHHhhh--h
Q psy6129 66 ERLVITPLTDRCYITLAQALTMSMG-GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLG----RIYKGL--A 138 (383)
Q Consensus 66 ~~lv~Tp~t~r~~~~l~~al~~~~~-~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~----~~l~g~--~ 138 (383)
-.+|.-+..-+....+...|+...| .+|+|..|+||+++++-.|.+.+..++.+..+...+.++.. +++..+ -
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~ 87 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIK 87 (268)
T ss_dssp ------HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS
T ss_pred cceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhcc
Confidence 3578888888888888899876554 45899999999999998888999999999888887766544 444323 2
Q ss_pred hcCceEEecccccCChhhHHHHHH
Q psy6129 139 QSGSWGCFDEFNRIELPVLSVAAQ 162 (383)
Q Consensus 139 ~~g~w~~~dein~l~~~~ls~l~~ 162 (383)
.....+.++|-+...+..|..+-.
T Consensus 88 ~~~~vfll~d~qi~~~~fLe~in~ 111 (268)
T PF12780_consen 88 GKPTVFLLTDSQIVDESFLEDINS 111 (268)
T ss_dssp -S-EEEEEECCCSSSCHHHHHHHH
T ss_pred CCCeEEEecCcccchHhHHHHHHH
Confidence 334566667755555544444433
No 249
>PHA02774 E1; Provisional
Probab=96.88 E-value=0.0047 Score=62.31 Aligned_cols=113 Identities=15% Similarity=0.106 Sum_probs=61.3
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC-CcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA-KYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVL 168 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg-~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~ 168 (383)
+.+++||||||||.++.++++.++ +-+-.+|..++.- .+-+....++++||+.. ...+++-.. +
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~Fw--------Lqpl~d~ki~vlDD~t~---~~w~y~d~~----L 500 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFW--------LQPLADAKIALLDDATH---PCWDYIDTY----L 500 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccccc--------cchhccCCEEEEecCcc---hHHHHHHHH----H
Confidence 345789999999999999999985 4444567644332 22233456889999832 233344333 3
Q ss_pred HHHHhcCceeE-ec--CCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcccccc
Q psy6129 169 AAKKEKKKSFV-FT--DGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAM 221 (383)
Q Consensus 169 ~~~~~~~~~~~-~~--~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~ 221 (383)
+.+.+++.... .. ....++. ..+++|+|.+-... .-=..|.+|...+.+
T Consensus 501 rn~LdG~~v~lD~Khk~~~q~k~---pPlIITSN~d~~~~-~~~~yL~sRi~~f~F 552 (613)
T PHA02774 501 RNALDGNPVSIDCKHKAPVQIKC---PPLLITSNIDVKAE-DRYKYLHSRITVFEF 552 (613)
T ss_pred HHHcCCCcceeeecccCcccccC---CCEEEecCCCcccc-hhhHHhhhhEEEEEC
Confidence 44445442111 11 1112222 35789999643221 111234455555544
No 250
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.88 E-value=0.00045 Score=64.88 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHc----cCCCCCcCCCCCCccHHHHHHHHHhC--CcEEEEeCCCCCCHH
Q psy6129 74 TDRCYITLAQALTM----SMGGSPCGPAGTGKTETVKDMGKTLA--KYVVVFNCSDQMDYR 128 (383)
Q Consensus 74 t~r~~~~l~~al~~----~~~~~l~Gp~GtGKT~~i~~la~~lg--~~~~~~~c~~~~~~~ 128 (383)
..++.-.+...+++ ++++++.||||||||.++-.+|+.|| .|++.++.|+-.+.+
T Consensus 47 AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E 107 (450)
T COG1224 47 AREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLE 107 (450)
T ss_pred HHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeec
Confidence 44455555555654 46677899999999999999999998 688999999876543
No 251
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.86 E-value=0.0022 Score=58.53 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=41.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC---------HHHHHHHHhhhhhcCceEEecccccCCh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD---------YRGLGRIYKGLAQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~---------~~~l~~~l~g~~~~g~w~~~dein~l~~ 154 (383)
+.++.|++|||||+++.++|..+ |..+..++..+-.. .....+++..+ ..-.++++||+.....
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l-~~~dlLvIDDig~~~~ 176 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL-SNVDLLVIDEIGVQTE 176 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh-ccCCEEEEeCCCCCCC
Confidence 55689999999999999999988 66666664422110 00011222222 3456899999987653
No 252
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.029 Score=53.25 Aligned_cols=133 Identities=11% Similarity=0.074 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhC-Cc-----------------EEEEeCCC-----------
Q psy6129 76 RCYITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLA-KY-----------------VVVFNCSD----------- 123 (383)
Q Consensus 76 r~~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg-~~-----------------~~~~~c~~----------- 123 (383)
.....+..++..+.- -+++||.|+||++++..+|+.+- .. ++.+....
T Consensus 11 ~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~ 90 (314)
T PRK07399 11 LAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASE 90 (314)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhh
Confidence 344556666766542 34789999999999999999762 21 11111110
Q ss_pred ------------CCCHHHHHHHHhhh-----hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEE
Q psy6129 124 ------------QMDYRGLGRIYKGL-----AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSI 186 (383)
Q Consensus 124 ------------~~~~~~l~~~l~g~-----~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i 186 (383)
....+.+..+..-+ .....++++|+.+++.......+ +..+.+
T Consensus 91 ~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaL-------LK~LEE------------- 150 (314)
T PRK07399 91 AEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANAL-------LKTLEE------------- 150 (314)
T ss_pred hhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHH-------HHHHhC-------------
Confidence 01112222222111 12335667788887766654432 221111
Q ss_pred EecCCeeEEEee-CCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHHh
Q psy6129 187 EMCPEFGIFITM-NPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLA 235 (383)
Q Consensus 187 ~~~~~~~if~T~-np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~ 235 (383)
.|++.|++++ +| ..|++.++||+..+.+..|+.+.+.+.+-.
T Consensus 151 --Pp~~~fILi~~~~-----~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~ 193 (314)
T PRK07399 151 --PGNGTLILIAPSP-----ESLLPTIVSRCQIIPFYRLSDEQLEQVLKR 193 (314)
T ss_pred --CCCCeEEEEECCh-----HhCcHHHHhhceEEecCCCCHHHHHHHHHH
Confidence 1233344444 44 589999999999999999999888777653
No 253
>PF13245 AAA_19: Part of AAA domain
Probab=96.78 E-value=0.002 Score=47.55 Aligned_cols=39 Identities=36% Similarity=0.440 Sum_probs=25.3
Q ss_pred HHHHccCCCCC-cCCCCCCccHHHHH-HHHHh------CCcEEEEeCC
Q psy6129 83 QALTMSMGGSP-CGPAGTGKTETVKD-MGKTL------AKYVVVFNCS 122 (383)
Q Consensus 83 ~al~~~~~~~l-~Gp~GtGKT~~i~~-la~~l------g~~~~~~~c~ 122 (383)
.++. +.+..+ .||||||||+++.+ ++..+ |..+.++..+
T Consensus 5 ~al~-~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 5 RALA-GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred HHHh-hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 4555 444444 89999999977754 55555 5666666544
No 254
>KOG0652|consensus
Probab=96.76 E-value=0.004 Score=56.25 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=68.9
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhh-----------hh--hcCceEEecccccC
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKG-----------LA--QSGSWGCFDEFNRI 152 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g-----------~~--~~g~w~~~dein~l 152 (383)
+.-+|++.+||||||||.++++.|....-.+..+.. + .+-+.+.| ++ ...+.+++||++-+
T Consensus 203 ~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAg-----P-QLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAI 276 (424)
T KOG0652|consen 203 RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAG-----P-QLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAI 276 (424)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcc-----h-HHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhh
Confidence 456778899999999999999988765433222211 1 12222222 12 45678899999855
Q ss_pred ChhhH---HHHHHH----HHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHh---ccccccC
Q psy6129 153 ELPVL---SVAAQQ----VAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQ---FRTVAMM 222 (383)
Q Consensus 153 ~~~~l---s~l~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~---fr~v~~~ 222 (383)
...-. ...-.. ..++++++. .|. -+....++++.|.- .-|+++|.+. =|.+.+.
T Consensus 277 GtKRfDSek~GDREVQRTMLELLNQLD----GFs--------s~~~vKviAATNRv----DiLDPALlRSGRLDRKIEfP 340 (424)
T KOG0652|consen 277 GTKRFDSEKAGDREVQRTMLELLNQLD----GFS--------SDDRVKVIAATNRV----DILDPALLRSGRLDRKIEFP 340 (424)
T ss_pred ccccccccccccHHHHHHHHHHHHhhc----CCC--------CccceEEEeecccc----cccCHHHhhcccccccccCC
Confidence 22100 011111 112222221 111 12445678888842 3566777543 3678888
Q ss_pred CCCHHH---HHHHH
Q psy6129 223 VPDRQI---IIRVK 233 (383)
Q Consensus 223 ~Pd~~~---i~ei~ 233 (383)
.|+... |.+|+
T Consensus 341 ~Pne~aRarIlQIH 354 (424)
T KOG0652|consen 341 HPNEEARARILQIH 354 (424)
T ss_pred CCChHHHHHHHHHh
Confidence 888654 44444
No 255
>PRK10536 hypothetical protein; Provisional
Probab=96.75 E-value=0.0059 Score=55.73 Aligned_cols=40 Identities=23% Similarity=0.087 Sum_probs=28.8
Q ss_pred echhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHH
Q psy6129 70 ITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 70 ~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
+.|.+......+ .++..+.-+.+.||+|||||.++.++|.
T Consensus 57 i~p~n~~Q~~~l-~al~~~~lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 57 ILARNEAQAHYL-KAIESKQLIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred ccCCCHHHHHHH-HHHhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 455555444433 3566666677889999999999998887
No 256
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.69 E-value=0.00045 Score=65.68 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=46.5
Q ss_pred cceeechhhHHHHHHHHHHHHcc----CCCCCcCCCCCCccHHHHHHHHHhC--CcEEEEeCCCCCCHH
Q psy6129 66 ERLVITPLTDRCYITLAQALTMS----MGGSPCGPAGTGKTETVKDMGKTLA--KYVVVFNCSDQMDYR 128 (383)
Q Consensus 66 ~~lv~Tp~t~r~~~~l~~al~~~----~~~~l~Gp~GtGKT~~i~~la~~lg--~~~~~~~c~~~~~~~ 128 (383)
..+|----..++...+...++.+ .+.++.||||||||.++-++|+.|| .|+..++.|+-.+.+
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e 92 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSE 92 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTT
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecc
Confidence 35666666777777777777654 4456899999999999999999999 689999999876543
No 257
>PF05729 NACHT: NACHT domain
Probab=96.67 E-value=0.0049 Score=52.07 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l 112 (383)
..+.|++|+|||++++.++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 3578999999999999998766
No 258
>KOG2170|consensus
Probab=96.63 E-value=0.016 Score=53.61 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=47.9
Q ss_pred CcCCCCCCccHHHHHHHHHh---CC--c-----EEEEeCCCCCCHHH----HHHHHhhhhh--cCceEEecccccCChhh
Q psy6129 93 PCGPAGTGKTETVKDMGKTL---AK--Y-----VVVFNCSDQMDYRG----LGRIYKGLAQ--SGSWGCFDEFNRIELPV 156 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~l---g~--~-----~~~~~c~~~~~~~~----l~~~l~g~~~--~g~w~~~dein~l~~~~ 156 (383)
+.|++||||.-..+-+|+.+ |. + +-+.+|...--.++ +.+-+.|..+ ..+.++|||++++++++
T Consensus 115 fHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gL 194 (344)
T KOG2170|consen 115 FHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGL 194 (344)
T ss_pred ecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhH
Confidence 57999999999999999876 32 2 12345544332222 3444445332 35688899999999999
Q ss_pred HHHHHHHH
Q psy6129 157 LSVAAQQV 164 (383)
Q Consensus 157 ls~l~~~~ 164 (383)
+..+...+
T Consensus 195 ld~lkpfL 202 (344)
T KOG2170|consen 195 LDVLKPFL 202 (344)
T ss_pred HHHHhhhh
Confidence 88775544
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.61 E-value=0.012 Score=49.35 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=28.2
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD 126 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~ 126 (383)
++.||+|+|||+++..++..+ |.+++.+++.....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 578999999999999998877 56777777765543
No 260
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.56 E-value=0.0056 Score=53.17 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=44.8
Q ss_pred HHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCH-------HHHHHHHhhhhhcCceEEecccccC
Q psy6129 83 QALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDY-------RGLGRIYKGLAQSGSWGCFDEFNRI 152 (383)
Q Consensus 83 ~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~-------~~l~~~l~g~~~~g~w~~~dein~l 152 (383)
..+..+.+.++.||+|||||.++.++++.+ |..+..++.++-++. ....+.+.- ...-..+++||+-..
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~-l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR-LKRVDLLILDDLGYE 120 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH-HHTSSCEEEETCTSS
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc-cccccEeccccccee
Confidence 334556677889999999999999998754 677766664321100 001112222 234467889999755
Q ss_pred ChhhHHHHHHHHHHHHHH
Q psy6129 153 ELPVLSVAAQQVAVVLAA 170 (383)
Q Consensus 153 ~~~~ls~l~~~~~~i~~~ 170 (383)
+..- ...+.+..+++.
T Consensus 121 ~~~~--~~~~~l~~ii~~ 136 (178)
T PF01695_consen 121 PLSE--WEAELLFEIIDE 136 (178)
T ss_dssp ---H--HHHHCTHHHHHH
T ss_pred eecc--cccccchhhhhH
Confidence 4332 233344444443
No 261
>KOG0651|consensus
Probab=96.49 E-value=0.0028 Score=58.64 Aligned_cols=69 Identities=22% Similarity=0.194 Sum_probs=47.9
Q ss_pred HHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHH--HHHHHh----hh-hhcCceEEecccccC
Q psy6129 84 ALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRG--LGRIYK----GL-AQSGSWGCFDEFNRI 152 (383)
Q Consensus 84 al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~--l~~~l~----g~-~~~g~w~~~dein~l 152 (383)
.++.-++++|.||+|||||-+++.+|+.+|..++.+..++-.+-.. -.|++. -+ -...+.+++||++-.
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAi 237 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAI 237 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhh
Confidence 3445566778999999999999999999999988877766543221 233332 22 223477788999844
No 262
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.47 E-value=0.0019 Score=65.30 Aligned_cols=32 Identities=38% Similarity=0.379 Sum_probs=27.5
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
+|+||+|||||++++.||+.+|..+..+....
T Consensus 49 lLtGP~G~GKtttv~~La~elg~~v~Ew~np~ 80 (519)
T PF03215_consen 49 LLTGPSGCGKTTTVKVLAKELGFEVQEWINPV 80 (519)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeeEEecCCC
Confidence 46899999999999999999999887775433
No 263
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.46 E-value=0.0051 Score=54.31 Aligned_cols=75 Identities=24% Similarity=0.222 Sum_probs=44.0
Q ss_pred HHccC-CCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHH-----------HHhh----------hhh
Q psy6129 85 LTMSM-GGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGR-----------IYKG----------LAQ 139 (383)
Q Consensus 85 l~~~~-~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~-----------~l~g----------~~~ 139 (383)
+.+.. ..++.||||||||++++.+++.+ |..++....+.. -...+.+ .+.. ...
T Consensus 14 l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~-Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~ 92 (196)
T PF13604_consen 14 LTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNK-AAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELP 92 (196)
T ss_dssp HHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHH-HHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-T
T ss_pred HhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHH-HHHHHHHhhCcchhhHHHHHhcCCcccccccccCC
Confidence 44443 34577999999999999887666 555555543321 1111222 1111 034
Q ss_pred cCceEEecccccCChhhHHHH
Q psy6129 140 SGSWGCFDEFNRIELPVLSVA 160 (383)
Q Consensus 140 ~g~w~~~dein~l~~~~ls~l 160 (383)
...++++||..+++...+..+
T Consensus 93 ~~~vliVDEasmv~~~~~~~l 113 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSRQLARL 113 (196)
T ss_dssp STSEEEESSGGG-BHHHHHHH
T ss_pred cccEEEEecccccCHHHHHHH
Confidence 457899999999988876554
No 264
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.46 E-value=0.0019 Score=53.01 Aligned_cols=42 Identities=24% Similarity=0.205 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 74 TDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 74 t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
|.+.-..+...+..+.-.++.|+.|+|||++++.+++.+|..
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 444445555555555556789999999999999999999854
No 265
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.45 E-value=0.0013 Score=56.49 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=25.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
...+++|++|||||++++.||+.+|.+++
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~ 33 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFI 33 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 34567899999999999999999998765
No 266
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.12 Score=48.37 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC---------------c-EEEEeCCC---CCCHHHHHHH
Q psy6129 76 RCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK---------------Y-VVVFNCSD---QMDYRGLGRI 133 (383)
Q Consensus 76 r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~---------------~-~~~~~c~~---~~~~~~l~~~ 133 (383)
..|..+..++..+.-+ ++.||.|+||+.++..+|+.+-. | ++.+.-.. ....+.+..+
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l 83 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHH
Confidence 4566777788775543 47899999999999999997732 1 11111010 1233334333
Q ss_pred Hhhhhh-----cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcc
Q psy6129 134 YKGLAQ-----SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKEL 208 (383)
Q Consensus 134 l~g~~~-----~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~l 208 (383)
.+-+.. ...++++|+.+++..+.-..+ +.-+-+ -.++..|+..++. ...+
T Consensus 84 ~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaL-------LK~LEE--------------Pp~~~~fiL~~~~----~~~l 138 (290)
T PRK05917 84 KKQIWIHPYESPYKIYIIHEADRMTLDAISAF-------LKVLED--------------PPQHGVIILTSAK----PQRL 138 (290)
T ss_pred HHHHhhCccCCCceEEEEechhhcCHHHHHHH-------HHHhhc--------------CCCCeEEEEEeCC----hhhC
Confidence 332221 123456677776666654433 111111 0133444444431 3689
Q ss_pred hHHHHHhccccccCCC
Q psy6129 209 PENLKIQFRTVAMMVP 224 (383)
Q Consensus 209 p~~l~~~fr~v~~~~P 224 (383)
++.++||+..+.+..+
T Consensus 139 l~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 139 PPTIRSRSLSIHIPME 154 (290)
T ss_pred cHHHHhcceEEEccch
Confidence 9999999998888644
No 267
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0026 Score=53.36 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
.+.||||||||+.++.+|+.+|.+++.
T Consensus 4 tIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 4 TISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EeccCCCCChhHHHHHHHHHhCCceee
Confidence 467999999999999999999999753
No 268
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.011 Score=54.42 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=48.6
Q ss_pred HHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHH---------HhhhhhcCceEE
Q psy6129 78 YITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRI---------YKGLAQSGSWGC 145 (383)
Q Consensus 78 ~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~---------l~g~~~~g~w~~ 145 (383)
...+...+..+.+.++.||+|+|||.++-++|..+ |..+..++..+-+.- +..- +......-..++
T Consensus 95 ~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~--Lk~~~~~~~~~~~l~~~l~~~dlLI 172 (254)
T COG1484 95 LASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK--LKAAFDEGRLEEKLLRELKKVDLLI 172 (254)
T ss_pred HHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--HHHHHhcCchHHHHHHHhhcCCEEE
Confidence 34444455667778899999999999999988876 556666665443211 1111 111233456789
Q ss_pred ecccccCChhh
Q psy6129 146 FDEFNRIELPV 156 (383)
Q Consensus 146 ~dein~l~~~~ 156 (383)
+||+-..+...
T Consensus 173 iDDlG~~~~~~ 183 (254)
T COG1484 173 IDDIGYEPFSQ 183 (254)
T ss_pred EecccCccCCH
Confidence 99998655543
No 269
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.36 E-value=0.032 Score=52.81 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=42.0
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCH-H------HHHHHHhhhhhcCceEEecccccCC
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDY-R------GLGRIYKGLAQSGSWGCFDEFNRIE 153 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~-~------~l~~~l~g~~~~g~w~~~dein~l~ 153 (383)
..|..|.||+|||||.++.++|+.+ |..+..+++..-+.. . .+.+.+. ....-.++++||+-.-+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~-~l~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKID-AVKEAPVLMLDDIGAEQ 230 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHH-HhcCCCEEEEecCCCcc
Confidence 3466789999999999999999988 666766665421100 0 0111111 23456789999997544
No 270
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0018 Score=60.51 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL 130 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l 130 (383)
+..+..||+|+||||+++-||+..|-|++-+..+.-|....+
T Consensus 51 KNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYV 92 (444)
T COG1220 51 KNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYV 92 (444)
T ss_pred cceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccc
Confidence 344568999999999999999999999999988877654433
No 271
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.31 E-value=0.0019 Score=53.48 Aligned_cols=22 Identities=41% Similarity=0.813 Sum_probs=20.8
Q ss_pred CCcCCCCCCccHHHHHHHHHhC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg 113 (383)
+++||||+|||++++.+++.+|
T Consensus 3 i~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 3 ILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEESTTSSHHHHHHHHHHHST
T ss_pred EEECCCCCCHHHHHHHHHHHCC
Confidence 4689999999999999999999
No 272
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.29 E-value=0.013 Score=53.81 Aligned_cols=115 Identities=20% Similarity=0.327 Sum_probs=71.2
Q ss_pred hHHHHHHHH-HHHHccCCCCCcCCCCCCccHHHHHHHH------HhCCcEEEEeCCCCCCHHHHHHHH---hh-------
Q psy6129 74 TDRCYITLA-QALTMSMGGSPCGPAGTGKTETVKDMGK------TLAKYVVVFNCSDQMDYRGLGRIY---KG------- 136 (383)
Q Consensus 74 t~r~~~~l~-~al~~~~~~~l~Gp~GtGKT~~i~~la~------~lg~~~~~~~c~~~~~~~~l~~~l---~g------- 136 (383)
-.|..-.+. -|+.+..|.+|.||+|.||+-+++.+-. .+.-+++.+||..--.-..|+-++ +|
T Consensus 193 fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~ 272 (531)
T COG4650 193 FNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARE 272 (531)
T ss_pred HHHHHHHHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchh
Confidence 334333333 3677888899999999999998864332 344567899998754433444333 33
Q ss_pred ----h--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEee
Q psy6129 137 ----L--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITM 198 (383)
Q Consensus 137 ----~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~ 198 (383)
+ ...|..+++||+-.+..+-..++ +.++.+++ .+.+ |..-.+..+|++++-.
T Consensus 273 ~r~gllrsadggmlfldeigelgadeqaml-------lkaieekr-f~pf--gsdr~v~sdfqliagt 330 (531)
T COG4650 273 SREGLLRSADGGMLFLDEIGELGADEQAML-------LKAIEEKR-FYPF--GSDRQVSSDFQLIAGT 330 (531)
T ss_pred hhhhhhccCCCceEehHhhhhcCccHHHHH-------HHHHHhhc-cCCC--CCccccccchHHhhhh
Confidence 2 24588999999998877765544 45555553 3322 3333344667776543
No 273
>PHA01747 putative ATP-dependent protease
Probab=96.27 E-value=0.023 Score=54.16 Aligned_cols=59 Identities=22% Similarity=0.130 Sum_probs=38.8
Q ss_pred cCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH-H---HHHhhhhhcCceEEecccccCChhh
Q psy6129 94 CGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL-G---RIYKGLAQSGSWGCFDEFNRIELPV 156 (383)
Q Consensus 94 ~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l-~---~~l~g~~~~g~w~~~dein~l~~~~ 156 (383)
.||.|||||.+-+.+++..+.-+ +...++.+.| - +--.|+...-..++|||+....-+.
T Consensus 196 LgPRGTGKS~~f~eis~fsp~~i----SGG~~TvA~LFyN~~t~~~GLVg~~D~VaFDEVa~i~f~~ 258 (425)
T PHA01747 196 LSNRGTGKTTTFVILQELFNFRY----YTEPPTYANLVYDAKTNALGLVFLSNGLIFDEIQTWKDSN 258 (425)
T ss_pred ecCCCCChhhHHHHhhhcCCcee----eCCCCchHHheEecCCCceeEEeeccEEEEEccccccCCC
Confidence 49999999999999877554443 4455554432 1 1123555555568899999876433
No 274
>PRK04040 adenylate kinase; Provisional
Probab=96.24 E-value=0.012 Score=51.45 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=40.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHh--CCcEEEEeCCCCCCHHHHHHHHhh-hhhcCceEEecccccCChhhHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL--AKYVVVFNCSDQMDYRGLGRIYKG-LAQSGSWGCFDEFNRIELPVLSVAAQ 162 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l--g~~~~~~~c~~~~~~~~l~~~l~g-~~~~g~w~~~dein~l~~~~ls~l~~ 162 (383)
+.++|+||+|||++++.+++.+ +..+ +++++ ++.- +...|.|.--|++..++.+....+..
T Consensus 5 i~v~G~pG~GKtt~~~~l~~~l~~~~~~--~~~g~---------~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~ 68 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALEKLKEDYKI--VNFGD---------VMLEVAKEEGLVEHRDEMRKLPPEEQKELQR 68 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCeE--Eecch---------HHHHHHHHcCCCCCHHHHhhCChhhhHHHHH
Confidence 4578999999999999999999 4443 33322 2222 34556666668888777765444433
No 275
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.20 E-value=0.0027 Score=52.80 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=25.2
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEe
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFN 120 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~ 120 (383)
++.|++|||||++++.||+.+|.+++...
T Consensus 3 ~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 3 AIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 46899999999999999999999875443
No 276
>PRK13947 shikimate kinase; Provisional
Probab=96.20 E-value=0.0026 Score=54.57 Aligned_cols=28 Identities=32% Similarity=0.203 Sum_probs=25.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
.++.|++|||||++++.||+.+|.+++.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 5678999999999999999999998643
No 277
>KOG3347|consensus
Probab=96.19 E-value=0.0032 Score=52.04 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=24.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.+++|.||||||++.+.+|.++|.+++
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~~~i 36 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGLEYI 36 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCCceE
Confidence 446799999999999999999998864
No 278
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.16 E-value=0.0071 Score=57.08 Aligned_cols=119 Identities=25% Similarity=0.284 Sum_probs=68.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcE-EEEeCCCCCCH--HHHH----------HHHhhhhhcCceEEecccccCChh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYV-VVFNCSDQMDY--RGLG----------RIYKGLAQSGSWGCFDEFNRIELP 155 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~-~~~~c~~~~~~--~~l~----------~~l~g~~~~g~w~~~dein~l~~~ 155 (383)
+|..+.|+-|.|||.+.-.+-..+..+- ...+++.-+-. +.+. -+.+.++..-..+|||||.--+..
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~VtDI~ 145 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVTDIA 145 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeecChH
Confidence 4566889999999999988887775432 33343332211 0111 122334566678899999833222
Q ss_pred hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC--C--CC---CCCcc-h--HHHHHhccccccCCC-
Q psy6129 156 VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP--G--YA---GRKEL-P--ENLKIQFRTVAMMVP- 224 (383)
Q Consensus 156 ~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np--~--~~---g~~~l-p--~~l~~~fr~v~~~~P- 224 (383)
- +-.+..++.++..+ ++.+|+|+|. + |. .|..+ | +-++++|-+++++-|
T Consensus 146 D----AMiL~rL~~~Lf~~----------------GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~~ 205 (367)
T COG1485 146 D----AMILGRLLEALFAR----------------GVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGPV 205 (367)
T ss_pred H----HHHHHHHHHHHHHC----------------CcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCCc
Confidence 1 11222334444442 3568999994 2 22 12222 2 356788889999888
Q ss_pred CHH
Q psy6129 225 DRQ 227 (383)
Q Consensus 225 d~~ 227 (383)
|+.
T Consensus 206 DYR 208 (367)
T COG1485 206 DYR 208 (367)
T ss_pred ccc
Confidence 654
No 279
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.15 E-value=0.004 Score=56.66 Aligned_cols=34 Identities=32% Similarity=0.512 Sum_probs=25.4
Q ss_pred CcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC
Q psy6129 93 PCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD 126 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~ 126 (383)
.+||||+|||+.++.+.+.+ |++++++|-++..+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVE 37 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhc
Confidence 36999999999999998877 67899999998776
No 280
>PHA00729 NTP-binding motif containing protein
Probab=96.10 E-value=0.0041 Score=55.75 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=25.5
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHHhhcCCC
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFL 240 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~ 240 (383)
..+++.++++++.+-+..++.+.+.+. |...|+.
T Consensus 109 f~L~~aLrSR~~l~il~~ls~edL~~~-Lr~Rg~~ 142 (226)
T PHA00729 109 YKIYALIRTRVSAVIFTTPSPEDLAFY-LREKGWY 142 (226)
T ss_pred HHHHHHHHhhCcEEEEecCCHHHHHHH-HHhCCCc
Confidence 468888998998888888888877664 3456664
No 281
>KOG0732|consensus
Probab=96.10 E-value=0.0072 Score=64.69 Aligned_cols=127 Identities=16% Similarity=0.200 Sum_probs=67.4
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH-----------HHHHhhh-hhcCceEEecccccCCh-
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL-----------GRIYKGL-AQSGSWGCFDEFNRIEL- 154 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l-----------~~~l~g~-~~~g~w~~~dein~l~~- 154 (383)
-.|+++.||||||||..++++|..+.+-.-.+.+.-.=..+.+ .-++.-+ ...-..++||||+=+.+
T Consensus 299 PrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapv 378 (1080)
T KOG0732|consen 299 PRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPV 378 (1080)
T ss_pred CcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEecccccccccc
Confidence 4578899999999999999999988543322222221112222 2223333 23467889999993322
Q ss_pred ------hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCC
Q psy6129 155 ------PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPD 225 (383)
Q Consensus 155 ------~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd 225 (383)
.+-+.+...+..++..+.. .| ...++++.|-. ..+.+.+++ +| |.+++..||
T Consensus 379 rSskqEqih~SIvSTLLaLmdGlds--------Rg-------qVvvigATnRp----da~dpaLRRPgrfdref~f~lp~ 439 (1080)
T KOG0732|consen 379 RSSKQEQIHASIVSTLLALMDGLDS--------RG-------QVVVIGATNRP----DAIDPALRRPGRFDREFYFPLPD 439 (1080)
T ss_pred ccchHHHhhhhHHHHHHHhccCCCC--------CC-------ceEEEcccCCc----cccchhhcCCcccceeEeeeCCc
Confidence 1222222222222222211 12 23455666632 245555543 23 678888898
Q ss_pred HHHHHHHH
Q psy6129 226 RQIIIRVK 233 (383)
Q Consensus 226 ~~~i~ei~ 233 (383)
...-.+|+
T Consensus 440 ~~ar~~Il 447 (1080)
T KOG0732|consen 440 VDARAKIL 447 (1080)
T ss_pred hHHHHHHH
Confidence 66544443
No 282
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.10 E-value=0.0035 Score=53.37 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.4
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
+++||+|+|||++++.+++.+|.++
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l~~~~ 26 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRLGAKF 26 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4789999999999999999998654
No 283
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.10 E-value=0.0034 Score=52.69 Aligned_cols=27 Identities=30% Similarity=0.240 Sum_probs=24.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.+++|++|+|||++++.+|+.+|.+++
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 357899999999999999999998865
No 284
>KOG1970|consensus
Probab=96.08 E-value=0.0034 Score=62.23 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=26.1
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEe
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFN 120 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~ 120 (383)
+|+||+|+|||+|++.||+.+|..+..+.
T Consensus 114 LltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 114 LLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred EEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 46899999999999999999999887664
No 285
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.04 E-value=0.021 Score=49.14 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRI 133 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~ 133 (383)
.++.||+|||||+.+..++..+|.+++.+.-....+.+.-.|+
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri 46 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARI 46 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHH
Confidence 3578999999999999999999988766665555666544444
No 286
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.02 E-value=0.022 Score=58.94 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=23.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.+|.||+|+|||++++.+|+.+|..+
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 45789999999999999999998764
No 287
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.01 E-value=0.0036 Score=50.63 Aligned_cols=41 Identities=29% Similarity=0.203 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 75 DRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
.+.-..+...+..+.-.+|.|+-|+|||+++|.+++.+|..
T Consensus 2 ~~la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 2 IRLAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34445566666666667789999999999999999999875
No 288
>PRK03839 putative kinase; Provisional
Probab=96.01 E-value=0.0034 Score=54.44 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=24.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
.++.|+||+|||++++.||+.+|.+++.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id 30 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVD 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 4578999999999999999999988643
No 289
>PRK00625 shikimate kinase; Provisional
Probab=95.96 E-value=0.0037 Score=53.96 Aligned_cols=28 Identities=29% Similarity=0.202 Sum_probs=25.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
.+++|.+|+|||++.+.+|+.+|.+++.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id 30 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFD 30 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 5689999999999999999999988644
No 290
>KOG0741|consensus
Probab=95.93 E-value=0.016 Score=57.38 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHccCC----CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC---CH----HHHHHHHhhhhhcC-
Q psy6129 74 TDRCYITLAQALTMSMG----GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM---DY----RGLGRIYKGLAQSG- 141 (383)
Q Consensus 74 t~r~~~~l~~al~~~~~----~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~---~~----~~l~~~l~g~~~~g- 141 (383)
.++..+.+.+.=.+... +++.||+|+|||.++..+|...+-|++.+-..+.+ +. ..+.+++..+.++.
T Consensus 520 l~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 520 LDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred HhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc
Confidence 34444444443333333 34789999999999999999999998776433322 22 23667777777665
Q ss_pred ceEEecccccC
Q psy6129 142 SWGCFDEFNRI 152 (383)
Q Consensus 142 ~w~~~dein~l 152 (383)
+.+++|++.++
T Consensus 600 siivvDdiErL 610 (744)
T KOG0741|consen 600 SIIVVDDIERL 610 (744)
T ss_pred eEEEEcchhhh
Confidence 67788999876
No 291
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.91 E-value=0.0037 Score=55.97 Aligned_cols=32 Identities=34% Similarity=0.374 Sum_probs=21.1
Q ss_pred HHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 81 LAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 81 l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+..++....-.++.||||||||+++..++..+
T Consensus 10 i~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 10 IQSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 33444333335678999999999998877766
No 292
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.0033 Score=53.38 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVF 119 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~ 119 (383)
.+++|.||+|||+..+.|+ .+|..++..
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l 30 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIEL 30 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeH
Confidence 4678999999999999999 999887543
No 293
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.88 E-value=0.0084 Score=54.96 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=37.2
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCC---C-----CHHH-H----HHHHhhhhhcCceEEecccc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQ---M-----DYRG-L----GRIYKGLAQSGSWGCFDEFN 150 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~---~-----~~~~-l----~~~l~g~~~~g~w~~~dein 150 (383)
+++|+||+|||+.++.+++.+ |..++.++-+.- + ..+. + .+.+..++..|.|+++|..|
T Consensus 3 vl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~ 77 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTN 77 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 578999999999999999988 455555532211 0 0000 1 12233455677888888765
No 294
>KOG0990|consensus
Probab=95.84 E-value=0.068 Score=49.94 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCc------EEEEeCCCCCCHHHHHHH---Hhhhh-----hc--C-ceEEecccccCCh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKY------VVVFNCSDQMDYRGLGRI---YKGLA-----QS--G-SWGCFDEFNRIEL 154 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~------~~~~~c~~~~~~~~l~~~---l~g~~-----~~--g-~w~~~dein~l~~ 154 (383)
+++||||||||.++-+.|+.+-.+ +...|.|+.-+..-+.+- +.-+. .+ + ..+.+||.|.+..
T Consensus 66 L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~ 145 (360)
T KOG0990|consen 66 LFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR 145 (360)
T ss_pred cccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH
Confidence 468999999999999999987553 123355544443332221 11111 11 2 3467899885555
Q ss_pred hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCC
Q psy6129 155 PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPD 225 (383)
Q Consensus 155 ~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd 225 (383)
+....+.+ ..+ . ...+++|.+-+|+- +.+-+.++++|..+.+..-+
T Consensus 146 ~AQnALRR--------vie---k----------~t~n~rF~ii~n~~----~ki~pa~qsRctrfrf~pl~ 191 (360)
T KOG0990|consen 146 DAQNALRR--------VIE---K----------YTANTRFATISNPP----QKIHPAQQSRCTRFRFAPLT 191 (360)
T ss_pred HHHHHHHH--------HHH---H----------hccceEEEEeccCh----hhcCchhhcccccCCCCCCC
Confidence 54333221 111 1 12456666667753 45666778777666654444
No 295
>PRK06217 hypothetical protein; Validated
Probab=95.80 E-value=0.005 Score=53.64 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=24.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
+++.|++|+|||++++.||+.+|.+++
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 467899999999999999999998864
No 296
>PRK13949 shikimate kinase; Provisional
Probab=95.77 E-value=0.0052 Score=52.89 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=25.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
..+++||+|+|||++.+.||+.+|.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 35689999999999999999999987543
No 297
>KOG1533|consensus
Probab=95.73 E-value=0.0096 Score=52.99 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=30.7
Q ss_pred CCCCCcCCCCCCccHHHH---HHHHHhCCcEEEEeCCCCCC
Q psy6129 89 MGGSPCGPAGTGKTETVK---DMGKTLAKYVVVFNCSDQMD 126 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~---~la~~lg~~~~~~~c~~~~~ 126 (383)
++..++||||+|||+-.. ++-+.+||++.++|-++.-+
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd 43 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAND 43 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCccc
Confidence 456789999999999874 56677899999998887543
No 298
>PRK06762 hypothetical protein; Provisional
Probab=95.71 E-value=0.0074 Score=51.52 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=25.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEe
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFN 120 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~ 120 (383)
..++|++|+|||+.++.|++.+|..++.++
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 357899999999999999999976666664
No 299
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.69 E-value=0.0065 Score=52.73 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=24.0
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCS 122 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~ 122 (383)
++.||||||||+.++.||+.+|.. .++.+
T Consensus 3 ~i~G~pGsGKst~a~~la~~~~~~--~is~~ 31 (183)
T TIGR01359 3 FVLGGPGSGKGTQCAKIVENFGFT--HLSAG 31 (183)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCe--EEECC
Confidence 578999999999999999999855 34443
No 300
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.042 Score=53.58 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=27.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHh-------CCcEEEEeCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL-------AKYVVVFNCSDQ 124 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l-------g~~~~~~~c~~~ 124 (383)
.+++||+|+|||+|+..+|..+ |..+..++++..
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 3478999999999999999865 466777777753
No 301
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.67 E-value=0.011 Score=42.54 Aligned_cols=28 Identities=32% Similarity=0.586 Sum_probs=22.2
Q ss_pred CCcCCCCCCccHHHHHHHHHh-CCcEEEE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL-AKYVVVF 119 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l-g~~~~~~ 119 (383)
.+.|++|+|||++++.+++.+ +..+..+
T Consensus 3 ~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 3 AITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 467999999999999999997 3444433
No 302
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.66 E-value=0.013 Score=55.29 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 77 CYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 77 ~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
....+..++..+...+++||+|+|||++++++...+.
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3445666777777778899999999999999998873
No 303
>PRK13946 shikimate kinase; Provisional
Probab=95.66 E-value=0.0065 Score=52.99 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=26.5
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.....++|++|+|||++.+.||+.+|.+++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i 39 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFL 39 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence 455678999999999999999999999964
No 304
>PRK06696 uridine kinase; Validated
Probab=95.64 E-value=0.0078 Score=54.23 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=29.8
Q ss_pred CcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH
Q psy6129 93 PCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR 128 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~ 128 (383)
+.|++|+|||++++.|++.+ |.+++.++.+.-..+.
T Consensus 27 I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 27 IDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 57999999999999999999 7778777777655444
No 305
>PRK14530 adenylate kinase; Provisional
Probab=95.60 E-value=0.0065 Score=54.38 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.5
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
-.++.||||+|||++++.||+.+|.+++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3567899999999999999999997654
No 306
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.59 E-value=0.0088 Score=52.25 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 75 DRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
......+..++..+...++.||+|+|||++++.++..+.
T Consensus 12 ~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 12 PLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 344555666777777788999999999999999988763
No 307
>KOG0479|consensus
Probab=95.59 E-value=0.016 Score=57.94 Aligned_cols=122 Identities=17% Similarity=0.226 Sum_probs=75.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEE-eCCCCC--------CHHH-HHHHHhhh--hhcCceEEecccccCChhhHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVF-NCSDQM--------DYRG-LGRIYKGL--AQSGSWGCFDEFNRIELPVLS 158 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~-~c~~~~--------~~~~-l~~~l~g~--~~~g~w~~~dein~l~~~~ls 158 (383)
.+++|.|.+.|+.+++.+-+...+-+-+- -.|++. |.+. =.|+-.|+ ....+.+|+|||++++.--.-
T Consensus 337 iLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRv 416 (818)
T KOG0479|consen 337 ILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRV 416 (818)
T ss_pred EEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEccCceEEehhcccccchhHH
Confidence 35789999999999998777654432111 122211 1111 13444565 345678899999988765432
Q ss_pred HHHHHHHHHHHHHHhcCceeEe-cCCcEEEecCCeeEEEeeCCCCCC---------CCcchHHHHHhcccccc
Q psy6129 159 VAAQQVAVVLAAKKEKKKSFVF-TDGDSIEMCPEFGIFITMNPGYAG---------RKELPENLKIQFRTVAM 221 (383)
Q Consensus 159 ~l~~~~~~i~~~~~~~~~~~~~-~~~~~i~~~~~~~if~T~np~~~g---------~~~lp~~l~~~fr~v~~ 221 (383)
++ .+++ +.+ .+.+ ..|-.-+++..|.++++.||-|+. .-.||++|.++|--+.+
T Consensus 417 AI----HEVM----EQq-tVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv 480 (818)
T KOG0479|consen 417 AI----HEVM----EQQ-TVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFV 480 (818)
T ss_pred HH----HHHH----hcc-eEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEE
Confidence 22 2222 332 3332 345555778899999999996642 23589999999976554
No 308
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.58 E-value=0.0053 Score=53.06 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=24.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVF 119 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~ 119 (383)
.++.|++|+|||++++.|++.++.+++.+
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 45789999999999999999998776433
No 309
>PRK14532 adenylate kinase; Provisional
Probab=95.57 E-value=0.0069 Score=52.88 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=23.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.||||+|||+.++.||+.+|..++
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~i 29 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQL 29 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 467899999999999999999997653
No 310
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.57 E-value=0.026 Score=52.75 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=27.4
Q ss_pred CCcCCCCCCccHHHHHHHHHh----C-CcEEEEeCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL----A-KYVVVFNCSDQ 124 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l----g-~~~~~~~c~~~ 124 (383)
+++||+|+|||+|+..||..+ | ..+..+.++..
T Consensus 198 ~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 198 ALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 378999999999999998766 5 67888888764
No 311
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.56 E-value=0.015 Score=55.23 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=29.3
Q ss_pred HHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 78 YITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 78 ~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
...+..++..+...+++|++|+|||+++++|+..+
T Consensus 134 ~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 134 ASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34566777877777889999999999999999876
No 312
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.54 E-value=0.011 Score=53.27 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=39.9
Q ss_pred CCcCCCCCCccHHHHHHHHHh-----CCc-EEEEeCCC----CCCHHHHHHHHhhhhh--cCceEEecccccCChhhHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL-----AKY-VVVFNCSD----QMDYRGLGRIYKGLAQ--SGSWGCFDEFNRIELPVLSV 159 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l-----g~~-~~~~~c~~----~~~~~~l~~~l~g~~~--~g~w~~~dein~l~~~~ls~ 159 (383)
.+.|+||+|||+.++.+.... .++ ........ ......+..+..+... .+.++++||+.++++..+..
T Consensus 2 vv~G~pGsGKSt~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g~l~~ 81 (234)
T PF01443_consen 2 VVHGVPGSGKSTLIKKLLKDRLVVTVISPTIELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPGYLLL 81 (234)
T ss_pred EEEcCCCCCHHHHHHHHHHhccccccccccceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChHHHHH
Confidence 357999999999999998884 111 11111111 0000011122233333 48899999999999876554
No 313
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.51 E-value=0.0081 Score=52.20 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.2
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
++.||+|+|||++++.+|+.+|...
T Consensus 7 ~i~G~~GsGKsTl~~~l~~~~g~~~ 31 (188)
T TIGR01360 7 FIVGGPGSGKGTQCEKIVEKYGFTH 31 (188)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcE
Confidence 4689999999999999999998654
No 314
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.50 E-value=0.0077 Score=50.44 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=24.9
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQ 124 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~ 124 (383)
++.|++|+|||++++.+++.+|..+ ++.+.-
T Consensus 3 ~l~G~~GsGKST~a~~l~~~~~~~~--i~~D~~ 33 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAERLGAPF--IDGDDL 33 (150)
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCEE--EeCccc
Confidence 4689999999999999999988654 454443
No 315
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.49 E-value=0.0084 Score=52.86 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=22.9
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVF 119 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~ 119 (383)
++.||+|||||.++-.+|+.+|-|+++.
T Consensus 5 ~i~GpT~tGKt~~ai~lA~~~g~pvI~~ 32 (233)
T PF01745_consen 5 LIVGPTGTGKTALAIALAQKTGAPVISL 32 (233)
T ss_dssp EEE-STTSSHHHHHHHHHHHH--EEEEE
T ss_pred EEECCCCCChhHHHHHHHHHhCCCEEEe
Confidence 4689999999999999999999998866
No 316
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.48 E-value=0.0086 Score=51.39 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=25.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+++|++|+|||++++.||+.+|.+++
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~ 31 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFV 31 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3567899999999999999999999875
No 317
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.47 E-value=0.0062 Score=52.53 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
....++||+|+|||++++.+|+.+|.+++
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~v 33 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 34668999999999999999999998854
No 318
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.46 E-value=0.0058 Score=52.78 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=25.3
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCc---EEEEeCCCC
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKY---VVVFNCSDQ 124 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~---~~~~~c~~~ 124 (383)
...+++||+|+|||++++.+...+... ++.++|+..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 334578999999999999888777544 677777766
No 319
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.46 E-value=0.0048 Score=52.55 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=19.2
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++|++|||||++++.|++. |.+++
T Consensus 3 ~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 3 VITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 57899999999999999999 76643
No 320
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.45 E-value=0.012 Score=50.55 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.1
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQ 124 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~ 124 (383)
+++||+|+|||+++..+|..+ |..+..++|+..
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 468999999999999998876 677888898864
No 321
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.44 E-value=0.0079 Score=51.40 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=25.8
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
....|+|+.|+|||++-+.||+.|+.+++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 34578999999999999999999999964
No 322
>PRK14531 adenylate kinase; Provisional
Probab=95.41 E-value=0.0089 Score=52.06 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=23.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.++.||||+|||+..+.+|+.+|.+.
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~g~~~ 30 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAHGLRH 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 56789999999999999999999774
No 323
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.41 E-value=0.036 Score=53.71 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=26.0
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh----C-CcEEEEeCCCC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL----A-KYVVVFNCSDQ 124 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l----g-~~~~~~~c~~~ 124 (383)
..+++||+|+|||+|+..||..+ | ..+..+.++..
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 34578999999999999998753 4 35666666553
No 324
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.40 E-value=0.0084 Score=52.43 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.||||+|||++++.||+.+|.+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i 28 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI 28 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 357899999999999999999987653
No 325
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.38 E-value=0.0054 Score=49.53 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.6
Q ss_pred CCcCCCCCCccHHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.|++|||||++++.|++.+
T Consensus 2 ~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998
No 326
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.30 E-value=0.87 Score=42.92 Aligned_cols=134 Identities=11% Similarity=0.057 Sum_probs=83.3
Q ss_pred HHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHh--------C---Cc--EEEEeC-CCCCCHHHHHHHHhhhh---
Q psy6129 79 ITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTL--------A---KY--VVVFNC-SDQMDYRGLGRIYKGLA--- 138 (383)
Q Consensus 79 ~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~l--------g---~~--~~~~~c-~~~~~~~~l~~~l~g~~--- 138 (383)
..+-.++..+... +++|+.|.||+++++.+|+.+ . .| +..++- ......+++..+..-+.
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~ 85 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSS 85 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCC
Confidence 3445566554332 378999999999999999987 1 22 233431 12345556666655431
Q ss_pred ---hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEE-eeCCCCCCCCcchHHHHH
Q psy6129 139 ---QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFI-TMNPGYAGRKELPENLKI 214 (383)
Q Consensus 139 ---~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~-T~np~~~g~~~lp~~l~~ 214 (383)
.....+++|+.+++.......+ +.-+.+ ..+++.+++ |.|| ..+.+.+++
T Consensus 86 ~~~~~~KvvII~~~e~m~~~a~NaL-------LK~LEE--------------Pp~~t~~il~~~~~-----~kll~TI~S 139 (299)
T PRK07132 86 FVQSQKKILIIKNIEKTSNSLLNAL-------LKTIEE--------------PPKDTYFLLTTKNI-----NKVLPTIVS 139 (299)
T ss_pred cccCCceEEEEecccccCHHHHHHH-------HHHhhC--------------CCCCeEEEEEeCCh-----HhChHHHHh
Confidence 1335677899888776654433 221111 113344444 4444 588889999
Q ss_pred hccccccCCCCHHHHHHHHHhhcCC
Q psy6129 215 QFRTVAMMVPDRQIIIRVKLASCGF 239 (383)
Q Consensus 215 ~fr~v~~~~Pd~~~i~ei~l~~~gf 239 (383)
++..+.+..|+.+.+.+.+.. .|.
T Consensus 140 Rc~~~~f~~l~~~~l~~~l~~-~~~ 163 (299)
T PRK07132 140 RCQVFNVKEPDQQKILAKLLS-KNK 163 (299)
T ss_pred CeEEEECCCCCHHHHHHHHHH-cCC
Confidence 999999999998888766543 354
No 327
>PRK06547 hypothetical protein; Provisional
Probab=95.25 E-value=0.0095 Score=51.38 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.5
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.+.|++|+|||++++.+++.+|.+++
T Consensus 19 ~i~G~~GsGKTt~a~~l~~~~~~~~~ 44 (172)
T PRK06547 19 LIDGRSGSGKTTLAGALAARTGFQLV 44 (172)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCee
Confidence 35699999999999999999887654
No 328
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.24 E-value=0.089 Score=47.46 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.||+|+|||++++.+|+.+|.+++
T Consensus 7 i~i~g~~gsGksti~~~la~~~~~~~~ 33 (225)
T PRK00023 7 IAIDGPAGSGKGTVAKILAKKLGFHYL 33 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 457899999999999999999997653
No 329
>PRK04182 cytidylate kinase; Provisional
Probab=95.24 E-value=0.0098 Score=51.23 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.|++|+|||++++.||+.+|.+++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~i 29 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHV 29 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEe
Confidence 457899999999999999999998754
No 330
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.23 E-value=0.0086 Score=52.28 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
...|+||+|+|||++++.|+..++.+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCe
Confidence 45689999999999999999988754
No 331
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.22 E-value=0.012 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.9
Q ss_pred CcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 93 PCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
+.||||+|||+.++.+|+.+|...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~i 25 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHI 25 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCccee
Confidence 4799999999999999999986643
No 332
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.22 E-value=0.01 Score=50.74 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
+.+.|++|+|||++++.+|+.+|.+++
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~ 29 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLI 29 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 357899999999999999999998853
No 333
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.20 E-value=0.013 Score=49.16 Aligned_cols=29 Identities=24% Similarity=0.435 Sum_probs=24.5
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEe
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFN 120 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~ 120 (383)
+++|++|+|||++++.++..+ |..++.++
T Consensus 3 ~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 578999999999999999998 66666554
No 334
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.012 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.++.||||+|||+.++.||+.+|.+-
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 46789999999999999999988773
No 335
>PRK02496 adk adenylate kinase; Provisional
Probab=95.11 E-value=0.014 Score=50.83 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.||||+|||++++.+|+.+|.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 457899999999999999999987643
No 336
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.07 E-value=0.013 Score=51.63 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=24.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~ 123 (383)
.+++||+|+|||+|+--||..+ |+.+..++++.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 3579999999999998888655 56666666654
No 337
>PRK10646 ADP-binding protein; Provisional
Probab=95.06 E-value=0.015 Score=48.86 Aligned_cols=42 Identities=21% Similarity=0.075 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 74 TDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 74 t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
|.+.-..+...+..+.-.+|.|+=|+|||+++|.+++.+|..
T Consensus 14 t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 14 TLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred HHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 444445555555555556789999999999999999999963
No 338
>PRK08233 hypothetical protein; Provisional
Probab=95.06 E-value=0.014 Score=50.38 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=24.0
Q ss_pred CCcCCCCCCccHHHHHHHHHhC-CcEEEEeCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA-KYVVVFNCS 122 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg-~~~~~~~c~ 122 (383)
.+.|++|+|||++++.|+..++ ..++.+++.
T Consensus 7 ~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 7 TIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred EEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 4679999999999999999997 334444443
No 339
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.05 E-value=0.058 Score=47.61 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=47.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceE-EecccccCChhhHHHHHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWG-CFDEFNRIELPVLSVAAQQVAVVLA 169 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~-~~dein~l~~~~ls~l~~~~~~i~~ 169 (383)
.+|+|+.|+|||+.++.|+.. ++.=+ ....+-.+.... ..|.|+ .+||++.+.....+.+ .
T Consensus 55 lvl~G~QG~GKStf~~~L~~~----~~~d~-~~~~~~kd~~~~-----l~~~~iveldEl~~~~k~~~~~l--------K 116 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPE----YFSDS-INDFDDKDFLEQ-----LQGKWIVELDELDGLSKKDVEAL--------K 116 (198)
T ss_pred eeEecCCcccHHHHHHHHhHH----hccCc-cccCCCcHHHHH-----HHHhHheeHHHHhhcchhhHHHH--------H
Confidence 347899999999999998544 21111 111221222211 234454 5799887664433322 2
Q ss_pred HHHhcCc-eeEec-CCcEEEecCCeeEEEeeCC
Q psy6129 170 AKKEKKK-SFVFT-DGDSIEMCPEFGIFITMNP 200 (383)
Q Consensus 170 ~~~~~~~-~~~~~-~~~~i~~~~~~~if~T~np 200 (383)
++..+.. .+... .......+..+.|++|.|.
T Consensus 117 ~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 117 SFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred HHhcccceeeecCCcCcceeeceeEEEEeccCC
Confidence 2222221 11111 2234455566788899996
No 340
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.04 E-value=0.014 Score=50.70 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=27.6
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQM 125 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~ 125 (383)
.+.|++|+|||++++.+++.+ |.++..++.+.-.
T Consensus 3 ~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 3 GIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 467999999999999999998 4677777666543
No 341
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.03 E-value=0.018 Score=51.28 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC-CcEEEEeCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA-KYVVVFNCSDQ 124 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg-~~~~~~~c~~~ 124 (383)
..+.||+|+|||++++.|++.++ ..+..++.+.-
T Consensus 9 I~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 34789999999999999999984 44566666543
No 342
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.02 E-value=0.087 Score=49.18 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=43.0
Q ss_pred cceeechhhHHHHHHHHHHHHc----cCCC-CCcCCCCCCccHHHHHHHHHhC---------CcEEEEeCCCCCCHHH
Q psy6129 66 ERLVITPLTDRCYITLAQALTM----SMGG-SPCGPAGTGKTETVKDMGKTLA---------KYVVVFNCSDQMDYRG 129 (383)
Q Consensus 66 ~~lv~Tp~t~r~~~~l~~al~~----~~~~-~l~Gp~GtGKT~~i~~la~~lg---------~~~~~~~c~~~~~~~~ 129 (383)
++-|--|-..+....+...+.. ..++ +++|+++.|||++++.+++.-. .|++.+.+.+.-+...
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 3455556666666555555532 2333 4689999999999999997653 3677788777666554
No 343
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.99 E-value=0.015 Score=52.67 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=36.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH-----HHHHHHHhhhhhcCce
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY-----RGLGRIYKGLAQSGSW 143 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~-----~~l~~~l~g~~~~g~w 143 (383)
.++.||||+|||+.++.||+.+|.+. ++.++-... ..+++.++..+..|.|
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~--is~gdllr~~~~~~t~lg~~i~~~~~~G~l 64 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKH--INMGNILREEIKAKTTIGKEIQKVVTSGNL 64 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE--EECChHHHHHhhcCChHHHHHHHHHHcCCc
Confidence 56789999999999999999999775 444443321 1356666666677754
No 344
>PRK14528 adenylate kinase; Provisional
Probab=94.96 E-value=0.015 Score=50.77 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.||||+|||++++.+|+.+|.+.+
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~~~~i 30 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLSIPQI 30 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 457899999999999999999997754
No 345
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.92 E-value=0.072 Score=56.65 Aligned_cols=75 Identities=20% Similarity=0.148 Sum_probs=45.0
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCC----------CCCHHHHHHHHh----h--hhhcCceEE
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSD----------QMDYRGLGRIYK----G--LAQSGSWGC 145 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~----------~~~~~~l~~~l~----g--~~~~g~w~~ 145 (383)
+......++.|+||||||++++.+...+ |..+..+.-+. ......+.+.+. + ......+++
T Consensus 365 ~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llI 444 (744)
T TIGR02768 365 TGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLV 444 (744)
T ss_pred hcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEE
Confidence 3334455689999999999999877654 55554442111 111111222221 1 123567889
Q ss_pred ecccccCChhhHHH
Q psy6129 146 FDEFNRIELPVLSV 159 (383)
Q Consensus 146 ~dein~l~~~~ls~ 159 (383)
+||+.+++...+..
T Consensus 445 vDEasMv~~~~~~~ 458 (744)
T TIGR02768 445 IDEAGMVGSRQMAR 458 (744)
T ss_pred EECcccCCHHHHHH
Confidence 99999999876543
No 346
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.88 E-value=0.016 Score=51.65 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
.++.||||+|||+.++.||+.+|.+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 3578999999999999999999977543
No 347
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.86 E-value=0.023 Score=49.99 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=26.0
Q ss_pred CCcCCCCCCccHHHHHHHHHhC-CcEEEEeCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA-KYVVVFNCSD 123 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg-~~~~~~~c~~ 123 (383)
.+.||+|+|||++++.++..++ ..+.+++++.
T Consensus 3 gi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 3 GIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 4689999999999999999984 4466777664
No 348
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.82 E-value=0.014 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.1
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
++.|+||+|||+.+++||+.|....
T Consensus 5 IlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 5 ILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred EEecCCCCCchHHHHHHHHHHHHhh
Confidence 5789999999999999999997553
No 349
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.82 E-value=0.091 Score=47.43 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCcCCCCCCccHHHHHHHHHh---------CCcEEEEeCCCCCCHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---------AKYVVVFNCSDQMDYRGLGRIYK 135 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---------g~~~~~~~c~~~~~~~~l~~~l~ 135 (383)
.++||+|+|||+++.+++... +..++.+.+....+...+.++..
T Consensus 23 ~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~ 75 (235)
T cd01123 23 EIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAE 75 (235)
T ss_pred EEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHH
Confidence 478999999999999998553 25677788877777776766653
No 350
>PRK04296 thymidine kinase; Provisional
Probab=94.79 E-value=0.074 Score=46.60 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=23.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNC 121 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c 121 (383)
.+++||+|+|||+.+..++..+ |+.++.++-
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3568999999999887766554 677777743
No 351
>PRK06851 hypothetical protein; Provisional
Probab=94.75 E-value=0.042 Score=53.02 Aligned_cols=63 Identities=24% Similarity=0.311 Sum_probs=46.0
Q ss_pred cCCccceeechhhHHHHHHHHHHHHcc--CCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCC
Q psy6129 62 LGCTERLVITPLTDRCYITLAQALTMS--MGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQ 124 (383)
Q Consensus 62 ~g~~~~lv~Tp~t~r~~~~l~~al~~~--~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~ 124 (383)
.|....+..+-.|-+.+.+....+... .-.++.|+||||||++++.+++.+ |..+.+++|+..
T Consensus 186 ~g~~rh~F~ga~Tp~G~~s~~~~l~~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~d 253 (367)
T PRK06851 186 KGKVRHLFLGAITPKGAVDFVPSLTEGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFD 253 (367)
T ss_pred CCceeeeeccccCCCcHHhhHHhHhcccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 355555666666666766666555433 234578999999999999999877 888889999754
No 352
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.73 E-value=0.035 Score=53.10 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=30.1
Q ss_pred HHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 79 ITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 79 ~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
..+..|+..+...+++||+|+|||++++++...+..
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 445567778888889999999999999999988864
No 353
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.73 E-value=0.042 Score=54.50 Aligned_cols=37 Identities=30% Similarity=0.312 Sum_probs=28.4
Q ss_pred HHHHHHHHccCCCCC-cCCCCCCccHHHHHHHHHhCCc
Q psy6129 79 ITLAQALTMSMGGSP-CGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 79 ~~l~~al~~~~~~~l-~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
..+..+++..+|.+| .||+|+|||+|..++.+.+..+
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 445556677777765 5999999999999887777654
No 354
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.71 E-value=0.02 Score=54.98 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=30.0
Q ss_pred HHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 79 ITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 79 ~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
..+..++..+...++.||+|+|||+++++++..+..
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 445567777888889999999999999999987754
No 355
>PRK13948 shikimate kinase; Provisional
Probab=94.71 E-value=0.018 Score=50.20 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
....|+|.+|+|||++.+.||+.+|.+++
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~lg~~~i 39 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRALMLHFI 39 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 34568899999999999999999999875
No 356
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.64 E-value=0.022 Score=54.04 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=26.8
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.+....++|++|+|||++.+.||+.+|.+++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3444567899999999999999999999977
No 357
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.63 E-value=0.14 Score=50.83 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=27.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQ 124 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~ 124 (383)
.+++||+|+|||+++..||..+ |..+..++++..
T Consensus 224 i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 224 VALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 3578999999999999887644 467888888764
No 358
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.59 E-value=0.075 Score=51.58 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=33.9
Q ss_pred cEEEEEccceeeccccccCCccceeechhhHHHHHHHHHHHHccCC-CCCcCCCCCCccHHHHHHHHHh
Q psy6129 45 KTWINITDVTFTYQNEYLGCTERLVITPLTDRCYITLAQALTMSMG-GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 45 ~~~v~~~~~~~~YgyEy~g~~~~lv~Tp~t~r~~~~l~~al~~~~~-~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.++......+ .++-+|.++.+ ...+....+ .+++||+|+|||++++++.+.+
T Consensus 119 ~i~iR~~~~~~~-~l~~lgl~~~~-------------~~~l~~~~GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 119 SLTLRVIPSDIP-DLKQMGIEPDL-------------FNSLLPAAGLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred eEEEEeCCCcCC-CHHHcCCCHHH-------------HHHHHhcCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666655543 56666655421 111222233 4568999999999999998876
No 359
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.55 E-value=0.022 Score=50.93 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.||||+|||+.++.+|+.+|.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~i 29 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHI 29 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 457899999999999999999996643
No 360
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.50 E-value=0.018 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
.++.||+|+|||++++.|+..++.
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCc
Confidence 357899999999999999998763
No 361
>PLN02200 adenylate kinase family protein
Probab=94.50 E-value=0.025 Score=51.38 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.5
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
++.||||+|||+.++.+|+.+|.. .+++++
T Consensus 47 ~I~G~PGSGKsT~a~~La~~~g~~--his~gd 76 (234)
T PLN02200 47 FVLGGPGSGKGTQCEKIVETFGFK--HLSAGD 76 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCe--EEEccH
Confidence 468999999999999999999865 355443
No 362
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.49 E-value=0.18 Score=46.23 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=37.5
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhCCc---EEEEe--C-CCCCCHHHHHHHHhhhhhcCceEEeccccc
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLAKY---VVVFN--C-SDQMDYRGLGRIYKGLAQSGSWGCFDEFNR 151 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~---~~~~~--c-~~~~~~~~l~~~l~g~~~~g~w~~~dein~ 151 (383)
..+.-.++.||+|+|||++++.+++.+... ...+- . ....+...+.+-+ ...++..+.+.
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I------~~~~v~~~~~~ 79 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV------KGEVIASTFDE 79 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh------ccEEEEecCCC
Confidence 344556789999999999999999888652 22222 2 2235555554443 33455556664
No 363
>PRK07667 uridine kinase; Provisional
Probab=94.46 E-value=0.034 Score=48.91 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=27.9
Q ss_pred CCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQM 125 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~ 125 (383)
.+.|++|+|||++++.|++.++ .++.+++.+.-.
T Consensus 21 gI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 21 GIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYI 57 (193)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCccc
Confidence 4679999999999999999874 577788777643
No 364
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.45 E-value=0.029 Score=49.51 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
..+=||+|+||+++++.+|+.||.++
T Consensus 7 IAIDGPagsGKsTvak~lA~~Lg~~y 32 (222)
T COG0283 7 IAIDGPAGSGKSTVAKILAEKLGFHY 32 (222)
T ss_pred EEEeCCCccChHHHHHHHHHHhCCCe
Confidence 34669999999999999999999885
No 365
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.41 E-value=0.082 Score=48.63 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=37.1
Q ss_pred CCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFN 150 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein 150 (383)
.+.|++|+|||++++.+++.++ ..+.++..++-........--.+......+.-||.++
T Consensus 3 gItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~ 64 (277)
T cd02029 3 AVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFG 64 (277)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCC
Confidence 3679999999999999998885 3466777665544333332222333333445666654
No 366
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.39 E-value=0.03 Score=46.59 Aligned_cols=41 Identities=32% Similarity=0.220 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 74 TDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 74 t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
|.+.-..+..++..+.-++|.|+=|+|||+++|.+++.+|.
T Consensus 11 t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 11 TLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 34444455556656666678999999999999999999995
No 367
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.39 E-value=0.7 Score=42.39 Aligned_cols=24 Identities=4% Similarity=-0.198 Sum_probs=20.3
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
..-+++||.|+||..++.++|+.+
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~l 31 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSI 31 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHH
Confidence 345678999999999999999876
No 368
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.38 E-value=0.033 Score=52.99 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=28.3
Q ss_pred HHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 79 ITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 79 ~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
..+..++..+...+++|++|+|||+++++++...
T Consensus 139 ~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 139 EAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4556677777788889999999999999998763
No 369
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.38 E-value=0.031 Score=50.11 Aligned_cols=19 Identities=42% Similarity=0.455 Sum_probs=16.9
Q ss_pred CCCcCCCCCCccHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMG 109 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la 109 (383)
.+++|+||+|||++++.++
T Consensus 15 ~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 15 YLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred EEEECCCCCCHHHHHHhcC
Confidence 5679999999999999886
No 370
>KOG1514|consensus
Probab=94.37 E-value=3.5 Score=42.76 Aligned_cols=38 Identities=34% Similarity=0.293 Sum_probs=29.0
Q ss_pred CcCCCCCCccHHHHHHHHHhC-------C---cEEEEeCCCCCCHHHH
Q psy6129 93 PCGPAGTGKTETVKDMGKTLA-------K---YVVVFNCSDQMDYRGL 130 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~lg-------~---~~~~~~c~~~~~~~~l 130 (383)
+.|-||||||.|+..+-+.|- . .++.+|.-.-..+..+
T Consensus 427 IsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 427 ISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred EecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 579999999999998887553 2 3567788777776663
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.37 E-value=0.033 Score=51.81 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=27.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~ 123 (383)
..++||+|+|||+++..+|..+ |..+..+.|+.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3467999999999999999877 66788888875
No 372
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.064 Score=50.89 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=30.2
Q ss_pred CCCCChhHH---HHHHHHHHHHcCCccCHHHHHHHHHHHHHHh--ccccEEEECCCCCCC
Q psy6129 329 LEKTAYPAL---EGAIQEQCEAAGLIFHPPWVLKLIQLYETQR--VRHGIMTLGPTGAVT 383 (383)
Q Consensus 329 ~~~~~~~~~---~~~i~~~~~~~~l~~~~~~i~kv~~l~~~l~--~~~gviLvG~~GsGK 383 (383)
.|..+|.++ .+.|+|.=+-..|-+.. -.+|+.+. .+.||+|+||||+||
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~------PElF~~~GI~PPKGVLLYGPPGTGK 198 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKN------PELFEELGIDPPKGVLLYGPPGTGK 198 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccC------HHHHHHcCCCCCCceEeeCCCCCcH
Confidence 345566653 45555443333333221 15667765 478999999999998
No 373
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.34 E-value=0.027 Score=48.42 Aligned_cols=28 Identities=36% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVF 119 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~ 119 (383)
+++|++|+|||++++.+.+.+ |.++.-|
T Consensus 3 ~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf 33 (168)
T PF03266_consen 3 FITGPPGVGKTTLLKKVIEELKKKGLPVGGF 33 (168)
T ss_dssp EEES-TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHhhccCCccceE
Confidence 578999999999999999888 7776444
No 374
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.32 E-value=0.03 Score=55.13 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=29.2
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQM 125 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~ 125 (383)
.++|++|+|||+++..||..+ |..+..++|+..-
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 578999999999999999877 7788888887643
No 375
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=94.32 E-value=0.019 Score=54.59 Aligned_cols=134 Identities=14% Similarity=0.123 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHccCC----CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEeccc
Q psy6129 74 TDRCYITLAQALTMSMG----GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEF 149 (383)
Q Consensus 74 t~r~~~~l~~al~~~~~----~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dei 149 (383)
.+....-++..+-.+.| .++.||-.||||+++.++-..+|--...+||..+- .++=.|.+..-..++|+++
T Consensus 137 ~~~~i~~iL~~lv~N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~dk-----l~FELG~AiDQfmVvFEDV 211 (417)
T PF06431_consen 137 FDDVILEILKCLVENIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK-----LNFELGCAIDQFMVVFEDV 211 (417)
T ss_dssp HHHHHHHHHHHHHHTBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-TTT-----HHHHHCCCTT-SEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCChhh-----cchhhheeeceEEEEEEec
Confidence 34445555555655444 56789999999999999999999988899997652 2333466666777888776
Q ss_pred ccC---ChhhHHHH-HHHHHHHHHHHHhcCceeEecCCcEEEecCCee----EEEeeCCCCCCCCcchHHHHHhcccccc
Q psy6129 150 NRI---ELPVLSVA-AQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFG----IFITMNPGYAGRKELPENLKIQFRTVAM 221 (383)
Q Consensus 150 n~l---~~~~ls~l-~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~----if~T~np~~~g~~~lp~~l~~~fr~v~~ 221 (383)
--- ..++-+-. -..+..+.+-+ ++.-.+..+..+ .++..+ .++|||. ..||..++.||+.+..
T Consensus 212 KGq~~~~~~Lp~G~G~~NLDNLRD~L-DG~V~VNLErKH---~NK~sQiFPPgIvTmNe-----Y~iP~Tv~vRf~~~~~ 282 (417)
T PF06431_consen 212 KGQPSDNKDLPPGQGMNNLDNLRDYL-DGAVKVNLERKH---QNKRSQIFPPGIVTMNE-----YKIPQTVKVRFCKVLD 282 (417)
T ss_dssp --SSTTTTT----SHHHHHHTTHHHH-H-SS-EEEECSS---SEEEEE----EEEEESS------B--HHHHTTEEEEEE
T ss_pred CCCcCCCCCCCCCCCcccchhhhhhc-cCceeechhhhh---cccccccCCCceEeecc-----ccCCcceeeeeEeeEe
Confidence 311 11111110 01111122222 222222222111 111122 4689994 5899999999987654
No 376
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=94.31 E-value=0.017 Score=49.78 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=26.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCS 122 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~ 122 (383)
.+|-|++.+|||++++.|...+..|++.+..+
T Consensus 4 I~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D 35 (174)
T PF07931_consen 4 IILNGPSSSGKSSIARALQERLPEPWLHLSVD 35 (174)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHH
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcCCeEEEecC
Confidence 35779999999999999999999998888654
No 377
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.31 E-value=0.075 Score=47.13 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=32.7
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYK 135 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~ 135 (383)
.++||||+|||.++.+++... |..++.+.+.+ .+++.+.++..
T Consensus 16 ~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~ 61 (209)
T TIGR02237 16 QIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAE 61 (209)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHH
Confidence 368999999999998888644 66788888876 67766666543
No 378
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.29 E-value=0.036 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=19.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
..|+||+|+|||+|+.-||..+.
T Consensus 206 i~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 206 IALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 45899999999999988887665
No 379
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.29 E-value=0.034 Score=47.47 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.6
Q ss_pred cCCCCCCccHHHHHHHHHhCCcE
Q psy6129 94 CGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 94 ~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.||+|+|||++++.++..+|..+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~ 23 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAF 23 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeE
Confidence 49999999999999999998653
No 380
>KOG2543|consensus
Probab=94.28 E-value=0.1 Score=49.91 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=35.4
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL 130 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l 130 (383)
.+.|.+|||||.+++.+-+.+..+.+-+||-+-.++..+
T Consensus 34 ~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~l 72 (438)
T KOG2543|consen 34 HIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAIL 72 (438)
T ss_pred EEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHH
Confidence 578999999999999999999999999999998888764
No 381
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.24 E-value=0.14 Score=55.70 Aligned_cols=77 Identities=19% Similarity=0.085 Sum_probs=46.7
Q ss_pred HHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCC----------CCCHHHHHHHHhhh------hhcCceE
Q psy6129 84 ALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSD----------QMDYRGLGRIYKGL------AQSGSWG 144 (383)
Q Consensus 84 al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~----------~~~~~~l~~~l~g~------~~~g~w~ 144 (383)
++....-.++.|++|||||++++.+...+ |..++.+--+. ......+.+++.+. ...+.++
T Consensus 358 il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vl 437 (988)
T PRK13889 358 VTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVL 437 (988)
T ss_pred HhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEE
Confidence 33433345689999999999988766544 66655442211 12222344443321 3355688
Q ss_pred EecccccCChhhHHHH
Q psy6129 145 CFDEFNRIELPVLSVA 160 (383)
Q Consensus 145 ~~dein~l~~~~ls~l 160 (383)
++||.-+++...+..+
T Consensus 438 IVDEASMv~~~~m~~L 453 (988)
T PRK13889 438 VIDEAGMVGTRQLERV 453 (988)
T ss_pred EEECcccCCHHHHHHH
Confidence 9999999988865543
No 382
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=94.22 E-value=0.045 Score=57.07 Aligned_cols=45 Identities=29% Similarity=0.272 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEE
Q psy6129 74 TDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVV 118 (383)
Q Consensus 74 t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~ 118 (383)
...-...+..++......++.||||||||+++.++...+ |..+.+
T Consensus 159 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv 206 (637)
T TIGR00376 159 NESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLV 206 (637)
T ss_pred CHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 333344455566554556688999999999998776654 555433
No 383
>PF13479 AAA_24: AAA domain
Probab=94.20 E-value=0.052 Score=48.49 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=36.3
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC---------------HHHHHHHHhhh---hhcCceEEecccc
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD---------------YRGLGRIYKGL---AQSGSWGCFDEFN 150 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~---------------~~~l~~~l~g~---~~~g~w~~~dein 150 (383)
.-.+++||+|+|||+++..+ +++ +.+++..... ..++...+..+ ...-.++++|.+.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~-l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKP-LFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCe-EEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 34578999999999988776 555 4667766622 22223333222 2344688888776
Q ss_pred cC
Q psy6129 151 RI 152 (383)
Q Consensus 151 ~l 152 (383)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 44
No 384
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.17 E-value=0.082 Score=47.50 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=33.2
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYK 135 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~ 135 (383)
.+.||||+|||+++.++|... |..++.+.+. .++++.+.++..
T Consensus 27 ~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~~~~~ 72 (225)
T PRK09361 27 QIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAG 72 (225)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHh
Confidence 468999999999999988644 7788888886 666666665544
No 385
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.17 E-value=0.048 Score=49.01 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=26.5
Q ss_pred CCcCCCCCCccHHHHHHHHHhC-----CcEEEEeCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA-----KYVVVFNCSDQM 125 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg-----~~~~~~~c~~~~ 125 (383)
.+.||+|+|||++++.|+..+. ..+.+++.+.-.
T Consensus 3 gI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 3 GIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 4679999999999999999884 346666666543
No 386
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.15 E-value=0.019 Score=50.18 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
...++||+|+|||++++.|.+......+.+.|+.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TT 39 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEHPDFLFSISCTT 39 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCccccccCccC
Confidence 3457899999999999999887644344445543
No 387
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.14 E-value=0.29 Score=47.76 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=33.4
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCc-----EEEEeC-CCCCCHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKY-----VVVFNC-SDQMDYRGLGRIYK 135 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~-----~~~~~c-~~~~~~~~l~~~l~ 135 (383)
.+.-++++||+|+|||++++.+++.+... +++... ....+..++.+.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIl 221 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVK 221 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhh
Confidence 44456799999999999999999987543 333333 22356666666554
No 388
>PF14516 AAA_35: AAA-like domain
Probab=94.13 E-value=0.73 Score=44.13 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCC
Q psy6129 73 LTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSD 123 (383)
Q Consensus 73 ~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~ 123 (383)
.-++|+..+. +.+....+.||-.+|||+++..+.+.+ |..++.++|..
T Consensus 19 ~e~~~~~~i~---~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~ 69 (331)
T PF14516_consen 19 AEQECYQEIV---QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQ 69 (331)
T ss_pred HHHHHHHHHh---cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 4455544442 235666788999999999998776555 77788888886
No 389
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=94.09 E-value=0.091 Score=49.69 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=65.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHH-HHhhhhhcCc-eEEecccccCChhhHHHHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGR-IYKGLAQSGS-WGCFDEFNRIELPVLSVAAQQVAVVL 168 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~-~l~g~~~~g~-w~~~dein~l~~~~ls~l~~~~~~i~ 168 (383)
.++.|+.|+||+++++-+.+.+|........+ +....+.. -+.-+...|. +.+.||++.-..... +.+
T Consensus 79 ~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~--~~~~~~~~~~f~~a~l~gk~l~~~~E~~~~~~~~~--------~~l 148 (304)
T TIGR01613 79 FFLYGNGGNGKSTFQNLLSNLLGDYATTAVAS--LKMNEFQEHRFGLARLEGKRAVIGDEVQKGYRDDE--------STF 148 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHhChhhccCCcc--hhhhhccCCCchhhhhcCCEEEEecCCCCCccccH--------Hhh
Confidence 34789999999999999999999874322222 22222221 1111223344 566788763211111 112
Q ss_pred HHHHhcCceeEe--cCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcccccc
Q psy6129 169 AAKKEKKKSFVF--TDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAM 221 (383)
Q Consensus 169 ~~~~~~~~~~~~--~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~ 221 (383)
.++..+. .+.. .....+...+.+.+++++|.- ..-..-..++.+|+..|-+
T Consensus 149 K~lt~gd-~i~~~~k~k~~~~~~~~~~~i~~tN~~-P~~~~~~~a~~RR~~vi~f 201 (304)
T TIGR01613 149 KSLTGGD-TITARFKNKDPFEFTPKFTLVQSTNHL-PRIRGFDGGIKRRLRIIPF 201 (304)
T ss_pred hhhhcCC-eEEeecccCCcEEEEEeeEEEEEcCCC-CccCCCChhheeeEEEEec
Confidence 3333332 2221 122456677889999999941 1222345677778776654
No 390
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.08 E-value=0.025 Score=49.67 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.9
Q ss_pred CCcCCCCCCccHHHHHHHHHhCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
.+.||+|+|||++++.|+..|+.
T Consensus 3 gI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 3 GIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHhCc
Confidence 36799999999999999999984
No 391
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.07 E-value=0.062 Score=46.87 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=25.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCS 122 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~ 122 (383)
..+.|+.|+|||++++.|++.+ |..++.+.-.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3578999999999999999998 6666555443
No 392
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.07 E-value=0.036 Score=49.06 Aligned_cols=39 Identities=28% Similarity=0.201 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHH
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
+|.|.+-...+-. +....-..+.||+|||||.++-+.|.
T Consensus 3 ~p~~~~Q~~~~~a-l~~~~~v~~~G~AGTGKT~LA~a~Al 41 (205)
T PF02562_consen 3 KPKNEEQKFALDA-LLNNDLVIVNGPAGTGKTFLALAAAL 41 (205)
T ss_dssp ---SHHHHHHHHH-HHH-SEEEEE--TTSSTTHHHHHHHH
T ss_pred cCCCHHHHHHHHH-HHhCCeEEEECCCCCcHHHHHHHHHH
Confidence 4555554444333 33555667889999999999977664
No 393
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.05 E-value=0.049 Score=47.18 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=26.9
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLG 131 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~ 131 (383)
++.||||||||.++..++... |.++..+...+ +.+.+.
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~--~~~~~~ 43 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE--SPEELI 43 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC--CHHHHH
Confidence 468999999999998876643 67777776543 344443
No 394
>PRK06851 hypothetical protein; Provisional
Probab=94.04 E-value=0.063 Score=51.83 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=30.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR 128 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~ 128 (383)
.+|.|+||||||++++.+++.+ |..+-.+.|+.+-+.-
T Consensus 33 ~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~sl 73 (367)
T PRK06851 33 FILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSL 73 (367)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCce
Confidence 4678999999999999988877 5666677887765443
No 395
>PRK01184 hypothetical protein; Provisional
Probab=94.04 E-value=0.03 Score=48.60 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=21.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..++||+|+|||+.++ +++.+|.+++
T Consensus 4 i~l~G~~GsGKsT~a~-~~~~~g~~~i 29 (184)
T PRK01184 4 IGVVGMPGSGKGEFSK-IAREMGIPVV 29 (184)
T ss_pred EEEECCCCCCHHHHHH-HHHHcCCcEE
Confidence 3578999999999876 8888887653
No 396
>KOG1942|consensus
Probab=94.04 E-value=0.022 Score=52.39 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=31.6
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhC--CcEEEEeCCCCCC
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLA--KYVVVFNCSDQMD 126 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg--~~~~~~~c~~~~~ 126 (383)
.+...++.||||||||.++-++|+.|| .|+.-+-.|+..+
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhh
Confidence 356677899999999999999999998 4666666665544
No 397
>PRK13768 GTPase; Provisional
Probab=93.99 E-value=0.039 Score=50.72 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=29.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD 126 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~ 126 (383)
..+.||+|+|||+++..++..+ |+.+..++++++.+
T Consensus 5 i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~ 43 (253)
T PRK13768 5 VFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVE 43 (253)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccc
Confidence 4567999999999999888766 77899999887643
No 398
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.99 E-value=0.062 Score=50.36 Aligned_cols=63 Identities=17% Similarity=0.054 Sum_probs=45.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPV 156 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ 156 (383)
..+.|++++|||++++..+...|.|- .+-.+=..+...+.+.. +..++.-+++||+....+..
T Consensus 196 ~hl~G~Ss~GKTt~~~~a~Sv~G~p~-~l~~sw~~T~n~le~~a--~~~nd~~l~lDE~~~~~~~~ 258 (286)
T PF06048_consen 196 FHLYGQSSSGKTTALQLAASVWGNPD-GLIRSWNSTDNGLERTA--AAHNDLPLVLDELSQADPKD 258 (286)
T ss_pred EEEEeCCCCCHHHHHHHhhhhCcCch-hhhhcchhhHHHHHHHH--HHcCCcceEehhccccchhH
Confidence 44789999999999999999999996 22222234444444442 35578889999999887765
No 399
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.97 E-value=0.23 Score=44.55 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=36.7
Q ss_pred CCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCCCCCHHHHHHHHh-------hhhhcCceEEeccccc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSDQMDYRGLGRIYK-------GLAQSGSWGCFDEFNR 151 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~~~~~~~l~~~l~-------g~~~~g~w~~~dein~ 151 (383)
++.||||||||.++.+++... |.+++.+...+ +++.+.+-+. .....|.+.++|-...
T Consensus 23 li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee--~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 23 LISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE--PPEELIENMKSFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS---HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGG
T ss_pred EEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC--CHHHHHHHHHHcCCcHHHHhhcCCEEEEecccc
Confidence 468999999999998766433 88888887643 3455554443 2345667777665543
No 400
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.97 E-value=0.043 Score=52.18 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=26.7
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSD 123 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~ 123 (383)
.++||+|+|||+++..+|..+ |..+..+.|+.
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 468999999999999999877 56677777765
No 401
>PRK14527 adenylate kinase; Provisional
Probab=93.94 E-value=0.028 Score=49.25 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.++.||||+|||+.++.+|+.+|...
T Consensus 9 i~i~G~pGsGKsT~a~~La~~~~~~~ 34 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQELGLKK 34 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 45689999999999999999998663
No 402
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.91 E-value=0.083 Score=45.39 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=31.9
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGR 132 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~ 132 (383)
++.|++|+|||+.+.+++...|.+++.+.-....+.+.-.|
T Consensus 3 li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~r 43 (169)
T cd00544 3 LVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAER 43 (169)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHH
Confidence 46799999999999999988887777776666666654333
No 403
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=93.90 E-value=0.024 Score=53.27 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=25.6
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
-.+++||+|||||.++-.||+..| -++||++
T Consensus 6 ii~I~GpTasGKS~LAl~LA~~~~---eIIsaDS 36 (300)
T PRK14729 6 IVFIFGPTAVGKSNILFHFPKGKA---EIINVDS 36 (300)
T ss_pred EEEEECCCccCHHHHHHHHHHhCC---cEEeccH
Confidence 356789999999999999999944 5788865
No 404
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.90 E-value=0.19 Score=53.30 Aligned_cols=73 Identities=14% Similarity=-0.009 Sum_probs=43.3
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh---C--CcEEEEeCCC----------CCCHHHHHHHHhh---h--------hhcC
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL---A--KYVVVFNCSD----------QMDYRGLGRIYKG---L--------AQSG 141 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l---g--~~~~~~~c~~----------~~~~~~l~~~l~g---~--------~~~g 141 (383)
+...++.|+||||||++++.+.+.+ | .+++...-+. ......+.+.+.. . ....
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccC
Confidence 3456688999999999999877655 4 3333322111 1111223333321 0 1234
Q ss_pred ceEEecccccCChhhHHHH
Q psy6129 142 SWGCFDEFNRIELPVLSVA 160 (383)
Q Consensus 142 ~w~~~dein~l~~~~ls~l 160 (383)
.++++||..+++...+..+
T Consensus 418 ~llIvDEaSMvd~~~~~~L 436 (720)
T TIGR01448 418 DLLIVDESSMMDTWLALSL 436 (720)
T ss_pred CEEEEeccccCCHHHHHHH
Confidence 6889999999988765443
No 405
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.87 E-value=0.026 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred CCcCCCCCCccHHHHHHHHHhC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg 113 (383)
+++||+|+|||++++.++..+.
T Consensus 5 lI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 5 LVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999888775
No 406
>PLN02165 adenylate isopentenyltransferase
Probab=93.85 E-value=0.034 Score=52.82 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=24.6
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
.+.||+|+|||+++..||+.++.. +++|++
T Consensus 47 vIiGPTGSGKStLA~~LA~~l~~e--IIsaDs 76 (334)
T PLN02165 47 VIMGATGSGKSRLSVDLATRFPSE--IINSDK 76 (334)
T ss_pred EEECCCCCcHHHHHHHHHHHcCCc--eecCCh
Confidence 478999999999999999999875 345543
No 407
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.84 E-value=0.054 Score=46.63 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=24.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNC 121 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c 121 (383)
..+.|++|+|||++++.++..+ |..+..++.
T Consensus 7 i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 7 VWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 3468999999999999999988 444666654
No 408
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.83 E-value=0.024 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.2
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
.-.+++||+|+|||++++.+++.++.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~~ 31 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDPN 31 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCcc
Confidence 34567899999999999999998863
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.78 E-value=0.044 Score=54.29 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=28.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQ 124 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~ 124 (383)
.+++|++|+|||+++..+|..+ |..+..+.|+..
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 3478999999999999999877 667788888764
No 410
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.76 E-value=0.036 Score=52.95 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=27.9
Q ss_pred HHHHc--cCCCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 83 QALTM--SMGGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 83 ~al~~--~~~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
..+.. ....++.|++|+|||++++.|++.+|.++
T Consensus 155 ~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 155 REVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred HHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 44444 44567899999999999999999999886
No 411
>PRK14526 adenylate kinase; Provisional
Probab=93.74 E-value=0.042 Score=49.07 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.++.||||+|||+.++.+|+.+|.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~ 28 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH 28 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce
Confidence 35789999999999999999998664
No 412
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=93.73 E-value=0.04 Score=52.09 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
.++.||+|+|||+++..||+.++-++ ++|++
T Consensus 7 i~i~GptgsGKt~la~~la~~~~~~i--is~Ds 37 (307)
T PRK00091 7 IVIVGPTASGKTALAIELAKRLNGEI--ISADS 37 (307)
T ss_pred EEEECCCCcCHHHHHHHHHHhCCCcE--Eeccc
Confidence 45789999999999999999998664 55544
No 413
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.71 E-value=0.025 Score=52.39 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=21.9
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
..+....+.||.|+|||++++.++..+
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344556689999999999999988754
No 414
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=93.71 E-value=0.18 Score=49.69 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=70.6
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHH---HhhhhhcCceEEecccccCChhhHHHHHHH
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRI---YKGLAQSGSWGCFDEFNRIELPVLSVAAQQ 163 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~---l~g~~~~g~w~~~dein~l~~~~ls~l~~~ 163 (383)
.+...+=-||.|||||.+-+.++.. .+.+.....|-++-+.+. -.|+...-..++|||+..+.-+--+.+ +.
T Consensus 207 ~N~NliELgPrGTGKS~vy~eiSp~----~~liSGG~~T~A~LFyn~~~~~~GlV~~~D~VafDEv~~i~f~d~d~i-~i 281 (457)
T PF13337_consen 207 RNYNLIELGPRGTGKSYVYKEISPY----GILISGGQVTVAKLFYNMSTGQIGLVGRWDVVAFDEVAGIKFKDKDEI-QI 281 (457)
T ss_pred cccceEEEcCCCCCceeehhhcCcc----cEEEECCCcchHHheeeccCCcceeeeeccEEEEEeccCcccCChHHH-HH
Confidence 3444444699999999988877654 344454444444433222 245555556789999997764443333 22
Q ss_pred HHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchH--HHHHhccccccCCCCHHHHHHHHHhhcCCCc
Q psy6129 164 VAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPE--NLKIQFRTVAMMVPDRQIIIRVKLASCGFLE 241 (383)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~--~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~ 241 (383)
+..-.+. +.|.. .++.+ ..+..++...|..- ..+. .-..+|.++-=..-|...+=.++.+.-|+.-
T Consensus 282 ----mK~YMes-G~fsR-G~~~i--~a~as~vf~GNi~~----~v~~~~~~~~lf~~lP~~~~DsAflDRiH~~iPGWei 349 (457)
T PF13337_consen 282 ----MKDYMES-GSFSR-GKEEI--NADASMVFVGNINQ----SVENMLKTSHLFEPLPEEMRDSAFLDRIHGYIPGWEI 349 (457)
T ss_pred ----HHHHHhc-cceee-ccccc--ccceeEEEEcCcCC----cchhccccchhhhhcCHHHHHHHHHhHhheeccCccc
Confidence 2222222 23433 33444 45667777777531 1110 1113343332111244555556666666554
Q ss_pred h
Q psy6129 242 N 242 (383)
Q Consensus 242 ~ 242 (383)
+
T Consensus 350 P 350 (457)
T PF13337_consen 350 P 350 (457)
T ss_pred c
Confidence 4
No 415
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.68 E-value=0.27 Score=44.04 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=33.6
Q ss_pred CCcCCCCCCccHHHHHHHHHh---C------CcEEEEeCCCCCCHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---A------KYVVVFNCSDQMDYRGLGRIYK 135 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g------~~~~~~~c~~~~~~~~l~~~l~ 135 (383)
.+.||+|+|||+++..+|... + ..++.+.+....++..+.++..
T Consensus 23 ~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~ 75 (226)
T cd01393 23 EIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAV 75 (226)
T ss_pred EEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 378999999999999887653 3 5567778877777777766654
No 416
>PRK14974 cell division protein FtsY; Provisional
Probab=93.65 E-value=0.047 Score=52.24 Aligned_cols=33 Identities=30% Similarity=0.270 Sum_probs=25.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~ 123 (383)
..++||+|+|||+++..+|..+ |..+..++|+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 3478999999999999999876 45566666653
No 417
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.61 E-value=0.035 Score=45.89 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.8
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
.++||+|+|||++++.|++.+...
T Consensus 3 ~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 3 VLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEECCCCCCHHHHHHHHHhcCCcc
Confidence 578999999999999999987543
No 418
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.57 E-value=0.076 Score=44.54 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD 126 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~ 126 (383)
.+.|++|+|||++++.++..+ |.++..+.|+.+..
T Consensus 3 ~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~ 40 (148)
T cd03114 3 GITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSP 40 (148)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Confidence 467999999999999998876 67788888886544
No 419
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.55 E-value=0.049 Score=48.86 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.||+|+|||++++.+|+.+|.+++
T Consensus 5 i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 5 IAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 457899999999999999999997644
No 420
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=93.53 E-value=0.037 Score=56.07 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCcCCCCCCccHHHHHHHHHhCC-cEEEEeC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAK-YVVVFNC 121 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~-~~~~~~c 121 (383)
+|+||||+|||++++.+|+.+.. |++.+..
T Consensus 107 ~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 107 YLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred EEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 47899999999999999998864 5666643
No 421
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.52 E-value=0.033 Score=51.64 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCc---EEEEeCCCCCC--------------HHHHHHHHhhhh
Q psy6129 76 RCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKY---VVVFNCSDQMD--------------YRGLGRIYKGLA 138 (383)
Q Consensus 76 r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~---~~~~~c~~~~~--------------~~~l~~~l~g~~ 138 (383)
.....+..++..+...++.||+|+|||++++++...+... ++++.=...+. ...+...++.+.
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~L 194 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSAL 194 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHT
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHh
Confidence 3334444555566667788999999999999999888544 34443222111 112333444433
Q ss_pred -hcCceEEecccc
Q psy6129 139 -QSGSWGCFDEFN 150 (383)
Q Consensus 139 -~~g~w~~~dein 150 (383)
+...++++.|+-
T Consensus 195 R~~pD~iiigEiR 207 (270)
T PF00437_consen 195 RQDPDVIIIGEIR 207 (270)
T ss_dssp TS--SEEEESCE-
T ss_pred cCCCCcccccccC
Confidence 456788888877
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.51 E-value=0.064 Score=51.86 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=29.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQM 125 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~ 125 (383)
..+++||+|+|||+++..+|..+ |..+..++++..-
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 34578999999999999999766 6678888887653
No 423
>PRK13975 thymidylate kinase; Provisional
Probab=93.50 E-value=0.033 Score=48.83 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.1
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
-..+.|++|+|||++++.||+.++..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35678999999999999999999864
No 424
>PLN02199 shikimate kinase
Probab=93.46 E-value=0.042 Score=51.21 Aligned_cols=30 Identities=30% Similarity=0.221 Sum_probs=26.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
+....|+|.+|+|||++.+.||+.+|.+++
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fI 131 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFF 131 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456678999999999999999999999964
No 425
>PRK10867 signal recognition particle protein; Provisional
Probab=93.44 E-value=0.062 Score=53.15 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=28.5
Q ss_pred CCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSDQM 125 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~~~ 125 (383)
+++||+|+|||+++..+|..+ |..+..+.|+..-
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 478999999999999888765 6778899998644
No 426
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.43 E-value=0.041 Score=54.03 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=23.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
++++|++|||||++++.||+.+|..+
T Consensus 222 IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 222 VAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 45789999999999999999998774
No 427
>PTZ00301 uridine kinase; Provisional
Probab=93.42 E-value=0.083 Score=47.10 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.3
Q ss_pred CCcCCCCCCccHHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.||+|+|||++++.+++.+
T Consensus 7 gIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 7 GISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEECCCcCCHHHHHHHHHHHH
Confidence 467999999999999888765
No 428
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.37 E-value=0.089 Score=46.00 Aligned_cols=33 Identities=24% Similarity=0.073 Sum_probs=25.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCS 122 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~ 122 (383)
-+.+.|++|+|||+.++.|++.++ ..+......
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 40 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP 40 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 356789999999999999999984 445444433
No 429
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.36 E-value=0.028 Score=48.58 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
..++.||+|+|||++++.|++.++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccc
Confidence 34678999999999999999976543
No 430
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.31 E-value=0.28 Score=44.17 Aligned_cols=107 Identities=21% Similarity=0.147 Sum_probs=61.0
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAV 166 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~ 166 (383)
.++|.|.-||||++++|++-..++ ..++.++=++-.+...+-..+++. .....+++|++.-=+.+. ++ ..
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~-~~kFIlFcDDLSFe~gd~-~y--K~--- 159 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRAR-PEKFILFCDDLSFEEGDD-AY--KA--- 159 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcC-CceEEEEecCCCCCCCch-HH--HH---
Confidence 356899999999999999776663 345666544444433444444333 334666778765322221 11 01
Q ss_pred HHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc
Q psy6129 167 VLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR 217 (383)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr 217 (383)
+.+.. +|..-....|.-|.+|+| .|+-+|+.+...-.
T Consensus 160 -LKs~L---------eG~ve~rP~NVl~YATSN----RRHLl~e~~~dn~~ 196 (287)
T COG2607 160 -LKSAL---------EGGVEGRPANVLFYATSN----RRHLLPEDMKDNEG 196 (287)
T ss_pred -HHHHh---------cCCcccCCCeEEEEEecC----CcccccHhhhhCCC
Confidence 11111 233333456788889998 46667766655544
No 431
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=93.29 E-value=0.079 Score=45.33 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHcc---CCCCCcCCCCCCccHHHHHHHHHhCCcEEEE
Q psy6129 72 PLTDRCYITLAQALTMS---MGGSPCGPAGTGKTETVKDMGKTLAKYVVVF 119 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~---~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~ 119 (383)
|--..+...+...+... ..+++.+|+|+|||.++-.++..+..+++.+
T Consensus 6 ~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~ 56 (184)
T PF04851_consen 6 PYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIV 56 (184)
T ss_dssp HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEe
Confidence 34455666666666654 5677899999999999987666665554444
No 432
>PRK15453 phosphoribulokinase; Provisional
Probab=93.25 E-value=0.21 Score=46.39 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=35.5
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCc---EEEEeCCCCC--CHHHHHHHHhhhhhcCceEEecccc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKY---VVVFNCSDQM--DYRGLGRIYKGLAQSGSWGCFDEFN 150 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~---~~~~~c~~~~--~~~~l~~~l~g~~~~g~w~~~dein 150 (383)
.+.|++|+|||++++.++..++.. ..++..+.-- +-..+.....-....|. -||.++
T Consensus 9 ~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~--nfdhf~ 70 (290)
T PRK15453 9 AVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGR--HFSHFG 70 (290)
T ss_pred EEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCC--CCCCCC
Confidence 367999999999999999988643 5556555433 43444443333334443 455533
No 433
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.24 E-value=0.065 Score=47.59 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=25.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC-cEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK-YVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~-~~~~~~c~~ 123 (383)
..+.||+|+|||++++.++..++. .+..++.+.
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~ 42 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDN 42 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCeEecccc
Confidence 347899999999999999998864 344454433
No 434
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.22 E-value=0.02 Score=49.45 Aligned_cols=25 Identities=32% Similarity=0.222 Sum_probs=21.6
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
...++|++|+|||++++.+++.++.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999863
No 435
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.22 E-value=0.066 Score=52.50 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=26.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~ 123 (383)
.+++||+|+|||+++..||..+ |..+..+.|+.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 4578999999999999998643 56778888876
No 436
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.17 E-value=0.052 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.9
Q ss_pred CCcCCCCCCccHHHHHHHHHhC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg 113 (383)
.+.|++|+|||++++.|++.++
T Consensus 3 ~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 3 GISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEECCCCCCHHHHHHHHHHHcC
Confidence 4679999999999999999984
No 437
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.16 E-value=0.051 Score=51.11 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
.++.|+||||||++++.+++.+.
T Consensus 5 iil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCC
Confidence 45689999999999999999983
No 438
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.16 E-value=2.3 Score=39.80 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC-------c-----------------EEEEeC-CCCCCH
Q psy6129 76 RCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK-------Y-----------------VVVFNC-SDQMDY 127 (383)
Q Consensus 76 r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~-------~-----------------~~~~~c-~~~~~~ 127 (383)
+.+..+..++..+..+ +++|| +||+++++.+|+.+-. + ++.+.- ......
T Consensus 9 ~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~i 86 (290)
T PRK07276 9 KVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKT 86 (290)
T ss_pred HHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCH
Confidence 4455556666655433 46785 5788888888876521 1 111110 011223
Q ss_pred HHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC
Q psy6129 128 RGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY 202 (383)
Q Consensus 128 ~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~ 202 (383)
+.+..+...+. ....++++|+.+++..+.-..+ +..+-+ ..++..+|.+++.
T Consensus 87 dqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaL-------LKtLEE--------------Pp~~t~~iL~t~~-- 143 (290)
T PRK07276 87 DTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSL-------LKVIEE--------------PQSEIYIFLLTND-- 143 (290)
T ss_pred HHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHH-------HHHhcC--------------CCCCeEEEEEECC--
Confidence 33333333322 1223567788888777664433 221111 0133445555432
Q ss_pred CCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCC
Q psy6129 203 AGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFL 240 (383)
Q Consensus 203 ~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~ 240 (383)
...+++.++||++.+.+.. +.+.+.+++ ...|..
T Consensus 144 --~~~lLpTI~SRcq~i~f~~-~~~~~~~~L-~~~g~~ 177 (290)
T PRK07276 144 --ENKVLPTIKSRTQIFHFPK-NEAYLIQLL-EQKGLL 177 (290)
T ss_pred --hhhCchHHHHcceeeeCCC-cHHHHHHHH-HHcCCC
Confidence 2578899999999999955 556666554 456654
No 439
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.14 E-value=0.14 Score=42.56 Aligned_cols=75 Identities=19% Similarity=0.153 Sum_probs=45.6
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhCCc--EE------EEeCCCCCCHHHHHHHH--hhhhhcCceEEecccc-cCCh
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLAKY--VV------VFNCSDQMDYRGLGRIY--KGLAQSGSWGCFDEFN-RIEL 154 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~--~~------~~~c~~~~~~~~l~~~l--~g~~~~g~w~~~dein-~l~~ 154 (383)
..+.-..+.||.|+|||++++.++..+... -+ .+..-.+++.....|+. ..++....++++||-. -++.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 344455689999999999999998875210 01 11111225555555543 4567788899999954 4444
Q ss_pred hhHHHH
Q psy6129 155 PVLSVA 160 (383)
Q Consensus 155 ~~ls~l 160 (383)
+....+
T Consensus 104 ~~~~~l 109 (144)
T cd03221 104 ESIEAL 109 (144)
T ss_pred HHHHHH
Confidence 444333
No 440
>PRK13973 thymidylate kinase; Provisional
Probab=93.07 E-value=0.11 Score=46.50 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=28.8
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQM 125 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~ 125 (383)
...+.|+.|+|||+.++.|++.| |.+++........
T Consensus 5 ~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~ 43 (213)
T PRK13973 5 FITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGS 43 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 34578999999999999999999 8887666555443
No 441
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.07 E-value=0.16 Score=48.42 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=35.1
Q ss_pred CcCCCCCCccHHHHHHHHHh---------CCcEEEEeCCCCCCHHHHHHHHhh
Q psy6129 93 PCGPAGTGKTETVKDMGKTL---------AKYVVVFNCSDQMDYRGLGRIYKG 136 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~l---------g~~~~~~~c~~~~~~~~l~~~l~g 136 (383)
++||+|+|||.++.++|... +..++.+.+.+.++++.+.++...
T Consensus 107 i~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~ 159 (317)
T PRK04301 107 FYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEA 159 (317)
T ss_pred EECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHH
Confidence 68999999999999988663 346778888888888887777643
No 442
>PRK14529 adenylate kinase; Provisional
Probab=93.05 E-value=0.051 Score=48.89 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=23.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.||||+|||+.++.||+.+|.+.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 457899999999999999999997753
No 443
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.04 E-value=0.074 Score=51.69 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=30.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRI 133 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~ 133 (383)
.+++||+|+|||+++..||..+ |..+..+.|+..- ...+.++
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R-iaAvEQL 288 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQL 288 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHH
Confidence 3589999999999999999766 4567777776543 3334443
No 444
>KOG1803|consensus
Probab=92.97 E-value=0.058 Score=54.30 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=26.8
Q ss_pred HHHHHHHccCCCCCcCCCCCCccHHHHHHH-HHhCCcEEEEeCCC
Q psy6129 80 TLAQALTMSMGGSPCGPAGTGKTETVKDMG-KTLAKYVVVFNCSD 123 (383)
Q Consensus 80 ~l~~al~~~~~~~l~Gp~GtGKT~~i~~la-~~lg~~~~~~~c~~ 123 (383)
++..+++.....++.||||||||.|+..+- +...+.--++-|.+
T Consensus 193 Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaP 237 (649)
T KOG1803|consen 193 AVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAP 237 (649)
T ss_pred HHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcC
Confidence 344455555566788999999998887644 44433333344433
No 445
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=92.97 E-value=0.064 Score=50.10 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=24.7
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
++.||+|+|||+++..||+.++-.+ ++|++
T Consensus 3 ~i~G~t~~GKs~la~~l~~~~~~~i--is~Ds 32 (287)
T TIGR00174 3 FIMGPTAVGKSQLAIQLAKKLNAEI--ISVDS 32 (287)
T ss_pred EEECCCCCCHHHHHHHHHHhCCCcE--EEech
Confidence 5789999999999999999998664 55543
No 446
>PLN02674 adenylate kinase
Probab=92.96 E-value=0.069 Score=48.68 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=23.9
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
...++.||||+||++.++.||+.+|...
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~h 59 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCH 59 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 3356789999999999999999998653
No 447
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.96 E-value=0.074 Score=52.58 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSDQ 124 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~~ 124 (383)
.+++||+|+|||+++..+|..+ |..+..++|+..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 3478999999999998888764 677889999864
No 448
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.94 E-value=0.058 Score=37.92 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.++.||.|+|||+++.++.-.+
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999887655
No 449
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=92.88 E-value=0.26 Score=54.10 Aligned_cols=74 Identities=18% Similarity=0.085 Sum_probs=46.2
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCC----------CCCHHHHHHHHhh------hhhcCceEEec
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSD----------QMDYRGLGRIYKG------LAQSGSWGCFD 147 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~----------~~~~~~l~~~l~g------~~~~g~w~~~d 147 (383)
......+.|++|||||++++.+...+ |..++..--+. ......+.+++.+ ....+.++++|
T Consensus 396 ~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVID 475 (1102)
T PRK13826 396 PARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLD 475 (1102)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEE
Confidence 34456689999999999999877654 66665442211 1111123333211 12346789999
Q ss_pred ccccCChhhHHHH
Q psy6129 148 EFNRIELPVLSVA 160 (383)
Q Consensus 148 ein~l~~~~ls~l 160 (383)
|.-+++...+..+
T Consensus 476 EAsMv~~~~m~~L 488 (1102)
T PRK13826 476 EAGMVASRQMALF 488 (1102)
T ss_pred CcccCCHHHHHHH
Confidence 9999988876654
No 450
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.82 E-value=0.18 Score=47.86 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=34.3
Q ss_pred CcCCCCCCccHHHHHHHHHh---------CCcEEEEeCCCCCCHHHHHHHHh
Q psy6129 93 PCGPAGTGKTETVKDMGKTL---------AKYVVVFNCSDQMDYRGLGRIYK 135 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~l---------g~~~~~~~c~~~~~~~~l~~~l~ 135 (383)
++||||+|||.++.++|... +..++.+.+.+.++++.+.++..
T Consensus 100 i~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~ 151 (310)
T TIGR02236 100 VFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE 151 (310)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence 68999999999999988663 23677788877788888777764
No 451
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.81 E-value=0.072 Score=46.98 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=22.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.++.|+||+|||+.++.+|..+|...
T Consensus 6 i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 6 HFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 35689999999999999999988653
No 452
>PRK12608 transcription termination factor Rho; Provisional
Probab=92.80 E-value=0.63 Score=45.04 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=34.3
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCc-----EEEEeCCC-CCCHHHHHHHHhh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKY-----VVVFNCSD-QMDYRGLGRIYKG 136 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~-----~~~~~c~~-~~~~~~l~~~l~g 136 (383)
++-++++||+|||||++++.+++.+... ++..-+.+ ..+..++.+.+.+
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~ 187 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKG 187 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhh
Confidence 4446799999999999999999988542 34434444 4455667666655
No 453
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.79 E-value=0.28 Score=42.44 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=45.2
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhCCc--EEEEe------CCC--CCCHHHHHHHH--hhhhhcCceEEecccc-cC
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLAKY--VVVFN------CSD--QMDYRGLGRIY--KGLAQSGSWGCFDEFN-RI 152 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~--~~~~~------c~~--~~~~~~l~~~l--~g~~~~g~w~~~dein-~l 152 (383)
..+....+.||.|+|||++++.++..+-.. -+.++ +.. .++...-.|+. ..++.....+++||-. -+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 344555689999999999999999865211 01111 111 13333333332 3456778899999964 44
Q ss_pred ChhhHHHHHHHH
Q psy6129 153 ELPVLSVAAQQV 164 (383)
Q Consensus 153 ~~~~ls~l~~~~ 164 (383)
++.....+.+.+
T Consensus 103 D~~~~~~l~~~l 114 (177)
T cd03222 103 DIEQRLNAARAI 114 (177)
T ss_pred CHHHHHHHHHHH
Confidence 454444443333
No 454
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.78 E-value=0.11 Score=48.19 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=24.4
Q ss_pred HHHHHHccCC-CCCcCCCCCCccHHHHHHHHHhC
Q psy6129 81 LAQALTMSMG-GSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 81 l~~al~~~~~-~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
+..++....+ .++.||+|+|||++++++...+.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3444555555 45789999999999999877664
No 455
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.76 E-value=0.089 Score=52.69 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=26.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHh----C-CcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL----A-KYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l----g-~~~~~~~c~~ 123 (383)
..++||+|+|||+|+..||..+ | ..+..+.|+.
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 3478999999999999999765 3 3566777765
No 456
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=92.75 E-value=0.13 Score=50.16 Aligned_cols=63 Identities=32% Similarity=0.374 Sum_probs=41.5
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhh-hhhcCceEEecccccC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKG-LAQSGSWGCFDEFNRI 152 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g-~~~~g~w~~~dein~l 152 (383)
.+.+.||.|+||++++-.=+-.=.+.+.+++|..-.....=..+++. +.+.|.|-+|-.+|.+
T Consensus 19 FIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~nSi 82 (431)
T PF10443_consen 19 FIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMNSI 82 (431)
T ss_pred EEEEECCCCCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHHHH
Confidence 34567999999999993222222455889999986654333334443 4567888888776644
No 457
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.74 E-value=0.068 Score=50.64 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=28.0
Q ss_pred HHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 80 TLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 80 ~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
.+..++..+...++.||+|+|||++++.++..+.
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 3445667777788999999999999999998774
No 458
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.74 E-value=0.2 Score=43.50 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=24.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNC 121 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c 121 (383)
..+.|++|+|||++++.++..+ |...+.++.
T Consensus 21 i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~ 54 (184)
T TIGR00455 21 IWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG 54 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 3468999999999999999987 344556654
No 459
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=92.72 E-value=0.07 Score=49.98 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=27.8
Q ss_pred HHHHHc-cCC--CCCcCCCCCCccHHHHHHHHHhCCcEEEEe
Q psy6129 82 AQALTM-SMG--GSPCGPAGTGKTETVKDMGKTLAKYVVVFN 120 (383)
Q Consensus 82 ~~al~~-~~~--~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~ 120 (383)
.+.+.. ..| +++.|++|+|||+++..||+.+|.+. +++
T Consensus 83 ~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~-vi~ 123 (301)
T PRK04220 83 WRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRS-VIG 123 (301)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE-EEe
Confidence 344444 333 34579999999999999999998773 444
No 460
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.71 E-value=0.17 Score=45.22 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=35.6
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhhh--hhcCceEEecc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKGL--AQSGSWGCFDE 148 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g~--~~~g~w~~~de 148 (383)
.+.||||+|||+++.++|... |.+++.+......+ +.+.++.... ...+.|.+++.
T Consensus 23 ~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 83 (218)
T cd01394 23 QVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSS-ERFRQIAGDRPERAASSIIVFEP 83 (218)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHhHChHhhhcCEEEEeC
Confidence 368999999999999988655 56777777655443 4444443211 12345666553
No 461
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.67 E-value=0.038 Score=52.92 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=20.1
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHH
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
.+-...|.||+|||||++.+.+|..
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3344568899999999999998864
No 462
>PLN02459 probable adenylate kinase
Probab=92.67 E-value=0.081 Score=48.61 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=34.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC-----HHHHHHHHhhhhhcCce
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD-----YRGLGRIYKGLAQSGSW 143 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~-----~~~l~~~l~g~~~~g~w 143 (383)
.++.||||+||++.++.+|+.+|.+. +++..-+. ...+++.++..+..|..
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdllR~ei~~~t~lg~~i~~~~~~G~l 87 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLGVPH--IATGDLVREEIKSSGPLGAQLKEIVNQGKL 87 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHHHHHHHhccchhHHHHHHHHHcCCc
Confidence 45689999999999999999998664 34333221 11255556666666644
No 463
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.66 E-value=0.17 Score=46.62 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=34.4
Q ss_pred CcCCCCCCccHHHHHHHHHh---------CCcEEEEeCCCCCCHHHHHHHHh
Q psy6129 93 PCGPAGTGKTETVKDMGKTL---------AKYVVVFNCSDQMDYRGLGRIYK 135 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~l---------g~~~~~~~c~~~~~~~~l~~~l~ 135 (383)
++||+|+|||.++.++|-.. +..++.+++...++++-+.++.+
T Consensus 43 i~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~ 94 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE 94 (256)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred EEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence 58999999999999988654 33478888888899888888764
No 464
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.65 E-value=0.071 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+++||+|+|||++++++++.+
T Consensus 137 ilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 137 VFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999876
No 465
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.65 E-value=0.075 Score=43.02 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=18.3
Q ss_pred CcCCCCCCccHHHHHHHHHh
Q psy6129 93 PCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~l 112 (383)
+.||+|||||.+++-+|+.+
T Consensus 58 fHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred eecCCCCcHHHHHHHHHHHH
Confidence 57999999999999999985
No 466
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=92.63 E-value=0.13 Score=52.17 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=39.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEeccccc
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNR 151 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~ 151 (383)
++++|++|+|||+.++.++...|.. .+|-+..-+...+......++..|.-+++|.-|.
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~g~~--~vn~D~lg~~~~~~~~a~~~L~~G~sVVIDaTn~ 430 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPAGYK--HVNADTLGSTQNCLTACERALDQGKRCAIDNTNP 430 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EECcHHHHHHHHHHHHHHHHHhCCCcEEEECCCC
Confidence 3468999999999999999987644 4443322122222233445677888889998884
No 467
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.55 E-value=0.086 Score=45.63 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=24.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
..+.||+|+|||++++.++..++.. .++...
T Consensus 6 i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd~ 36 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAALFSAK--FIDGDD 36 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCE--EECCcc
Confidence 4578999999999999999998864 444443
No 468
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=92.55 E-value=0.084 Score=46.48 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=25.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
..++|++|+|||+.++.+++.+|.++ ++|+.
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~--i~~D~ 34 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPI--LDADI 34 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeE--eeCcH
Confidence 35789999999999999999889875 45543
No 469
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.54 E-value=0.066 Score=47.82 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l 112 (383)
-++.||||+|||++.+++|+.+
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHh
Confidence 4578999999999999999976
No 470
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.51 E-value=0.13 Score=48.44 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD 126 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~ 126 (383)
..+.||+|+|||+++..++..+ |..+.++.++....
T Consensus 37 i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~ 75 (300)
T TIGR00750 37 VGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSP 75 (300)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 3468999999999999988876 67788888886543
No 471
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.50 E-value=0.039 Score=52.55 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=22.3
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
..+-...|.||+|||||++.+-+|-...
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444566899999999999999987653
No 472
>PRK06761 hypothetical protein; Provisional
Probab=92.48 E-value=0.088 Score=49.02 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=23.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVF 119 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~ 119 (383)
..+.||+|+|||++++.+++.++...+.+
T Consensus 6 IvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 6 IIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 45789999999999999999997654333
No 473
>PLN02840 tRNA dimethylallyltransferase
Probab=92.46 E-value=0.072 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.++.||+|+|||+++..||+.++-++
T Consensus 24 i~I~GptgsGKTtla~~La~~~~~~i 49 (421)
T PLN02840 24 IVISGPTGAGKSRLALELAKRLNGEI 49 (421)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCe
Confidence 45789999999999999999998764
No 474
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.45 E-value=0.053 Score=47.89 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=21.3
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+..+.--.+.||+||||+++++.+-++-
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 3344445689999999999999876654
No 475
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.43 E-value=0.12 Score=43.67 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.1
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNC 121 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c 121 (383)
.++|.+|+|||++++.|.+.| |.+++.++.
T Consensus 6 wltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 6 WLTGLSGSGKTTLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC
Confidence 478999999999999999877 788888853
No 476
>KOG3354|consensus
Probab=92.40 E-value=0.088 Score=43.99 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=32.4
Q ss_pred CcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhh
Q psy6129 93 PCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLA 138 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~ 138 (383)
+.|++|+|||+..+.|++.||.++ +..+.--.++.+.+.-.|+.
T Consensus 17 vmGvsGsGKSTigk~L~~~l~~~F--~dgDd~Hp~~NveKM~~Gip 60 (191)
T KOG3354|consen 17 VMGVSGSGKSTIGKALSEELGLKF--IDGDDLHPPANVEKMTQGIP 60 (191)
T ss_pred EEecCCCChhhHHHHHHHHhCCcc--cccccCCCHHHHHHHhcCCC
Confidence 469999999999999999999775 44555555555555555543
No 477
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=92.37 E-value=0.27 Score=41.71 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=35.8
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC--HHH-HHHHHhhhhhc-CceEEecccc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD--YRG-LGRIYKGLAQS-GSWGCFDEFN 150 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~--~~~-l~~~l~g~~~~-g~w~~~dein 150 (383)
.+++..|||||+++.+|++.+|.. -.++-++-+. ... +...+.-+... -..++.|-=|
T Consensus 3 vPIAtiGCGKTTva~aL~~LFg~w-gHvQnDnI~~k~~~~f~~~~l~~L~~~~~~vViaDRNN 64 (168)
T PF08303_consen 3 VPIATIGCGKTTVALALSNLFGEW-GHVQNDNITGKRKPKFIKAVLELLAKDTHPVVIADRNN 64 (168)
T ss_pred eeecCCCcCHHHHHHHHHHHcCCC-CccccCCCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 357899999999999999999973 2333333222 333 33445444333 4455556555
No 478
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.36 E-value=0.63 Score=45.29 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=23.2
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
.+.-++++||+|+|||++++.+++....
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 3445678999999999999999987754
No 479
>KOG0727|consensus
Probab=92.34 E-value=0.086 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=19.7
Q ss_pred HHHHHHHhc--cccEEEECCCCCCC
Q psy6129 361 IQLYETQRV--RHGIMTLGPTGAVT 383 (383)
Q Consensus 361 ~~l~~~l~~--~~gviLvG~~GsGK 383 (383)
.+||+.+.. ++||+|+|||||||
T Consensus 178 ~~ly~qigidpprgvllygppg~gk 202 (408)
T KOG0727|consen 178 ADLYKQIGIDPPRGVLLYGPPGTGK 202 (408)
T ss_pred HHHHHHhCCCCCcceEEeCCCCCcH
Confidence 368888865 68999999999998
No 480
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=92.34 E-value=0.32 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.+.||+|+|||++++.+|+.+|.++
T Consensus 446 ~i~g~~~~gks~~~~~l~~~~~~~~ 470 (661)
T PRK11860 446 CIDGPTASGKGTVAARVAEALGYHY 470 (661)
T ss_pred EeeCCCCCCHHHHHHHHHHHhCCeE
Confidence 3569999999999999999999986
No 481
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.30 E-value=0.14 Score=48.97 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=28.2
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD 126 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~ 126 (383)
.+.||+|+|||+++..++..+ |..+.++..+....
T Consensus 60 gi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 60 GITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 368999999999999877665 66788888877554
No 482
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.23 E-value=0.037 Score=43.61 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=18.6
Q ss_pred cCCCCCcCCCCCCccHHHHHHH
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMG 109 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la 109 (383)
+....+.||+|+|||++++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4456789999999999999876
No 483
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.18 E-value=0.087 Score=45.75 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=27.4
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCC-cEEEEeCCC
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAK-YVVVFNCSD 123 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~-~~~~~~c~~ 123 (383)
.++.+|+||+|+||+++++.|.+.+.. ....+.++.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecc
Confidence 345678999999999999999998864 434454433
No 484
>PRK12338 hypothetical protein; Provisional
Probab=92.18 E-value=0.08 Score=50.05 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.2
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
++.|++|+|||++++.+|+.+|...
T Consensus 8 ~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 8 LIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCeE
Confidence 4679999999999999999998753
No 485
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=92.15 E-value=0.084 Score=55.99 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.+.||||||||++++.||+.+|..+
T Consensus 5 ~I~G~~GsGKST~ak~la~~l~~~~ 29 (712)
T PRK09518 5 AIDGPAGVGKSSVSRALAQYLGYAY 29 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcE
Confidence 5789999999999999999998654
No 486
>PRK08356 hypothetical protein; Provisional
Probab=92.15 E-value=0.086 Score=46.32 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=23.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
..++||+|+|||+.++.|++ .|.+ .+.+.+
T Consensus 8 i~~~G~~gsGK~t~a~~l~~-~g~~--~is~~~ 37 (195)
T PRK08356 8 VGVVGKIAAGKTTVAKFFEE-KGFC--RVSCSD 37 (195)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCc--EEeCCC
Confidence 35789999999999999965 6765 455443
No 487
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.15 E-value=0.049 Score=46.31 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=24.0
Q ss_pred HHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 84 ALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 84 al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+++.+...++.||+|+||+++.|.+|...
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34556667899999999999999999864
No 488
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.07 E-value=0.045 Score=49.44 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=23.3
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+..+..+.+.||+|||||++.+-+|...
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556677899999999999999988755
No 489
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.99 E-value=0.39 Score=40.39 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=43.8
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcE--EEEeCCCC-----------------CCHHHHHHH--HhhhhhcCceEE
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYV--VVFNCSDQ-----------------MDYRGLGRI--YKGLAQSGSWGC 145 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~--~~~~c~~~-----------------~~~~~l~~~--l~g~~~~g~w~~ 145 (383)
.+.-..+.||.|+|||++++.++..+...- +.++.... .+.....|+ ...++.....++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEE
Confidence 344556899999999999999998763221 23332211 111222222 233466778899
Q ss_pred ecccc-cCChhhHHHHHH
Q psy6129 146 FDEFN-RIELPVLSVAAQ 162 (383)
Q Consensus 146 ~dein-~l~~~~ls~l~~ 162 (383)
+||.. -++.+....+.+
T Consensus 104 lDEp~~~lD~~~~~~l~~ 121 (157)
T cd00267 104 LDEPTSGLDPASRERLLE 121 (157)
T ss_pred EeCCCcCCCHHHHHHHHH
Confidence 99975 444444444333
No 490
>PRK05973 replicative DNA helicase; Provisional
Probab=91.97 E-value=0.07 Score=48.41 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=25.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQ 124 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~ 124 (383)
.++.|+||+|||.++-++|... |.+++.|.+.+.
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 3568999999999998877644 788777765443
No 491
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=91.94 E-value=0.11 Score=48.89 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVF 119 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~ 119 (383)
.++.||+++|||.++-+||+.+|-+++..
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~~~eIIs~ 34 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRLGGEIISL 34 (308)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEec
Confidence 45789999999999999999999987654
No 492
>PRK05439 pantothenate kinase; Provisional
Probab=91.92 E-value=0.18 Score=47.59 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=27.4
Q ss_pred CcCCCCCCccHHHHHHHHHhCC-----cEEEEeCCCCCCH
Q psy6129 93 PCGPAGTGKTETVKDMGKTLAK-----YVVVFNCSDQMDY 127 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~lg~-----~~~~~~c~~~~~~ 127 (383)
+.|++|+|||++++.|+..++. .+.+++.+.-.-+
T Consensus 91 IaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 91 IAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 6799999999999999998763 4667776665433
No 493
>PRK10436 hypothetical protein; Provisional
Probab=91.91 E-value=0.16 Score=50.77 Aligned_cols=34 Identities=38% Similarity=0.449 Sum_probs=24.1
Q ss_pred HHHHHHccCCCC-CcCCCCCCccHHHHHHHHHhCC
Q psy6129 81 LAQALTMSMGGS-PCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 81 l~~al~~~~~~~-l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
+..++....|.+ ++||+|+|||+|+.++.+.+..
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 334455555544 5799999999999887776643
No 494
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.88 E-value=0.15 Score=43.72 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=29.9
Q ss_pred HHccCCC--CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCC
Q psy6129 85 LTMSMGG--SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSD 123 (383)
Q Consensus 85 l~~~~~~--~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~ 123 (383)
+..+.|. .++|.+|+|||+++.+|.+.| |+.++++..+.
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDn 61 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDN 61 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChh
Confidence 3344443 378999999999999999877 78888886543
No 495
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.85 E-value=0.13 Score=44.37 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=24.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
.++.||+|+||+++++.|-+.. ..-+.++.+.
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TT 38 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDD-KLRFSVSATT 38 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhhc-CeEEEEEecc
Confidence 4578999999999999988887 4445666554
No 496
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.84 E-value=0.14 Score=45.10 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=24.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNC 121 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c 121 (383)
..++|++|+|||++++.++..+ |...+.++.
T Consensus 27 i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~ 60 (198)
T PRK03846 27 LWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 3468999999999999999987 444555543
No 497
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.84 E-value=0.069 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.6
Q ss_pred CCCCcCCCCCCccHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
..+++||+|+|||++++.|++.
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 3457899999999999999754
No 498
>PRK13764 ATPase; Provisional
Probab=91.83 E-value=0.096 Score=53.85 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=23.7
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
....+.+++||||+|||+++++++..+.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4456677889999999999999998875
No 499
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.82 E-value=0.11 Score=44.94 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.2
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
.++|++|+|||+.++.+++ +|.+ +++|+.
T Consensus 3 ~itG~~gsGKst~~~~l~~-~g~~--~i~~D~ 31 (179)
T cd02022 3 GLTGGIGSGKSTVAKLLKE-LGIP--VIDADK 31 (179)
T ss_pred EEECCCCCCHHHHHHHHHH-CCCC--EEecCH
Confidence 4789999999999999999 7866 466654
No 500
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.82 E-value=0.065 Score=42.54 Aligned_cols=21 Identities=24% Similarity=0.348 Sum_probs=18.1
Q ss_pred CCcCCCCCCccHHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l 112 (383)
++.|++|+|||++++.++..-
T Consensus 3 ~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 3 VVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEECSTTSSHHHHHHHHHHSS
T ss_pred EEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999988644
Done!