Query psy6129
Match_columns 383
No_of_seqs 201 out of 1897
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 18:22:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 5.5E-91 1.9E-95 791.8 37.3 378 6-383 517-919 (3245)
2 4akg_A Glutathione S-transfera 100.0 5E-81 1.7E-85 709.0 33.7 374 6-383 559-936 (2695)
3 3vkg_A Dynein heavy chain, cyt 100.0 3.2E-33 1.1E-37 319.4 28.0 315 65-383 1281-1659(3245)
4 4akg_A Glutathione S-transfera 100.0 3.1E-31 1E-35 302.3 27.3 314 66-383 1245-1622(2695)
5 2r44_A Uncharacterized protein 99.7 1.4E-15 4.9E-20 144.1 16.6 196 77-282 35-275 (331)
6 3cf2_A TER ATPase, transitiona 99.3 9.8E-13 3.4E-17 136.8 7.0 125 89-232 239-380 (806)
7 1g8p_A Magnesium-chelatase 38 99.2 8.1E-10 2.8E-14 104.8 18.7 129 88-227 45-222 (350)
8 1ofh_A ATP-dependent HSL prote 99.2 2.2E-10 7.7E-15 106.7 13.0 143 88-234 50-212 (310)
9 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 3.1E-10 1.1E-14 112.7 14.3 142 79-233 32-192 (500)
10 3pfi_A Holliday junction ATP-d 99.2 2.4E-10 8.2E-15 108.2 12.9 133 89-233 56-193 (338)
11 3f9v_A Minichromosome maintena 99.2 9.4E-12 3.2E-16 126.7 3.3 127 90-227 329-481 (595)
12 4b4t_J 26S protease regulatory 99.2 2.2E-10 7.6E-15 109.9 12.6 130 87-232 181-327 (405)
13 1r6b_X CLPA protein; AAA+, N-t 99.1 1.2E-09 4E-14 114.8 18.4 135 79-233 196-358 (758)
14 1hqc_A RUVB; extended AAA-ATPa 99.1 1.4E-09 4.9E-14 102.0 16.8 134 89-233 39-177 (324)
15 2bjv_A PSP operon transcriptio 99.1 5E-10 1.7E-14 102.4 12.9 144 73-227 14-180 (265)
16 4fcw_A Chaperone protein CLPB; 99.1 2.1E-09 7.3E-14 100.2 17.4 134 90-233 49-225 (311)
17 4b4t_K 26S protease regulatory 99.1 1E-09 3.4E-14 106.7 15.2 162 88-281 206-391 (428)
18 3pxi_A Negative regulator of g 99.1 4.4E-10 1.5E-14 118.0 12.0 133 91-233 524-671 (758)
19 4b4t_H 26S protease regulatory 99.1 6.4E-10 2.2E-14 108.1 12.2 130 87-232 242-388 (467)
20 3n70_A Transport activator; si 99.1 6.5E-11 2.2E-15 98.3 4.5 129 73-225 9-143 (145)
21 1xwi_A SKD1 protein; VPS4B, AA 99.1 3.3E-09 1.1E-13 99.9 16.4 130 89-233 46-188 (322)
22 1r6b_X CLPA protein; AAA+, N-t 99.1 3.4E-10 1.1E-14 118.9 10.5 133 91-233 491-662 (758)
23 3m6a_A ATP-dependent protease 99.0 3.5E-10 1.2E-14 114.0 9.3 135 91-233 111-262 (543)
24 2chg_A Replication factor C sm 99.0 6.6E-09 2.3E-13 91.2 16.5 132 77-233 25-170 (226)
25 4b4t_M 26S protease regulatory 99.0 2.4E-10 8.2E-15 111.2 7.6 133 88-236 215-367 (434)
26 4b4t_I 26S protease regulatory 99.0 3.2E-10 1.1E-14 109.2 8.3 133 88-236 216-368 (437)
27 4b4t_L 26S protease subunit RP 99.0 5.2E-10 1.8E-14 108.9 9.8 132 88-235 215-366 (437)
28 2qp9_X Vacuolar protein sortin 99.0 1.2E-09 4.2E-14 104.2 11.9 130 89-233 85-226 (355)
29 1qvr_A CLPB protein; coiled co 99.0 2.7E-10 9.3E-15 121.0 7.8 140 78-233 179-341 (854)
30 3pxi_A Negative regulator of g 99.0 6.2E-10 2.1E-14 116.8 9.4 130 78-234 189-335 (758)
31 3eie_A Vacuolar protein sortin 99.0 7.7E-10 2.6E-14 104.2 9.2 129 90-233 53-193 (322)
32 3f8t_A Predicted ATPase involv 99.0 2.1E-09 7.1E-14 104.4 12.2 179 90-283 241-462 (506)
33 3syl_A Protein CBBX; photosynt 99.0 9E-10 3.1E-14 102.8 9.5 162 91-280 70-258 (309)
34 3u61_B DNA polymerase accessor 99.0 3E-09 1E-13 100.0 12.5 126 78-229 35-170 (324)
35 3co5_A Putative two-component 99.0 2.6E-10 9E-15 94.4 4.6 129 73-225 12-141 (143)
36 3t15_A Ribulose bisphosphate c 99.0 5.6E-10 1.9E-14 103.8 7.2 136 91-233 39-194 (293)
37 3vfd_A Spastin; ATPase, microt 99.0 2.1E-09 7.1E-14 103.9 10.9 131 89-233 149-291 (389)
38 2qz4_A Paraplegin; AAA+, SPG7, 99.0 2E-09 7E-14 97.7 10.2 166 89-281 40-226 (262)
39 3d8b_A Fidgetin-like protein 1 98.9 3.9E-09 1.3E-13 100.8 11.9 132 88-233 117-260 (357)
40 3h4m_A Proteasome-activating n 98.9 1.6E-09 5.4E-14 100.0 8.1 126 88-233 51-197 (285)
41 3hws_A ATP-dependent CLP prote 98.9 2.7E-09 9.3E-14 102.1 9.5 68 88-155 51-131 (363)
42 1um8_A ATP-dependent CLP prote 98.9 3.4E-09 1.2E-13 101.9 9.3 67 89-155 73-152 (376)
43 1ojl_A Transcriptional regulat 98.9 2.3E-09 7.9E-14 100.1 7.7 144 72-226 9-175 (304)
44 3uk6_A RUVB-like 2; hexameric 98.9 5.2E-08 1.8E-12 93.0 15.9 189 67-281 45-307 (368)
45 1jbk_A CLPB protein; beta barr 98.9 1.5E-09 5E-14 93.2 4.5 140 78-232 31-193 (195)
46 2zan_A Vacuolar protein sortin 98.8 2E-09 6.8E-14 105.9 6.0 134 89-233 168-310 (444)
47 3b9p_A CG5977-PA, isoform A; A 98.8 4.7E-08 1.6E-12 90.6 13.9 133 88-233 54-198 (297)
48 1sxj_D Activator 1 41 kDa subu 98.8 3.2E-08 1.1E-12 93.7 12.8 131 79-234 47-202 (353)
49 1sxj_B Activator 1 37 kDa subu 98.8 5.1E-08 1.7E-12 91.1 13.8 133 77-234 29-176 (323)
50 3pvs_A Replication-associated 98.8 2.2E-08 7.5E-13 98.3 11.3 125 81-233 41-174 (447)
51 1njg_A DNA polymerase III subu 98.8 7.3E-08 2.5E-12 85.5 13.6 132 77-233 31-194 (250)
52 3bos_A Putative DNA replicatio 98.8 1.7E-07 5.8E-12 83.4 15.9 144 68-233 30-183 (242)
53 1lv7_A FTSH; alpha/beta domain 98.8 2.2E-08 7.6E-13 90.9 10.0 128 89-232 46-190 (257)
54 2p65_A Hypothetical protein PF 98.8 2E-09 6.9E-14 92.0 2.6 124 79-225 32-187 (187)
55 1iqp_A RFCS; clamp loader, ext 98.8 6.4E-08 2.2E-12 90.5 12.7 131 78-233 34-178 (327)
56 2qby_B CDC6 homolog 3, cell di 98.7 5.2E-08 1.8E-12 93.4 12.1 122 91-234 48-207 (384)
57 3cf0_A Transitional endoplasmi 98.7 1.9E-08 6.5E-13 93.7 8.5 130 88-233 49-195 (301)
58 1l8q_A Chromosomal replication 98.7 1.8E-07 6.3E-12 87.8 14.6 122 89-233 38-175 (324)
59 2chq_A Replication factor C sm 98.7 1.7E-08 5.8E-13 94.1 7.4 141 78-243 26-183 (319)
60 3te6_A Regulatory protein SIR3 98.7 6.4E-08 2.2E-12 90.4 10.7 139 75-233 30-207 (318)
61 1qvr_A CLPB protein; coiled co 98.7 2.9E-08 9.8E-13 105.4 9.3 134 90-233 590-766 (854)
62 2z4s_A Chromosomal replication 98.7 2.2E-07 7.5E-12 91.1 14.7 123 90-234 132-273 (440)
63 1d2n_A N-ethylmaleimide-sensit 98.7 1.1E-08 3.7E-13 93.8 4.6 165 89-281 65-246 (272)
64 3hu3_A Transitional endoplasmi 98.7 2.1E-08 7.1E-13 99.6 6.6 129 89-233 239-381 (489)
65 1sxj_A Activator 1 95 kDa subu 98.7 1.7E-07 5.9E-12 93.8 13.0 123 89-234 78-219 (516)
66 2ce7_A Cell division protein F 98.6 6E-08 2E-12 95.7 9.3 127 89-231 50-193 (476)
67 2r62_A Cell division protease 98.6 1.1E-08 3.9E-13 93.3 3.8 135 88-233 44-192 (268)
68 2v1u_A Cell division control p 98.6 1.5E-07 5E-12 90.1 10.9 128 90-234 46-211 (387)
69 3cf2_A TER ATPase, transitiona 98.6 3.5E-08 1.2E-12 102.8 6.3 129 88-232 511-656 (806)
70 1a5t_A Delta prime, HOLB; zinc 98.6 8.1E-07 2.8E-11 83.9 14.7 144 71-239 4-182 (334)
71 2x8a_A Nuclear valosin-contain 98.6 2.8E-07 9.5E-12 84.6 11.0 130 88-233 44-187 (274)
72 1jr3_A DNA polymerase III subu 98.6 8.8E-07 3E-11 84.4 14.3 132 78-234 25-188 (373)
73 1sxj_C Activator 1 40 kDa subu 98.6 1.5E-06 5.1E-11 82.1 15.7 151 76-251 32-199 (340)
74 1ny5_A Transcriptional regulat 98.5 1.1E-06 3.9E-11 84.6 13.8 144 72-226 144-310 (387)
75 1in4_A RUVB, holliday junction 98.5 3.3E-06 1.1E-10 79.6 16.4 134 89-234 52-190 (334)
76 3pxg_A Negative regulator of g 98.4 1.1E-07 3.9E-12 94.0 5.0 129 79-234 190-335 (468)
77 2dhr_A FTSH; AAA+ protein, hex 98.4 2.5E-07 8.4E-12 91.8 7.0 129 89-233 65-210 (499)
78 3dzd_A Transcriptional regulat 98.4 6.4E-07 2.2E-11 85.8 9.5 142 75-226 139-301 (368)
79 3k1j_A LON protease, ATP-depen 98.4 1.6E-07 5.5E-12 95.8 5.5 39 76-114 48-86 (604)
80 1ypw_A Transitional endoplasmi 98.4 7.5E-08 2.6E-12 101.4 2.8 134 88-233 511-657 (806)
81 1fnn_A CDC6P, cell division co 98.4 1.5E-06 5.2E-11 83.1 10.5 126 91-234 47-203 (389)
82 1ixz_A ATP-dependent metallopr 98.3 5.5E-07 1.9E-11 81.4 6.8 129 89-233 50-195 (254)
83 1iy2_A ATP-dependent metallopr 98.3 1.4E-06 4.8E-11 79.9 8.6 128 90-233 75-219 (278)
84 2kjq_A DNAA-related protein; s 98.2 6.2E-06 2.1E-10 68.3 10.3 103 88-218 36-141 (149)
85 1ypw_A Transitional endoplasmi 98.2 1.2E-06 4.1E-11 92.2 6.8 127 88-233 238-381 (806)
86 1sxj_E Activator 1 40 kDa subu 98.2 5.5E-06 1.9E-10 78.4 10.1 119 91-234 39-203 (354)
87 2gno_A DNA polymerase III, gam 98.2 8.8E-06 3E-10 75.7 10.9 132 77-235 5-150 (305)
88 2qby_A CDC6 homolog 1, cell di 98.1 3.7E-06 1.3E-10 80.1 7.6 124 90-234 47-207 (386)
89 1tue_A Replication protein E1; 98.0 1.6E-05 5.5E-10 69.0 8.8 115 91-223 61-178 (212)
90 1g41_A Heat shock protein HSLU 97.8 0.00011 3.8E-09 71.4 12.1 37 89-125 51-87 (444)
91 2c9o_A RUVB-like 1; hexameric 97.8 1.6E-05 5.3E-10 78.3 5.5 66 90-155 65-141 (456)
92 2w58_A DNAI, primosome compone 97.7 2.3E-05 7.9E-10 67.9 4.6 79 74-153 34-128 (202)
93 3ec2_A DNA replication protein 97.7 0.00011 3.8E-09 62.4 8.6 79 71-151 16-111 (180)
94 2qgz_A Helicase loader, putati 97.1 0.00029 1E-08 65.4 3.6 76 76-152 135-226 (308)
95 2qen_A Walker-type ATPase; unk 97.0 0.00097 3.3E-08 62.2 6.3 44 78-123 21-64 (350)
96 1w5s_A Origin recognition comp 96.9 0.00068 2.3E-08 65.0 4.8 39 91-129 53-102 (412)
97 2fna_A Conserved hypothetical 96.7 0.0021 7.1E-08 60.1 6.6 34 90-123 32-65 (357)
98 1u0j_A DNA replication protein 96.7 0.0023 8E-08 57.7 6.4 113 90-222 106-228 (267)
99 2orw_A Thymidine kinase; TMTK, 96.5 0.002 6.8E-08 55.0 4.3 68 92-159 7-95 (184)
100 3upu_A ATP-dependent DNA helic 96.5 0.0041 1.4E-07 60.9 6.9 43 70-112 26-69 (459)
101 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0064 2.2E-07 56.4 7.6 63 91-154 126-196 (331)
102 1kag_A SKI, shikimate kinase I 96.4 0.0012 4.2E-08 55.1 2.2 29 88-116 4-32 (173)
103 1qhx_A CPT, protein (chloramph 96.4 0.0015 5.1E-08 54.9 2.7 30 91-120 6-35 (178)
104 3vaa_A Shikimate kinase, SK; s 96.3 0.0011 3.8E-08 57.1 1.7 31 87-117 24-54 (199)
105 3trf_A Shikimate kinase, SK; a 96.2 0.0018 6.1E-08 54.8 2.2 28 90-117 7-34 (185)
106 4eun_A Thermoresistant glucoki 96.1 0.0018 6E-08 55.9 1.7 27 90-116 31-57 (200)
107 2r2a_A Uncharacterized protein 96.1 0.0042 1.4E-07 53.7 4.0 62 91-152 8-99 (199)
108 3kb2_A SPBC2 prophage-derived 96.0 0.0029 9.8E-08 52.6 2.5 27 91-117 4-30 (173)
109 1via_A Shikimate kinase; struc 95.9 0.0033 1.1E-07 52.8 2.6 28 90-117 6-33 (175)
110 2iyv_A Shikimate kinase, SK; t 95.9 0.0029 9.9E-08 53.5 2.1 27 91-117 5-31 (184)
111 3cm0_A Adenylate kinase; ATP-b 95.8 0.0024 8.2E-08 54.0 1.3 27 90-116 6-32 (186)
112 1zuh_A Shikimate kinase; alpha 95.8 0.004 1.4E-07 51.8 2.6 27 91-117 10-36 (168)
113 2c95_A Adenylate kinase 1; tra 95.8 0.0032 1.1E-07 53.6 2.0 29 89-117 10-38 (196)
114 1e6c_A Shikimate kinase; phosp 95.8 0.0036 1.2E-07 52.2 2.2 28 90-117 4-31 (173)
115 3iij_A Coilin-interacting nucl 95.7 0.0037 1.3E-07 52.6 2.1 29 89-117 12-40 (180)
116 2bwj_A Adenylate kinase 5; pho 95.7 0.004 1.4E-07 53.1 2.1 32 86-117 10-41 (199)
117 1zd8_A GTP:AMP phosphotransfer 95.6 0.0029 9.9E-08 55.6 1.0 29 89-117 8-36 (227)
118 2vli_A Antibiotic resistance p 95.5 0.0046 1.6E-07 52.0 2.1 27 91-117 8-34 (183)
119 2ze6_A Isopentenyl transferase 95.5 0.0046 1.6E-07 55.5 2.1 26 92-117 5-30 (253)
120 2rhm_A Putative kinase; P-loop 95.5 0.0046 1.6E-07 52.5 2.0 28 91-118 8-35 (193)
121 2cdn_A Adenylate kinase; phosp 95.5 0.0046 1.6E-07 53.1 1.8 27 91-117 23-49 (201)
122 3t61_A Gluconokinase; PSI-biol 95.5 0.0053 1.8E-07 52.8 2.2 27 90-116 20-46 (202)
123 1knq_A Gluconate kinase; ALFA/ 95.4 0.0063 2.2E-07 50.9 2.5 26 91-116 11-36 (175)
124 3nwj_A ATSK2; P loop, shikimat 95.4 0.0071 2.4E-07 54.2 2.8 31 88-118 48-78 (250)
125 3lw7_A Adenylate kinase relate 95.4 0.0072 2.5E-07 50.0 2.6 27 91-118 4-30 (179)
126 2pt5_A Shikimate kinase, SK; a 95.3 0.0075 2.6E-07 50.0 2.6 27 91-117 3-29 (168)
127 4b3f_X DNA-binding protein smu 95.3 0.012 4.2E-07 60.2 4.6 38 73-110 190-227 (646)
128 1tev_A UMP-CMP kinase; ploop, 95.3 0.0076 2.6E-07 51.0 2.5 27 91-117 6-32 (196)
129 1kht_A Adenylate kinase; phosp 95.2 0.0063 2.2E-07 51.4 1.8 24 90-113 5-28 (192)
130 1zak_A Adenylate kinase; ATP:A 95.2 0.0043 1.5E-07 54.2 0.8 26 90-115 7-32 (222)
131 3fb4_A Adenylate kinase; psych 95.2 0.0078 2.7E-07 52.2 2.4 27 91-117 3-29 (216)
132 1aky_A Adenylate kinase; ATP:A 95.2 0.0065 2.2E-07 53.0 1.9 27 91-117 7-33 (220)
133 2cvh_A DNA repair and recombin 95.2 0.022 7.6E-07 49.2 5.3 44 91-134 23-66 (220)
134 1svm_A Large T antigen; AAA+ f 95.2 0.014 4.9E-07 55.5 4.3 62 88-154 169-230 (377)
135 1gvn_B Zeta; postsegregational 95.2 0.0088 3E-07 54.7 2.7 30 92-121 37-66 (287)
136 3e1s_A Exodeoxyribonuclease V, 95.1 0.015 5E-07 58.7 4.5 70 88-158 204-297 (574)
137 2jaq_A Deoxyguanosine kinase; 95.1 0.0089 3E-07 51.1 2.6 27 91-117 3-29 (205)
138 3dl0_A Adenylate kinase; phosp 95.1 0.0096 3.3E-07 51.7 2.6 27 91-117 3-29 (216)
139 1cke_A CK, MSSA, protein (cyti 95.1 0.0093 3.2E-07 52.0 2.5 26 91-116 8-33 (227)
140 1y63_A LMAJ004144AAA protein; 95.1 0.0078 2.7E-07 51.0 1.9 27 91-117 13-40 (184)
141 1qf9_A UMP/CMP kinase, protein 95.0 0.0085 2.9E-07 50.6 2.1 27 91-117 9-35 (194)
142 2pez_A Bifunctional 3'-phospho 95.0 0.013 4.6E-07 49.1 3.2 30 91-120 8-40 (179)
143 1ly1_A Polynucleotide kinase; 95.0 0.006 2.1E-07 51.0 0.9 25 91-115 5-30 (181)
144 3be4_A Adenylate kinase; malar 94.9 0.008 2.7E-07 52.4 1.7 28 91-118 8-35 (217)
145 1zp6_A Hypothetical protein AT 94.9 0.0071 2.4E-07 51.3 1.2 31 90-120 11-41 (191)
146 3zvl_A Bifunctional polynucleo 94.9 0.013 4.5E-07 56.6 3.2 58 92-151 262-319 (416)
147 3uie_A Adenylyl-sulfate kinase 94.9 0.014 4.9E-07 50.0 3.2 30 91-120 28-60 (200)
148 4e22_A Cytidylate kinase; P-lo 94.9 0.011 3.8E-07 52.9 2.5 27 91-117 30-56 (252)
149 1ak2_A Adenylate kinase isoenz 94.9 0.0096 3.3E-07 52.5 2.0 28 90-117 18-45 (233)
150 1jjv_A Dephospho-COA kinase; P 94.8 0.0093 3.2E-07 51.3 1.9 26 91-117 5-30 (206)
151 2b8t_A Thymidine kinase; deoxy 94.8 0.051 1.7E-06 47.7 6.6 69 92-160 16-109 (223)
152 1e4v_A Adenylate kinase; trans 94.8 0.01 3.4E-07 51.6 2.0 28 91-118 3-30 (214)
153 2xb4_A Adenylate kinase; ATP-b 94.8 0.012 4E-07 51.6 2.4 27 91-117 3-29 (223)
154 3sr0_A Adenylate kinase; phosp 94.8 0.012 4E-07 51.1 2.4 26 92-117 4-29 (206)
155 2z0h_A DTMP kinase, thymidylat 94.8 0.022 7.5E-07 48.3 4.1 30 92-121 4-36 (197)
156 1ukz_A Uridylate kinase; trans 94.8 0.012 4E-07 50.5 2.3 27 91-117 18-44 (203)
157 2p5t_B PEZT; postsegregational 94.8 0.0086 2.9E-07 53.6 1.5 30 92-121 36-65 (253)
158 3ake_A Cytidylate kinase; CMP 94.7 0.013 4.5E-07 50.2 2.5 27 91-117 5-31 (208)
159 2grj_A Dephospho-COA kinase; T 94.6 0.0085 2.9E-07 51.4 0.9 28 89-116 13-40 (192)
160 3d3q_A TRNA delta(2)-isopenten 94.5 0.013 4.5E-07 54.8 2.2 33 90-124 9-41 (340)
161 2pbr_A DTMP kinase, thymidylat 94.5 0.019 6.4E-07 48.5 3.0 29 92-120 4-35 (195)
162 3a4m_A L-seryl-tRNA(SEC) kinas 94.5 0.014 4.8E-07 52.5 2.3 30 91-120 7-39 (260)
163 3tlx_A Adenylate kinase 2; str 94.5 0.015 5.1E-07 51.7 2.4 27 91-117 32-58 (243)
164 2fz4_A DNA repair protein RAD2 94.5 0.031 1.1E-06 49.4 4.5 50 68-121 92-141 (237)
165 2if2_A Dephospho-COA kinase; a 94.4 0.014 4.7E-07 50.1 2.0 26 91-117 4-29 (204)
166 3crm_A TRNA delta(2)-isopenten 94.4 0.014 4.9E-07 54.2 2.1 30 90-119 7-36 (323)
167 3r20_A Cytidylate kinase; stru 94.4 0.017 5.9E-07 51.1 2.5 27 90-116 11-37 (233)
168 4hlc_A DTMP kinase, thymidylat 94.4 0.036 1.2E-06 48.0 4.5 32 90-121 4-37 (205)
169 2bbw_A Adenylate kinase 4, AK4 94.4 0.017 5.8E-07 51.3 2.5 27 90-116 29-55 (246)
170 1nks_A Adenylate kinase; therm 94.3 0.0079 2.7E-07 50.8 0.1 24 91-114 4-27 (194)
171 1ye8_A Protein THEP1, hypothet 94.3 0.018 6.3E-07 48.6 2.3 26 92-117 4-29 (178)
172 1n0w_A DNA repair protein RAD5 94.3 0.04 1.4E-06 48.3 4.6 44 91-134 27-79 (243)
173 3umf_A Adenylate kinase; rossm 94.3 0.018 6.1E-07 50.4 2.3 27 91-117 32-58 (217)
174 2v54_A DTMP kinase, thymidylat 94.3 0.016 5.5E-07 49.5 2.0 31 91-121 7-38 (204)
175 3v9p_A DTMP kinase, thymidylat 94.2 0.043 1.5E-06 48.3 4.7 32 91-122 28-66 (227)
176 2plr_A DTMP kinase, probable t 94.2 0.013 4.3E-07 50.4 1.2 25 91-115 7-31 (213)
177 1jr3_D DNA polymerase III, del 94.2 0.33 1.1E-05 45.1 11.1 130 92-242 22-163 (343)
178 1lvg_A Guanylate kinase, GMP k 94.2 0.013 4.6E-07 50.2 1.3 26 88-113 4-29 (198)
179 1ex7_A Guanylate kinase; subst 94.2 0.019 6.6E-07 48.9 2.2 33 89-121 2-35 (186)
180 2qor_A Guanylate kinase; phosp 94.1 0.011 3.7E-07 51.0 0.5 25 90-114 14-38 (204)
181 2ga8_A Hypothetical 39.9 kDa p 94.0 0.011 3.7E-07 55.6 0.4 45 74-118 8-54 (359)
182 1kgd_A CASK, peripheral plasma 94.0 0.013 4.4E-07 49.5 0.8 24 90-113 7-30 (180)
183 3fdi_A Uncharacterized protein 94.0 0.022 7.4E-07 49.2 2.2 27 91-117 9-35 (201)
184 4a74_A DNA repair and recombin 93.9 0.056 1.9E-06 46.9 4.9 44 91-134 28-80 (231)
185 3foz_A TRNA delta(2)-isopenten 93.9 0.029 9.9E-07 51.7 3.0 31 91-123 13-43 (316)
186 1vht_A Dephospho-COA kinase; s 93.9 0.024 8.1E-07 49.2 2.4 26 91-117 7-32 (218)
187 3tr0_A Guanylate kinase, GMP k 93.9 0.013 4.5E-07 50.1 0.6 24 90-113 9-32 (205)
188 3a8t_A Adenylate isopentenyltr 93.7 0.015 5.1E-07 54.3 0.7 32 91-124 43-74 (339)
189 3cmu_A Protein RECA, recombina 93.7 0.21 7.1E-06 56.9 9.9 89 87-175 1426-1554(2050)
190 3exa_A TRNA delta(2)-isopenten 93.7 0.026 8.9E-07 52.1 2.3 31 91-123 6-36 (322)
191 2bdt_A BH3686; alpha-beta prot 93.6 0.031 1E-06 47.3 2.5 24 91-114 5-28 (189)
192 1uj2_A Uridine-cytidine kinase 93.6 0.028 9.7E-07 50.1 2.4 33 91-123 25-65 (252)
193 2oap_1 GSPE-2, type II secreti 93.6 0.02 6.9E-07 56.7 1.5 44 77-120 249-294 (511)
194 1z6g_A Guanylate kinase; struc 93.5 0.021 7.2E-07 49.8 1.3 28 85-112 20-47 (218)
195 1w36_D RECD, exodeoxyribonucle 93.5 0.086 2.9E-06 53.4 6.0 25 88-112 164-188 (608)
196 1znw_A Guanylate kinase, GMP k 93.5 0.018 6.1E-07 49.7 0.8 30 84-113 16-45 (207)
197 1uf9_A TT1252 protein; P-loop, 93.5 0.025 8.5E-07 48.2 1.7 26 91-117 11-36 (203)
198 2h92_A Cytidylate kinase; ross 93.4 0.034 1.2E-06 48.1 2.5 28 90-117 5-32 (219)
199 3tau_A Guanylate kinase, GMP k 93.4 0.022 7.6E-07 49.2 1.2 24 91-114 11-34 (208)
200 3c8u_A Fructokinase; YP_612366 93.3 0.031 1E-06 48.2 2.1 30 92-121 26-58 (208)
201 2zr9_A Protein RECA, recombina 93.3 0.45 1.6E-05 44.5 10.3 63 91-153 64-152 (349)
202 3dm5_A SRP54, signal recogniti 93.3 0.27 9.3E-06 47.5 8.9 34 92-125 104-140 (443)
203 2z43_A DNA repair and recombin 93.3 0.076 2.6E-06 49.3 4.9 44 92-135 111-163 (324)
204 2qmh_A HPR kinase/phosphorylas 93.3 0.02 6.8E-07 49.3 0.7 26 88-113 34-59 (205)
205 3a00_A Guanylate kinase, GMP k 93.3 0.023 8E-07 48.1 1.2 23 91-113 4-26 (186)
206 1q3t_A Cytidylate kinase; nucl 93.3 0.037 1.3E-06 48.8 2.5 27 91-117 19-45 (236)
207 2jeo_A Uridine-cytidine kinase 93.2 0.018 6.1E-07 51.2 0.3 26 90-115 27-52 (245)
208 1xx6_A Thymidine kinase; NESG, 93.1 0.14 4.9E-06 43.6 5.9 67 92-158 12-99 (191)
209 2yvu_A Probable adenylyl-sulfa 93.0 0.056 1.9E-06 45.5 3.2 30 91-120 16-48 (186)
210 4b4t_J 26S protease regulatory 93.0 0.067 2.3E-06 51.1 4.0 22 362-383 172-195 (405)
211 3hjn_A DTMP kinase, thymidylat 92.9 0.16 5.3E-06 43.5 5.9 36 92-127 4-42 (197)
212 3asz_A Uridine kinase; cytidin 92.9 0.029 9.8E-07 48.3 1.2 30 91-120 9-38 (211)
213 1xjc_A MOBB protein homolog; s 92.8 0.075 2.6E-06 44.4 3.6 33 92-124 8-43 (169)
214 2j41_A Guanylate kinase; GMP, 92.8 0.018 6.1E-07 49.3 -0.2 23 90-112 8-30 (207)
215 1c9k_A COBU, adenosylcobinamid 92.8 0.067 2.3E-06 45.2 3.3 56 92-148 3-59 (180)
216 2wwf_A Thymidilate kinase, put 92.7 0.027 9.2E-07 48.4 0.8 25 91-115 13-37 (212)
217 3ney_A 55 kDa erythrocyte memb 92.7 0.029 9.8E-07 48.3 0.9 23 91-113 22-44 (197)
218 3gmt_A Adenylate kinase; ssgci 92.6 0.054 1.8E-06 47.7 2.6 27 91-117 11-37 (230)
219 1v5w_A DMC1, meiotic recombina 92.6 0.12 4.3E-06 48.2 5.3 44 92-135 126-178 (343)
220 1s96_A Guanylate kinase, GMP k 92.5 0.03 1E-06 49.0 0.9 25 89-113 17-41 (219)
221 1rz3_A Hypothetical protein rb 92.4 0.06 2.1E-06 46.1 2.6 31 91-121 25-58 (201)
222 1htw_A HI0065; nucleotide-bind 92.4 0.029 1E-06 46.4 0.6 22 91-112 36-57 (158)
223 1nn5_A Similar to deoxythymidy 92.3 0.032 1.1E-06 48.0 0.8 24 91-114 12-35 (215)
224 1a7j_A Phosphoribulokinase; tr 92.3 0.047 1.6E-06 49.9 1.8 35 91-125 8-45 (290)
225 3hdt_A Putative kinase; struct 92.2 0.055 1.9E-06 47.4 2.2 27 91-117 17-43 (223)
226 1vma_A Cell division protein F 92.2 0.065 2.2E-06 49.4 2.7 32 92-123 108-142 (306)
227 2w0m_A SSO2452; RECA, SSPF, un 92.2 0.089 3.1E-06 45.5 3.5 32 91-122 26-60 (235)
228 3b85_A Phosphate starvation-in 92.2 0.059 2E-06 46.7 2.2 30 82-111 16-45 (208)
229 3kl4_A SRP54, signal recogniti 92.1 0.073 2.5E-06 51.5 3.0 33 92-124 101-136 (433)
230 1m7g_A Adenylylsulfate kinase; 92.0 0.064 2.2E-06 46.2 2.3 32 89-120 26-61 (211)
231 2v9p_A Replication protein E1; 91.9 0.042 1.4E-06 50.6 1.1 28 85-112 123-150 (305)
232 2eyu_A Twitching motility prot 91.9 0.048 1.6E-06 49.1 1.4 23 90-112 27-49 (261)
233 1pzn_A RAD51, DNA repair and r 91.9 0.15 5E-06 47.9 4.9 43 92-134 135-186 (349)
234 2gza_A Type IV secretion syste 91.9 0.051 1.7E-06 51.4 1.6 35 79-113 166-200 (361)
235 3kta_A Chromosome segregation 91.8 0.046 1.6E-06 45.8 1.1 22 92-113 30-51 (182)
236 4edh_A DTMP kinase, thymidylat 91.8 0.23 7.8E-06 43.1 5.6 49 90-141 8-59 (213)
237 2qt1_A Nicotinamide riboside k 91.8 0.036 1.2E-06 47.6 0.4 30 91-122 24-54 (207)
238 3eph_A TRNA isopentenyltransfe 91.7 0.076 2.6E-06 50.7 2.6 31 91-123 5-35 (409)
239 2f6r_A COA synthase, bifunctio 91.7 0.065 2.2E-06 48.7 2.0 25 91-116 78-102 (281)
240 1yrb_A ATP(GTP)binding protein 91.6 0.11 3.8E-06 46.1 3.5 33 93-125 19-53 (262)
241 1ltq_A Polynucleotide kinase; 91.5 0.058 2E-06 49.2 1.5 25 91-115 5-30 (301)
242 2px0_A Flagellar biosynthesis 91.5 0.1 3.5E-06 47.8 3.2 34 91-124 108-145 (296)
243 2i3b_A HCR-ntpase, human cance 91.4 0.062 2.1E-06 45.8 1.4 22 91-112 4-25 (189)
244 3p32_A Probable GTPase RV1496/ 91.3 0.1 3.6E-06 49.0 3.1 37 91-127 82-121 (355)
245 2pt7_A CAG-ALFA; ATPase, prote 91.3 0.054 1.8E-06 50.5 1.1 44 78-121 161-206 (330)
246 1xp8_A RECA protein, recombina 91.3 1.3 4.4E-05 41.7 10.6 37 91-127 77-116 (366)
247 1ko7_A HPR kinase/phosphatase; 91.1 0.12 4E-06 47.7 3.2 48 67-115 106-170 (314)
248 3lnc_A Guanylate kinase, GMP k 91.0 0.057 1.9E-06 47.3 0.9 23 91-113 30-53 (231)
249 2gk6_A Regulator of nonsense t 90.9 0.094 3.2E-06 53.3 2.5 38 74-112 182-219 (624)
250 1j8m_F SRP54, signal recogniti 90.7 0.18 6.3E-06 46.1 4.0 35 92-126 102-139 (297)
251 4b4t_M 26S protease regulatory 90.5 0.065 2.2E-06 51.8 0.8 22 362-383 205-228 (434)
252 2dr3_A UPF0273 protein PH0284; 90.5 0.14 4.8E-06 44.8 3.0 33 91-123 26-61 (247)
253 2ehv_A Hypothetical protein PH 90.5 0.08 2.7E-06 46.5 1.4 35 87-121 29-67 (251)
254 2v3c_C SRP54, signal recogniti 90.5 0.12 4.3E-06 49.9 2.8 33 92-124 103-138 (432)
255 3b9q_A Chloroplast SRP recepto 90.4 0.094 3.2E-06 48.2 1.8 21 92-112 104-124 (302)
256 4gp7_A Metallophosphoesterase; 90.4 0.1 3.4E-06 43.5 1.8 17 91-107 12-28 (171)
257 3jvv_A Twitching mobility prot 90.4 0.082 2.8E-06 49.8 1.4 22 91-112 126-147 (356)
258 1rj9_A FTSY, signal recognitio 90.3 0.094 3.2E-06 48.3 1.7 32 91-122 105-139 (304)
259 2i1q_A DNA repair and recombin 90.3 0.23 7.7E-06 45.8 4.4 44 92-135 102-164 (322)
260 2xxa_A Signal recognition part 90.3 0.16 5.3E-06 49.2 3.3 35 92-126 104-142 (433)
261 3hr8_A Protein RECA; alpha and 90.3 0.26 8.8E-06 46.4 4.7 37 92-128 65-104 (356)
262 3tqc_A Pantothenate kinase; bi 90.2 0.1 3.6E-06 48.3 1.9 32 92-123 96-132 (321)
263 3aez_A Pantothenate kinase; tr 90.0 0.11 3.6E-06 48.1 1.8 22 92-113 94-115 (312)
264 3vkw_A Replicase large subunit 90.0 0.1 3.4E-06 50.5 1.7 65 93-160 166-254 (446)
265 4b4t_L 26S protease subunit RP 90.0 0.075 2.6E-06 51.4 0.8 22 362-383 205-228 (437)
266 4b4t_K 26S protease regulatory 90.0 0.078 2.7E-06 51.2 0.9 22 362-383 196-219 (428)
267 1gtv_A TMK, thymidylate kinase 90.0 0.033 1.1E-06 47.9 -1.6 23 92-114 4-26 (214)
268 4eaq_A DTMP kinase, thymidylat 90.0 0.12 3.9E-06 45.5 1.9 50 90-142 28-79 (229)
269 2ewv_A Twitching motility prot 89.9 0.09 3.1E-06 49.9 1.3 22 91-112 139-160 (372)
270 1zu4_A FTSY; GTPase, signal re 89.8 0.2 6.7E-06 46.5 3.4 33 92-124 109-144 (320)
271 1cr0_A DNA primase/helicase; R 89.8 0.15 5.1E-06 46.4 2.6 35 88-122 35-73 (296)
272 2r8r_A Sensor protein; KDPD, P 89.8 0.3 1E-05 42.8 4.4 39 91-129 9-50 (228)
273 3e70_C DPA, signal recognition 89.7 0.11 3.9E-06 48.3 1.8 32 91-122 132-166 (328)
274 1odf_A YGR205W, hypothetical 3 89.7 0.094 3.2E-06 47.9 1.2 23 92-114 35-57 (290)
275 2j37_W Signal recognition part 89.7 0.15 5E-06 50.4 2.6 34 92-125 105-141 (504)
276 1g8f_A Sulfate adenylyltransfe 89.6 0.3 1E-05 48.2 4.8 56 91-149 398-458 (511)
277 1x6v_B Bifunctional 3'-phospho 89.6 0.16 5.5E-06 51.4 2.9 29 91-119 55-86 (630)
278 3io5_A Recombination and repai 89.4 0.3 1E-05 45.1 4.3 39 92-130 32-75 (333)
279 1np6_A Molybdopterin-guanine d 89.4 0.13 4.6E-06 43.1 1.8 32 91-122 9-43 (174)
280 1sq5_A Pantothenate kinase; P- 89.4 0.11 3.9E-06 47.7 1.5 23 91-113 83-105 (308)
281 2j9r_A Thymidine kinase; TK1, 89.3 0.64 2.2E-05 40.3 6.1 66 93-158 33-119 (214)
282 1p9r_A General secretion pathw 89.1 0.13 4.5E-06 49.5 1.7 23 91-113 170-192 (418)
283 1u94_A RECA protein, recombina 89.0 0.33 1.1E-05 45.7 4.4 38 91-128 66-106 (356)
284 3lda_A DNA repair protein RAD5 89.0 0.38 1.3E-05 46.0 4.9 44 91-134 181-233 (400)
285 2wjy_A Regulator of nonsense t 88.9 0.17 5.7E-06 53.0 2.5 37 75-112 359-395 (800)
286 2og2_A Putative signal recogni 88.9 0.14 4.9E-06 48.2 1.8 30 92-121 161-193 (359)
287 1d2n_A N-ethylmaleimide-sensit 88.7 0.29 1E-05 43.7 3.7 14 370-383 64-77 (272)
288 3tif_A Uncharacterized ABC tra 88.6 0.11 3.8E-06 45.8 0.8 25 88-112 31-55 (235)
289 2onk_A Molybdate/tungstate ABC 88.6 0.14 4.7E-06 45.4 1.4 24 89-112 25-48 (240)
290 1f2t_A RAD50 ABC-ATPase; DNA d 88.5 0.15 5E-06 41.5 1.4 21 92-112 27-47 (149)
291 2axn_A 6-phosphofructo-2-kinas 88.4 0.19 6.6E-06 49.8 2.5 31 91-121 38-71 (520)
292 4b4t_I 26S protease regulatory 88.3 0.12 4.1E-06 49.7 0.8 22 362-383 206-229 (437)
293 2zts_A Putative uncharacterize 88.3 0.33 1.1E-05 42.4 3.7 39 92-132 34-76 (251)
294 3cmw_A Protein RECA, recombina 88.1 0.41 1.4E-05 53.8 5.0 35 91-125 1085-1122(1706)
295 3tmk_A Thymidylate kinase; pho 88.1 0.25 8.7E-06 42.9 2.7 32 91-122 8-39 (216)
296 2f1r_A Molybdopterin-guanine d 88.0 0.075 2.6E-06 44.5 -0.7 23 91-113 5-27 (171)
297 3tqf_A HPR(Ser) kinase; transf 88.0 0.13 4.6E-06 43.0 0.9 27 88-115 16-42 (181)
298 2pcj_A ABC transporter, lipopr 88.0 0.12 4E-06 45.3 0.5 25 88-112 30-54 (224)
299 4b4t_H 26S protease regulatory 88.0 0.11 3.8E-06 50.4 0.4 22 362-383 233-256 (467)
300 3sop_A Neuronal-specific septi 87.9 0.16 5.3E-06 45.9 1.3 22 91-112 5-26 (270)
301 4i1u_A Dephospho-COA kinase; s 87.8 0.24 8.2E-06 42.9 2.4 27 90-117 11-37 (210)
302 1lw7_A Transcriptional regulat 87.7 0.15 5.2E-06 48.0 1.2 25 91-115 173-197 (365)
303 2xzl_A ATP-dependent helicase 87.7 0.31 1.1E-05 51.0 3.6 31 91-121 378-412 (802)
304 1p5z_B DCK, deoxycytidine kina 87.7 0.05 1.7E-06 48.7 -2.1 23 91-113 27-49 (263)
305 1sgw_A Putative ABC transporte 87.5 0.085 2.9E-06 45.9 -0.7 26 87-112 34-59 (214)
306 1b0u_A Histidine permease; ABC 87.4 0.15 5E-06 45.8 0.9 25 88-112 32-56 (262)
307 2cbz_A Multidrug resistance-as 87.3 0.15 5.1E-06 45.1 0.8 26 87-112 30-55 (237)
308 4g1u_C Hemin import ATP-bindin 87.3 0.15 5.3E-06 45.8 0.9 26 87-112 36-61 (266)
309 1nlf_A Regulatory protein REPA 87.3 0.16 5.4E-06 45.8 1.0 24 89-112 31-54 (279)
310 3gfo_A Cobalt import ATP-bindi 87.2 0.15 5.3E-06 46.1 0.9 26 87-112 33-58 (275)
311 2p67_A LAO/AO transport system 87.2 0.32 1.1E-05 45.3 3.1 35 92-126 60-97 (341)
312 2f9l_A RAB11B, member RAS onco 87.2 0.15 5.3E-06 43.1 0.8 21 91-111 8-28 (199)
313 3llm_A ATP-dependent RNA helic 87.2 0.19 6.4E-06 44.1 1.3 25 83-107 71-95 (235)
314 1g6h_A High-affinity branched- 87.1 0.16 5.3E-06 45.5 0.8 26 87-112 32-57 (257)
315 2d2e_A SUFC protein; ABC-ATPas 86.9 0.19 6.6E-06 44.7 1.3 25 87-111 28-52 (250)
316 3rlf_A Maltose/maltodextrin im 86.8 0.2 6.7E-06 47.6 1.4 25 88-112 29-53 (381)
317 1ls1_A Signal recognition part 86.8 0.44 1.5E-05 43.5 3.7 34 92-125 102-138 (295)
318 3cmu_A Protein RECA, recombina 86.8 2.4 8.1E-05 48.5 10.2 91 87-177 1080-1210(2050)
319 3bh0_A DNAB-like replicative h 86.8 0.32 1.1E-05 44.8 2.8 41 88-130 68-111 (315)
320 3fvq_A Fe(3+) IONS import ATP- 86.8 0.17 5.9E-06 47.6 0.9 25 88-112 30-54 (359)
321 2wsm_A Hydrogenase expression/ 86.7 0.37 1.3E-05 41.3 3.0 36 91-126 33-70 (221)
322 2zu0_C Probable ATP-dependent 86.7 0.2 7E-06 45.0 1.4 26 87-112 45-70 (267)
323 1mv5_A LMRA, multidrug resista 86.7 0.17 5.9E-06 44.8 0.9 26 87-112 27-52 (243)
324 2npi_A Protein CLP1; CLP1-PCF1 86.7 0.14 4.7E-06 50.0 0.2 25 88-112 138-162 (460)
325 1ji0_A ABC transporter; ATP bi 86.7 0.17 5.8E-06 44.7 0.8 25 88-112 32-56 (240)
326 2pze_A Cystic fibrosis transme 86.6 0.18 6E-06 44.3 0.9 26 87-112 33-58 (229)
327 3syl_A Protein CBBX; photosynt 86.6 0.48 1.6E-05 43.0 3.8 12 372-383 69-80 (309)
328 2yhs_A FTSY, cell division pro 86.5 0.23 8E-06 48.7 1.8 31 92-122 297-330 (503)
329 2ff7_A Alpha-hemolysin translo 86.5 0.18 6E-06 44.9 0.8 26 87-112 34-59 (247)
330 1z47_A CYSA, putative ABC-tran 86.5 0.21 7.1E-06 47.0 1.3 25 88-112 41-65 (355)
331 2qm8_A GTPase/ATPase; G protei 86.4 0.38 1.3E-05 44.8 3.2 32 91-122 58-92 (337)
332 3cmw_A Protein RECA, recombina 86.4 2.9 9.8E-05 47.1 10.5 66 90-155 36-127 (1706)
333 2olj_A Amino acid ABC transpor 86.4 0.18 6.2E-06 45.3 0.9 25 88-112 50-74 (263)
334 2it1_A 362AA long hypothetical 86.4 0.21 7.3E-06 47.0 1.4 24 89-112 30-53 (362)
335 3qks_A DNA double-strand break 86.4 0.18 6.2E-06 43.3 0.8 24 92-115 27-50 (203)
336 2ffh_A Protein (FFH); SRP54, s 86.3 0.46 1.6E-05 45.8 3.7 34 92-125 102-138 (425)
337 1iy2_A ATP-dependent metallopr 86.3 0.51 1.8E-05 42.3 3.8 15 369-383 72-86 (278)
338 1tue_A Replication protein E1; 86.3 0.25 8.7E-06 42.6 1.6 14 370-383 58-71 (212)
339 2yyz_A Sugar ABC transporter, 86.2 0.22 7.5E-06 46.9 1.3 24 89-112 30-53 (359)
340 2oze_A ORF delta'; para, walke 86.1 0.71 2.4E-05 41.7 4.8 32 95-126 44-78 (298)
341 2dyk_A GTP-binding protein; GT 86.1 0.19 6.6E-06 40.4 0.8 20 91-110 4-23 (161)
342 1qhl_A Protein (cell division 86.1 0.15 5.3E-06 44.7 0.2 22 92-113 31-52 (227)
343 1vpl_A ABC transporter, ATP-bi 86.0 0.2 6.7E-06 44.9 0.9 25 88-112 41-65 (256)
344 1w4r_A Thymidine kinase; type 86.0 1.7 5.8E-05 37.0 6.7 64 92-156 24-106 (195)
345 1m8p_A Sulfate adenylyltransfe 86.0 0.31 1.1E-05 48.9 2.4 29 92-120 400-432 (573)
346 2qi9_C Vitamin B12 import ATP- 86.0 0.2 6.8E-06 44.6 0.9 23 90-112 28-50 (249)
347 1oix_A RAS-related protein RAB 85.9 0.22 7.7E-06 41.9 1.2 23 90-112 31-53 (191)
348 1v43_A Sugar-binding transport 85.9 0.24 8.1E-06 46.9 1.4 25 88-112 37-61 (372)
349 2ocp_A DGK, deoxyguanosine kin 85.8 0.3 1E-05 42.9 2.0 23 91-113 5-27 (241)
350 2ghi_A Transport protein; mult 85.8 0.2 6.9E-06 44.9 0.8 26 87-112 45-70 (260)
351 2ihy_A ABC transporter, ATP-bi 85.6 0.21 7.1E-06 45.3 0.9 26 87-112 46-71 (279)
352 1g29_1 MALK, maltose transport 85.6 0.24 8.3E-06 46.9 1.3 25 88-112 29-53 (372)
353 2nq2_C Hypothetical ABC transp 85.4 0.21 7.3E-06 44.5 0.8 26 87-112 30-55 (253)
354 2ixe_A Antigen peptide transpo 85.4 0.21 7.3E-06 45.0 0.8 26 87-112 44-69 (271)
355 2yz2_A Putative ABC transporte 85.3 0.22 7.4E-06 44.8 0.8 25 88-112 33-57 (266)
356 1tq4_A IIGP1, interferon-induc 85.1 0.31 1.1E-05 46.8 1.8 23 90-112 71-93 (413)
357 1z2a_A RAS-related protein RAB 85.1 0.23 7.8E-06 40.2 0.8 21 90-110 7-27 (168)
358 2www_A Methylmalonic aciduria 84.9 0.59 2E-05 43.7 3.6 35 91-125 77-114 (349)
359 2zej_A Dardarin, leucine-rich 84.7 0.19 6.6E-06 41.9 0.1 20 91-110 5-24 (184)
360 1kao_A RAP2A; GTP-binding prot 84.7 0.25 8.4E-06 39.8 0.8 21 90-110 5-25 (167)
361 2pjz_A Hypothetical protein ST 84.7 0.24 8.4E-06 44.4 0.9 25 88-112 30-54 (263)
362 3b6e_A Interferon-induced heli 84.6 0.33 1.1E-05 41.3 1.6 40 67-110 31-70 (216)
363 2obl_A ESCN; ATPase, hydrolase 84.5 0.45 1.5E-05 44.5 2.6 30 87-116 70-99 (347)
364 2ged_A SR-beta, signal recogni 84.4 0.26 8.8E-06 41.2 0.8 21 91-111 51-71 (193)
365 1nrj_B SR-beta, signal recogni 84.4 0.25 8.6E-06 42.3 0.8 22 91-112 15-36 (218)
366 2wji_A Ferrous iron transport 84.4 0.31 1.1E-05 39.7 1.3 20 91-110 6-25 (165)
367 2r6a_A DNAB helicase, replicat 84.2 0.33 1.1E-05 47.2 1.6 39 90-130 205-247 (454)
368 3gd7_A Fusion complex of cysti 84.2 0.27 9.3E-06 46.8 0.9 26 87-112 46-71 (390)
369 3d31_A Sulfate/molybdate ABC t 84.2 0.2 6.9E-06 46.9 0.0 25 88-112 26-50 (348)
370 1ixz_A ATP-dependent metallopr 84.2 0.26 9E-06 43.5 0.8 16 368-383 47-62 (254)
371 2wjg_A FEOB, ferrous iron tran 84.1 0.25 8.5E-06 41.0 0.6 20 91-110 10-29 (188)
372 1ek0_A Protein (GTP-binding pr 84.0 0.27 9.3E-06 39.7 0.8 20 91-110 6-25 (170)
373 2ce2_X GTPase HRAS; signaling 84.0 0.24 8.1E-06 39.8 0.4 21 91-111 6-26 (166)
374 2nzj_A GTP-binding protein REM 83.9 0.26 9E-06 40.2 0.6 21 90-110 6-26 (175)
375 1e69_A Chromosome segregation 83.8 0.34 1.2E-05 44.7 1.4 24 91-114 27-50 (322)
376 1z08_A RAS-related protein RAB 83.8 0.29 9.9E-06 39.7 0.9 22 90-111 8-29 (170)
377 4tmk_A Protein (thymidylate ki 83.8 0.26 8.7E-06 42.8 0.5 23 90-112 5-27 (213)
378 1wms_A RAB-9, RAB9, RAS-relate 83.8 0.29 9.8E-06 40.1 0.8 21 90-110 9-29 (177)
379 3lv8_A DTMP kinase, thymidylat 83.7 0.25 8.6E-06 43.6 0.5 48 89-139 28-79 (236)
380 1u8z_A RAS-related protein RAL 83.7 0.28 9.7E-06 39.5 0.8 20 91-110 7-26 (168)
381 1z0j_A RAB-22, RAS-related pro 83.7 0.29 9.9E-06 39.6 0.8 22 90-111 8-29 (170)
382 3cr8_A Sulfate adenylyltranfer 83.7 0.16 5.4E-06 50.8 -1.0 24 90-113 371-394 (552)
383 1ky3_A GTP-binding protein YPT 83.5 0.3 1E-05 40.1 0.8 21 90-110 10-30 (182)
384 2dpy_A FLII, flagellum-specifi 83.4 0.28 9.4E-06 47.6 0.6 30 87-116 156-185 (438)
385 3qf7_A RAD50; ABC-ATPase, ATPa 83.3 0.36 1.2E-05 45.5 1.4 21 92-112 27-47 (365)
386 3pfi_A Holliday junction ATP-d 83.2 0.78 2.7E-05 42.2 3.7 13 371-383 56-68 (338)
387 2w58_A DNAI, primosome compone 83.2 0.8 2.8E-05 38.6 3.5 13 371-383 55-67 (202)
388 2z0m_A 337AA long hypothetical 83.2 0.79 2.7E-05 41.7 3.7 45 71-119 18-62 (337)
389 3tui_C Methionine import ATP-b 83.2 0.37 1.3E-05 45.4 1.4 26 88-113 54-79 (366)
390 1c1y_A RAS-related protein RAP 83.1 0.31 1.1E-05 39.3 0.8 20 91-110 6-25 (167)
391 1g16_A RAS-related protein SEC 83.0 0.27 9.4E-06 39.8 0.4 20 91-110 6-25 (170)
392 1r2q_A RAS-related protein RAB 83.0 0.32 1.1E-05 39.3 0.8 21 90-110 8-28 (170)
393 3q85_A GTP-binding protein REM 82.9 0.3 1E-05 39.6 0.6 19 91-109 5-23 (169)
394 2vp4_A Deoxynucleoside kinase; 82.8 0.31 1.1E-05 42.5 0.7 21 91-111 23-43 (230)
395 2erx_A GTP-binding protein DI- 82.8 0.31 1.1E-05 39.5 0.6 21 90-110 5-25 (172)
396 1r8s_A ADP-ribosylation factor 82.6 0.33 1.1E-05 39.1 0.8 20 91-110 3-22 (164)
397 3ld9_A DTMP kinase, thymidylat 82.6 0.38 1.3E-05 42.0 1.1 28 91-118 24-55 (223)
398 1oxx_K GLCV, glucose, ABC tran 82.6 0.2 6.8E-06 47.1 -0.7 24 89-112 32-55 (353)
399 3bos_A Putative DNA replicatio 82.5 0.66 2.3E-05 39.9 2.7 14 370-383 52-65 (242)
400 2rcn_A Probable GTPase ENGC; Y 82.5 0.4 1.4E-05 45.0 1.4 24 88-111 215-238 (358)
401 1nij_A Hypothetical protein YJ 82.3 0.55 1.9E-05 43.3 2.2 29 92-120 8-37 (318)
402 2qag_B Septin-6, protein NEDD5 82.3 0.28 9.7E-06 47.2 0.2 21 91-111 45-65 (427)
403 3cf0_A Transitional endoplasmi 82.2 0.34 1.2E-05 44.2 0.7 16 368-383 47-62 (301)
404 2q6t_A DNAB replication FORK h 82.2 0.39 1.3E-05 46.5 1.2 42 91-134 203-249 (444)
405 1bif_A 6-phosphofructo-2-kinas 82.2 0.31 1.1E-05 47.6 0.5 31 90-120 41-74 (469)
406 3bc1_A RAS-related protein RAB 82.1 0.35 1.2E-05 40.0 0.8 21 90-110 13-33 (195)
407 2bbs_A Cystic fibrosis transme 82.1 0.31 1.1E-05 44.4 0.4 25 88-112 64-88 (290)
408 3fwy_A Light-independent proto 82.0 0.88 3E-05 41.9 3.5 38 91-128 51-91 (314)
409 2lkc_A Translation initiation 82.0 0.36 1.2E-05 39.5 0.7 20 91-110 11-30 (178)
410 3con_A GTPase NRAS; structural 81.8 0.37 1.3E-05 40.1 0.8 21 90-110 23-43 (190)
411 3ice_A Transcription terminati 81.8 0.59 2E-05 44.4 2.2 36 89-124 175-215 (422)
412 2fwr_A DNA repair protein RAD2 81.7 0.71 2.4E-05 44.7 2.9 50 68-121 92-141 (472)
413 2hxs_A RAB-26, RAS-related pro 81.7 0.36 1.2E-05 39.5 0.6 20 91-110 9-28 (178)
414 2oil_A CATX-8, RAS-related pro 81.7 0.38 1.3E-05 40.2 0.8 21 90-110 27-47 (193)
415 2gj8_A MNME, tRNA modification 81.7 0.31 1.1E-05 40.2 0.2 21 90-110 6-26 (172)
416 1z0f_A RAB14, member RAS oncog 81.7 0.38 1.3E-05 39.3 0.8 21 90-110 17-37 (179)
417 2fn4_A P23, RAS-related protei 81.6 0.34 1.2E-05 39.7 0.4 22 90-111 11-32 (181)
418 2y8e_A RAB-protein 6, GH09086P 81.6 0.33 1.1E-05 39.6 0.4 21 90-110 16-36 (179)
419 1upt_A ARL1, ADP-ribosylation 81.6 0.38 1.3E-05 39.0 0.8 21 90-110 9-29 (171)
420 2dhr_A FTSH; AAA+ protein, hex 81.6 1 3.6E-05 44.2 4.0 15 369-383 63-77 (499)
421 2hf9_A Probable hydrogenase ni 81.6 0.36 1.2E-05 41.6 0.6 34 91-124 41-76 (226)
422 4dsu_A GTPase KRAS, isoform 2B 81.5 0.39 1.3E-05 39.6 0.8 20 91-110 7-26 (189)
423 3clv_A RAB5 protein, putative; 81.5 0.39 1.3E-05 40.1 0.8 21 91-111 10-30 (208)
424 2efe_B Small GTP-binding prote 81.5 0.4 1.4E-05 39.3 0.9 21 90-110 14-34 (181)
425 3pxg_A Negative regulator of g 81.4 1 3.5E-05 43.9 3.9 30 353-383 185-214 (468)
426 1lkx_A Myosin IE heavy chain; 81.3 0.56 1.9E-05 48.1 2.0 40 72-112 79-118 (697)
427 3b9p_A CG5977-PA, isoform A; A 81.3 0.44 1.5E-05 43.0 1.2 15 369-383 53-67 (297)
428 3h4m_A Proteasome-activating n 81.3 0.39 1.3E-05 43.1 0.7 22 362-383 41-64 (285)
429 3eie_A Vacuolar protein sortin 81.2 0.44 1.5E-05 43.9 1.1 15 369-383 50-64 (322)
430 3uk6_A RUVB-like 2; hexameric 81.2 0.88 3E-05 42.4 3.2 13 371-383 71-83 (368)
431 2yv5_A YJEQ protein; hydrolase 81.2 0.47 1.6E-05 43.4 1.3 19 91-109 168-186 (302)
432 3q72_A GTP-binding protein RAD 81.1 0.31 1.1E-05 39.4 0.0 19 91-109 5-23 (166)
433 1m7b_A RND3/RHOE small GTP-bin 81.0 0.36 1.2E-05 40.1 0.4 21 90-110 9-29 (184)
434 3kjh_A CO dehydrogenase/acetyl 81.0 0.89 3E-05 39.5 3.0 34 94-127 6-42 (254)
435 2c9o_A RUVB-like 1; hexameric 81.0 4.3 0.00015 39.2 8.2 71 142-234 297-376 (456)
436 2v26_A Myosin VI; calmodulin-b 81.0 0.62 2.1E-05 48.4 2.2 40 72-112 125-164 (784)
437 3h1t_A Type I site-specific re 80.9 1 3.4E-05 45.1 3.7 46 67-112 176-222 (590)
438 1z6t_A APAF-1, apoptotic prote 80.9 1.5 5.2E-05 43.7 5.1 33 78-110 133-169 (591)
439 2a9k_A RAS-related protein RAL 80.8 0.42 1.4E-05 39.3 0.8 22 89-110 19-40 (187)
440 4a1f_A DNAB helicase, replicat 80.8 0.47 1.6E-05 44.2 1.1 42 91-134 49-94 (338)
441 2g6b_A RAS-related protein RAB 80.7 0.43 1.5E-05 39.1 0.8 21 90-110 12-32 (180)
442 2bme_A RAB4A, RAS-related prot 80.6 0.38 1.3E-05 39.8 0.4 21 90-110 12-32 (186)
443 3bgw_A DNAB-like replicative h 80.6 0.44 1.5E-05 46.2 0.9 32 91-122 200-234 (444)
444 4dzz_A Plasmid partitioning pr 80.6 1.5 5E-05 36.9 4.2 34 95-128 9-45 (206)
445 1m2o_B GTP-binding protein SAR 80.6 0.38 1.3E-05 40.3 0.4 21 90-110 25-45 (190)
446 3lfu_A DNA helicase II; SF1 he 80.5 0.6 2.1E-05 47.3 1.9 35 89-123 23-64 (647)
447 3nh6_A ATP-binding cassette SU 80.5 0.28 9.5E-06 45.1 -0.5 27 86-112 78-104 (306)
448 4ag6_A VIRB4 ATPase, type IV s 80.5 1 3.6E-05 42.5 3.5 47 88-136 35-84 (392)
449 2gf9_A RAS-related protein RAB 80.4 0.44 1.5E-05 39.6 0.8 21 90-110 24-44 (189)
450 3kkq_A RAS-related protein M-R 80.3 0.45 1.5E-05 39.2 0.8 20 91-110 21-40 (183)
451 3c5c_A RAS-like protein 12; GD 80.2 0.46 1.6E-05 39.6 0.8 21 90-110 23-43 (187)
452 3ihw_A Centg3; RAS, centaurin, 80.2 0.47 1.6E-05 39.5 0.9 21 90-110 22-42 (184)
453 3tw8_B RAS-related protein RAB 80.2 0.42 1.4E-05 39.1 0.5 19 91-109 12-30 (181)
454 4db1_A Myosin-7; S1DC, cardiac 80.1 0.69 2.4E-05 47.9 2.2 40 72-112 156-195 (783)
455 1mh1_A RAC1; GTP-binding, GTPa 80.0 0.46 1.6E-05 39.1 0.8 21 90-110 7-27 (186)
456 3bwd_D RAC-like GTP-binding pr 80.0 0.47 1.6E-05 38.9 0.8 22 89-110 9-30 (182)
457 3euj_A Chromosome partition pr 79.9 0.63 2.1E-05 45.5 1.8 24 90-113 31-54 (483)
458 1pui_A ENGB, probable GTP-bind 79.9 0.17 5.9E-06 43.0 -2.1 21 89-109 27-47 (210)
459 2cxx_A Probable GTP-binding pr 79.9 0.36 1.2E-05 40.0 0.0 20 91-110 4-23 (190)
460 2bov_A RAla, RAS-related prote 79.8 0.47 1.6E-05 39.9 0.8 20 91-110 17-36 (206)
461 1svi_A GTP-binding protein YSX 79.8 0.36 1.2E-05 40.3 0.0 20 91-110 26-45 (195)
462 3d8b_A Fidgetin-like protein 1 79.7 0.85 2.9E-05 42.6 2.6 15 369-383 116-130 (357)
463 1u0l_A Probable GTPase ENGC; p 79.6 0.45 1.6E-05 43.5 0.6 23 90-112 171-193 (301)
464 2atv_A RERG, RAS-like estrogen 79.6 0.49 1.7E-05 39.6 0.8 22 89-110 29-50 (196)
465 1z06_A RAS-related protein RAB 79.5 0.5 1.7E-05 39.3 0.8 22 89-110 21-42 (189)
466 1vg8_A RAS-related protein RAB 79.5 0.5 1.7E-05 39.8 0.8 22 90-111 10-31 (207)
467 1kk8_A Myosin heavy chain, str 79.5 0.71 2.4E-05 48.3 2.1 40 72-112 154-193 (837)
468 1zd9_A ADP-ribosylation factor 79.4 0.5 1.7E-05 39.4 0.8 22 89-110 23-44 (188)
469 1w7j_A Myosin VA; motor protei 79.4 0.75 2.6E-05 47.8 2.2 40 72-112 141-180 (795)
470 2iwr_A Centaurin gamma 1; ANK 79.4 0.37 1.3E-05 39.5 -0.0 21 90-110 9-29 (178)
471 3hu3_A Transitional endoplasmi 79.3 1 3.5E-05 44.2 3.1 16 368-383 236-251 (489)
472 1w9i_A Myosin II heavy chain; 79.2 0.72 2.4E-05 47.7 2.0 39 73-112 158-196 (770)
473 2a5j_A RAS-related protein RAB 79.1 0.52 1.8E-05 39.3 0.8 21 90-110 23-43 (191)
474 2fg5_A RAB-22B, RAS-related pr 79.1 0.46 1.6E-05 39.7 0.4 22 89-110 24-45 (192)
475 2qp9_X Vacuolar protein sortin 79.1 0.59 2E-05 43.8 1.2 15 369-383 83-97 (355)
476 2p5s_A RAS and EF-hand domain 79.0 0.52 1.8E-05 39.6 0.8 22 89-110 29-50 (199)
477 1gm5_A RECG; helicase, replica 78.9 2 7E-05 44.6 5.3 38 69-106 368-407 (780)
478 1x3s_A RAS-related protein RAB 78.9 0.53 1.8E-05 39.1 0.8 22 90-111 17-38 (195)
479 3k53_A Ferrous iron transport 78.9 0.43 1.5E-05 42.7 0.2 20 91-110 6-25 (271)
480 3qkt_A DNA double-strand break 78.8 0.64 2.2E-05 43.2 1.4 23 92-114 27-49 (339)
481 4anj_A Unconventional myosin-V 78.8 0.79 2.7E-05 49.1 2.2 40 72-112 129-168 (1052)
482 3lxx_A GTPase IMAP family memb 78.7 0.51 1.7E-05 41.2 0.6 21 90-110 31-51 (239)
483 3tkl_A RAS-related protein RAB 78.7 0.54 1.8E-05 39.2 0.8 21 90-110 18-38 (196)
484 1knx_A Probable HPR(Ser) kinas 78.6 0.47 1.6E-05 43.6 0.4 28 88-116 147-174 (312)
485 3reg_A RHO-like small GTPase; 78.5 0.55 1.9E-05 39.2 0.8 23 89-111 24-46 (194)
486 3dz8_A RAS-related protein RAB 78.4 0.49 1.7E-05 39.5 0.4 23 90-112 25-47 (191)
487 1zbd_A Rabphilin-3A; G protein 78.2 0.53 1.8E-05 39.6 0.6 21 90-110 10-30 (203)
488 2fh5_B SR-beta, signal recogni 78.2 0.57 1.9E-05 39.8 0.8 22 90-111 9-30 (214)
489 2fu5_C RAS-related protein RAB 78.1 0.4 1.4E-05 39.6 -0.3 21 90-110 10-30 (183)
490 2bcg_Y Protein YP2, GTP-bindin 78.1 0.5 1.7E-05 39.9 0.4 21 90-110 10-30 (206)
491 2gxq_A Heat resistant RNA depe 78.1 0.72 2.5E-05 38.9 1.4 38 71-112 25-63 (207)
492 3pqc_A Probable GTP-binding pr 78.0 0.44 1.5E-05 39.6 0.0 20 91-110 26-45 (195)
493 1fzq_A ADP-ribosylation factor 78.0 0.45 1.5E-05 39.5 0.0 20 91-110 19-38 (181)
494 1w1w_A Structural maintenance 78.0 0.71 2.4E-05 44.4 1.5 24 91-114 29-52 (430)
495 1cp2_A CP2, nitrogenase iron p 78.0 1.5 5E-05 38.9 3.5 33 94-126 7-42 (269)
496 1gwn_A RHO-related GTP-binding 78.0 0.51 1.7E-05 40.2 0.4 23 89-111 29-51 (205)
497 3t1o_A Gliding protein MGLA; G 77.9 0.59 2E-05 38.8 0.8 23 90-112 16-38 (198)
498 3b5x_A Lipid A export ATP-bind 77.9 0.4 1.4E-05 48.2 -0.4 27 86-112 367-393 (582)
499 2gf0_A GTP-binding protein DI- 77.8 0.53 1.8E-05 39.3 0.4 21 90-110 10-30 (199)
500 2ew1_A RAS-related protein RAB 77.8 0.52 1.8E-05 40.0 0.4 21 90-110 28-48 (201)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=5.5e-91 Score=791.75 Aligned_cols=378 Identities=44% Similarity=0.767 Sum_probs=364.3
Q ss_pred eeeeeehHHHHHHHH-ccCCCCcchhhhhcceEEEecCC----CcEEEEEccceeeccccccCCccceeechhhHHHHHH
Q psy6129 6 EVQWLTRWFLDLECR-MNIKSVNDFEWLKQCRFYFKDDL----DKTWINITDVTFTYQNEYLGCTERLVITPLTDRCYIT 80 (383)
Q Consensus 6 ~~~~~~rd~~~~l~~-~~~~~~~~f~W~~~lr~~~~~~~----~~~~v~~~~~~~~YgyEy~g~~~~lv~Tp~t~r~~~~ 80 (383)
++.|++|||+++|++ .+|.+.++|+|++||||||+++. ++|.|++++++|+|||||+|+++|+|+||+|+|||.+
T Consensus 517 t~~VH~RDvv~~L~~~~~v~~~~dF~W~~qlRyy~~~~~~~~~~~~~v~~~~~~f~YgyEYlG~~~rLViTPLTdrcy~t 596 (3245)
T 3vkg_A 517 TELVHQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTPLTDRCYLT 596 (3245)
T ss_dssp HHHHHHHHHHHHHHTCCSCCSTTCHHHHTSEEEEECSSSSSSGGGEEEEETTEEEECCCCCCCSCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchhHHHhhhheeeccccCCcCceEEEEEcCceecCccccCCCCCCCcCChHHHHHHHH
Confidence 568999999999999 99999999999999999998764 3599999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHH
Q psy6129 81 LAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVA 160 (383)
Q Consensus 81 l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l 160 (383)
+++|++.+.|+++.||+|||||+++++||+++|+++++|||++++++..++|+++|++++|+|+|||||||+++++||++
T Consensus 597 l~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv 676 (3245)
T 3vkg_A 597 LTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAV 676 (3245)
T ss_dssp HHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCC
Q psy6129 161 AQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFL 240 (383)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~ 240 (383)
++++..|+.++.++...+.+.+|+.|+++|++++|+||||||+||.+||++|+++||+|+|..||.+.|+||+|++.||.
T Consensus 677 ~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~s~Gf~ 756 (3245)
T 3vkg_A 677 SQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFK 756 (3245)
T ss_dssp HHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHHHcccc
Confidence 99999999999998888777448999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhcchhhccC--------CC------------ChHHHHHHHHH
Q psy6129 241 ENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLGAAKRVN--------SR------------DTESTIVMRVL 300 (383)
Q Consensus 241 ~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~~~~~~~~--------~~------------~~e~~~~~~a~ 300 (383)
+++.||+|++.+|++|+++||+|.|||||||++|+|+..||++||.. ++ .+|+.+++||+
T Consensus 757 ~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~illral 836 (3245)
T 3vkg_A 757 TAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSI 836 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHHSCCCC------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 44 57899999999
Q ss_pred HHhhcCCCCCCChHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHhccccEEEECCCC
Q psy6129 301 RDMNLSKLIDEDEPLFISLVADLFPNQALEKTAYPALEGAIQEQCEAAGLIFHPPWVLKLIQLYETQRVRHGIMTLGPTG 380 (383)
Q Consensus 301 ~~~~~~~l~~~d~~~f~~li~~~Fp~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~i~kv~~l~~~l~~~~gviLvG~~G 380 (383)
+++++|||+.+|.++|.+++.|+||+++.+..++.++.++|.+.|++++|++++.|+.|++|||++++++||||||||||
T Consensus 837 rd~nlpKl~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~g 916 (3245)
T 3vkg_A 837 NDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSG 916 (3245)
T ss_dssp HHTTTTTSCGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred HHhccCCCchhhHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy6129 381 AVT 383 (383)
Q Consensus 381 sGK 383 (383)
|||
T Consensus 917 sGK 919 (3245)
T 3vkg_A 917 GGK 919 (3245)
T ss_dssp SSH
T ss_pred CCH
Confidence 998
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=5e-81 Score=709.00 Aligned_cols=374 Identities=32% Similarity=0.534 Sum_probs=361.6
Q ss_pred eeeeeehHHHHHHHHccCCCCcchhhhhcceEEEecCCC----cEEEEEccceeeccccccCCccceeechhhHHHHHHH
Q psy6129 6 EVQWLTRWFLDLECRMNIKSVNDFEWLKQCRFYFKDDLD----KTWINITDVTFTYQNEYLGCTERLVITPLTDRCYITL 81 (383)
Q Consensus 6 ~~~~~~rd~~~~l~~~~~~~~~~f~W~~~lr~~~~~~~~----~~~v~~~~~~~~YgyEy~g~~~~lv~Tp~t~r~~~~l 81 (383)
++.+++|||+++|++.++.+.++|+|++||||||+++++ .|.|++++++++|||||+|+++|+|+||+|+|||.++
T Consensus 559 ~~~vh~rDvv~~l~~~~v~~~~~f~W~~qlR~y~~~~~~~~~~~~~v~~~~~~~~YgyEYlG~~~rlViTPltdr~~~tl 638 (2695)
T 4akg_A 559 VEYLHFNNVIGQLKNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATL 638 (2695)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHSCEEEECSSCSCGGGTEEEEETTEEEECCCCCCCSCCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcchHhHHhcceEEEcCccccccceeEEEEcCeEeeccccccCCCCcceecHHHHHHHHHH
Confidence 467899999999999999999999999999999997753 5899999999999999999999999999999999999
Q ss_pred HHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHH
Q psy6129 82 AQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAA 161 (383)
Q Consensus 82 ~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~ 161 (383)
++|++.+.|+++.||+|||||++++++|+.+|++++++||++++++.++++++.|++++|+|+||||||+++++++|+++
T Consensus 639 ~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~ 718 (2695)
T 4akg_A 639 TDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVS 718 (2695)
T ss_dssp HHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHH
T ss_pred HHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCCCc
Q psy6129 162 QQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLE 241 (383)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf~~ 241 (383)
+++..+++++.++...+.+ .|+.|+++|++++|+||||||+|+.+||++|+++||+|+|..||.+.|+++++++.||.+
T Consensus 719 ~~l~~i~~al~~~~~~i~~-~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s~Gf~~ 797 (2695)
T 4akg_A 719 ANIQQIQNGLQVGKSHITL-LEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFED 797 (2695)
T ss_dssp HHHHHHHHHHHHTCSEEEC-SSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHcCCcEEee-CCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHHhcCCCc
Confidence 9999999999998877766 799999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhcchhhccCCCChHHHHHHHHHHHhhcCCCCCCChHHHHHHHH
Q psy6129 242 NITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLGAAKRVNSRDTESTIVMRVLRDMNLSKLIDEDEPLFISLVA 321 (383)
Q Consensus 242 ~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~~~~~~~~~~~~e~~~~~~a~~~~~~~~l~~~d~~~f~~li~ 321 (383)
++.+|+|++.+|++|++++++|.|||||||++++|++.|+.++|..+ .|+.++++|++++++|++..+|.++|.+++.
T Consensus 798 a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~~--~e~~~l~~al~~~~lpk~~~~D~~lf~~li~ 875 (2695)
T 4akg_A 798 SKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFG--EGEKTVVESLKRVILPSLGDTDELVFKDELS 875 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHSC--SSHHHHHHHHHHHTGGGCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccCC--cHHHHHHHHHHHhccccCchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998874 5677999999999999999999999999999
Q ss_pred hhCCCCCCCCCChhHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHhccccEEEECCCCCCC
Q psy6129 322 DLFPNQALEKTAYPALEGAIQEQCEAAGLIFHPPWVLKLIQLYETQRVRHGIMTLGPTGAVT 383 (383)
Q Consensus 322 ~~Fp~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~i~kv~~l~~~l~~~~gviLvG~~GsGK 383 (383)
|+||++..+ .++.++.+++.+.|+++++++++.|+.|++|||+++++++||||||||||||
T Consensus 876 dlFp~~~~~-~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGK 936 (2695)
T 4akg_A 876 KIFDSAGTP-LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGK 936 (2695)
T ss_dssp HHCCCCSCC-SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSH
T ss_pred HhCCCCCCC-CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCH
Confidence 999999877 7888999999999999999999999999999999999999999999999998
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=3.2e-33 Score=319.40 Aligned_cols=315 Identities=18% Similarity=0.198 Sum_probs=240.6
Q ss_pred ccceeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHH-HHHHhCCcEEEEeCCCCCCHHHHHHHHh--------
Q psy6129 65 TERLVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKD-MGKTLAKYVVVFNCSDQMDYRGLGRIYK-------- 135 (383)
Q Consensus 65 ~~~lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~-la~~lg~~~~~~~c~~~~~~~~l~~~l~-------- 135 (383)
..-+|+|++|.|....+..++..+++++|+||+|||||.+++. +++..+.+++.+|||++|+++.+.+.+.
T Consensus 1281 ~~ilVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~ 1360 (3245)
T 3vkg_A 1281 PDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRT 1360 (3245)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEEC
T ss_pred ccceecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEec
Confidence 3459999999999999999999999999999999999998865 5555577789999999999999877764
Q ss_pred ---hh----hhcCceEEe--cccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC-CCC
Q psy6129 136 ---GL----AQSGSWGCF--DEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY-AGR 205 (383)
Q Consensus 136 ---g~----~~~g~w~~~--dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~-~g~ 205 (383)
|. ...|.|+++ ||+|++..+. +.+|.+.++++++.+.++.+...+++++.+ +++++++||||++ +||
T Consensus 1361 ~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~--yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gGr 1437 (3245)
T 3vkg_A 1361 PSGETVLRPTQLGKWLVVFCDEINLPSTDK--YGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAGR 1437 (3245)
T ss_dssp TTSCEEEEESSTTCEEEEEETTTTCCCCCT--TSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTTC
T ss_pred cCCCcccCCCcCCceEEEEecccCCCCccc--cccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCCC
Confidence 32 124777665 9999999886 677777788888888877766544556655 9999999999976 899
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHH---h-hcCC-C----chHHHHHHHHHHHHHHHHhcc--CCCCCccChhhhH
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKL---A-SCGF-L----ENITLARKFYTLYKLCEEQLT--KQVHYDFGLRNIL 274 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l---~-~~gf-~----~~~~la~ki~~~~~~~~~~ls--~~~hy~f~lR~l~ 274 (383)
+++|++|.++|..+++..|+.+.+..|+- . ...| . -+..++..++.+|..+++.+. .+.||.|+||++.
T Consensus 1438 ~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLs 1517 (3245)
T 3vkg_A 1438 VQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELS 1517 (3245)
T ss_dssp CCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHH
T ss_pred ccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHH
Confidence 99999999999999999999988887741 1 0112 1 135788889999998888775 4789999999999
Q ss_pred HHHHhcchhhccCCCChHHHHHHHHH----HHhhcCCCCCC-ChHHHHHHHH----hhCCCCC-----------------
Q psy6129 275 SVLRSLGAAKRVNSRDTESTIVMRVL----RDMNLSKLIDE-DEPLFISLVA----DLFPNQA----------------- 328 (383)
Q Consensus 275 ~vi~~~~~~~~~~~~~~e~~~~~~a~----~~~~~~~l~~~-d~~~f~~li~----~~Fp~~~----------------- 328 (383)
+|++..-......... ....+++.| .++|.+||+.+ |..+|.+++. +.||+..
T Consensus 1518 rv~qGll~~~~~~~~~-~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~~~~ 1596 (3245)
T 3vkg_A 1518 RWDRALLEAIQTMDGC-TLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLTKD 1596 (3245)
T ss_dssp HHHHHHHHHHHTSSCC-CTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSCC--
T ss_pred HHHHHHHHhcCccccC-CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhcccc
Confidence 9998643321111100 112244444 35889999865 7888777665 5677532
Q ss_pred CCCCChhHHHHHHHHHHH-------HcCCccCHHHHHHHHHHHHHHhcccc-EEEECCCCCCC
Q psy6129 329 LEKTAYPALEGAIQEQCE-------AAGLIFHPPWVLKLIQLYETQRVRHG-IMTLGPTGAVT 383 (383)
Q Consensus 329 ~~~~~~~~~~~~i~~~~~-------~~~l~~~~~~i~kv~~l~~~l~~~~g-viLvG~~GsGK 383 (383)
+.+.+++++.+.+.+.++ .|+|+++++.++|+++|.|++++++| ++|||.+||||
T Consensus 1597 Y~~v~~~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGk 1659 (3245)
T 3vkg_A 1597 YQPVNRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGK 1659 (3245)
T ss_dssp --CCCHHHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSH
T ss_pred CccCCHHHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcH
Confidence 223345556655555443 38899999999999999999999988 99999999998
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.98 E-value=3.1e-31 Score=302.34 Aligned_cols=314 Identities=19% Similarity=0.254 Sum_probs=235.4
Q ss_pred cceeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHH-HHHHhCCcEEEEeCCCCCCHHHHHHHHhhhh------
Q psy6129 66 ERLVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKD-MGKTLAKYVVVFNCSDQMDYRGLGRIYKGLA------ 138 (383)
Q Consensus 66 ~~lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~-la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~------ 138 (383)
.-+|+|+.|.|....+..++..+++.+++||||||||.+++. +++..+.++..+||+..+++..+.+.+.+.+
T Consensus 1245 ~iiVpT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~ 1324 (2695)
T 4akg_A 1245 DIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTS 1324 (2695)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEET
T ss_pred ceeEeccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhcccc
Confidence 459999999999999999999999999999999999999955 5555577889999999999998888775431
Q ss_pred --------hcCc--eEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC-CCCCc
Q psy6129 139 --------QSGS--WGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY-AGRKE 207 (383)
Q Consensus 139 --------~~g~--w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~-~g~~~ 207 (383)
..|. .+++||+|++..+. +.+|.+.++++++.+.++.+...++.++.+ .++++++||||.. +||+.
T Consensus 1325 ~g~~~~P~~~gk~~VlFiDEinmp~~d~--yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~~ 1401 (2695)
T 4akg_A 1325 KGLTLLPKSDIKNLVLFCDEINLPKLDK--YGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRIP 1401 (2695)
T ss_dssp TTEEEEEBSSSSCEEEEEETTTCSCCCS--SSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCCC
T ss_pred CCccccCCCCCceEEEEecccccccccc--cCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCcc
Confidence 1233 45679999987775 455666667777777766655444566666 7899999999964 89999
Q ss_pred chHHHHHhccccccCCCCHHHHHHHH---Hhh-cCCC-----chHHHHHHHHHHHHHHHHhcc--CCCCCccChhhhHHH
Q psy6129 208 LPENLKIQFRTVAMMVPDRQIIIRVK---LAS-CGFL-----ENITLARKFYTLYKLCEEQLT--KQVHYDFGLRNILSV 276 (383)
Q Consensus 208 lp~~l~~~fr~v~~~~Pd~~~i~ei~---l~~-~gf~-----~~~~la~ki~~~~~~~~~~ls--~~~hy~f~lR~l~~v 276 (383)
|+++|.++|+.+++..|+.+.+.+|+ +.. ..|. -+..++...+.+|+.+++.+. .+.||.|+||++.+|
T Consensus 1402 l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv 1481 (2695)
T 4akg_A 1402 MSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRL 1481 (2695)
T ss_dssp CCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHH
T ss_pred CChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHH
Confidence 99999999999999999977666554 221 1221 235678888899999888875 478999999999999
Q ss_pred HHhcchhhccCCCChHHHHHHHHHH----HhhcCCCCCC-ChHHHHHHHH----hhCCCCCC------------------
Q psy6129 277 LRSLGAAKRVNSRDTESTIVMRVLR----DMNLSKLIDE-DEPLFISLVA----DLFPNQAL------------------ 329 (383)
Q Consensus 277 i~~~~~~~~~~~~~~e~~~~~~a~~----~~~~~~l~~~-d~~~f~~li~----~~Fp~~~~------------------ 329 (383)
++..-........ .....+++.|. ++|.+||+.+ |..+|.+++. +.|+....
T Consensus 1482 ~qGll~~~~~~~~-~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y 1560 (2695)
T 4akg_A 1482 VRGVYTAINTGPR-QTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDF 1560 (2695)
T ss_dssp HHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSC
T ss_pred HHHHHhcCchhhh-ccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcc
Confidence 9965332111111 12234555553 5789999765 7877777655 56765321
Q ss_pred CCCChhHHHHHHHHHHHH-------cCCccCHHHHHHHHHHHHHHhcccc-EEEECCCCCCC
Q psy6129 330 EKTAYPALEGAIQEQCEA-------AGLIFHPPWVLKLIQLYETQRVRHG-IMTLGPTGAVT 383 (383)
Q Consensus 330 ~~~~~~~~~~~i~~~~~~-------~~l~~~~~~i~kv~~l~~~l~~~~g-viLvG~~GsGK 383 (383)
.+.+.+++.+.+.+.+++ |+|+++++.++|+++|.|++++++| ++|||++||||
T Consensus 1561 ~~v~~~~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGk 1622 (2695)
T 4akg_A 1561 KEVNKTDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGK 1622 (2695)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCH
T ss_pred eecCHHHHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcH
Confidence 112334455555444433 8899999999999999999999888 99999999998
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.66 E-value=1.4e-15 Score=144.08 Aligned_cols=196 Identities=18% Similarity=0.145 Sum_probs=136.9
Q ss_pred HHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHH-HH----hhh--hhc----CceEE
Q psy6129 77 CYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGR-IY----KGL--AQS----GSWGC 145 (383)
Q Consensus 77 ~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~-~l----~g~--~~~----g~w~~ 145 (383)
....+..++..+.+.+++||||||||++++.+|+.++.+++.++|+..++..++.. .. .|. ... +.+++
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~ 114 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFIL 114 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEE
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcccccEEE
Confidence 33455556666778889999999999999999999999999999998888776432 11 111 112 36999
Q ss_pred ecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHHhcc-ccccCC
Q psy6129 146 FDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKIQFR-TVAMMV 223 (383)
Q Consensus 146 ~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~~fr-~v~~~~ 223 (383)
+||+|+++.++.+.+.+ .+.++ .+.. .|..+..++.+.+++|+|| ++.|+..+++.++++|. .+.+..
T Consensus 115 iDEi~~~~~~~~~~Ll~-------~l~~~--~~~~-~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~ 184 (331)
T 2r44_A 115 ADEVNRSPAKVQSALLE-------CMQEK--QVTI-GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTY 184 (331)
T ss_dssp EETGGGSCHHHHHHHHH-------HHHHS--EEEE-TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCC
T ss_pred EEccccCCHHHHHHHHH-------HHhcC--ceee-CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCC
Confidence 99999999988766533 33333 3333 6778888889999999998 56677789999999997 489999
Q ss_pred CCHHHHHHHHHhhcCC-------------------------CchHHHHHHHHHHHHHHHHhcc-------CCCCCccChh
Q psy6129 224 PDRQIIIRVKLASCGF-------------------------LENITLARKFYTLYKLCEEQLT-------KQVHYDFGLR 271 (383)
Q Consensus 224 Pd~~~i~ei~l~~~gf-------------------------~~~~~la~ki~~~~~~~~~~ls-------~~~hy~f~lR 271 (383)
|+.+...+++....+. .-+..+.+.+..+....+.... ....+..+.|
T Consensus 185 p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R 264 (331)
T 2r44_A 185 LDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTR 264 (331)
T ss_dssp CCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHH
T ss_pred CCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChh
Confidence 9999888876543322 1223444455555544433210 0123455788
Q ss_pred hhHHHHHhcch
Q psy6129 272 NILSVLRSLGA 282 (383)
Q Consensus 272 ~l~~vi~~~~~ 282 (383)
...++++.+..
T Consensus 265 ~~~~ll~~a~a 275 (331)
T 2r44_A 265 AAINLNRVAKA 275 (331)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888776543
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.33 E-value=9.8e-13 Score=136.79 Aligned_cols=125 Identities=20% Similarity=0.280 Sum_probs=84.1
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChh------
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELP------ 155 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~------ 155 (383)
.|++|+||||||||++++++|+.+|.+++.++|++-.+ ...+..++.-+. ...+.++|||++.+-+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~ 318 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG 318 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC
Confidence 45678999999999999999999999999999876332 233556665553 45789999999977431
Q ss_pred -hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHH
Q psy6129 156 -VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIR 231 (383)
Q Consensus 156 -~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~e 231 (383)
.-..+..++ +..+..-. . +.++.+++|+|.. ..|+++|++ +| +.|.+..||.+.=.+
T Consensus 319 ~~~~riv~~L---L~~mdg~~------~------~~~V~VIaaTN~~----d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~ 379 (806)
T 3cf2_A 319 EVERRIVSQL---LTLMDGLK------Q------RAHVIVMAATNRP----NSIDPALRRFGRFDREVDIGIPDATGRLE 379 (806)
T ss_dssp TTHHHHHHHH---HTHHHHCC------G------GGCEEEEEECSST----TTSCTTTTSTTSSCEEEECCCCCHHHHHH
T ss_pred hHHHHHHHHH---HHHHhccc------c------cCCEEEEEecCCh----hhcCHHHhCCcccceEEecCCCCHHHHHH
Confidence 222222222 22221110 0 1345677888843 578999988 67 689999999765444
Q ss_pred H
Q psy6129 232 V 232 (383)
Q Consensus 232 i 232 (383)
|
T Consensus 380 I 380 (806)
T 3cf2_A 380 I 380 (806)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.19 E-value=8.1e-10 Score=104.82 Aligned_cols=129 Identities=22% Similarity=0.288 Sum_probs=84.5
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEE----EEeCCCC---------------------------CCHHHH-H----
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVV----VFNCSDQ---------------------------MDYRGL-G---- 131 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~----~~~c~~~---------------------------~~~~~l-~---- 131 (383)
..+.+++||+|||||++++.+++.+++... .++|... .+...+ +
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 124 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDI 124 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECH
T ss_pred CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechh
Confidence 445778999999999999999999975210 1344321 222222 1
Q ss_pred -HHHh--------hh--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC
Q psy6129 132 -RIYK--------GL--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP 200 (383)
Q Consensus 132 -~~l~--------g~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np 200 (383)
+.+. |. ...+.++++||+++++.+.+..+. ..+.++...+. ..|.......++.+++|+||
T Consensus 125 ~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll-------~~le~~~~~~~-~~g~~~~~~~~~~li~~~n~ 196 (350)
T 1g8p_A 125 ERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLL-------DVAQSGENVVE-RDGLSIRHPARFVLVGSGNP 196 (350)
T ss_dssp HHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHH-------HHHHHSEEEEC-CTTCCEEEECCEEEEEEECS
T ss_pred hhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHH-------HHHhcCceEEE-ecceEEeeCCceEEEEEeCC
Confidence 1111 11 123779999999999998766543 33333322222 35666777789999999998
Q ss_pred CCCCCCcchHHHHHhccc-cccCCC-CHH
Q psy6129 201 GYAGRKELPENLKIQFRT-VAMMVP-DRQ 227 (383)
Q Consensus 201 ~~~g~~~lp~~l~~~fr~-v~~~~P-d~~ 227 (383)
.. ..+++.|+++|.. +.+..| +.+
T Consensus 197 ~~---~~l~~~L~~R~~~~~~l~~~~~~~ 222 (350)
T 1g8p_A 197 EE---GDLRPQLLDRFGLSVEVLSPRDVE 222 (350)
T ss_dssp CS---CCCCHHHHTTCSEEEECCCCCSHH
T ss_pred CC---CCCCHHHHhhcceEEEcCCCCcHH
Confidence 42 4699999999975 788888 444
No 8
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.16 E-value=2.2e-10 Score=106.67 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=92.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH--------HHHHHHHhh---h---hhcCceEEecccccCC
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY--------RGLGRIYKG---L---AQSGSWGCFDEFNRIE 153 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~--------~~l~~~l~g---~---~~~g~w~~~dein~l~ 153 (383)
..+.+++||+|||||++++.+|+.++.+++.++|+...+. ..+..++.. . +..+..+++||++.+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 129 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKIC 129 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcC
Confidence 3456789999999999999999999999999999875541 113333321 1 2347899999999987
Q ss_pred hhh----HHHHHHHHH-HHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc-ccccCCCCHH
Q psy6129 154 LPV----LSVAAQQVA-VVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR-TVAMMVPDRQ 227 (383)
Q Consensus 154 ~~~----ls~l~~~~~-~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr-~v~~~~Pd~~ 227 (383)
.+. .....+.+. .++..+ +.. .+....+ . ....++.+++|.|+.......+++.|+++|. .+.+..|+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~Ll~~l-e~~-~~~~~~~-~-~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~ 205 (310)
T 1ofh_A 130 KKGEYSGADVSREGVQRDLLPLV-EGS-TVSTKHG-M-VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAA 205 (310)
T ss_dssp CCSSCCSSHHHHHHHHHHHHHHH-HCC-EEEETTE-E-EECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHH
T ss_pred ccccccccchhHHHHHHHHHHHh-cCC-eEecccc-c-ccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHH
Confidence 654 111111111 122222 322 2222122 2 2345677888877644445689999999995 6889999988
Q ss_pred HHHHHHH
Q psy6129 228 IIIRVKL 234 (383)
Q Consensus 228 ~i~ei~l 234 (383)
.+.+++-
T Consensus 206 ~~~~il~ 212 (310)
T 1ofh_A 206 DFERILT 212 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777654
No 9
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.16 E-value=3.1e-10 Score=112.71 Aligned_cols=142 Identities=12% Similarity=0.033 Sum_probs=92.6
Q ss_pred HHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC--CcEEEEeCCCCCCHHHH-HHH--------------HhhhhhcC
Q psy6129 79 ITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA--KYVVVFNCSDQMDYRGL-GRI--------------YKGLAQSG 141 (383)
Q Consensus 79 ~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg--~~~~~~~c~~~~~~~~l-~~~--------------l~g~~~~g 141 (383)
..+..++..+.+.+|+||||||||++++.+|+.++ .++...+|.-. +++++ +.. ..|....+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~-t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~ 110 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVFGPLSIQALKDEGRYERLTSGYLPEA 110 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTC-CHHHHHCCBC----------CBCCTTSGGGC
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcC-CHHHhcCcccHHHHhhchhHHhhhccCCCcc
Confidence 44556667778889999999999999999999985 46677777643 34432 211 11222245
Q ss_pred ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc-ccc
Q psy6129 142 SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR-TVA 220 (383)
Q Consensus 142 ~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr-~v~ 220 (383)
.++++||||++++++.+.+ +..+.++ .+.. .|.....+..+ +++|+||--. ...+++++.+||- .+.
T Consensus 111 ~IL~IDEI~r~~~~~q~~L-------L~~lee~--~v~i-~G~~~~~~~~~-iI~ATN~lpe-~~~~~~aLldRF~~~i~ 178 (500)
T 3nbx_X 111 EIVFLDEIWKAGPAILNTL-------LTAINER--QFRN-GAHVEKIPMRL-LVAASNELPE-ADSSLEALYDRMLIRLW 178 (500)
T ss_dssp SEEEEESGGGCCHHHHHHH-------HHHHHSS--EEEC-SSSEEECCCCE-EEEEESSCCC-TTCTTHHHHTTCCEEEE
T ss_pred eeeeHHhHhhhcHHHHHHH-------HHHHHHH--hccC-CCCcCCcchhh-hhhccccCCC-ccccHHHHHHHHHHHHH
Confidence 5799999999999987765 3344443 3343 57777766665 5667775111 1234578988883 467
Q ss_pred cCCCCH-HHHHHHH
Q psy6129 221 MMVPDR-QIIIRVK 233 (383)
Q Consensus 221 ~~~Pd~-~~i~ei~ 233 (383)
+.+|+. +...+++
T Consensus 179 v~~p~~~ee~~~IL 192 (500)
T 3nbx_X 179 LDKVQDKANFRSML 192 (500)
T ss_dssp CCSCCCHHHHHHHH
T ss_pred HHHhhhhhhHHHHH
Confidence 788886 4444444
No 10
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.15 E-value=2.4e-10 Score=108.20 Aligned_cols=133 Identities=17% Similarity=0.218 Sum_probs=95.6
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVL 168 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~ 168 (383)
.+.+++||+|||||++++.+|+.++.+++.++|........+...+... ..|..+++||++.++.+....+ +
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vl~lDEi~~l~~~~~~~L-------l 127 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNL-SEGDILFIDEIHRLSPAIEEVL-------Y 127 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTC-CTTCEEEEETGGGCCHHHHHHH-------H
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhc-cCCCEEEEechhhcCHHHHHHH-------H
Confidence 3566899999999999999999999999999998877776666666543 4678999999999997766554 3
Q ss_pred HHHHhcCceeEecCC---cEEEe-cCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHHHHHHHH
Q psy6129 169 AAKKEKKKSFVFTDG---DSIEM-CPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 169 ~~~~~~~~~~~~~~~---~~i~~-~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei~ 233 (383)
+.+.++........+ ..++. .|.+.+++++|.. ..+++.|+++| ..+.+..|+.+.+.+++
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~----~~l~~~L~~R~~~~i~l~~~~~~e~~~il 193 (338)
T 3pfi_A 128 PAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA----GMLSNPLRDRFGMQFRLEFYKDSELALIL 193 (338)
T ss_dssp HHHHTSCC---------CCCCCCCCCCCEEEEEESCG----GGSCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred HHHHhccchhhcccCccccceecCCCCeEEEEeCCCc----cccCHHHHhhcCEEeeCCCcCHHHHHHHH
Confidence 333443322111010 12222 2468899999963 35888999999 78899999988776654
No 11
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.15 E-value=9.4e-12 Score=126.68 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=87.5
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH-----HHHHh-------hh--hhcCceEEecccccCChh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL-----GRIYK-------GL--AQSGSWGCFDEFNRIELP 155 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l-----~~~l~-------g~--~~~g~w~~~dein~l~~~ 155 (383)
+.+++||||||||++++.+|+.+++..+... ...+...+ ..... |+ ...|+++++|||++++++
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~--~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~ 406 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTG--KGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE 406 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCT--TCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCC--CccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh
Confidence 5778999999999999999999998865532 11222211 11111 22 235789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCC----------cchHHHHHhc--cccccCC
Q psy6129 156 VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRK----------ELPENLKIQF--RTVAMMV 223 (383)
Q Consensus 156 ~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~----------~lp~~l~~~f--r~v~~~~ 223 (383)
..+.+ +..+.++. ......|.....+.++.+++|+||.. |+. .||+.|.+|| ..+....
T Consensus 407 ~q~~L-------l~~le~~~-i~i~~~g~~~~~~~~~~vIaatNp~~-G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~ 477 (595)
T 3f9v_A 407 DRVAI-------HEAMEQQT-VSIAKAGIVAKLNARAAVIAAGNPKF-GRYISERPVSDNINLPPTILSRFDLIFILKDQ 477 (595)
T ss_dssp HHHHH-------HHHHHSSS-EEEESSSSEEEECCCCEEEEEECCTT-CCSCTTSCSCTTTCSCSSSGGGCSCCEEECCT
T ss_pred Hhhhh-------HHHHhCCE-EEEecCCcEEEecCceEEEEEcCCcC-CccCcccCchhccCCCHHHHhhCeEEEEeCCC
Confidence 87654 33444432 22223577888889999999999953 333 8999999999 3445567
Q ss_pred CCHH
Q psy6129 224 PDRQ 227 (383)
Q Consensus 224 Pd~~ 227 (383)
||.+
T Consensus 478 ~~~e 481 (595)
T 3f9v_A 478 PGEQ 481 (595)
T ss_dssp THHH
T ss_pred CCHH
Confidence 7755
No 12
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.2e-10 Score=109.90 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=89.4
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChh----
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELP---- 155 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~---- 155 (383)
...|.+|+||||||||.+++++|..+|.+++.+++++-.+ ...+..++.-+. ...+.++|||++.+-..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~ 260 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEG 260 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCS
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCC
Confidence 3467889999999999999999999999999999987554 334666666553 45678889999976321
Q ss_pred ---hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHH
Q psy6129 156 ---VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQII 229 (383)
Q Consensus 156 ---~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i 229 (383)
.-......+..++..+..-. . ..+..+++|+|.. ..|+++|++ || +.|.+..||.+.-
T Consensus 261 ~~~~~~~~~~~l~~lL~~lDg~~------~------~~~V~vIaATNrp----d~LDpAllRpGRfD~~I~i~lPd~~~R 324 (405)
T 4b4t_J 261 SGGGDSEVQRTMLELLNQLDGFE------T------SKNIKIIMATNRL----DILDPALLRPGRIDRKIEFPPPSVAAR 324 (405)
T ss_dssp SSGGGGHHHHHHHHHHHHHHTTT------C------CCCEEEEEEESCS----SSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred CCCCcHHHHHHHHHHHHhhhccC------C------CCCeEEEeccCCh----hhCCHhHcCCCcCceEEEcCCcCHHHH
Confidence 00111222233344333211 1 2456688899853 589999997 77 7899999997654
Q ss_pred HHH
Q psy6129 230 IRV 232 (383)
Q Consensus 230 ~ei 232 (383)
.+|
T Consensus 325 ~~I 327 (405)
T 4b4t_J 325 AEI 327 (405)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 13
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.14 E-value=1.2e-09 Score=114.75 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=86.0
Q ss_pred HHHHHHHHc--cCCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCCCC--------HHHHHHHHhhhh
Q psy6129 79 ITLAQALTM--SMGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQMD--------YRGLGRIYKGLA 138 (383)
Q Consensus 79 ~~l~~al~~--~~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~~~--------~~~l~~~l~g~~ 138 (383)
..+...+.. ..+++++||+|||||++++.+|+.+ +..++.++++.... ...+..++..+.
T Consensus 196 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~ 275 (758)
T 1r6b_X 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE 275 (758)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHH
Confidence 344445543 3456789999999999999999987 66677777665432 122444554443
Q ss_pred h-cCceEEecccccCCh------hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchH
Q psy6129 139 Q-SGSWGCFDEFNRIEL------PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPE 210 (383)
Q Consensus 139 ~-~g~w~~~dein~l~~------~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~ 210 (383)
. .+.++++||++.+.. .... . .+.+.. . . + ..++.+++++|+ .|.+...+++
T Consensus 276 ~~~~~iL~IDEi~~l~~~~~~~~~~~~-----~---~~~L~~---~--l-~------~~~~~~I~at~~~~~~~~~~~d~ 335 (758)
T 1r6b_X 276 QDTNSILFIDEIHTIIGAGAASGGQVD-----A---ANLIKP---L--L-S------SGKIRVIGSTTYQEFSNIFEKDR 335 (758)
T ss_dssp SSSCEEEEETTTTTTTTSCCSSSCHHH-----H---HHHHSS---C--S-S------SCCCEEEEEECHHHHHCCCCCTT
T ss_pred hcCCeEEEEechHHHhhcCCCCcchHH-----H---HHHHHH---H--H-h------CCCeEEEEEeCchHHhhhhhcCH
Confidence 3 468899999998732 1111 1 111111 1 0 1 134667788875 4555667888
Q ss_pred HHHHhccccccCCCCHHHHHHHH
Q psy6129 211 NLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 211 ~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
+|.++|..+.+..|+.+...+++
T Consensus 336 aL~~Rf~~i~v~~p~~~e~~~il 358 (758)
T 1r6b_X 336 ALARRFQKIDITEPSIEETVQII 358 (758)
T ss_dssp SSGGGEEEEECCCCCHHHHHHHH
T ss_pred HHHhCceEEEcCCCCHHHHHHHH
Confidence 99999999999999988776665
No 14
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.13 E-value=1.4e-09 Score=102.00 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=97.7
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVL 168 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~ 168 (383)
.+.+++||+|||||++++.+++.++.+++.++|+.......+...+.+....+.++++||++.++.+....+ +
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L-------~ 111 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHL-------Y 111 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHH-------H
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHH-------H
Confidence 567789999999999999999999999999999998887777777777566788999999999997765544 2
Q ss_pred HHHHhcCceeEecCC---cEEE-ecCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHHHHHHHH
Q psy6129 169 AAKKEKKKSFVFTDG---DSIE-MCPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 169 ~~~~~~~~~~~~~~~---~~i~-~~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei~ 233 (383)
+.+.+.........+ ..++ ..+++.+++++|.. ..+++.+.++| ..+.+..|+.+.+.+++
T Consensus 112 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~----~~~~~~l~~R~~~~i~l~~~~~~e~~~~l 177 (324)
T 1hqc_A 112 PAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP----GLITAPLLSRFGIVEHLEYYTPEELAQGV 177 (324)
T ss_dssp HHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC----SSCSCSTTTTCSCEEECCCCCHHHHHHHH
T ss_pred HHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc----ccCCHHHHhcccEEEecCCCCHHHHHHHH
Confidence 333333211110000 1222 23578899999864 35667788888 57888999988776654
No 15
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.12 E-value=5e-10 Score=102.36 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHh--------------
Q psy6129 73 LTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYK-------------- 135 (383)
Q Consensus 73 ~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~-------------- 135 (383)
...+....+..+.....+.+++||+|||||++++.+++.++ .+++.++|+.... ..+...+-
T Consensus 14 ~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~g~~~~~~~g~~~~~ 92 (265)
T 2bjv_A 14 SFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRH 92 (265)
T ss_dssp HHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-HHHHHHHHCCC---------CC
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-hHHHHHhcCCcccccccccccc
Confidence 34444444555555667788999999999999999999886 5799999997643 22222211
Q ss_pred -hhh--hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC---CCCcch
Q psy6129 136 -GLA--QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA---GRKELP 209 (383)
Q Consensus 136 -g~~--~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~---g~~~lp 209 (383)
|.. ..|.++++||++.++.+....+. +.+.++ .+.. .|.......++++++|+|+... ....++
T Consensus 93 ~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll-------~~l~~~--~~~~-~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~ 162 (265)
T 2bjv_A 93 PGRFERADGGTLFLDELATAPMMVQEKLL-------RVIEYG--ELER-VGGSQPLQVNVRLVCATNADLPAMVNEGTFR 162 (265)
T ss_dssp CCHHHHTTTSEEEEESGGGSCHHHHHHHH-------HHHHHC--EECC-CCC--CEECCCEEEEEESSCHHHHHHHTSSC
T ss_pred cchhhhcCCcEEEEechHhcCHHHHHHHH-------HHHHhC--Ceec-CCCcccccCCeEEEEecCcCHHHHHHcCCcc
Confidence 111 34679999999999988765442 223332 2221 3434445577899999997421 123577
Q ss_pred HHHHHhccccccCCCCHH
Q psy6129 210 ENLKIQFRTVAMMVPDRQ 227 (383)
Q Consensus 210 ~~l~~~fr~v~~~~Pd~~ 227 (383)
+.|.++|..+.+..|+..
T Consensus 163 ~~L~~Rl~~~~i~lp~L~ 180 (265)
T 2bjv_A 163 ADLLDALAFDVVQLPPLR 180 (265)
T ss_dssp HHHHHHHCSEEEECCCGG
T ss_pred HHHHHhhcCcEEeCCChh
Confidence 889999977777777643
No 16
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.12 E-value=2.1e-09 Score=100.22 Aligned_cols=134 Identities=18% Similarity=0.268 Sum_probs=90.5
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHH---------------Hhhhh--hcCceEEeccc
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRI---------------YKGLA--QSGSWGCFDEF 149 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~---------------l~g~~--~~g~w~~~dei 149 (383)
+.+++||+|||||++++.+|+.+ +.+++.++|+...+.....++ +.++. ..|.++++||+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi 128 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAI 128 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeCh
Confidence 45789999999999999999998 566899999876654433333 22332 24679999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC------CC----------------CCc
Q psy6129 150 NRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY------AG----------------RKE 207 (383)
Q Consensus 150 n~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~------~g----------------~~~ 207 (383)
+.+++++...+.+.+ .++ .+....+..+.. .++.+++|+|++. .+ ...
T Consensus 129 ~~l~~~~~~~Ll~~l-------e~~--~~~~~~~~~~~~-~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~ 198 (311)
T 4fcw_A 129 EKAHPDVFNILLQML-------DDG--RLTDSHGRTVDF-RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQH 198 (311)
T ss_dssp GGSCHHHHHHHHHHH-------HHS--EEECTTSCEEEC-TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHH
T ss_pred hhcCHHHHHHHHHHH-------hcC--EEEcCCCCEEEC-CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHh
Confidence 999998776653333 232 222223445554 4566999999831 00 235
Q ss_pred chHHHHHhc-cccccCCCCHHHHHHHH
Q psy6129 208 LPENLKIQF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 208 lp~~l~~~f-r~v~~~~Pd~~~i~ei~ 233 (383)
+++.|.++| ..+.+..|+.+.+.++.
T Consensus 199 ~~~~l~~R~~~~~~~~p~~~~~~~~i~ 225 (311)
T 4fcw_A 199 FRPEFLNRLDEIVVFRPLTKEQIRQIV 225 (311)
T ss_dssp SCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred CCHHHHhcCCeEEEeCCCCHHHHHHHH
Confidence 677888888 56677778877766654
No 17
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1e-09 Score=106.68 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=100.8
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChh-----
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELP----- 155 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~----- 155 (383)
..|.+|+||||||||.+++++|..+|.+++.+++++..+ ...+..++.-+. ...+.+++||++.+-..
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~ 285 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ 285 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCC
Confidence 456789999999999999999999999999999988654 233566666553 45688899999843110
Q ss_pred --hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccC-CCCHHH-
Q psy6129 156 --VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMM-VPDRQI- 228 (383)
Q Consensus 156 --~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~-~Pd~~~- 228 (383)
.-......+..++..+..-. . ..+..+++|+|.. ..|+++|++ || +.|.+. .||...
T Consensus 286 ~~~~~~~~r~l~~lL~~ldg~~------~------~~~v~vI~aTN~~----~~LD~AllRpGRfd~~I~~p~lPd~~~R 349 (428)
T 4b4t_K 286 TGSDREVQRILIELLTQMDGFD------Q------STNVKVIMATNRA----DTLDPALLRPGRLDRKIEFPSLRDRRER 349 (428)
T ss_dssp SCCCCHHHHHHHHHHHHHHHSC------S------SCSEEEEEEESCS----SSCCHHHHSSSSEEEEEECCSSCCHHHH
T ss_pred CCCChHHHHHHHHHHHHhhCCC------C------CCCEEEEEecCCh----hhcChhhhcCCcceEEEEcCCCCCHHHH
Confidence 00011111222333332211 1 1346688899842 579999997 66 567884 799664
Q ss_pred --HHHHHHhhcCCCch---HHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhcc
Q psy6129 229 --IIRVKLASCGFLEN---ITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLG 281 (383)
Q Consensus 229 --i~ei~l~~~gf~~~---~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~~ 281 (383)
|.++++........ ..+|.+ ...|+-.+|..+++.|+
T Consensus 350 ~~Il~~~~~~~~l~~~~dl~~lA~~----------------t~G~sgadi~~l~~eA~ 391 (428)
T 4b4t_K 350 RLIFGTIASKMSLAPEADLDSLIIR----------------NDSLSGAVIAAIMQEAG 391 (428)
T ss_dssp HHHHHHHHHSSCBCTTCCHHHHHHH----------------TTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcccCHHHHHHH----------------CCCCCHHHHHHHHHHHH
Confidence 55555544443221 222211 12356778888877654
No 18
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.08 E-value=4.4e-10 Score=117.97 Aligned_cols=133 Identities=14% Similarity=0.243 Sum_probs=89.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHH-HHHHhhhh--hcCceEEecccccCChhhHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGL-GRIYKGLA--QSGSWGCFDEFNRIELPVLSVAAQQV 164 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l-~~~l~g~~--~~g~w~~~dein~l~~~~ls~l~~~~ 164 (383)
.+++||+|||||++++.+|+.+ +.+++.+||++.++.... +..+.++. ..+.+++|||++++++++.+.+.+.+
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~l 603 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVL 603 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHh
Confidence 5689999999999999999998 678999999986653321 22222332 35679999999999998877654333
Q ss_pred HHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCC--------CCcchHHHHHhc-cccccCCCCHHHHHHHH
Q psy6129 165 AVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAG--------RKELPENLKIQF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g--------~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei~ 233 (383)
.++ .+....|..+. ..++.+++|+|.+... ...+++.|.+|| ..+.+..|+.+.+.++.
T Consensus 604 -------e~g--~~~~~~g~~~~-~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~ 671 (758)
T 3pxi_A 604 -------EDG--RLTDSKGRTVD-FRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIV 671 (758)
T ss_dssp -------HHS--BCC-----CCB-CTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHH
T ss_pred -------ccC--eEEcCCCCEec-cCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHH
Confidence 332 22222344333 3678999999975432 123788888888 67888888887777664
No 19
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.08 E-value=6.4e-10 Score=108.13 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=88.3
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhh-hhcCceEEecccccCChh----
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGL-AQSGSWGCFDEFNRIELP---- 155 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~-~~~g~w~~~dein~l~~~---- 155 (383)
...|.+|+||||||||.+++++|..+|.+++.+++++-.+ ...+..++.-+ ....+.++|||++.+-..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~ 321 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDD 321 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSS
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCc
Confidence 4567789999999999999999999999999999987554 23355566555 345788999999966321
Q ss_pred ---hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHH
Q psy6129 156 ---VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQII 229 (383)
Q Consensus 156 ---~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i 229 (383)
.-......+..++..+.... . ..+..+++|+|.. ..|+++|++ || +.|.+..||.+.-
T Consensus 322 ~~~~~~~~~~~l~~lL~~lDg~~------~------~~~ViVIaATNrp----d~LDpALlRpGRFD~~I~i~lPd~~~R 385 (467)
T 4b4t_H 322 GAGGDNEVQRTMLELITQLDGFD------P------RGNIKVMFATNRP----NTLDPALLRPGRIDRKVEFSLPDLEGR 385 (467)
T ss_dssp SCGGGGHHHHHHHHHHHHHHSSC------C------TTTEEEEEECSCT----TSBCHHHHSTTTCCEEECCCCCCHHHH
T ss_pred CCCccHHHHHHHHHHHHHhhccC------C------CCcEEEEeCCCCc----ccCChhhhccccccEEEEeCCcCHHHH
Confidence 11111122222333332111 1 2456678888843 589999987 78 7899999997654
Q ss_pred HHH
Q psy6129 230 IRV 232 (383)
Q Consensus 230 ~ei 232 (383)
.+|
T Consensus 386 ~~I 388 (467)
T 4b4t_H 386 ANI 388 (467)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 20
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.08 E-value=6.5e-11 Score=98.28 Aligned_cols=129 Identities=10% Similarity=0.036 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEeccc
Q psy6129 73 LTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEF 149 (383)
Q Consensus 73 ~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dei 149 (383)
...+....+..+.....++++.||+|||||++++.+++.. +.+++ ++|+...+.......+. ...|..+++||+
T Consensus 9 ~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~--~a~~g~l~ldei 85 (145)
T 3n70_A 9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIA--LAQGGTLVLSHP 85 (145)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHH--HHTTSCEEEECG
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHH--HcCCcEEEEcCh
Confidence 3455555555555677788899999999999999999987 67888 99998665433323222 225678999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC---CCCcchHHHHHhccccccCCCC
Q psy6129 150 NRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA---GRKELPENLKIQFRTVAMMVPD 225 (383)
Q Consensus 150 n~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~---g~~~lp~~l~~~fr~v~~~~Pd 225 (383)
+.++.+....+.+.+ ... ..++++++|+|.... ....+.+.|..++..+.+..|.
T Consensus 86 ~~l~~~~q~~Ll~~l-------~~~--------------~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 86 EHLTREQQYHLVQLQ-------SQE--------------HRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLP 143 (145)
T ss_dssp GGSCHHHHHHHHHHH-------HSS--------------SCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCC
T ss_pred HHCCHHHHHHHHHHH-------hhc--------------CCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCC
Confidence 999998766543322 111 235678899985321 1124556666666666666664
No 21
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.07 E-value=3.3e-09 Score=99.93 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=86.8
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh-CCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChhh----
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL-AKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELPV---- 156 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l-g~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~~---- 156 (383)
.+.+|+||+|||||++++++|+.+ +.+++.++|++..+ ...+..++.-+. .....+++||++.+...-
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~ 125 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 125 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc
Confidence 456789999999999999999999 88999999987543 333555554443 345789999999873210
Q ss_pred HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHHHHHHHH
Q psy6129 157 LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 157 ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei~ 233 (383)
..........++..+..-.. -..++.+++|+|.. ..+++.++++| +.+.+..||.+...+++
T Consensus 126 ~~~~~~~~~~ll~~ld~~~~-----------~~~~v~vI~atn~~----~~ld~al~rRf~~~i~i~~P~~~~r~~il 188 (322)
T 1xwi_A 126 SEAARRIKTEFLVQMQGVGV-----------DNDGILVLGATNIP----WVLDSAIRRRFEKRIYIPLPEPHARAAMF 188 (322)
T ss_dssp TTHHHHHHHHHHHHHHCSSS-----------CCTTEEEEEEESCT----TTSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcccc-----------cCCCEEEEEecCCc----ccCCHHHHhhcCeEEEeCCcCHHHHHHHH
Confidence 00111112222333322110 02457788899864 47899999999 78899999987655554
No 22
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.06 E-value=3.4e-10 Score=118.86 Aligned_cols=133 Identities=18% Similarity=0.277 Sum_probs=94.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH---------------HHHHhhhh--hcCceEEecccccCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL---------------GRIYKGLA--QSGSWGCFDEFNRIE 153 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l---------------~~~l~g~~--~~g~w~~~dein~l~ 153 (383)
.+++||+|||||++++.+|+.+|.+++.++|++.++...+ ++.+.++. ..+++++|||+++++
T Consensus 491 ~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~ 570 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH 570 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccC
Confidence 4688999999999999999999999999999987653211 12223332 346899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC----------CCC-----------CcchHHH
Q psy6129 154 LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY----------AGR-----------KELPENL 212 (383)
Q Consensus 154 ~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~----------~g~-----------~~lp~~l 212 (383)
++++..+.+.+ .++ .+....|..+.. .++.+++|+|++. .+. ..+++.|
T Consensus 571 ~~~~~~Ll~~l-------e~~--~~~~~~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l 640 (758)
T 1r6b_X 571 PDVFNILLQVM-------DNG--TLTDNNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEF 640 (758)
T ss_dssp HHHHHHHHHHH-------HHS--EEEETTTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHH
T ss_pred HHHHHHHHHHh-------cCc--EEEcCCCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHH
Confidence 99877654333 232 333335667766 7899999999842 111 1677888
Q ss_pred HHhc-cccccCCCCHHHHHHHH
Q psy6129 213 KIQF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 213 ~~~f-r~v~~~~Pd~~~i~ei~ 233 (383)
.+|| ..|.+..|+.+.+.++.
T Consensus 641 ~~R~~~~i~~~~l~~~~~~~i~ 662 (758)
T 1r6b_X 641 RNRLDNIIWFDHLSTDVIHQVV 662 (758)
T ss_dssp HTTCSEEEECCCCCHHHHHHHH
T ss_pred HhhCCcceeeCCCCHHHHHHHH
Confidence 8898 56778888887766654
No 23
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.05 E-value=3.5e-10 Score=114.01 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=83.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHH---------------HHHHhhhhhcCceEEecccccCChh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGL---------------GRIYKGLAQSGSWGCFDEFNRIELP 155 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l---------------~~~l~g~~~~g~w~~~dein~l~~~ 155 (383)
.+++||+|||||++++.+|..++.++..++|+...+...+ .+.+.-+...+..+++||++.+..+
T Consensus 111 vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~ 190 (543)
T 3m6a_A 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSD 190 (543)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSSCC--
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhh
Confidence 4578999999999999999999999999999875543322 1122223334558899999999876
Q ss_pred hHHHHHHHHHHHHHHHHhcC-ceeEecCCcEEEec-CCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 156 VLSVAAQQVAVVLAAKKEKK-KSFVFTDGDSIEMC-PEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 156 ~ls~l~~~~~~i~~~~~~~~-~~~~~~~~~~i~~~-~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
.-...... +++.+.... ..+.. .+.....+ .++.+++|+|+. ..+|+.|++||..+.+..|+.+...++.
T Consensus 191 ~~~~~~~~---LL~~ld~~~~~~~~~-~~~~~~~~~~~v~iI~ttN~~----~~l~~aL~~R~~vi~~~~~~~~e~~~Il 262 (543)
T 3m6a_A 191 FRGDPSSA---MLEVLDPEQNSSFSD-HYIEETFDLSKVLFIATANNL----ATIPGPLRDRMEIINIAGYTEIEKLEIV 262 (543)
T ss_dssp -------C---CGGGTCTTTTTBCCC-SSSCCCCBCSSCEEEEECSST----TTSCHHHHHHEEEEECCCCCHHHHHHHH
T ss_pred hccCHHHH---HHHHHhhhhcceeec-ccCCeeecccceEEEeccCcc----ccCCHHHHhhcceeeeCCCCHHHHHHHH
Confidence 42111111 111121111 11111 11112222 578899999975 4899999999999999999988766664
No 24
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.05 E-value=6.6e-09 Score=91.21 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=93.8
Q ss_pred HHHHHHHHHHccC--CCCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHHHHHHHHhhhh-------hcCc
Q psy6129 77 CYITLAQALTMSM--GGSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRGLGRIYKGLA-------QSGS 142 (383)
Q Consensus 77 ~~~~l~~al~~~~--~~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~~l~~~l~g~~-------~~g~ 142 (383)
....+..++.... +.+++||+|||||++++.+++.+ +..++.++|+...+...+.+.+.... ..+.
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (226)
T 2chg_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFK 104 (226)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCE
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCce
Confidence 3445555565543 35678999999999999999986 35588899998888776665554432 3456
Q ss_pred eEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccC
Q psy6129 143 WGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMM 222 (383)
Q Consensus 143 w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~ 222 (383)
++++||++.+..+.+..+... +... .+++.+++|+|.. ..+++.++++|..+.+.
T Consensus 105 vliiDe~~~l~~~~~~~l~~~-------l~~~--------------~~~~~~i~~~~~~----~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 105 IIFLDEADALTADAQAALRRT-------MEMY--------------SKSCRFILSCNYV----SRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp EEEEETGGGSCHHHHHHHHHH-------HHHT--------------TTTEEEEEEESCG----GGSCHHHHTTSEEEECC
T ss_pred EEEEeChhhcCHHHHHHHHHH-------HHhc--------------CCCCeEEEEeCCh----hhcCHHHHHhCceeecC
Confidence 889999999988765543222 2121 1346678888753 46788999999999998
Q ss_pred CCCHHHHHHHH
Q psy6129 223 VPDRQIIIRVK 233 (383)
Q Consensus 223 ~Pd~~~i~ei~ 233 (383)
.|+.+.+.+++
T Consensus 160 ~~~~~~~~~~l 170 (226)
T 2chg_A 160 PVPKEAMKKRL 170 (226)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88887776654
No 25
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.04 E-value=2.4e-10 Score=111.15 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=87.9
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhh-hhcCceEEecccccCCh-----h
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGL-AQSGSWGCFDEFNRIEL-----P 155 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~-~~~g~w~~~dein~l~~-----~ 155 (383)
..|.+|+||||||||.+++++|..+|.+++.+++++-.+ ...+..++.-+ ....+.++|||++.+-. .
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~ 294 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE 294 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCC
Confidence 456789999999999999999999999999999987553 23355555544 45678899999985411 1
Q ss_pred --hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHH--
Q psy6129 156 --VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQI-- 228 (383)
Q Consensus 156 --~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~-- 228 (383)
.-......+..++..+..- .+ ..+..+++|+|.. ..|+++|++ || +.|.+..||.+.
T Consensus 295 ~~~~~~~~~~~~~lL~~ldg~-------~~-----~~~ViVIaaTNrp----~~LD~AllRpGRfD~~I~i~lPd~~~R~ 358 (434)
T 4b4t_M 295 KSGDREVQRTMLELLNQLDGF-------SS-----DDRVKVLAATNRV----DVLDPALLRSGRLDRKIEFPLPSEDSRA 358 (434)
T ss_dssp GGTTHHHHHHHHHHHHHHTTS-------CS-----SCSSEEEEECSSC----CCCCTTTCSTTSEEEEEECCCCCHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcc-------CC-----CCCEEEEEeCCCc----hhcCHhHhcCCceeEEEEeCCcCHHHHH
Confidence 0111122222333333211 11 2346788899843 578999977 77 688999999765
Q ss_pred -HHHHHHhh
Q psy6129 229 -IIRVKLAS 236 (383)
Q Consensus 229 -i~ei~l~~ 236 (383)
|.++++..
T Consensus 359 ~Il~~~~~~ 367 (434)
T 4b4t_M 359 QILQIHSRK 367 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 44444443
No 26
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.04 E-value=3.2e-10 Score=109.24 Aligned_cols=133 Identities=19% Similarity=0.179 Sum_probs=88.3
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChh-----
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELP----- 155 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~----- 155 (383)
..|.+|+||||||||.+++++|..+|.+++.+++++-.+ ...+..++.-+. ...+.++|||++.+-..
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~ 295 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN 295 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCC
Confidence 467789999999999999999999999999999987553 223555565553 45688999999966221
Q ss_pred --hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHH--
Q psy6129 156 --VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQI-- 228 (383)
Q Consensus 156 --~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~-- 228 (383)
.-......+..++..+..-. . ..+..+++|+|-. ..|+++|++ +| +.|.+..||.+.
T Consensus 296 ~~~~~~~~~~l~~LL~~lDg~~------~------~~~ViVIaATNrp----d~LDpALlRpGRfD~~I~v~lPd~~~R~ 359 (437)
T 4b4t_I 296 SGGEREIQRTMLELLNQLDGFD------D------RGDVKVIMATNKI----ETLDPALIRPGRIDRKILFENPDLSTKK 359 (437)
T ss_dssp CSSCCHHHHHHHHHHHHHHHCC------C------SSSEEEEEEESCS----TTCCTTSSCTTTEEEEECCCCCCHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhCcC------C------CCCEEEEEeCCCh----hhcCHHHhcCCceeEEEEcCCcCHHHHH
Confidence 00011112222333332211 1 2456788899853 578999987 66 678999999765
Q ss_pred -HHHHHHhh
Q psy6129 229 -IIRVKLAS 236 (383)
Q Consensus 229 -i~ei~l~~ 236 (383)
|.++++..
T Consensus 360 ~Il~~~l~~ 368 (437)
T 4b4t_I 360 KILGIHTSK 368 (437)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 44444443
No 27
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.04 E-value=5.2e-10 Score=108.89 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=87.8
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhh-hhcCceEEecccccCChh-----
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGL-AQSGSWGCFDEFNRIELP----- 155 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~-~~~g~w~~~dein~l~~~----- 155 (383)
..|.+|+||||||||.+++++|..+|.+++.+++++-++ ...+..++.-+ ....+.++|||++.+-..
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~ 294 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG 294 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCC
Confidence 467789999999999999999999999999999988664 22355555554 346788999999966321
Q ss_pred --hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHh--c-cccccCCCCHHH--
Q psy6129 156 --VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQ--F-RTVAMMVPDRQI-- 228 (383)
Q Consensus 156 --~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~--f-r~v~~~~Pd~~~-- 228 (383)
.-......+..++..+..- ++ ..+..+++|+|-. ..|+++|++. | +.|.+..||.+.
T Consensus 295 ~~~~~~~~~~l~~lL~~lDg~-------~~-----~~~vivI~ATNrp----~~LDpAllRpGRfD~~I~i~lPd~~~R~ 358 (437)
T 4b4t_L 295 TSADREIQRTLMELLTQMDGF-------DN-----LGQTKIIMATNRP----DTLDPALLRPGRLDRKVEIPLPNEAGRL 358 (437)
T ss_dssp CSSTTHHHHHHHHHHHHHHSS-------SC-----TTSSEEEEEESST----TSSCTTTTSTTSEEEEECCCCCCHHHHH
T ss_pred CCcchHHHHHHHHHHHHhhcc-------cC-----CCCeEEEEecCCc----hhhCHHHhCCCccceeeecCCcCHHHHH
Confidence 0011112222333333321 11 1345678888843 4788888765 5 678999999765
Q ss_pred -HHHHHHh
Q psy6129 229 -IIRVKLA 235 (383)
Q Consensus 229 -i~ei~l~ 235 (383)
|.++++.
T Consensus 359 ~Il~~~~~ 366 (437)
T 4b4t_L 359 EIFKIHTA 366 (437)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 4444443
No 28
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.03 E-value=1.2e-09 Score=104.25 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=84.1
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhhh-hcCceEEecccccCChhhHH---
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGLA-QSGSWGCFDEFNRIELPVLS--- 158 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls--- 158 (383)
.+.+|+||+|||||++++++|+.++.+++.++|++.. ....+..++.-+. ..+..+++||++.+...--.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~ 164 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES 164 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------C
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcc
Confidence 4567899999999999999999999999999987421 2223444444332 35678999999988643110
Q ss_pred -HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHHHHHHHH
Q psy6129 159 -VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 159 -~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei~ 233 (383)
........++..+..... ...++.+++|+|.. ..+++.++++| +.+.+..||.+...+++
T Consensus 165 ~~~~~~~~~ll~~l~~~~~-----------~~~~v~vI~atn~~----~~ld~al~rRf~~~i~i~~P~~~~r~~il 226 (355)
T 2qp9_X 165 EASRRIKTELLVQMNGVGN-----------DSQGVLVLGATNIP----WQLDSAIRRRFERRIYIPLPDLAARTTMF 226 (355)
T ss_dssp THHHHHHHHHHHHHHHCC--------------CCEEEEEEESCG----GGSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccc-----------cCCCeEEEeecCCc----ccCCHHHHcccCEEEEeCCcCHHHHHHHH
Confidence 001111122222221100 12457788899863 47899999999 77889999987655554
No 29
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.02 E-value=2.7e-10 Score=120.96 Aligned_cols=140 Identities=17% Similarity=0.168 Sum_probs=78.9
Q ss_pred HHHHHHHHHcc--CCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCCCCHH--------HHHHHHhhh
Q psy6129 78 YITLAQALTMS--MGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQMDYR--------GLGRIYKGL 137 (383)
Q Consensus 78 ~~~l~~al~~~--~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~~~~~--------~l~~~l~g~ 137 (383)
...+...+... .+++|+||+|||||++++.+|+.+ |.+++.++|+...... .+..++..+
T Consensus 179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~ 258 (854)
T 1qvr_A 179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV 258 (854)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHH
Confidence 33444455443 356789999999999999999988 8899999998764211 134444444
Q ss_pred hh--cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHH
Q psy6129 138 AQ--SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKI 214 (383)
Q Consensus 138 ~~--~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~ 214 (383)
.. .+..+++||++.+...--+..+.....++..+.++ .++.+++++|+ .|.. ..+++.|.+
T Consensus 259 ~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~---------------~~i~~I~at~~~~~~~-~~~d~aL~r 322 (854)
T 1qvr_A 259 VQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR---------------GELRLIGATTLDEYRE-IEKDPALER 322 (854)
T ss_dssp HTTCSSEEEEECCC-------------------HHHHHT---------------TCCCEEEEECHHHHHH-HTTCTTTCS
T ss_pred HhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC---------------CCeEEEEecCchHHhh-hccCHHHHh
Confidence 43 34578889999876332111111111222222222 13456777775 2322 456788999
Q ss_pred hccccccCCCCHHHHHHHH
Q psy6129 215 QFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 215 ~fr~v~~~~Pd~~~i~ei~ 233 (383)
+|..+.+..|+.+...+++
T Consensus 323 Rf~~i~l~~p~~~e~~~iL 341 (854)
T 1qvr_A 323 RFQPVYVDEPTVEETISIL 341 (854)
T ss_dssp CCCCEEECCCCHHHHHHHH
T ss_pred CCceEEeCCCCHHHHHHHH
Confidence 9999999999988776665
No 30
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.00 E-value=6.2e-10 Score=116.83 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=80.1
Q ss_pred HHHHHHHHHc--cCCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCCCC---HHHHHHHHhhhhh-cC
Q psy6129 78 YITLAQALTM--SMGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQMD---YRGLGRIYKGLAQ-SG 141 (383)
Q Consensus 78 ~~~l~~al~~--~~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~~~---~~~l~~~l~g~~~-~g 141 (383)
...+...+.. ..+++|+||||||||++++.+|+.+ +.+++.++|..... ...+..++.-+.. .+
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~ 268 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGN 268 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHHHHhcCC
Confidence 3344455533 3456789999999999999999997 78888888822111 0124445544433 35
Q ss_pred ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHHhccccc
Q psy6129 142 SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKIQFRTVA 220 (383)
Q Consensus 142 ~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~~fr~v~ 220 (383)
..+++| ...+.. +.+.. . . + ..++.+++++|+ .|.+..++++.++++|..+.
T Consensus 269 ~iLfiD----~~~~~~-----------~~L~~---~--l-~------~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~ 321 (758)
T 3pxi_A 269 IILFID----AAIDAS-----------NILKP---S--L-A------RGELQCIGATTLDEYRKYIEKDAALERRFQPIQ 321 (758)
T ss_dssp CEEEEC----C-------------------CC---C--T-T------SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEE
T ss_pred EEEEEc----CchhHH-----------HHHHH---H--H-h------cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEE
Confidence 677777 111111 01100 0 0 1 235778888887 44444578999999999999
Q ss_pred cCCCCHHHHHHHHH
Q psy6129 221 MMVPDRQIIIRVKL 234 (383)
Q Consensus 221 ~~~Pd~~~i~ei~l 234 (383)
+..|+.+...+++-
T Consensus 322 v~~p~~~~~~~il~ 335 (758)
T 3pxi_A 322 VDQPSVDESIQILQ 335 (758)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHH
Confidence 99999998888764
No 31
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.00 E-value=7.7e-10 Score=104.20 Aligned_cols=129 Identities=15% Similarity=0.126 Sum_probs=83.0
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChhhHHHHH-
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELPVLSVAA- 161 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls~l~- 161 (383)
+.+|+||||||||++++++|+.++.+++.++|++..+ ...+..++.-+. ..++.+++||++.+...--+...
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 132 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE 132 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------C
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcch
Confidence 4678999999999999999999999999999965321 112334444333 34478899999988653211100
Q ss_pred ---HHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHHHHHHHH
Q psy6129 162 ---QQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 162 ---~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei~ 233 (383)
.....++..+.... . ...++.+++|+|.. ..|++.++++| +.+.+..||.+...+++
T Consensus 133 ~~~~~~~~ll~~l~~~~------~-----~~~~v~vi~atn~~----~~ld~al~~Rf~~~i~~~~p~~~~r~~il 193 (322)
T 3eie_A 133 ASRRIKTELLVQMNGVG------N-----DSQGVLVLGATNIP----WQLDSAIRRRFERRIYIPLPDLAARTTMF 193 (322)
T ss_dssp CTHHHHHHHHHHHGGGG------T-----SCCCEEEEEEESCG----GGSCHHHHHHCCEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc------c-----cCCceEEEEecCCh----hhCCHHHHcccCeEEEeCCCCHHHHHHHH
Confidence 11112222222110 0 12356788898863 46899999999 67788999987766554
No 32
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.00 E-value=2.1e-09 Score=104.43 Aligned_cols=179 Identities=16% Similarity=0.123 Sum_probs=112.5
Q ss_pred CCCCcCCCCCCccHHHHHH-HHHhCCcEEEEeCCCCCCHHHHH-H--------HHhhh--hhcCceEEecccccCChhhH
Q psy6129 90 GGSPCGPAGTGKTETVKDM-GKTLAKYVVVFNCSDQMDYRGLG-R--------IYKGL--AQSGSWGCFDEFNRIELPVL 157 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~l-a~~lg~~~~~~~c~~~~~~~~l~-~--------~l~g~--~~~g~w~~~dein~l~~~~l 157 (383)
..+++|+||| ||.+++.+ ++.+.+-.++- ....+...+. . +-.|. ...|..+|+||||+++++++
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~--g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~~~q 317 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVD--LRRTELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAPEPHR 317 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEEE--GGGCCHHHHSEEEEESSSEEEEECHHHHTTTSEEEEECCTTCCHHHH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEec--CCCCCccCceEEEEcCCCcccCCCeeEEcCCCeeehHhhhhCCHHHH
Confidence 5678999999 99999999 88877655432 1112222221 1 11343 34588999999999999998
Q ss_pred HHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCC-------CCcchHHHHHhcc--ccccCCCCHHH
Q psy6129 158 SVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAG-------RKELPENLKIQFR--TVAMMVPDRQI 228 (383)
Q Consensus 158 s~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g-------~~~lp~~l~~~fr--~v~~~~Pd~~~ 228 (383)
+.+ ++++.++ .+.. .|. +++..|.+++|+||-+.. ..+||+.+.++|- .+.+++||.+.
T Consensus 318 saL-------lEaMEe~--~VtI-~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 318 WAL-------MEAMDKG--TVTV-DGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp HHH-------HHHHHHS--EEEE-TTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred HHH-------HHHHhCC--cEEE-CCE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 876 4555554 3444 465 888999999999995411 2389999999994 33456776432
Q ss_pred -------------HHHHHHhhc----CCCchHHHHHHHHHHHHHHHHhcc-----CCCCCccChhhhHHHHHhcchh
Q psy6129 229 -------------IIRVKLASC----GFLENITLARKFYTLYKLCEEQLT-----KQVHYDFGLRNILSVLRSLGAA 283 (383)
Q Consensus 229 -------------i~ei~l~~~----gf~~~~~la~ki~~~~~~~~~~ls-----~~~hy~f~lR~l~~vi~~~~~~ 283 (383)
+.+...++. ...-+..+.+.++.+|...+..-. ....+-.+.|.+.++++.+.+.
T Consensus 386 d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~ 462 (506)
T 3f8t_A 386 PEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAH 462 (506)
T ss_dssp --------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHH
T ss_pred hhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHH
Confidence 222222222 223345677788888887765211 1134556789999999876543
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.00 E-value=9e-10 Score=102.75 Aligned_cols=162 Identities=13% Similarity=0.098 Sum_probs=100.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC-------cEEEEeCCCCCC------HHHHHHHHhhhhhcCceEEecccccC-----
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK-------YVVVFNCSDQMD------YRGLGRIYKGLAQSGSWGCFDEFNRI----- 152 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~-------~~~~~~c~~~~~------~~~l~~~l~g~~~~g~w~~~dein~l----- 152 (383)
.+++||+|||||++++.+|+.++. +++.++|+.-.. ...+...+..+ .+.++++||++.+
T Consensus 70 vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~ 147 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDN 147 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH--TTSEEEEETGGGSCCCC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc--CCCEEEEEChhhhccCCC
Confidence 568999999999999999998843 788888876532 11222333222 5779999999987
Q ss_pred ----ChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC-CCCCcchHHHHHhc-cccccCCCCH
Q psy6129 153 ----ELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY-AGRKELPENLKIQF-RTVAMMVPDR 226 (383)
Q Consensus 153 ----~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~-~g~~~lp~~l~~~f-r~v~~~~Pd~ 226 (383)
+.+++..+ ++.+.+. ..++.+++|+|+.. .....+++.|+++| ..+.+..|+.
T Consensus 148 ~~~~~~~~~~~L-------l~~l~~~--------------~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~ 206 (309)
T 3syl_A 148 ERDYGQEAIEIL-------LQVMENN--------------RDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSD 206 (309)
T ss_dssp --CCTHHHHHHH-------HHHHHHC--------------TTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCH
T ss_pred cccccHHHHHHH-------HHHHhcC--------------CCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCH
Confidence 44444333 2222222 14567788887531 11123468899999 8899999998
Q ss_pred HHHHHHH---HhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhc
Q psy6129 227 QIIIRVK---LASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSL 280 (383)
Q Consensus 227 ~~i~ei~---l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~ 280 (383)
+.+.++. +...+..-.....+.+....... ...++.-+.|.+++++..+
T Consensus 207 ~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 207 EELFEIAGHMLDDQNYQMTPEAETALRAYIGLR-----RNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH-----TTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-----ccCCCCCcHHHHHHHHHHH
Confidence 8776665 34455544444444444433222 1122222488888888754
No 34
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.98 E-value=3e-09 Score=100.04 Aligned_cols=126 Identities=17% Similarity=0.101 Sum_probs=90.5
Q ss_pred HHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhh------cCceEEecc
Q psy6129 78 YITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQ------SGSWGCFDE 148 (383)
Q Consensus 78 ~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~------~g~w~~~de 148 (383)
...+..++..+..+ ++.||+|||||++++.+|+.++.+++.+||+... ...+...+...+. .+..+++||
T Consensus 35 ~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDE 113 (324)
T 3u61_B 35 KETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDE 113 (324)
T ss_dssp HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEES
T ss_pred HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHHHHHHHHHHhhcccCCCCeEEEEEC
Confidence 34555566654432 4568899999999999999999999999997744 6666666665433 456889999
Q ss_pred cccCC-hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHH
Q psy6129 149 FNRIE-LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQ 227 (383)
Q Consensus 149 in~l~-~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~ 227 (383)
++.++ .+....+.. .+.+. .+++.+++|+|+. ..+++.++++|..+.+..|+.+
T Consensus 114 i~~l~~~~~~~~L~~-------~le~~--------------~~~~~iI~~~n~~----~~l~~~l~sR~~~i~~~~~~~~ 168 (324)
T 3u61_B 114 FDRSGLAESQRHLRS-------FMEAY--------------SSNCSIIITANNI----DGIIKPLQSRCRVITFGQPTDE 168 (324)
T ss_dssp CCCGGGHHHHHHHHH-------HHHHH--------------GGGCEEEEEESSG----GGSCTTHHHHSEEEECCCCCHH
T ss_pred CcccCcHHHHHHHHH-------HHHhC--------------CCCcEEEEEeCCc----cccCHHHHhhCcEEEeCCCCHH
Confidence 99988 665443322 12111 1346788899864 3789999999999999999966
Q ss_pred HH
Q psy6129 228 II 229 (383)
Q Consensus 228 ~i 229 (383)
..
T Consensus 169 e~ 170 (324)
T 3u61_B 169 DK 170 (324)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 35
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.98 E-value=2.6e-10 Score=94.37 Aligned_cols=129 Identities=9% Similarity=-0.039 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccC
Q psy6129 73 LTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRI 152 (383)
Q Consensus 73 ~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l 152 (383)
...+....+..+.....+.++.||+|||||++++.+++..+ +++.++|+...+ ......+. ...|..+++||++.+
T Consensus 12 ~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~~~~~~~--~a~~~~l~lDei~~l 87 (143)
T 3co5_A 12 AIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DMPMELLQ--KAEGGVLYVGDIAQY 87 (143)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HCHHHHHH--HTTTSEEEEEECTTC
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-HhhhhHHH--hCCCCeEEEeChHHC
Confidence 34555555556666778888999999999999999999888 889999985322 11111221 224678999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCC-CCcchHHHHHhccccccCCCC
Q psy6129 153 ELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAG-RKELPENLKIQFRTVAMMVPD 225 (383)
Q Consensus 153 ~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g-~~~lp~~l~~~fr~v~~~~Pd 225 (383)
+.+....+.+. +.++. ..++++++|+|..... ...+.+.|..++..+.+..|.
T Consensus 88 ~~~~q~~Ll~~-------l~~~~-------------~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 88 SRNIQTGITFI-------IGKAE-------------RCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp CHHHHHHHHHH-------HHHHT-------------TTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECC
T ss_pred CHHHHHHHHHH-------HHhCC-------------CCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCC
Confidence 99876654322 22221 3557888999864221 112777888888777776665
No 36
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.98 E-value=5.6e-10 Score=103.76 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=74.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhh-----hhcCceEEecccccCChhhHH-
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGL-----AQSGSWGCFDEFNRIELPVLS- 158 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~-----~~~g~w~~~dein~l~~~~ls- 158 (383)
.+++||||||||++++++|+.+|.+++.++|++-.+ ...+.+.+.-+ ...++.+++||++.+...--.
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~ 118 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGT 118 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCC
Confidence 457899999999999999999999999999875322 12233444333 335789999999877552110
Q ss_pred -H---HHHHH-HHHHHHHHhcCceeEecCCc-EEEecCCeeEEEeeCCCCCCCCcchHHHHH--hccccccCCCCHHHHH
Q psy6129 159 -V---AAQQV-AVVLAAKKEKKKSFVFTDGD-SIEMCPEFGIFITMNPGYAGRKELPENLKI--QFRTVAMMVPDRQIII 230 (383)
Q Consensus 159 -~---l~~~~-~~i~~~~~~~~~~~~~~~~~-~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~fr~v~~~~Pd~~~i~ 230 (383)
. ..+.+ ..++..+ ++...... ++. ...-..+..+++|+|.. ..+|+.+++ +|..+. ..|+.+...
T Consensus 119 ~~~~~~~~~v~~~Ll~~l-d~~~~~~~-~~~~~~~~~~~v~vI~ttN~~----~~ld~al~R~~R~d~~i-~~P~~~~r~ 191 (293)
T 3t15_A 119 TQYTVNNQMVNATLMNIA-DNPTNVQL-PGMYNKQENARVPIIVTGNDF----STLYAPLIRDGRMEKFY-WAPTREDRI 191 (293)
T ss_dssp -----CHHHHHHHHHHHH-HCCC------------CCCCCCEEEECSSC----CC--CHHHHHHHEEEEE-ECCCHHHHH
T ss_pred ccccchHHHHHHHHHHHh-cccccccc-ccccccccCCCcEEEEecCCc----ccCCHHHhCCCCCceeE-eCcCHHHHH
Confidence 0 01112 1222222 22221111 111 11224568899999953 478888886 553322 268877665
Q ss_pred HHH
Q psy6129 231 RVK 233 (383)
Q Consensus 231 ei~ 233 (383)
+|.
T Consensus 192 ~Il 194 (293)
T 3t15_A 192 GVC 194 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 37
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.97 E-value=2.1e-09 Score=103.94 Aligned_cols=131 Identities=14% Similarity=0.086 Sum_probs=83.8
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH------HHHHHHHhhhhh-cCceEEecccccCChhhHHH--
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY------RGLGRIYKGLAQ-SGSWGCFDEFNRIELPVLSV-- 159 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~------~~l~~~l~g~~~-~g~w~~~dein~l~~~~ls~-- 159 (383)
.+.+|+||+|||||++++.+|+.+|.+++.++|+...+. ..+..++..+.. .+..+++||++.+....-..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~ 228 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEH 228 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccc
Confidence 466789999999999999999999999999999875542 223444444433 34789999999873321100
Q ss_pred --HHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc-ccccCCCCHHHHHHHH
Q psy6129 160 --AAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR-TVAMMVPDRQIIIRVK 233 (383)
Q Consensus 160 --l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr-~v~~~~Pd~~~i~ei~ 233 (383)
.......++..+.... -....++.+++|+|+. ..+++.++++|. .+.+..|+.+...+++
T Consensus 229 ~~~~~~~~~ll~~l~~~~----------~~~~~~v~vI~atn~~----~~l~~~l~~R~~~~i~i~~p~~~~r~~il 291 (389)
T 3vfd_A 229 DASRRLKTEFLIEFDGVQ----------SAGDDRVLVMGATNRP----QELDEAVLRRFIKRVYVSLPNEETRLLLL 291 (389)
T ss_dssp CTHHHHHHHHHHHHHHHC---------------CEEEEEEESCG----GGCCHHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccc----------ccCCCCEEEEEecCCc----hhcCHHHHcCcceEEEcCCcCHHHHHHHH
Confidence 1111112222222111 0112457889999963 488999999995 7889999988776665
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.97 E-value=2e-09 Score=97.74 Aligned_cols=166 Identities=16% Similarity=0.146 Sum_probs=96.2
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChhhHH---
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELPVLS--- 158 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls--- 158 (383)
.+.+++||+|||||++++.+|+.++.+++.++|+...+ ...+..++..+. ..+..+++||++.+...--.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~ 119 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMS 119 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC------------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcccccccc
Confidence 34578999999999999999999999999999987543 122344444443 24678999999987432110
Q ss_pred -----HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHH
Q psy6129 159 -----VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIII 230 (383)
Q Consensus 159 -----~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ 230 (383)
.....+..++..+.... ...++.+++|+|.. ..+++.+++ +| +.+.+..|+.+...
T Consensus 120 ~~~~~~~~~~l~~ll~~~~~~~------------~~~~~~vi~~tn~~----~~ld~~l~~~~R~~~~i~i~~p~~~~r~ 183 (262)
T 2qz4_A 120 GFSNTEEEQTLNQLLVEMDGMG------------TTDHVIVLASTNRA----DILDGALMRPGRLDRHVFIDLPTLQERR 183 (262)
T ss_dssp -------CHHHHHHHHHHHTCC------------TTCCEEEEEEESCG----GGGGSGGGSTTSCCEEEECCSCCHHHHH
T ss_pred CccchhHHHHHHHHHHHhhCcC------------CCCCEEEEecCCCh----hhcCHHHhcCCcCCeEEEeCCcCHHHHH
Confidence 01111222222222110 12457788899853 467788887 88 67888999987665
Q ss_pred HHH---HhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhcc
Q psy6129 231 RVK---LASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLG 281 (383)
Q Consensus 231 ei~---l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~~ 281 (383)
+++ +...+........ ...+... ...|+.|++..+++.|.
T Consensus 184 ~il~~~~~~~~~~~~~~~~------~~~l~~~-----~~g~~~~~l~~l~~~a~ 226 (262)
T 2qz4_A 184 EIFEQHLKSLKLTQSSTFY------SQRLAEL-----TPGFSGADIANICNEAA 226 (262)
T ss_dssp HHHHHHHHHTTCCBTHHHH------HHHHHHT-----CTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhH------HHHHHHH-----CCCCCHHHHHHHHHHHH
Confidence 543 3444444332211 0111111 12345678887777543
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.95 E-value=3.9e-09 Score=100.81 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=84.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH------HHHHHHHhhhh-hcCceEEecccccCChhhHH--
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY------RGLGRIYKGLA-QSGSWGCFDEFNRIELPVLS-- 158 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~------~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls-- 158 (383)
..+.+|+||+|||||++++.+|+.++.+++.++|++..+. ..+..++.-+. ..+..+++||++.+....-.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~ 196 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE 196 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc
Confidence 3456789999999999999999999999999999875442 11333333332 34678999999877432110
Q ss_pred --HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc-ccccCCCCHHHHHHHH
Q psy6129 159 --VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR-TVAMMVPDRQIIIRVK 233 (383)
Q Consensus 159 --~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr-~v~~~~Pd~~~i~ei~ 233 (383)
........++..+... ......++.+++|+|+. ..+++.++++|. .+.+..|+.+...+++
T Consensus 197 ~~~~~~~~~~lL~~l~~~----------~~~~~~~v~vI~atn~~----~~l~~~l~~Rf~~~i~i~~p~~~~r~~il 260 (357)
T 3d8b_A 197 HESSRRIKTEFLVQLDGA----------TTSSEDRILVVGATNRP----QEIDEAARRRLVKRLYIPLPEASARKQIV 260 (357)
T ss_dssp -CHHHHHHHHHHHHHHC--------------CCCCEEEEEEESCG----GGBCHHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcc----------cccCCCCEEEEEecCCh----hhCCHHHHhhCceEEEeCCcCHHHHHHHH
Confidence 1111111222222211 11112467788899863 478999999996 6788999987665554
No 40
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.93 E-value=1.6e-09 Score=99.95 Aligned_cols=126 Identities=21% Similarity=0.180 Sum_probs=84.9
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH------HHHHHHHhhhhh-cCceEEecccccCC-------
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY------RGLGRIYKGLAQ-SGSWGCFDEFNRIE------- 153 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~------~~l~~~l~g~~~-~g~w~~~dein~l~------- 153 (383)
..+.+++||+|||||++++.+|+.++.+++.++|+...+. ..+..++.-+.. .+.++++||++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~ 130 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL 130 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcccc
Confidence 3456789999999999999999999999999999765431 123333333332 34689999999762
Q ss_pred ----hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCH
Q psy6129 154 ----LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDR 226 (383)
Q Consensus 154 ----~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~ 226 (383)
.+....+ ..++..+.... ...++.+++|+|+. ..+++.+++ +| +.+.+..|+.
T Consensus 131 ~~~~~~~~~~l----~~ll~~~~~~~------------~~~~~~vI~ttn~~----~~l~~~l~~~~Rf~~~i~~~~p~~ 190 (285)
T 3h4m_A 131 TGGDREVQRTL----MQLLAEMDGFD------------ARGDVKIIGATNRP----DILDPAILRPGRFDRIIEVPAPDE 190 (285)
T ss_dssp CGGGGHHHHHH----HHHHHHHHTTC------------SSSSEEEEEECSCG----GGBCHHHHSTTSEEEEEECCCCCH
T ss_pred CCccHHHHHHH----HHHHHHhhCCC------------CCCCEEEEEeCCCc----hhcCHHHcCCCcCCeEEEECCCCH
Confidence 2222222 22222222110 12467889999864 578999988 77 5788999998
Q ss_pred HHHHHHH
Q psy6129 227 QIIIRVK 233 (383)
Q Consensus 227 ~~i~ei~ 233 (383)
+...+++
T Consensus 191 ~~r~~il 197 (285)
T 3h4m_A 191 KGRLEIL 197 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766655
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.92 E-value=2.7e-09 Score=102.13 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=51.1
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHH----HHHhhh---------hhcCceEEecccccCCh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLG----RIYKGL---------AQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~----~~l~g~---------~~~g~w~~~dein~l~~ 154 (383)
..+.+++||||||||++++.+|+.++.+++.++|+.......++ ..+.++ ...++.+++||++.++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~ 130 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR 130 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc
Confidence 34567899999999999999999999999999998755432222 222221 13567899999998876
Q ss_pred h
Q psy6129 155 P 155 (383)
Q Consensus 155 ~ 155 (383)
+
T Consensus 131 ~ 131 (363)
T 3hws_A 131 K 131 (363)
T ss_dssp C
T ss_pred c
Confidence 5
No 42
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.89 E-value=3.4e-09 Score=101.87 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=47.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHH--------HHHHHhhh-----hhcCceEEecccccCChh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRG--------LGRIYKGL-----AQSGSWGCFDEFNRIELP 155 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~--------l~~~l~g~-----~~~g~w~~~dein~l~~~ 155 (383)
.+.+++||+|||||++++.+|+.+|.+++.++|+....... +.+.+... ...+.++++||++.+..+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 152 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh
Confidence 35668999999999999999999999999999987553222 22222211 235789999999998876
No 43
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.89 E-value=2.3e-09 Score=100.14 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHh-------------
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYK------------- 135 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~------------- 135 (383)
|...+....+..+.....+++++||+|||||.+++.+++.. +.|++.+||+...+ ..+..-+-
T Consensus 9 ~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~~~~lfg~~~g~~tg~~~~ 87 (304)
T 1ojl_A 9 PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLLESELFGHEKGAFTGADKR 87 (304)
T ss_dssp HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHHHHHHTCCCSSCCC---CC
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHHHHHhcCccccccCchhhh
Confidence 34455555555554566778899999999999999999976 56899999987543 22222211
Q ss_pred --hh--hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC---CCCcc
Q psy6129 136 --GL--AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA---GRKEL 208 (383)
Q Consensus 136 --g~--~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~---g~~~l 208 (383)
|. ...|..+++||++.++.+....+ ++.+.++ .+.. .|.....+.++++++|+|+... ....+
T Consensus 88 ~~g~~~~a~~g~L~LDEi~~l~~~~q~~L-------l~~l~~~--~~~~-~g~~~~~~~~~riI~atn~~l~~~v~~g~f 157 (304)
T 1ojl_A 88 REGRFVEADGGTLFLDEIGDISPLMQVRL-------LRAIQER--EVQR-VGSNQTISVDVRLIAATHRDLAEEVSAGRF 157 (304)
T ss_dssp CCCHHHHHTTSEEEEESCTTCCHHHHHHH-------HHHHHSS--BCCB-TTBCCCCBCCCEEEEEESSCHHHHHHHTSS
T ss_pred hcCHHHhcCCCEEEEeccccCCHHHHHHH-------HHHHhcC--Eeee-cCCcccccCCeEEEEecCccHHHHHHhCCc
Confidence 11 13467899999999998765543 3333333 2222 3444445678999999997411 11245
Q ss_pred hHHHHHhccccccCCCCH
Q psy6129 209 PENLKIQFRTVAMMVPDR 226 (383)
Q Consensus 209 p~~l~~~fr~v~~~~Pd~ 226 (383)
.+.|..+|..+.+..|+.
T Consensus 158 r~~L~~Rl~~~~i~lPpL 175 (304)
T 1ojl_A 158 RQDLYYRLNVVAIEMPSL 175 (304)
T ss_dssp CHHHHHHHSSEEEECCCS
T ss_pred HHHHHhhcCeeEEeccCH
Confidence 677888887777766763
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.85 E-value=5.2e-08 Score=93.05 Aligned_cols=189 Identities=12% Similarity=0.055 Sum_probs=107.3
Q ss_pred ceeechhhHHHHHHHHHHHHccCC----CCCcCCCCCCccHHHHHHHHHhCC--cEEEEeCCCCC----CH---------
Q psy6129 67 RLVITPLTDRCYITLAQALTMSMG----GSPCGPAGTGKTETVKDMGKTLAK--YVVVFNCSDQM----DY--------- 127 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~~~~----~~l~Gp~GtGKT~~i~~la~~lg~--~~~~~~c~~~~----~~--------- 127 (383)
.+|-.....+....+..++..+.. .+++||+|||||++++.+|+.++. +++.++|.... ..
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFR 124 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHH
Confidence 455555555666666666765543 568999999999999999999985 77788875411 11
Q ss_pred ------------------------------------------HHHHHHHhhh----hhcC------ceEEecccccCChh
Q psy6129 128 ------------------------------------------RGLGRIYKGL----AQSG------SWGCFDEFNRIELP 155 (383)
Q Consensus 128 ------------------------------------------~~l~~~l~g~----~~~g------~w~~~dein~l~~~ 155 (383)
..+.+.+..+ ...| ..+++||++.++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~ 204 (368)
T 3uk6_A 125 RSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIE 204 (368)
T ss_dssp HSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHH
T ss_pred HHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChH
Confidence 1122222211 2223 48899999999887
Q ss_pred hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHH-
Q psy6129 156 VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKL- 234 (383)
Q Consensus 156 ~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l- 234 (383)
....+. +.+.+....+. .+-.++...++.+.+. .....+++.+++||..+.+..|+.+.+.+++.
T Consensus 205 ~~~~L~-------~~le~~~~~~~-----ii~t~~~~~~i~~t~~--~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 205 SFSFLN-------RALESDMAPVL-----IMATNRGITRIRGTSY--QSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp HHHHHH-------HHTTCTTCCEE-----EEEESCSEEECBTSSC--EEETTCCHHHHTTEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHH-------HHhhCcCCCee-----eeecccceeeeeccCC--CCcccCCHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 665442 22211111100 0011122222222211 11257899999999999999999888777654
Q ss_pred --hhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhcc
Q psy6129 235 --ASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLG 281 (383)
Q Consensus 235 --~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~~ 281 (383)
...|..-.....+.+... +.. .++|.+..++..+.
T Consensus 271 ~~~~~~~~~~~~~l~~l~~~---~~~---------G~~r~~~~ll~~a~ 307 (368)
T 3uk6_A 271 RCEEEDVEMSEDAYTVLTRI---GLE---------TSLRYAIQLITAAS 307 (368)
T ss_dssp HHHHTTCCBCHHHHHHHHHH---HHH---------SCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHH---hcC---------CCHHHHHHHHHHHH
Confidence 233443333333333222 111 35777777777654
No 45
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.85 E-value=1.5e-09 Score=93.15 Aligned_cols=140 Identities=17% Similarity=0.163 Sum_probs=83.6
Q ss_pred HHHHHHHHHcc--CCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCCC----CHHH----HHHHHhhh
Q psy6129 78 YITLAQALTMS--MGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQM----DYRG----LGRIYKGL 137 (383)
Q Consensus 78 ~~~l~~al~~~--~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~~----~~~~----l~~~l~g~ 137 (383)
...+..++... .+.+++||+|||||++++.+++.+ +.+++.++|+... .... +.+++..+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL 110 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHH
Confidence 34444455433 346689999999999999999987 7888888886532 1111 23333333
Q ss_pred hh--cCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHH
Q psy6129 138 AQ--SGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKI 214 (383)
Q Consensus 138 ~~--~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~ 214 (383)
.. .+.++++||++.+....-+.....+...+..+.+. .++.+++|+|+ .+.....+++.+++
T Consensus 111 ~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~ 175 (195)
T 1jbk_A 111 AKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------------GELHCVGATTLDEYRQYIEKDAALER 175 (195)
T ss_dssp HHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT---------------TSCCEEEEECHHHHHHHTTTCHHHHT
T ss_pred hhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc---------------CCeEEEEeCCHHHHHHHHhcCHHHHH
Confidence 22 34578999999885321000000011111111111 23556777765 22223367899999
Q ss_pred hccccccCCCCHHHHHHH
Q psy6129 215 QFRTVAMMVPDRQIIIRV 232 (383)
Q Consensus 215 ~fr~v~~~~Pd~~~i~ei 232 (383)
+|..+.+..|+.+...++
T Consensus 176 r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 176 RFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp TEEEEECCCCCHHHHHTT
T ss_pred HhceeecCCCCHHHHHHH
Confidence 999999999998876554
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.85 E-value=2e-09 Score=105.90 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=82.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh-CCcEEEEeCCCCCCH------HHHHHHHhhhh-hcCceEEecccccCChhhHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL-AKYVVVFNCSDQMDY------RGLGRIYKGLA-QSGSWGCFDEFNRIELPVLSVA 160 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l-g~~~~~~~c~~~~~~------~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls~l 160 (383)
.+.+|+||||||||++++++|+.+ +.+++.++|++..+. ..+..++.-+. ...+.+++||++.+...--...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~ 247 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 247 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc
Confidence 456789999999999999999999 899999999875432 11334443333 3457899999998733100000
Q ss_pred HHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHHHHHHHH
Q psy6129 161 AQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei~ 233 (383)
......+.+.+...- ++.. .-..++.+++|+|.. ..+++.++++| +.+.+..||.+...+++
T Consensus 248 ~~~~~~~~~~lL~~l------~~~~-~~~~~v~vI~atn~~----~~ld~al~rRf~~~i~i~~P~~~~r~~il 310 (444)
T 2zan_A 248 SEAARRIKTEFLVQM------QGVG-VDNDGILVLGATNIP----WVLDSAIRRRFEKRIYIPLPEAHARAAMF 310 (444)
T ss_dssp CGGGHHHHHHHHTTT------TCSS-CCCSSCEEEEEESCG----GGSCHHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH------hCcc-cCCCCEEEEecCCCc----cccCHHHHhhcceEEEeCCcCHHHHHHHH
Confidence 000011112222211 1100 012567888899964 47899999999 57889999987665554
No 47
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.82 E-value=4.7e-08 Score=90.59 Aligned_cols=133 Identities=16% Similarity=0.117 Sum_probs=83.0
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC-----HHH-HHHHHhhhh-hcCceEEecccccCChhhHHHH
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD-----YRG-LGRIYKGLA-QSGSWGCFDEFNRIELPVLSVA 160 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~-----~~~-l~~~l~g~~-~~g~w~~~dein~l~~~~ls~l 160 (383)
..+.+++||+|||||++++.+|+.++.+++.++|+.... ... +..++.-+. ..+..+++||++.+....-...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~ 133 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE 133 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC----
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc
Confidence 345678999999999999999999999999999987543 222 233333332 3467899999998754321110
Q ss_pred ----HHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc-cccccCCCCHHHHHHHH
Q psy6129 161 ----AQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 161 ----~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f-r~v~~~~Pd~~~i~ei~ 233 (383)
......++..+...... .....+.+++|+|.. ..+++.++++| +.+.+..|+.+...+++
T Consensus 134 ~~~~~~~~~~ll~~l~~~~~~---------~~~~~v~vi~~tn~~----~~l~~~l~~R~~~~i~~~~p~~~~r~~il 198 (297)
T 3b9p_A 134 HEASRRLKTEFLVEFDGLPGN---------PDGDRIVVLAATNRP----QELDEAALRRFTKRVYVSLPDEQTRELLL 198 (297)
T ss_dssp -CCSHHHHHHHHHHHHHCC---------------CEEEEEEESCG----GGBCHHHHHHCCEEEECCCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccccc---------CCCCcEEEEeecCCh----hhCCHHHHhhCCeEEEeCCcCHHHHHHHH
Confidence 01111122222221100 011346788888853 37899999999 56788899977655543
No 48
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=3.2e-08 Score=93.74 Aligned_cols=131 Identities=19% Similarity=0.117 Sum_probs=89.8
Q ss_pred HHHHHHHHcc--CCCCCcCCCCCCccHHHHHHHHHhCC------cEEEEeCCCCCCHHHHHHHHhhhh------------
Q psy6129 79 ITLAQALTMS--MGGSPCGPAGTGKTETVKDMGKTLAK------YVVVFNCSDQMDYRGLGRIYKGLA------------ 138 (383)
Q Consensus 79 ~~l~~al~~~--~~~~l~Gp~GtGKT~~i~~la~~lg~------~~~~~~c~~~~~~~~l~~~l~g~~------------ 138 (383)
..+..++..+ ...+++||+|||||++++.+|+.++. .+..++|+.......+...+.+..
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDL 126 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhc
Confidence 3445555554 23567899999999999999998753 477889988776666555443322
Q ss_pred -----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHH
Q psy6129 139 -----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLK 213 (383)
Q Consensus 139 -----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~ 213 (383)
..+..+++||++.++.+..+.+. +.+.+.. ++..+++++|.. ..+++.++
T Consensus 127 ~~~~~~~~~vliiDE~~~l~~~~~~~Ll-------~~le~~~--------------~~~~~il~~~~~----~~l~~~l~ 181 (353)
T 1sxj_D 127 ENYPCPPYKIIILDEADSMTADAQSALR-------RTMETYS--------------GVTRFCLICNYV----TRIIDPLA 181 (353)
T ss_dssp HHSCCCSCEEEEETTGGGSCHHHHHHHH-------HHHHHTT--------------TTEEEEEEESCG----GGSCHHHH
T ss_pred ccCCCCCceEEEEECCCccCHHHHHHHH-------HHHHhcC--------------CCceEEEEeCch----hhCcchhh
Confidence 12347889999999987655432 2222221 235566677742 46889999
Q ss_pred HhccccccCCCCHHHHHHHHH
Q psy6129 214 IQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 214 ~~fr~v~~~~Pd~~~i~ei~l 234 (383)
+++..+.+..|+.+.+.+++.
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~ 202 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLR 202 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHH
Confidence 999999998888877766653
No 49
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=5.1e-08 Score=91.05 Aligned_cols=133 Identities=17% Similarity=0.092 Sum_probs=93.7
Q ss_pred HHHHHHHHHHccCC--CCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHHHHHHHHhhhh-------hc-C
Q psy6129 77 CYITLAQALTMSMG--GSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRGLGRIYKGLA-------QS-G 141 (383)
Q Consensus 77 ~~~~l~~al~~~~~--~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~~l~~~l~g~~-------~~-g 141 (383)
....+..++..+.. .+++||+|+|||++++.+++.+ +.+++.++|+.......+...+.... .. .
T Consensus 29 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 108 (323)
T 1sxj_B 29 TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH 108 (323)
T ss_dssp HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCC
T ss_pred HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCc
Confidence 34455566665543 4578999999999999999986 34578889988777777766655433 22 4
Q ss_pred ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcccccc
Q psy6129 142 SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAM 221 (383)
Q Consensus 142 ~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~ 221 (383)
..+++||++.+..+....+. ..+.+. .+++.+++++|+ ...+++.+++++..+.+
T Consensus 109 ~viiiDe~~~l~~~~~~~L~-------~~le~~--------------~~~~~~il~~~~----~~~l~~~l~sr~~~i~~ 163 (323)
T 1sxj_B 109 KIVILDEADSMTAGAQQALR-------RTMELY--------------SNSTRFAFACNQ----SNKIIEPLQSQCAILRY 163 (323)
T ss_dssp EEEEEESGGGSCHHHHHTTH-------HHHHHT--------------TTTEEEEEEESC----GGGSCHHHHTTSEEEEC
T ss_pred eEEEEECcccCCHHHHHHHH-------HHHhcc--------------CCCceEEEEeCC----hhhchhHHHhhceEEee
Confidence 67889999999876544332 222221 134567777775 35788999999999999
Q ss_pred CCCCHHHHHHHHH
Q psy6129 222 MVPDRQIIIRVKL 234 (383)
Q Consensus 222 ~~Pd~~~i~ei~l 234 (383)
..|+.+.+.+++.
T Consensus 164 ~~~~~~~~~~~l~ 176 (323)
T 1sxj_B 164 SKLSDEDVLKRLL 176 (323)
T ss_dssp CCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 9999887776653
No 50
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.79 E-value=2.2e-08 Score=98.35 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=85.6
Q ss_pred HHHHHHccCC--CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhh-----hcCceEEecccccCC
Q psy6129 81 LAQALTMSMG--GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLA-----QSGSWGCFDEFNRIE 153 (383)
Q Consensus 81 l~~al~~~~~--~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~-----~~g~w~~~dein~l~ 153 (383)
+..++..+.. .+|+||+|||||++++.+|+.++.+++.+++.. .....+...+..+. ..+..+++||+++++
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~ 119 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT-SGVKEIREAIERARQNRNAGRRTILFVDEVHRFN 119 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC
Confidence 4445555443 578999999999999999999999999999865 44556666665543 356789999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEee--CCCCCCCCcchHHHHHhccccccCCCCHHHHHH
Q psy6129 154 LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITM--NPGYAGRKELPENLKIQFRTVAMMVPDRQIIIR 231 (383)
Q Consensus 154 ~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~--np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~e 231 (383)
.+....+ +..+.++ .+.+++++ || ...+++.|.++++.+.+..|+.+.+.+
T Consensus 120 ~~~q~~L-------L~~le~~----------------~v~lI~att~n~----~~~l~~aL~sR~~v~~l~~l~~edi~~ 172 (447)
T 3pvs_A 120 KSQQDAF-------LPHIEDG----------------TITFIGATTENP----SFELNSALLSRARVYLLKSLSTEDIEQ 172 (447)
T ss_dssp -----CC-------HHHHHTT----------------SCEEEEEESSCG----GGSSCHHHHTTEEEEECCCCCHHHHHH
T ss_pred HHHHHHH-------HHHHhcC----------------ceEEEecCCCCc----ccccCHHHhCceeEEeeCCcCHHHHHH
Confidence 7654332 2222221 12344443 43 247899999999999999999887776
Q ss_pred HH
Q psy6129 232 VK 233 (383)
Q Consensus 232 i~ 233 (383)
++
T Consensus 173 il 174 (447)
T 3pvs_A 173 VL 174 (447)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.78 E-value=7.3e-08 Score=85.47 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=87.2
Q ss_pred HHHHHHHHHHccC---CCCCcCCCCCCccHHHHHHHHHhCC------------------------cEEEEeCCCCCCHHH
Q psy6129 77 CYITLAQALTMSM---GGSPCGPAGTGKTETVKDMGKTLAK------------------------YVVVFNCSDQMDYRG 129 (383)
Q Consensus 77 ~~~~l~~al~~~~---~~~l~Gp~GtGKT~~i~~la~~lg~------------------------~~~~~~c~~~~~~~~ 129 (383)
....+..++..+. ..+++||+|+|||++++.+++.++. .++.+++........
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVED 110 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHH
Confidence 3445555565544 3568899999999999999998854 234455554444444
Q ss_pred HHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCC
Q psy6129 130 LGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAG 204 (383)
Q Consensus 130 l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g 204 (383)
+..++..+. ....++++||++.++.+.+..+.. .+.+. .++..+++|+|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~-------~l~~~--------------~~~~~~i~~t~~---- 165 (250)
T 1njg_A 111 TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK-------TLEEP--------------PEHVKFLLATTD---- 165 (250)
T ss_dssp HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHH-------HHHSC--------------CTTEEEEEEESC----
T ss_pred HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHH-------HHhcC--------------CCceEEEEEeCC----
Confidence 555554332 234688999999998876554422 22111 245667777774
Q ss_pred CCcchHHHHHhccccccCCCCHHHHHHHH
Q psy6129 205 RKELPENLKIQFRTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 205 ~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~ 233 (383)
...+++.+++++..+.+..|+.+.+.+++
T Consensus 166 ~~~~~~~l~~r~~~i~l~~l~~~e~~~~l 194 (250)
T 1njg_A 166 PQKLPVTILSRCLQFHLKALDVEQIRHQL 194 (250)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred hHhCCHHHHHHhhhccCCCCCHHHHHHHH
Confidence 24678889999999999988887766654
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.78 E-value=1.7e-07 Score=83.40 Aligned_cols=144 Identities=8% Similarity=-0.020 Sum_probs=87.1
Q ss_pred eeechhhHHHHHHHHHHHHc--cCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhhhhhcCc
Q psy6129 68 LVITPLTDRCYITLAQALTM--SMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKGLAQSGS 142 (383)
Q Consensus 68 lv~Tp~t~r~~~~l~~al~~--~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g~~~~g~ 142 (383)
++..+.....+..+..+... ..+.+++||+|||||++++.+++.++ .+++.++|++..+ .+.+.+. ......
T Consensus 30 ~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~ 106 (242)
T 3bos_A 30 YYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS--ISTALLE-GLEQFD 106 (242)
T ss_dssp SCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG--SCGGGGT-TGGGSS
T ss_pred ccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--HHHHHHH-hccCCC
Confidence 44333344555555555553 44566899999999999999998875 6778888865322 1122222 124567
Q ss_pred eEEecccccCChhh--HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc---c
Q psy6129 143 WGCFDEFNRIELPV--LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF---R 217 (383)
Q Consensus 143 w~~~dein~l~~~~--ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f---r 217 (383)
.+++||++.++.+. ...+.. +++...+. + ...+++|+|........+.+.++++| .
T Consensus 107 vliiDe~~~~~~~~~~~~~l~~----~l~~~~~~--------~-------~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~ 167 (242)
T 3bos_A 107 LICIDDVDAVAGHPLWEEAIFD----LYNRVAEQ--------K-------RGSLIVSASASPMEAGFVLPDLVSRMHWGL 167 (242)
T ss_dssp EEEEETGGGGTTCHHHHHHHHH----HHHHHHHH--------C-------SCEEEEEESSCTTTTTCCCHHHHHHHHHSE
T ss_pred EEEEeccccccCCHHHHHHHHH----HHHHHHHc--------C-------CCeEEEEcCCCHHHHHHhhhhhhhHhhcCc
Confidence 89999999887654 333222 22222211 1 12356666643322335568899999 7
Q ss_pred ccccCCCCHHHHHHHH
Q psy6129 218 TVAMMVPDRQIIIRVK 233 (383)
Q Consensus 218 ~v~~~~Pd~~~i~ei~ 233 (383)
.+.+..|+.+...+++
T Consensus 168 ~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 168 TYQLQPMMDDEKLAAL 183 (242)
T ss_dssp EEECCCCCGGGHHHHH
T ss_pred eEEeCCCCHHHHHHHH
Confidence 8889888876665554
No 53
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.78 E-value=2.2e-08 Score=90.87 Aligned_cols=128 Identities=18% Similarity=0.164 Sum_probs=82.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhhh-cCceEEecccccCChhhHH---
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLAQ-SGSWGCFDEFNRIELPVLS--- 158 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~~-~g~w~~~dein~l~~~~ls--- 158 (383)
.+.+++||+|||||++++.+|+.++.+++.++|+.-.+ ...+..++..+.. ..+.+++||++.+..+..+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~ 125 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG 125 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcC
Confidence 45678999999999999999999999999999987432 3345555554433 3468899999866442110
Q ss_pred ----HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHH
Q psy6129 159 ----VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIR 231 (383)
Q Consensus 159 ----~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~e 231 (383)
.....+..++..+... . -..+..+++|+|.. ..+++.+.+ +| +.+.+..||.+.-.+
T Consensus 126 ~~~~~~~~~~~~ll~~l~~~-------~-----~~~~~~vI~~tn~~----~~l~~~l~r~~rf~~~i~i~~P~~~~r~~ 189 (257)
T 1lv7_A 126 GGHDEREQTLNQMLVEMDGF-------E-----GNEGIIVIAATNRP----DVLDPALLRPGRFDRQVVVGLPDVRGREQ 189 (257)
T ss_dssp CTTCHHHHHHHHHHHHHHTC-------C-----SSSCEEEEEEESCT----TTSCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhCc-------c-----cCCCEEEEEeeCCc----hhCCHHHcCCCcCCeEEEeCCCCHHHHHH
Confidence 0111122222222211 0 12456788888864 367777776 66 678888999765544
Q ss_pred H
Q psy6129 232 V 232 (383)
Q Consensus 232 i 232 (383)
+
T Consensus 190 i 190 (257)
T 1lv7_A 190 I 190 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.77 E-value=2e-09 Score=92.01 Aligned_cols=124 Identities=18% Similarity=0.191 Sum_probs=77.4
Q ss_pred HHHHHHHHc--cCCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCCCC----HH----HHHHHHhhhh
Q psy6129 79 ITLAQALTM--SMGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQMD----YR----GLGRIYKGLA 138 (383)
Q Consensus 79 ~~l~~al~~--~~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~~~----~~----~l~~~l~g~~ 138 (383)
..+..++.. ..+.+++||+|||||++++.+++.+ +.+++.++|+.... .. .+.+++..+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQ 111 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHH
Confidence 344444443 3345688999999999999999987 77788887754321 11 1333333333
Q ss_pred h--cCceEEecccccCC---------hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC-CCCCC
Q psy6129 139 Q--SGSWGCFDEFNRIE---------LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG-YAGRK 206 (383)
Q Consensus 139 ~--~g~w~~~dein~l~---------~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~-~~g~~ 206 (383)
. .+..+++||++.+. .++...+. .+.+. ..+.+++++|+. +....
T Consensus 112 ~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~--------~~~~~---------------~~~~ii~~~~~~~~~~~~ 168 (187)
T 2p65_A 112 DAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILK--------PMLAR---------------GELRCIGATTVSEYRQFI 168 (187)
T ss_dssp HTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHH--------HHHHT---------------TCSCEEEEECHHHHHHHT
T ss_pred hcCCceEEEEeCHHHhcccccccccchHHHHHHH--------HHHhc---------------CCeeEEEecCHHHHHHHH
Confidence 3 34688999999886 23322221 11111 235677888752 11123
Q ss_pred cchHHHHHhccccccCCCC
Q psy6129 207 ELPENLKIQFRTVAMMVPD 225 (383)
Q Consensus 207 ~lp~~l~~~fr~v~~~~Pd 225 (383)
.+++.++++|..+.+..|+
T Consensus 169 ~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 169 EKDKALERRFQQILVEQPS 187 (187)
T ss_dssp TTCHHHHHHEEEEECCSCC
T ss_pred hccHHHHHhcCcccCCCCC
Confidence 5789999999999988886
No 55
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=6.4e-08 Score=90.50 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=88.2
Q ss_pred HHHHHHHHHccC--CCCCcCCCCCCccHHHHHHHHHhC-----CcEEEEeCCCCCCHHHHHHHHhhhh-------hcCce
Q psy6129 78 YITLAQALTMSM--GGSPCGPAGTGKTETVKDMGKTLA-----KYVVVFNCSDQMDYRGLGRIYKGLA-------QSGSW 143 (383)
Q Consensus 78 ~~~l~~al~~~~--~~~l~Gp~GtGKT~~i~~la~~lg-----~~~~~~~c~~~~~~~~l~~~l~g~~-------~~g~w 143 (383)
...+..++..+. +.+++||+|||||++++.+++.++ .+++.++|++......+...+.... ..+..
T Consensus 34 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 113 (327)
T 1iqp_A 34 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKI 113 (327)
T ss_dssp HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEE
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeE
Confidence 344455565543 356789999999999999999873 2477889876544333333332221 23568
Q ss_pred EEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCC
Q psy6129 144 GCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMV 223 (383)
Q Consensus 144 ~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~ 223 (383)
+++||++.++.+....+.. .+.+. .+++.+++|+|.. ..+++.+++++..+.+..
T Consensus 114 liiDe~~~l~~~~~~~L~~-------~le~~--------------~~~~~~i~~~~~~----~~l~~~l~sr~~~~~~~~ 168 (327)
T 1iqp_A 114 IFLDEADALTQDAQQALRR-------TMEMF--------------SSNVRFILSCNYS----SKIIEPIQSRCAIFRFRP 168 (327)
T ss_dssp EEEETGGGSCHHHHHHHHH-------HHHHT--------------TTTEEEEEEESCG----GGSCHHHHHTEEEEECCC
T ss_pred EEEeCCCcCCHHHHHHHHH-------HHHhc--------------CCCCeEEEEeCCc----cccCHHHHhhCcEEEecC
Confidence 8899999998876554422 22221 1345677787753 468899999999999988
Q ss_pred CCHHHHHHHH
Q psy6129 224 PDRQIIIRVK 233 (383)
Q Consensus 224 Pd~~~i~ei~ 233 (383)
|+.+.+.+++
T Consensus 169 l~~~~~~~~l 178 (327)
T 1iqp_A 169 LRDEDIAKRL 178 (327)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9887776654
No 56
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.75 E-value=5.2e-08 Score=93.42 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=79.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHh-----------CCcEEEEeCCCCC-CHHH-HHHHHh----------------------
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL-----------AKYVVVFNCSDQM-DYRG-LGRIYK---------------------- 135 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l-----------g~~~~~~~c~~~~-~~~~-l~~~l~---------------------- 135 (383)
.+++||+|||||++++.+++.+ +.+++.++|.... +... +.+++.
T Consensus 48 vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 127 (384)
T 2qby_B 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIK 127 (384)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 5678999999999999999988 8899999998755 4433 222211
Q ss_pred h-hhhcCceEEecccccCChhh-HHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHH
Q psy6129 136 G-LAQSGSWGCFDEFNRIELPV-LSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLK 213 (383)
Q Consensus 136 g-~~~~g~w~~~dein~l~~~~-ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~ 213 (383)
. +...+..+++||++.+.... ... ++..+.... +++.+++|+|... ....+++.++
T Consensus 128 ~~l~~~~~vlilDEi~~l~~~~~~~~-------~l~~l~~~~--------------~~~~iI~~t~~~~-~~~~l~~~l~ 185 (384)
T 2qby_B 128 NGTRNIRAIIYLDEVDTLVKRRGGDI-------VLYQLLRSD--------------ANISVIMISNDIN-VRDYMEPRVL 185 (384)
T ss_dssp HHHSSSCEEEEEETTHHHHHSTTSHH-------HHHHHHTSS--------------SCEEEEEECSSTT-TTTTSCHHHH
T ss_pred HHhccCCCEEEEECHHHhccCCCCce-------eHHHHhcCC--------------cceEEEEEECCCc-hHhhhCHHHH
Confidence 1 12233488999999664321 111 012222110 4577888887531 2356788898
Q ss_pred Hhc-cccccCCCCHHHHHHHHH
Q psy6129 214 IQF-RTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 214 ~~f-r~v~~~~Pd~~~i~ei~l 234 (383)
++| ..+.+..++.+.+.+++.
T Consensus 186 sr~~~~i~l~~l~~~~~~~il~ 207 (384)
T 2qby_B 186 SSLGPSVIFKPYDAEQLKFILS 207 (384)
T ss_dssp HTCCCEEEECCCCHHHHHHHHH
T ss_pred hcCCCeEEECCCCHHHHHHHHH
Confidence 887 577888888888777764
No 57
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.74 E-value=1.9e-08 Score=93.73 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=81.5
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC------CHHHHHHHHhhhh-hcCceEEecccccCChhhHH--
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM------DYRGLGRIYKGLA-QSGSWGCFDEFNRIELPVLS-- 158 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~------~~~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls-- 158 (383)
..+.+|+||+|||||++++.+|+.++.+++.++|++-. ....+..++..+. ...+.+++||++.+....-.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~ 128 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 128 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCc
Confidence 44567899999999999999999999999999986432 1122334444443 24578899999965432100
Q ss_pred -----HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHH
Q psy6129 159 -----VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIII 230 (383)
Q Consensus 159 -----~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ 230 (383)
........++..+..- . ...++.+++|+|.. ..+++.+++ +| +.+.+..||.+...
T Consensus 129 ~~~~~~~~~~~~~lL~~l~~~-------~-----~~~~v~vi~atn~~----~~ld~al~r~gRf~~~i~i~~p~~~~r~ 192 (301)
T 3cf0_A 129 GDGGGAADRVINQILTEMDGM-------S-----TKKNVFIIGATNRP----DIIDPAILRPGRLDQLIYIPLPDEKSRV 192 (301)
T ss_dssp CCSSCSCCHHHHHHHHHHHSS-------C-----TTSSEEEEEEESCG----GGSCGGGGSTTSSCEEEECCCCCHHHHH
T ss_pred CCcchHHHHHHHHHHHHhhcc-------c-----CCCCEEEEEecCCc----cccChHHhcCCccceEEecCCcCHHHHH
Confidence 0000011222222211 0 12457889999863 457788877 77 57888999987655
Q ss_pred HHH
Q psy6129 231 RVK 233 (383)
Q Consensus 231 ei~ 233 (383)
+++
T Consensus 193 ~il 195 (301)
T 3cf0_A 193 AIL 195 (301)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 58
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.72 E-value=1.8e-07 Score=87.76 Aligned_cols=122 Identities=13% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHH-HHH-------HhhhhhcCceEEecccccCCh--h
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGL-GRI-------YKGLAQSGSWGCFDEFNRIEL--P 155 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l-~~~-------l~g~~~~g~w~~~dein~l~~--~ 155 (383)
.+.+++||+|||||++++.+++.+ |.+++.++|.... ..+ ..+ +.........+++||++.++. .
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~ 115 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA--QAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKER 115 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH--HHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH--HHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChH
Confidence 355688999999999999999998 8899999986531 111 111 112234578999999998876 3
Q ss_pred hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc---cccccCCCCHHHHHHH
Q psy6129 156 VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF---RTVAMMVPDRQIIIRV 232 (383)
Q Consensus 156 ~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f---r~v~~~~Pd~~~i~ei 232 (383)
.... +..+++...+. + ..+++|++.....-..+++.|.++| ..+.+.. +.+...++
T Consensus 116 ~~~~----l~~~l~~~~~~--------~--------~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 116 TQIE----FFHIFNTLYLL--------E--------KQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKI 174 (324)
T ss_dssp HHHH----HHHHHHHHHHT--------T--------CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHH
T ss_pred HHHH----HHHHHHHHHHC--------C--------CeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHH
Confidence 3222 22222222221 1 2345555533222346899999999 5677766 77766655
Q ss_pred H
Q psy6129 233 K 233 (383)
Q Consensus 233 ~ 233 (383)
+
T Consensus 175 l 175 (324)
T 1l8q_A 175 I 175 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.71 E-value=1.7e-08 Score=94.13 Aligned_cols=141 Identities=15% Similarity=0.120 Sum_probs=93.2
Q ss_pred HHHHHHHHHccC--CCCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHHHHHHHHhhhh-------hcCce
Q psy6129 78 YITLAQALTMSM--GGSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRGLGRIYKGLA-------QSGSW 143 (383)
Q Consensus 78 ~~~l~~al~~~~--~~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~~l~~~l~g~~-------~~g~w 143 (383)
...+..++..+. +.+++||+|||||++++.+++.+ +.+++.++|+.......+.+.+.... ..+.+
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 105 (319)
T 2chq_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKI 105 (319)
T ss_dssp HHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEE
T ss_pred HHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceE
Confidence 334444454443 35678999999999999999987 34578899987655444444443332 23568
Q ss_pred EEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCC
Q psy6129 144 GCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMV 223 (383)
Q Consensus 144 ~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~ 223 (383)
+++||++.++.+....+ ..- + +. ..+++.+++++|.. ..+++.+++++..+.+..
T Consensus 106 liiDe~~~l~~~~~~~L-----------~~~---l---e~----~~~~~~~i~~~~~~----~~l~~~l~sr~~~i~~~~ 160 (319)
T 2chq_A 106 IFLDEADALTADAQAAL-----------RRT---M---EM----YSKSCRFILSCNYV----SRIIEPIQSRCAVFRFKP 160 (319)
T ss_dssp EEEETGGGSCHHHHHTT-----------GGG---T---SS----SSSSEEEEEEESCG----GGSCHHHHTTCEEEECCC
T ss_pred EEEeCCCcCCHHHHHHH-----------HHH---H---Hh----cCCCCeEEEEeCCh----hhcchHHHhhCeEEEecC
Confidence 89999999887653322 110 0 10 12567788888753 478899999999999999
Q ss_pred CCHHHHHHHHH---hhcCCCchH
Q psy6129 224 PDRQIIIRVKL---ASCGFLENI 243 (383)
Q Consensus 224 Pd~~~i~ei~l---~~~gf~~~~ 243 (383)
|+.+.+.+.+. ...|..-..
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~i~~ 183 (319)
T 2chq_A 161 VPKEAMKKRLLEICEKEGVKITE 183 (319)
T ss_dssp CCHHHHHHHHHHHHHTTCCCBCH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCH
Confidence 99887766553 334554333
No 60
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.70 E-value=6.4e-08 Score=90.43 Aligned_cols=139 Identities=8% Similarity=0.038 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHccCCCC--CcCCCCCCccHHHHHHHHHhC----------CcEEEEeCCCCCCHHH-H-----------
Q psy6129 75 DRCYITLAQALTMSMGGS--PCGPAGTGKTETVKDMGKTLA----------KYVVVFNCSDQMDYRG-L----------- 130 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~~~--l~Gp~GtGKT~~i~~la~~lg----------~~~~~~~c~~~~~~~~-l----------- 130 (383)
.+.+..+..++..+.+.. ++||||||||.+++.+++.++ ..++.+||....++.. +
T Consensus 30 ~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~ 109 (318)
T 3te6_A 30 TRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN 109 (318)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC
Confidence 344566777777766654 679999999999999999983 3467899998776543 2
Q ss_pred ----------HHHHhhh--hhc-CceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEe
Q psy6129 131 ----------GRIYKGL--AQS-GSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFIT 197 (383)
Q Consensus 131 ----------~~~l~g~--~~~-g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T 197 (383)
.+++..+ ... ...+++||++.+... ..+- .+.+. ... . +..+.++++
T Consensus 110 ~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q--~~L~----~l~~~-~~~-------~------~s~~~vI~i 169 (318)
T 3te6_A 110 LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSE--KILQ----YFEKW-ISS-------K------NSKLSIICV 169 (318)
T ss_dssp --CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCT--HHHH----HHHHH-HHC-------S------SCCEEEEEE
T ss_pred CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcc--hHHH----HHHhc-ccc-------c------CCcEEEEEE
Confidence 2222222 112 246778999998621 1121 11111 110 1 123456667
Q ss_pred eCCCCCCCCcchHHHHHhc--cccccCCCCHHHHHHHH
Q psy6129 198 MNPGYAGRKELPENLKIQF--RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 198 ~np~~~g~~~lp~~l~~~f--r~v~~~~Pd~~~i~ei~ 233 (383)
.|....-...|+++++++| +.+.+...+.+.+.+|+
T Consensus 170 ~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il 207 (318)
T 3te6_A 170 GGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMI 207 (318)
T ss_dssp CCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred ecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHH
Confidence 7642111134566778898 45888888888887765
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.70 E-value=2.9e-08 Score=105.45 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=87.8
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHH---------------Hhhhh--hcCceEEeccc
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRI---------------YKGLA--QSGSWGCFDEF 149 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~---------------l~g~~--~~g~w~~~dei 149 (383)
+.+++||+|||||++++.+|+.+ +.+++.++|++..+.....++ +.++. ..+.+++|||+
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi 669 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEI 669 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecc
Confidence 34689999999999999999999 789999999987654333222 22222 34678999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC----------------------CCCc
Q psy6129 150 NRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA----------------------GRKE 207 (383)
Q Consensus 150 n~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~----------------------g~~~ 207 (383)
+.++++++..+.+.+ .++ .+....|..+.. .++.+++|+|.+.. -...
T Consensus 670 ~~l~~~~~~~Ll~~l-------~~~--~~~~~~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~ 739 (854)
T 1qvr_A 670 EKAHPDVFNILLQIL-------DDG--RLTDSHGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQH 739 (854)
T ss_dssp GGSCHHHHHHHHHHH-------TTT--EECCSSSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHHh-------ccC--ceECCCCCEecc-CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhh
Confidence 999998877653332 222 222223455554 56779999997310 0223
Q ss_pred chHHHHHhc-cccccCCCCHHHHHHHH
Q psy6129 208 LPENLKIQF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 208 lp~~l~~~f-r~v~~~~Pd~~~i~ei~ 233 (383)
+.+.|.+++ ..+.+..|+.+.+.++.
T Consensus 740 f~~~l~~Rl~~~i~~~pl~~edi~~i~ 766 (854)
T 1qvr_A 740 FRPEFLNRLDEIVVFRPLTKEQIRQIV 766 (854)
T ss_dssp SCHHHHHTCSBCCBCCCCCHHHHHHHH
T ss_pred CCHHHHHhcCeEEeCCCCCHHHHHHHH
Confidence 456666666 34455667766665553
No 62
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.69 E-value=2.2e-07 Score=91.14 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=79.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHHHHHHHH--------hhhhh-cCceEEecccccCCh-
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRGLGRIY--------KGLAQ-SGSWGCFDEFNRIEL- 154 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~~l~~~l--------~g~~~-~g~w~~~dein~l~~- 154 (383)
+.+++||+|+|||++++.+++.+ +.+++.++|.... ..+...+ ..... ....+++||++.+..
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 45689999999999999999988 7888888886531 1221111 11233 678999999998875
Q ss_pred -hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhc---cccccCCCCHHHHH
Q psy6129 155 -PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQF---RTVAMMVPDRQIII 230 (383)
Q Consensus 155 -~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~f---r~v~~~~Pd~~~i~ 230 (383)
..... +..+++.+.+. | ..+++|++.....-..+.+.++++| ..+.+..|+.+...
T Consensus 210 ~~~q~~----l~~~l~~l~~~--------~--------~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~ 269 (440)
T 2z4s_A 210 TGVQTE----LFHTFNELHDS--------G--------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_dssp HHHHHH----HHHHHHHHHTT--------T--------CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHH
T ss_pred hHHHHH----HHHHHHHHHHC--------C--------CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHH
Confidence 23222 22222222221 1 2345555532222235889999999 68899999988877
Q ss_pred HHHH
Q psy6129 231 RVKL 234 (383)
Q Consensus 231 ei~l 234 (383)
+++.
T Consensus 270 ~iL~ 273 (440)
T 2z4s_A 270 SIAR 273 (440)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 63
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.68 E-value=1.1e-08 Score=93.82 Aligned_cols=165 Identities=14% Similarity=0.105 Sum_probs=91.9
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC---H----HHHHHHHhhhh-hcCceEEecccccC------Ch
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD---Y----RGLGRIYKGLA-QSGSWGCFDEFNRI------EL 154 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~---~----~~l~~~l~g~~-~~g~w~~~dein~l------~~ 154 (383)
.+.+++||+|||||++++.+|+.++.+++.++|.+... . ..+..++..+. ..+..+++||++.+ +.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~ 144 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP 144 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh
Confidence 34568999999999999999999999999999976331 1 12344454443 34678899999976 22
Q ss_pred hhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchH-HHHHhc-cccccCCCC-HHHHHH
Q psy6129 155 PVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPE-NLKIQF-RTVAMMVPD-RQIIIR 231 (383)
Q Consensus 155 ~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~-~l~~~f-r~v~~~~Pd-~~~i~e 231 (383)
.....+.+.+. .+.+.. .. . ...+.+++|+|+. ..+++ .++++| ..+.+..++ .+.+.+
T Consensus 145 ~~~~~~l~~L~----~~~~~~---~~-~------~~~~~ii~ttn~~----~~l~~~~l~~rf~~~i~~p~l~~r~~i~~ 206 (272)
T 1d2n_A 145 RFSNLVLQALL----VLLKKA---PP-Q------GRKLLIIGTTSRK----DVLQEMEMLNAFSTTIHVPNIATGEQLLE 206 (272)
T ss_dssp BCCHHHHHHHH----HHTTCC---CS-T------TCEEEEEEEESCH----HHHHHTTCTTTSSEEEECCCEEEHHHHHH
T ss_pred hHHHHHHHHHH----HHhcCc---cC-C------CCCEEEEEecCCh----hhcchhhhhcccceEEcCCCccHHHHHHH
Confidence 22222211111 111111 00 1 1345678888853 13444 456666 344443333 366777
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHhccCCCCCccChhhhHHHHHhcc
Q psy6129 232 VKLASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLG 281 (383)
Q Consensus 232 i~l~~~gf~~~~~la~ki~~~~~~~~~~ls~~~hy~f~lR~l~~vi~~~~ 281 (383)
++....++... ....+.. .+ ...++.-++|.+.+++..+.
T Consensus 207 i~~~~~~~~~~--~~~~l~~---~~-----~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 207 ALELLGNFKDK--ERTTIAQ---QV-----KGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp HHHHHTCSCHH--HHHHHHH---HH-----TTSEEEECHHHHHHHHHHHT
T ss_pred HHHhcCCCCHH--HHHHHHH---Hh-----cCCCccccHHHHHHHHHHHh
Confidence 66655555321 1222211 11 11122225888888887654
No 64
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.66 E-value=2.1e-08 Score=99.57 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=83.9
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhhh-cCceEEecccccCChhhH----
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLAQ-SGSWGCFDEFNRIELPVL---- 157 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~~-~g~w~~~dein~l~~~~l---- 157 (383)
.+.+|+||+|||||++++++|+.++.+++.+||++..+ ...+...+..+.. ..+.+++||++.+...--
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~ 318 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG 318 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCC
T ss_pred CcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccc
Confidence 45678999999999999999999999999999965322 1123444554433 246889999987654210
Q ss_pred HHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hcc-ccccCCCCHHHHHHHH
Q psy6129 158 SVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QFR-TVAMMVPDRQIIIRVK 233 (383)
Q Consensus 158 s~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~fr-~v~~~~Pd~~~i~ei~ 233 (383)
..-......+++.+.... ...++.+++|+|.. ..|++.+++ +|+ .+.+..|+...-.+++
T Consensus 319 ~~~~~~~~~LL~~ld~~~------------~~~~v~vIaaTn~~----~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL 381 (489)
T 3hu3_A 319 EVERRIVSQLLTLMDGLK------------QRAHVIVMAATNRP----NSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (489)
T ss_dssp HHHHHHHHHHHHHHHHSC------------TTSCEEEEEEESCG----GGBCGGGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccc------------cCCceEEEEecCCc----cccCHHHhCCCcCceEEEeCCCCHHHHHHHH
Confidence 000111112233332211 12457889999964 468889988 664 5788999987766655
No 65
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=1.7e-07 Score=93.83 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=82.2
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhh-------------------hhcCceEEeccc
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGL-------------------AQSGSWGCFDEF 149 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~-------------------~~~g~w~~~dei 149 (383)
.+.+++||+|||||++++.+|+.+|.+++.+||+...+...+...+.++ ...+..+++||+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEi 157 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV 157 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECC
Confidence 4566899999999999999999999999999999988766554443321 134568889999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCCCCHHHH
Q psy6129 150 NRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQII 229 (383)
Q Consensus 150 n~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i 229 (383)
+.+..+....+. .+.+.+... +..+++++|..+ ...++ .+++++..+.+..|+.+.+
T Consensus 158 d~l~~~~~~~l~----~L~~~l~~~----------------~~~iIli~~~~~--~~~l~-~l~~r~~~i~f~~~~~~~~ 214 (516)
T 1sxj_A 158 DGMSGGDRGGVG----QLAQFCRKT----------------STPLILICNERN--LPKMR-PFDRVCLDIQFRRPDANSI 214 (516)
T ss_dssp GGCCTTSTTHHH----HHHHHHHHC----------------SSCEEEEESCTT--SSTTG-GGTTTSEEEECCCCCHHHH
T ss_pred CccchhhHHHHH----HHHHHHHhc----------------CCCEEEEEcCCC--Cccch-hhHhceEEEEeCCCCHHHH
Confidence 998765432211 112222111 123555666432 12344 3677778889999998887
Q ss_pred HHHHH
Q psy6129 230 IRVKL 234 (383)
Q Consensus 230 ~ei~l 234 (383)
.+++.
T Consensus 215 ~~~L~ 219 (516)
T 1sxj_A 215 KSRLM 219 (516)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 66
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.65 E-value=6e-08 Score=95.67 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=81.3
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH------HHHHHHHhhhh-hcCceEEecccccCChhhHHH--
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY------RGLGRIYKGLA-QSGSWGCFDEFNRIELPVLSV-- 159 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~------~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls~-- 159 (383)
.+.+|+||+|||||++++.+|..++.+++.++|++..+. ..+..++.-+. ...+.+++||++.+....-+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~ 129 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC
Confidence 456789999999999999999999999999999875431 22334444443 346789999999886542111
Q ss_pred -H----HHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hcc-ccccCCCCHHHHHH
Q psy6129 160 -A----AQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QFR-TVAMMVPDRQIIIR 231 (383)
Q Consensus 160 -l----~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~fr-~v~~~~Pd~~~i~e 231 (383)
. .+.+..++..+..- . -..++.+++|+|.. ..+++.+++ +|. .+.+..||.+.-.+
T Consensus 130 g~~~~~~~~l~~LL~~ld~~-------~-----~~~~viVIaaTn~~----~~Ld~allR~gRFd~~i~i~~Pd~~~R~~ 193 (476)
T 2ce7_A 130 GGHDEREQTLNQLLVEMDGF-------D-----SKEGIIVMAATNRP----DILDPALLRPGRFDKKIVVDPPDMLGRKK 193 (476)
T ss_dssp ---CHHHHHHHHHHHHHHHS-------C-----GGGTEEEEEEESCG----GGSCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhcc-------C-----CCCCEEEEEecCCh----hhhchhhcccCcceeEeecCCCCHHHHHH
Confidence 0 11122223222211 0 02457788899863 357777765 663 77889999754433
No 67
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.65 E-value=1.1e-08 Score=93.33 Aligned_cols=135 Identities=19% Similarity=0.128 Sum_probs=79.9
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH------HHHHHHHhhhhh-cCceEEecccccCChhhHHHH
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY------RGLGRIYKGLAQ-SGSWGCFDEFNRIELPVLSVA 160 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~------~~l~~~l~g~~~-~g~w~~~dein~l~~~~ls~l 160 (383)
..+.+++||+|||||++++.+|+.++.+++.++|+...+. ..+..++..+.. ....+++||++.+....-...
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~ 123 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGG 123 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC------
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccc
Confidence 4567899999999999999999999999999999764321 112333433332 347899999998865421110
Q ss_pred HHHH----HHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHHHH
Q psy6129 161 AQQV----AVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 161 ~~~~----~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ei~ 233 (383)
.... ...+..+.. ..++. -....++.+++|+|.. ..+++.+.+ +| +.+.+..||.+...+++
T Consensus 124 ~~~~~~~~~~~~~~ll~------~l~~~-~~~~~~v~vi~ttn~~----~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il 192 (268)
T 2r62_A 124 VVSGNDEREQTLNQLLA------EMDGF-GSENAPVIVLAATNRP----EILDPALMRPGRFDRQVLVDKPDFNGRVEIL 192 (268)
T ss_dssp ----CCCSCSSTTTTTT------TTTCS-SCSCSCCEEEECBSCC----TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHH
T ss_pred cCCCchhHHHHHHHHHH------HhhCc-ccCCCCEEEEEecCCc----hhcCHhHcCCCCCCeEEEecCcCHHHHHHHH
Confidence 0000 000000000 00110 0012346788899864 357778877 66 56788889976655543
No 68
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.62 E-value=1.5e-07 Score=90.07 Aligned_cols=128 Identities=13% Similarity=-0.013 Sum_probs=81.0
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh---------CCcEEEEeCCCCCCHHHH-HHHH----------------------hhh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL---------AKYVVVFNCSDQMDYRGL-GRIY----------------------KGL 137 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l---------g~~~~~~~c~~~~~~~~l-~~~l----------------------~g~ 137 (383)
+.+++||+|||||++++.+++.+ +.+++.+||....+...+ ..++ ..+
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 125 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRL 125 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999988 778889999987765432 2211 111
Q ss_pred hhcC--ceEEecccccCChh--hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHH
Q psy6129 138 AQSG--SWGCFDEFNRIELP--VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLK 213 (383)
Q Consensus 138 ~~~g--~w~~~dein~l~~~--~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~ 213 (383)
...| .++++||++.+... ....+. .+++... . . +...++.+++++|... ....+.+.++
T Consensus 126 ~~~~~~~vlilDEi~~l~~~~~~~~~l~----~l~~~~~----~-----~---~~~~~~~~I~~t~~~~-~~~~l~~~l~ 188 (387)
T 2v1u_A 126 SRLRGIYIIVLDEIDFLPKRPGGQDLLY----RITRINQ----E-----L---GDRVWVSLVGITNSLG-FVENLEPRVK 188 (387)
T ss_dssp TTSCSEEEEEEETTTHHHHSTTHHHHHH----HHHHGGG----C-----C--------CEEEEECSCST-TSSSSCHHHH
T ss_pred hccCCeEEEEEccHhhhcccCCCChHHH----hHhhchh----h-----c---CCCceEEEEEEECCCc-hHhhhCHHHH
Confidence 2233 37889999976543 222221 1111110 0 0 0024567788887531 2247889999
Q ss_pred Hhc--cccccCCCCHHHHHHHHH
Q psy6129 214 IQF--RTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 214 ~~f--r~v~~~~Pd~~~i~ei~l 234 (383)
++| +.+.+..|+.+.+.+++.
T Consensus 189 ~r~~~~~i~l~~l~~~~~~~il~ 211 (387)
T 2v1u_A 189 SSLGEVELVFPPYTAPQLRDILE 211 (387)
T ss_dssp TTTTSEECCBCCCCHHHHHHHHH
T ss_pred hcCCCeEEeeCCCCHHHHHHHHH
Confidence 999 678999999887777653
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.60 E-value=3.5e-08 Score=102.78 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=81.8
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC------CCCHHHHHHHHhhhh-hcCceEEecccccCChhhH---
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD------QMDYRGLGRIYKGLA-QSGSWGCFDEFNRIELPVL--- 157 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~------~~~~~~l~~~l~g~~-~~g~w~~~dein~l~~~~l--- 157 (383)
..+.+|+||||||||.+++++|..+|.+++.+++++ ..+...+.+++.-+. ...+.++|||++.+-..--
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~ 590 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC-------
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCC
Confidence 456789999999999999999999999999887654 345566778887764 4578999999997743210
Q ss_pred ---H-HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHH
Q psy6129 158 ---S-VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIII 230 (383)
Q Consensus 158 ---s-~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ 230 (383)
+ .....+.+++..+..-. + ..+.-+++|+|.. ..|++++++ || +.+++..||.+.-.
T Consensus 591 ~~~~~~~~rv~~~lL~~mdg~~-------~-----~~~V~vi~aTN~p----~~lD~AllRpgRfd~~i~v~lPd~~~R~ 654 (806)
T 3cf2_A 591 GDGGGAADRVINQILTEMDGMS-------T-----KKNVFIIGATNRP----DIIDPAILRPGRLDQLIYIPLPDEKSRV 654 (806)
T ss_dssp -------CHHHHHHHHHHHSSC-------S-----SSSEEEECC-CCS----SSSCHHHHSTTTSCCEEEC-----CHHH
T ss_pred CCCchHHHHHHHHHHHHHhCCC-------C-----CCCEEEEEeCCCc----hhCCHhHcCCCcceEEEEECCcCHHHHH
Confidence 0 00112223333332211 1 1345677788843 579999998 77 67899999976554
Q ss_pred HH
Q psy6129 231 RV 232 (383)
Q Consensus 231 ei 232 (383)
+|
T Consensus 655 ~i 656 (806)
T 3cf2_A 655 AI 656 (806)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 70
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.58 E-value=8.1e-07 Score=83.86 Aligned_cols=144 Identities=11% Similarity=0.083 Sum_probs=99.1
Q ss_pred chhhHHHHHHHHHHHHccCCC---CCcCCCCCCccHHHHHHHHHhCC------------------------cEEEEeCC-
Q psy6129 71 TPLTDRCYITLAQALTMSMGG---SPCGPAGTGKTETVKDMGKTLAK------------------------YVVVFNCS- 122 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~---~l~Gp~GtGKT~~i~~la~~lg~------------------------~~~~~~c~- 122 (383)
-|..+..+..+..++..+..+ +++||+|+|||++++.+|+.+.. .++.++..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~ 83 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK 83 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc
Confidence 366777788888888876643 57899999999999999998753 14555553
Q ss_pred --CCCCHHHHHHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEE
Q psy6129 123 --DQMDYRGLGRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIF 195 (383)
Q Consensus 123 --~~~~~~~l~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if 195 (383)
.....+.+..++.-+. .....+++||++++..+....+ +..+.+. .+++.++
T Consensus 84 ~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naL-------Lk~lEep--------------~~~~~~I 142 (334)
T 1a5t_A 84 GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANAL-------LKTLEEP--------------PAETWFF 142 (334)
T ss_dssp TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHH-------HHHHTSC--------------CTTEEEE
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHH-------HHHhcCC--------------CCCeEEE
Confidence 3456666666655432 2235678999999987764432 2222110 1345666
Q ss_pred EeeCCCCCCCCcchHHHHHhccccccCCCCHHHHHHHHHhhcCC
Q psy6129 196 ITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGF 239 (383)
Q Consensus 196 ~T~np~~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l~~~gf 239 (383)
+++|. ...+++.++++++.+.+..|+.+.+.+.+-....+
T Consensus 143 l~t~~----~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~ 182 (334)
T 1a5t_A 143 LATRE----PERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTM 182 (334)
T ss_dssp EEESC----GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCC
T ss_pred EEeCC----hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCC
Confidence 66653 35899999999999999999998888766544433
No 71
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.57 E-value=2.8e-07 Score=84.62 Aligned_cols=130 Identities=14% Similarity=0.172 Sum_probs=81.1
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH------HHHHHHHhhh-hhcCceEEecccccCChhhH---
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY------RGLGRIYKGL-AQSGSWGCFDEFNRIELPVL--- 157 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~------~~l~~~l~g~-~~~g~w~~~dein~l~~~~l--- 157 (383)
..|.+|+||+|||||++++.+|..++...+.+++.+-.+. ..++.++..+ ....+++++||++.+...--
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~ 123 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE 123 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc
Confidence 3456789999999999999999999999999998775432 2244555544 33457889999997632100
Q ss_pred -HHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHHHH
Q psy6129 158 -SVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 158 -s~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ei~ 233 (383)
..........+..+.. |+ .....-+++++|.. ..|++.+++ +| +.+.+..||.+.-.+++
T Consensus 124 ~~~~~~~~~~~l~~Lsg---------g~---~~~~~i~ia~tn~p----~~LD~al~r~gRfd~~i~~~~P~~~~r~~il 187 (274)
T 2x8a_A 124 TGASVRVVNQLLTEMDG---------LE---ARQQVFIMAATNRP----DIIDPAILRPGRLDKTLFVGLPPPADRLAIL 187 (274)
T ss_dssp ---CTTHHHHHHHHHHT---------CC---STTCEEEEEEESCG----GGSCHHHHSTTSSCEEEECCSCCHHHHHHHH
T ss_pred chHHHHHHHHHHHhhhc---------cc---ccCCEEEEeecCCh----hhCCHhhcCcccCCeEEEeCCcCHHHHHHHH
Confidence 0000111111222221 11 01234456666642 467899987 77 67899999987766554
No 72
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.55 E-value=8.8e-07 Score=84.40 Aligned_cols=132 Identities=13% Similarity=0.110 Sum_probs=85.3
Q ss_pred HHHHHHHHHccCC---CCCcCCCCCCccHHHHHHHHHhCCc------------------------EEEEeCCCCCCHHHH
Q psy6129 78 YITLAQALTMSMG---GSPCGPAGTGKTETVKDMGKTLAKY------------------------VVVFNCSDQMDYRGL 130 (383)
Q Consensus 78 ~~~l~~al~~~~~---~~l~Gp~GtGKT~~i~~la~~lg~~------------------------~~~~~c~~~~~~~~l 130 (383)
...+..++..+.. .+++||+|||||++++.+|+.++.. ++.++.......+.+
T Consensus 25 ~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (373)
T 1jr3_A 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDT 104 (373)
T ss_dssp HHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCH
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHH
Confidence 3455555655443 4578999999999999999988641 344554443333345
Q ss_pred HHHHhhhh-----hcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCC
Q psy6129 131 GRIYKGLA-----QSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGR 205 (383)
Q Consensus 131 ~~~l~g~~-----~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~ 205 (383)
..++..+. .....+++||++.++.+....+. ..+.+. .+++.+++++|. .
T Consensus 105 ~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll-------~~le~~--------------~~~~~~Il~~~~----~ 159 (373)
T 1jr3_A 105 RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALL-------KTLEEP--------------PEHVKFLLATTD----P 159 (373)
T ss_dssp HHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHH-------HHHHSC--------------CSSEEEEEEESC----G
T ss_pred HHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHH-------HHHhcC--------------CCceEEEEEeCC----h
Confidence 55554432 12457889999999877654432 222110 234556666653 2
Q ss_pred CcchHHHHHhccccccCCCCHHHHHHHHH
Q psy6129 206 KELPENLKIQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 206 ~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l 234 (383)
..+++.+++++..+.+..|+.+.+.+.+-
T Consensus 160 ~~l~~~l~sr~~~i~~~~l~~~~~~~~l~ 188 (373)
T 1jr3_A 160 QKLPVTILSRCLQFHLKALDVEQIRHQLE 188 (373)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HhCcHHHHhheeEeeCCCCCHHHHHHHHH
Confidence 46888999999999999999887766653
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=1.5e-06 Score=82.12 Aligned_cols=151 Identities=15% Similarity=0.086 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHccCC--CCCcCCCCCCccHHHHHHHHHhCC-----cEEEEeCCCCCCHHHHHHHHhhhhh-------cC
Q psy6129 76 RCYITLAQALTMSMG--GSPCGPAGTGKTETVKDMGKTLAK-----YVVVFNCSDQMDYRGLGRIYKGLAQ-------SG 141 (383)
Q Consensus 76 r~~~~l~~al~~~~~--~~l~Gp~GtGKT~~i~~la~~lg~-----~~~~~~c~~~~~~~~l~~~l~g~~~-------~g 141 (383)
.....+..++..+.. .+++||+|||||++++.+|+.+.. .+..+|++.......+.+.+....+ ..
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~ 111 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGF 111 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSC
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCc
Confidence 344556666776654 467899999999999999998632 3667888776666555554443331 24
Q ss_pred ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcccccc
Q psy6129 142 SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAM 221 (383)
Q Consensus 142 ~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~ 221 (383)
..+++||++.+..+....+ +..+.+. .++..+++++|.. ..+++.+++++..+.+
T Consensus 112 ~viiiDe~~~l~~~~~~~L-------~~~le~~--------------~~~~~~il~~n~~----~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 112 KLIILDEADAMTNAAQNAL-------RRVIERY--------------TKNTRFCVLANYA----HKLTPALLSQCTRFRF 166 (340)
T ss_dssp EEEEETTGGGSCHHHHHHH-------HHHHHHT--------------TTTEEEEEEESCG----GGSCHHHHTTSEEEEC
T ss_pred eEEEEeCCCCCCHHHHHHH-------HHHHhcC--------------CCCeEEEEEecCc----cccchhHHhhceeEec
Confidence 5778999999987654433 2222221 1334566777753 5788999999998888
Q ss_pred CCCCHHHHHHHHH---hhcCCCchHHHHHHHHH
Q psy6129 222 MVPDRQIIIRVKL---ASCGFLENITLARKFYT 251 (383)
Q Consensus 222 ~~Pd~~~i~ei~l---~~~gf~~~~~la~ki~~ 251 (383)
..++.+.+.+.+. ...|+.-.....+.+..
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~ 199 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVHEKLKLSPNAEKALIE 199 (340)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8888777666543 23455433434444433
No 74
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.51 E-value=1.1e-06 Score=84.60 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHh--------hh---
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYK--------GL--- 137 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~--------g~--- 137 (383)
|...+.+..+...-....++++.|++||||+.+++.+....+ .|++.+||..-. .+.+..-+- |+
T Consensus 144 ~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~-~~~~~~elfg~~~g~~tga~~~ 222 (387)
T 1ny5_A 144 PKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP-RDIFEAELFGYEKGAFTGAVSS 222 (387)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC-HHHHHHHHHCBCTTSSTTCCSC
T ss_pred HHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC-HHHHHHHhcCCCCCCCCCcccc
Confidence 334444444444444566777899999999999999988875 589999999743 333332221 21
Q ss_pred ------hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCC---CCCcc
Q psy6129 138 ------AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYA---GRKEL 208 (383)
Q Consensus 138 ------~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~---g~~~l 208 (383)
...|+.+++||++.++.++...+. +.+.++ .+.. .|..-....++++++|+|.+-. ....+
T Consensus 223 ~~g~~~~a~~gtlfldei~~l~~~~q~~Ll-------~~l~~~--~~~~-~g~~~~~~~~~rii~at~~~l~~~~~~g~f 292 (387)
T 1ny5_A 223 KEGFFELADGGTLFLDEIGELSLEAQAKLL-------RVIESG--KFYR-LGGRKEIEVNVRILAATNRNIKELVKEGKF 292 (387)
T ss_dssp BCCHHHHTTTSEEEEESGGGCCHHHHHHHH-------HHHHHS--EECC-BTCCSBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred cCCceeeCCCcEEEEcChhhCCHHHHHHHH-------HHHhcC--cEEe-CCCCceeeccEEEEEeCCCCHHHHHHcCCc
Confidence 245789999999999999877663 333343 2222 2322334467899999996311 12344
Q ss_pred hHHHHHhccccccCCCCH
Q psy6129 209 PENLKIQFRTVAMMVPDR 226 (383)
Q Consensus 209 p~~l~~~fr~v~~~~Pd~ 226 (383)
.+.|-.++..+.+..|..
T Consensus 293 r~dl~~rl~~~~i~lPpL 310 (387)
T 1ny5_A 293 REDLYYRLGVIEIEIPPL 310 (387)
T ss_dssp CHHHHHHHTTEEEECCCG
T ss_pred cHHHHHhhcCCeecCCcc
Confidence 555666666777777774
No 75
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.50 E-value=3.3e-06 Score=79.64 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=85.0
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVL 168 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~ 168 (383)
...+++||+|+|||++++.+|..+|.++...++.......++..++.. ...+..+++||++++...+...+ .
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~-~~~~~v~~iDE~~~l~~~~~e~L-------~ 123 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS-LERGDVLFIDEIHRLNKAVEELL-------Y 123 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH-CCTTCEEEEETGGGCCHHHHHHH-------H
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH-ccCCCEEEEcchhhcCHHHHHHH-------H
Confidence 345689999999999999999999998877777666666666554432 23567889999999887443332 2
Q ss_pred HHHHhcCceeEecCC---cEEE-ecCCeeEEEeeCCCCCCCCcchHHHHHhcc-ccccCCCCHHHHHHHHH
Q psy6129 169 AAKKEKKKSFVFTDG---DSIE-MCPEFGIFITMNPGYAGRKELPENLKIQFR-TVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 169 ~~~~~~~~~~~~~~~---~~i~-~~~~~~if~T~np~~~g~~~lp~~l~~~fr-~v~~~~Pd~~~i~ei~l 234 (383)
..+.+....+....+ +.+. ..+.+.++.+.|.. ..|+..++++|. .+.++.|+.+.+.+++.
T Consensus 124 ~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~----~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~ 190 (334)
T 1in4_A 124 SAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS----GLLSSPLRSRFGIILELDFYTVKELKEIIK 190 (334)
T ss_dssp HHHHTSCCCC---------------CCCEEEEEESCG----GGSCHHHHTTCSEEEECCCCCHHHHHHHHH
T ss_pred HHHHhcccceeeccCcccccccccCCCeEEEEecCCc----ccCCHHHHHhcCceeeCCCCCHHHHHHHHH
Confidence 222222111100001 1111 12445666555532 478999999995 46789999888877764
No 76
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.44 E-value=1.1e-07 Score=93.99 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=78.7
Q ss_pred HHHHHHHH--ccCCCCCcCCCCCCccHHHHHHHHHh----------CCcEEEEeCCCCCCH---HHHHHHHhhhhhc-Cc
Q psy6129 79 ITLAQALT--MSMGGSPCGPAGTGKTETVKDMGKTL----------AKYVVVFNCSDQMDY---RGLGRIYKGLAQS-GS 142 (383)
Q Consensus 79 ~~l~~al~--~~~~~~l~Gp~GtGKT~~i~~la~~l----------g~~~~~~~c~~~~~~---~~l~~~l~g~~~~-g~ 142 (383)
..+...+. ...+++|+||||||||++++.+|+.+ |.+++.++|+....- ..+..++..+... +.
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~ 269 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNI 269 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCC
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHHHhcCCe
Confidence 33444553 33456789999999999999999997 888888998721111 1244555544433 46
Q ss_pred eEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCC-CCCCCCcchHHHHHhcccccc
Q psy6129 143 WGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNP-GYAGRKELPENLKIQFRTVAM 221 (383)
Q Consensus 143 w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np-~~~g~~~lp~~l~~~fr~v~~ 221 (383)
.+++| ...+.. +.+.. . .. ..++.+++++|+ .|.+..++++.|+++|..|.+
T Consensus 270 iLfiD----~~~~a~-----------~~L~~---~--L~-------~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v 322 (468)
T 3pxg_A 270 ILFID----AAIDAS-----------NILKP---S--LA-------RGELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (468)
T ss_dssp EEEEC----C-------------------CC---C--TT-------SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred EEEEe----CchhHH-----------HHHHH---h--hc-------CCCEEEEecCCHHHHHHHhhcCHHHHHhCcccee
Confidence 67777 111110 00100 0 01 125678888887 344344789999999999999
Q ss_pred CCCCHHHHHHHHH
Q psy6129 222 MVPDRQIIIRVKL 234 (383)
Q Consensus 222 ~~Pd~~~i~ei~l 234 (383)
..|+.+.+.+++-
T Consensus 323 ~~p~~e~~~~iL~ 335 (468)
T 3pxg_A 323 DQPSVDESIQILQ 335 (468)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9999998887764
No 77
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.43 E-value=2.5e-07 Score=91.80 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=80.3
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCH------HHHHHHHhhhh-hcCceEEecccccCChhhH----
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDY------RGLGRIYKGLA-QSGSWGCFDEFNRIELPVL---- 157 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~------~~l~~~l~g~~-~~g~w~~~dein~l~~~~l---- 157 (383)
.+.+|+||+|||||++++.+|..++.+++.++|++-.+. ..+..++..+. ...+.+++||++.+....-
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~ 144 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 144 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcC
Confidence 346789999999999999999999999999999764321 12334444332 2347889999987643210
Q ss_pred ---HHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHH
Q psy6129 158 ---SVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIR 231 (383)
Q Consensus 158 ---s~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~e 231 (383)
....+.+..++..+.. ++ ......+++++|.. ..|++.+.+ +| |.+.+..||.+.-.+
T Consensus 145 ~~~~e~~~~l~~LL~~Ldg---------~~---~~~~viviAatn~p----~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~ 208 (499)
T 2dhr_A 145 GGNDEREQTLNQLLVEMDG---------FE---KDTAIVVMAATNRP----DILDPALLRPGRFDRQIAIDAPDVKGREQ 208 (499)
T ss_dssp TSSHHHHHHHHHHHHHGGG---------CC---SSCCCEEEECCSCG----GGSCTTTSSTTSSCCEEECCCCCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcc---------cc---cCccEEEEEecCCh----hhcCcccccccccceEEecCCCCHHHHHH
Confidence 0111122222222211 11 12345667777753 247788876 44 578899999886666
Q ss_pred HH
Q psy6129 232 VK 233 (383)
Q Consensus 232 i~ 233 (383)
|+
T Consensus 209 IL 210 (499)
T 2dhr_A 209 IL 210 (499)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 78
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.42 E-value=6.4e-07 Score=85.75 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCc--EEEEeCCCCCCHHHHHHHH-------hhh--------
Q psy6129 75 DRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKY--VVVFNCSDQMDYRGLGRIY-------KGL-------- 137 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~--~~~~~c~~~~~~~~l~~~l-------~g~-------- 137 (383)
.+....+...-....++++.|++||||+.+++.+.+..++. ++.+||..-.....-..++ .|+
T Consensus 139 ~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~ 218 (368)
T 3dzd_A 139 LEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKL 218 (368)
T ss_dssp HHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHH
T ss_pred HHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChH
Confidence 33333333333455667789999999999999999888765 8999999754432222222 121
Q ss_pred -hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCC---CCCCcchHHHH
Q psy6129 138 -AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGY---AGRKELPENLK 213 (383)
Q Consensus 138 -~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~---~g~~~lp~~l~ 213 (383)
...|..+++||++.++.+....+. +.+.++ .+.. .|..-...-++++++++|.+- .....+.+.|.
T Consensus 219 ~~a~~gtlfldei~~l~~~~Q~~Ll-------~~l~~~--~~~~-~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~ 288 (368)
T 3dzd_A 219 ELADQGTLFLDEVGELDQRVQAKLL-------RVLETG--SFTR-LGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLY 288 (368)
T ss_dssp HHTTTSEEEEETGGGSCHHHHHHHH-------HHHHHS--EECC-BTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred hhcCCCeEEecChhhCCHHHHHHHH-------HHHHhC--Cccc-CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 235678999999999999877653 333443 2222 222223346789999998531 01224455666
Q ss_pred HhccccccCCCCH
Q psy6129 214 IQFRTVAMMVPDR 226 (383)
Q Consensus 214 ~~fr~v~~~~Pd~ 226 (383)
.++..+.+..|..
T Consensus 289 ~rl~~~~i~lPpL 301 (368)
T 3dzd_A 289 YRLSVFQIYLPPL 301 (368)
T ss_dssp HHHTSEEEECCCG
T ss_pred HHhCCeEEeCCCh
Confidence 6677777666663
No 79
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.42 E-value=1.6e-07 Score=95.83 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 76 RCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 76 r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
+....+..++..+...++.||+|||||++++.+|..+..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 344566677888888899999999999999999998864
No 80
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.41 E-value=7.5e-08 Score=101.36 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=86.6
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhhh-cCceEEecccccCChhhHH--
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLAQ-SGSWGCFDEFNRIELPVLS-- 158 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~~-~g~w~~~dein~l~~~~ls-- 158 (383)
..+.+|+||||||||++++.+|..++.+++.++|++-.+ ...+..++.-+.. ..+.+++||++.+...--.
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~ 590 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCC
Confidence 455789999999999999999999999999999987432 2345666665533 3468899999976322100
Q ss_pred -HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHHHH
Q psy6129 159 -VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIRVK 233 (383)
Q Consensus 159 -~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ei~ 233 (383)
........+++++...- ++ +.-..++.+++|+|.. ..|++++++ +| +.+.+..||.+...+|+
T Consensus 591 ~~~~~~~~~v~~~LL~~l------d~--~~~~~~v~vI~tTN~~----~~ld~allrpgRf~~~i~~~~p~~~~r~~Il 657 (806)
T 1ypw_A 591 GDGGGAADRVINQILTEM------DG--MSTKKNVFIIGATNRP----DIIDPAILRPGRLDQLIYIPLPDEKSRVAIL 657 (806)
T ss_dssp SHHHHHHHHHHHHHHTTC------C--------CCBCCCCCBSC----GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHT
T ss_pred CCcchhHHHHHHHHHHHH------hc--ccccCCeEEEEecCCc----ccCCHHHhCccccCceeecCCCCHHHHHHHH
Confidence 00011112223332221 11 1123567888899863 468999988 88 47889999987776664
No 81
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.36 E-value=1.5e-06 Score=83.14 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=80.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCCCCCHHHH-HHHHhh----------------------hhh--cC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSDQMDYRGL-GRIYKG----------------------LAQ--SG 141 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~~~~~~~l-~~~l~g----------------------~~~--~g 141 (383)
.+++||+|||||++++.+++.+ +.+++.++|+...+...+ ..++.. +.. ..
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 126 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLY 126 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCe
Confidence 4578999999999999999998 567889999988775443 222210 111 23
Q ss_pred ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhcc--cc
Q psy6129 142 SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFR--TV 219 (383)
Q Consensus 142 ~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr--~v 219 (383)
..+++||++.++.+.+..+...+... .. .+ ..++.+++++|... -...+.+.++++|. .+
T Consensus 127 ~vlilDE~~~l~~~~~~~L~~~~~~~----~~--------~~-----~~~~~iI~~~~~~~-~~~~l~~~~~~r~~~~~i 188 (389)
T 1fnn_A 127 MFLVLDDAFNLAPDILSTFIRLGQEA----DK--------LG-----AFRIALVIVGHNDA-VLNNLDPSTRGIMGKYVI 188 (389)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHTTCH----HH--------HS-----SCCEEEEEEESSTH-HHHTSCHHHHHHHTTCEE
T ss_pred EEEEEECccccchHHHHHHHHHHHhC----CC--------CC-----cCCEEEEEEECCch-HHHHhCHHhhhcCCCceE
Confidence 47889999999766655442222100 00 00 02456777776421 11346778888887 47
Q ss_pred ccCCCCHHHHHHHHH
Q psy6129 220 AMMVPDRQIIIRVKL 234 (383)
Q Consensus 220 ~~~~Pd~~~i~ei~l 234 (383)
.+..++.+.+.+++.
T Consensus 189 ~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 189 RFSPYTKDQIFDILL 203 (389)
T ss_dssp ECCCCBHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHH
Confidence 888888777766653
No 82
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.35 E-value=5.5e-07 Score=81.39 Aligned_cols=129 Identities=17% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC----C--HHHHHHHHhhhh-hcCceEEecccccCChhhHH---
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM----D--YRGLGRIYKGLA-QSGSWGCFDEFNRIELPVLS--- 158 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~----~--~~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls--- 158 (383)
.+.+++||+|||||++++.+|..++.+++.+++.+-. . ...+..++..+. .....+++||++.+....-+
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~ 129 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 129 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccc
Confidence 3467899999999999999999999998888875311 1 122444444443 23467889999755321100
Q ss_pred ----HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHH
Q psy6129 159 ----VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIR 231 (383)
Q Consensus 159 ----~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~e 231 (383)
...+.+..++..+.... . .....+++++|.. ..+++.+++ +| +.+.+..||.+...+
T Consensus 130 ~~~~~~~~~~~~ll~~l~g~~------~------~~~~i~~a~t~~p----~~ld~~l~r~~rf~~~i~i~~p~~~~r~~ 193 (254)
T 1ixz_A 130 GGNDEREQTLNQLLVEMDGFE------K------DTAIVVMAATNRP----DILDPALLRPGRFDRQIAIDAPDVKGREQ 193 (254)
T ss_dssp --CHHHHHHHHHHHHHHHTCC------T------TCCEEEEEEESCG----GGSCGGGGSTTSSCEEEECCSCCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCC------C------CCCEEEEEccCCc----hhCCHHHcCCCcCCeEEeeCCcCHHHHHH
Confidence 11111222233322111 0 1224456666643 457888887 44 568899999876655
Q ss_pred HH
Q psy6129 232 VK 233 (383)
Q Consensus 232 i~ 233 (383)
++
T Consensus 194 il 195 (254)
T 1ixz_A 194 IL 195 (254)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 83
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.31 E-value=1.4e-06 Score=79.92 Aligned_cols=128 Identities=17% Similarity=0.164 Sum_probs=76.6
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC----C--HHHHHHHHhhhh-hcCceEEecccccCChhhHH----
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM----D--YRGLGRIYKGLA-QSGSWGCFDEFNRIELPVLS---- 158 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~----~--~~~l~~~l~g~~-~~g~w~~~dein~l~~~~ls---- 158 (383)
+.+++||+|||||++++.++..++.+++.++|..-. . ...+..++..+. .....+++||++.+....-.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~ 154 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-------
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCC
Confidence 467899999999999999999999998888875311 1 122444454443 23467889999754221100
Q ss_pred ---HHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHHHH
Q psy6129 159 ---VAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIIIRV 232 (383)
Q Consensus 159 ---~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ei 232 (383)
...+.+..++..+.. ++ ......+++++|.. ..+++.+++ +| +.+.+..||.+...++
T Consensus 155 ~~~~~~~~~~~ll~~lsg---------g~---~~~~~i~~a~t~~p----~~ld~~l~r~~rf~~~i~i~~p~~~~r~~i 218 (278)
T 1iy2_A 155 GNDEREQTLNQLLVEMDG---------FE---KDTAIVVMAATNRP----DILDPALLRPGRFDRQIAIDAPDVKGREQI 218 (278)
T ss_dssp -CHHHHHHHHHHHHHHTT---------CC---TTCCEEEEEEESCT----TSSCHHHHSTTSSCCEEECCCCCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhC---------CC---CCCCEEEEEecCCc----hhCCHhHcCCCcCCeEEEeCCcCHHHHHHH
Confidence 011112222222211 11 01234556666643 458899887 45 5788999998766555
Q ss_pred H
Q psy6129 233 K 233 (383)
Q Consensus 233 ~ 233 (383)
+
T Consensus 219 l 219 (278)
T 1iy2_A 219 L 219 (278)
T ss_dssp H
T ss_pred H
Confidence 4
No 84
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.25 E-value=6.2e-06 Score=68.34 Aligned_cols=103 Identities=9% Similarity=0.006 Sum_probs=65.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHH
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQV 164 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~ 164 (383)
+....++||+|+|||++++.++..+ |...+.+++.+.... ........+++||+..+.... .+.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~lLilDE~~~~~~~~----~~~l 103 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------DAAFEAEYLAVDQVEKLGNEE----QALL 103 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------GGGGGCSEEEEESTTCCCSHH----HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------HHHhCCCEEEEeCccccChHH----HHHH
Confidence 4445689999999999999999988 777888887765543 123456788999999877654 2333
Q ss_pred HHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccc
Q psy6129 165 AVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRT 218 (383)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~ 218 (383)
..+++.+.+++ . ..+++|+|.....-... +.+++|+..
T Consensus 104 ~~li~~~~~~g--------~-------~~iiits~~~p~~l~~~-~~L~SRl~~ 141 (149)
T 2kjq_A 104 FSIFNRFRNSG--------K-------GFLLLGSEYTPQQLVIR-EDLRTRMAY 141 (149)
T ss_dssp HHHHHHHHHHT--------C-------CEEEEEESSCTTTSSCC-HHHHHHGGG
T ss_pred HHHHHHHHHcC--------C-------cEEEEECCCCHHHcccc-HHHHHHHhc
Confidence 33344333321 1 12455666322222334 788888853
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.22 E-value=1.2e-06 Score=92.20 Aligned_cols=127 Identities=20% Similarity=0.266 Sum_probs=83.6
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCC------HHHHHHHHhhhh-hcCceEEecccccCChh-----
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMD------YRGLGRIYKGLA-QSGSWGCFDEFNRIELP----- 155 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~------~~~l~~~l~g~~-~~g~w~~~dein~l~~~----- 155 (383)
..+.+|+||+|||||++++.+|..++.+++.++|.+..+ ...+..++..+. ...+.+++||++.+...
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 317 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH 317 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc
Confidence 345678999999999999999999999999999865332 122445555443 44678999999866432
Q ss_pred --hHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH--hc-cccccCCCCHHHHH
Q psy6129 156 --VLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI--QF-RTVAMMVPDRQIII 230 (383)
Q Consensus 156 --~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~--~f-r~v~~~~Pd~~~i~ 230 (383)
....+...+ +..+.... ...++.+++|+|+. ..+++.+++ +| +.+.+..|+.+.-.
T Consensus 318 ~~~~~~~~~~L---l~ll~g~~------------~~~~v~vI~atn~~----~~ld~al~r~gRf~~~i~i~~p~~~~r~ 378 (806)
T 1ypw_A 318 GEVERRIVSQL---LTLMDGLK------------QRAHVIVMAATNRP----NSIDPALRRFGRFDREVDIGIPDATGRL 378 (806)
T ss_dssp SHHHHHHHHHH---HHHHHSSC------------TTSCCEEEEECSCT----TTSCTTTTSTTSSCEEECCCCCCHHHHH
T ss_pred chHHHHHHHHH---HHHhhhhc------------ccccEEEecccCCc----hhcCHHHhcccccccccccCCCCHHHHH
Confidence 222222222 22221111 01456788888864 357777776 66 56788999988776
Q ss_pred HHH
Q psy6129 231 RVK 233 (383)
Q Consensus 231 ei~ 233 (383)
+++
T Consensus 379 ~il 381 (806)
T 1ypw_A 379 EIL 381 (806)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 86
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=5.5e-06 Score=78.40 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=73.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHh-CC----------------------------cEEEEeCCCCC--CHHHHHHHHhhh--
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL-AK----------------------------YVVVFNCSDQM--DYRGLGRIYKGL-- 137 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l-g~----------------------------~~~~~~c~~~~--~~~~l~~~l~g~-- 137 (383)
.+++||+|+|||++++.+|+.+ +. +++.++.+... +...+.+.+..+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 4578999999999999999954 31 12334443321 111233333222
Q ss_pred -------------hhcCceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCC
Q psy6129 138 -------------AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAG 204 (383)
Q Consensus 138 -------------~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g 204 (383)
......+++||++.++.+....+. +.+.+. .++..+++++|..
T Consensus 119 ~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~-------~~le~~--------------~~~~~~Il~t~~~--- 174 (354)
T 1sxj_E 119 MEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALR-------RTMEKY--------------SKNIRLIMVCDSM--- 174 (354)
T ss_dssp TTC------------CCEEEEEECTTSSCHHHHHHHH-------HHHHHS--------------TTTEEEEEEESCS---
T ss_pred hccccccccccccCCCCeEEEEeCccccCHHHHHHHH-------HHHHhh--------------cCCCEEEEEeCCH---
Confidence 224458899999998876644432 222221 1235566666632
Q ss_pred CCcchHHHHHhccccccCCCCHHHHHHHHH
Q psy6129 205 RKELPENLKIQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 205 ~~~lp~~l~~~fr~v~~~~Pd~~~i~ei~l 234 (383)
..+++.+++++..+.+..|+.+.+.+++.
T Consensus 175 -~~l~~~l~sR~~~~~~~~~~~~~~~~~l~ 203 (354)
T 1sxj_E 175 -SPIIAPIKSQCLLIRCPAPSDSEISTILS 203 (354)
T ss_dssp -CSSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred -HHHHHHHHhhceEEecCCcCHHHHHHHHH
Confidence 46888999999999999999888777654
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=8.8e-06 Score=75.71 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=89.2
Q ss_pred HHHHHHHHHHccCC--CCCcCCCCCCccHHHHHHHHHh------CCcEEEEeCCC-CCCHHHHHHHHhhhhhc-----Cc
Q psy6129 77 CYITLAQALTMSMG--GSPCGPAGTGKTETVKDMGKTL------AKYVVVFNCSD-QMDYRGLGRIYKGLAQS-----GS 142 (383)
Q Consensus 77 ~~~~l~~al~~~~~--~~l~Gp~GtGKT~~i~~la~~l------g~~~~~~~c~~-~~~~~~l~~~l~g~~~~-----g~ 142 (383)
....+..++..+.. .+++||+|+|||++++.+|+.+ ...+..++.+. ....+.+..++.-+... ..
T Consensus 5 ~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~k 84 (305)
T 2gno_A 5 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRK 84 (305)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSE
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCce
Confidence 34455666776653 2468999999999999999864 23577888764 67777777777655322 34
Q ss_pred eEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccC
Q psy6129 143 WGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMM 222 (383)
Q Consensus 143 w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~ 222 (383)
.+++||++++..+....+ +..+.+. .+++.|++++|. ...+++.++++ .+.+.
T Consensus 85 vviIdead~lt~~a~naL-------Lk~LEep--------------~~~t~fIl~t~~----~~kl~~tI~SR--~~~f~ 137 (305)
T 2gno_A 85 YVIVHDCERMTQQAANAF-------LKALEEP--------------PEYAVIVLNTRR----WHYLLPTIKSR--VFRVV 137 (305)
T ss_dssp EEEETTGGGBCHHHHHHT-------HHHHHSC--------------CTTEEEEEEESC----GGGSCHHHHTT--SEEEE
T ss_pred EEEeccHHHhCHHHHHHH-------HHHHhCC--------------CCCeEEEEEECC----hHhChHHHHce--eEeCC
Confidence 677899999987764432 2222211 134555555542 35899999999 88888
Q ss_pred CCCHHHHHHHHHh
Q psy6129 223 VPDRQIIIRVKLA 235 (383)
Q Consensus 223 ~Pd~~~i~ei~l~ 235 (383)
.|+.+.+.+.+..
T Consensus 138 ~l~~~~i~~~L~~ 150 (305)
T 2gno_A 138 VNVPKEFRDLVKE 150 (305)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8888777766543
No 88
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.13 E-value=3.7e-06 Score=80.07 Aligned_cols=124 Identities=16% Similarity=0.042 Sum_probs=76.5
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh------CCcEEEEeCCCCCCHHHH-----------------------HHHHhhhhhc
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL------AKYVVVFNCSDQMDYRGL-----------------------GRIYKGLAQS 140 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l------g~~~~~~~c~~~~~~~~l-----------------------~~~l~g~~~~ 140 (383)
..+++||+|||||++++.+++.+ +.+++.++|....+...+ .++..-+...
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 126 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDY 126 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 35578999999999999999988 888999998754443221 1111112222
Q ss_pred --CceEEecccccCC----hhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHH
Q psy6129 141 --GSWGCFDEFNRIE----LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKI 214 (383)
Q Consensus 141 --g~w~~~dein~l~----~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~ 214 (383)
...+++||++.+. .+.+.. +++.+... . ..++.+++++|... ....+.+.+++
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~-------l~~~~~~~-------~------~~~~~~I~~~~~~~-~~~~~~~~~~~ 185 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYK-------LSRINSEV-------N------KSKISFIGITNDVK-FVDLLDPRVKS 185 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHH-------HHHHHHSC-------C------C--EEEEEEESCGG-GGGGCTTHHHH
T ss_pred CCeEEEEEcChhhhhccCcCHHHHH-------Hhhchhhc-------C------CCeEEEEEEECCCC-hHhhhCHHHhc
Confidence 4578899998654 222222 22222111 0 12355667776421 12356778888
Q ss_pred hc--cccccCCCCHHHHHHHHH
Q psy6129 215 QF--RTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 215 ~f--r~v~~~~Pd~~~i~ei~l 234 (383)
+| +.+.+..++.+.+.+++.
T Consensus 186 r~~~~~i~l~~l~~~~~~~il~ 207 (386)
T 2qby_A 186 SLSEEEIIFPPYNAEELEDILT 207 (386)
T ss_dssp TTTTEEEEECCCCHHHHHHHHH
T ss_pred cCCCeeEEeCCCCHHHHHHHHH
Confidence 88 678888999887777654
No 89
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.03 E-value=1.6e-05 Score=68.95 Aligned_cols=115 Identities=14% Similarity=0.044 Sum_probs=62.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAA 170 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~~ 170 (383)
.+++||||||||+++.++|+.++-.+..+..+.. . ...........+++||++. +....+.+.+ +.
T Consensus 61 ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~------f~l~~l~~~kIiiLDEad~---~~~~~~d~~l----rn 126 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-H------FWLEPLTDTKVAMLDDATT---TCWTYFDTYM----RN 126 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-C------GGGGGGTTCSSEEEEEECH---HHHHHHHHHC----HH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-h------hhhcccCCCCEEEEECCCc---hhHHHHHHHH----HH
Confidence 5578999999999999999998655433211111 0 1111222356889999983 2222222223 23
Q ss_pred HHhcCceeE-e--cCCcEEEecCCeeEEEeeCCCCCCCCcchHHHHHhccccccCC
Q psy6129 171 KKEKKKSFV-F--TDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMV 223 (383)
Q Consensus 171 ~~~~~~~~~-~--~~~~~i~~~~~~~if~T~np~~~g~~~lp~~l~~~fr~v~~~~ 223 (383)
..++..... . .....+ ....+++|+|-.-..... -..|.+|...+.+..
T Consensus 127 ~ldG~~~~iD~Khr~~~~~---~~~PlIITtN~~~~~~~~-~~~L~SRi~~f~F~~ 178 (212)
T 1tue_A 127 ALDGNPISIDRKHKPLIQL---KCPPILLTTNIHPAKDNR-WPYLESRITVFEFPN 178 (212)
T ss_dssp HHHTCCEEEC----CCEEE---CCCCEEEEESSCTTSSSS-CHHHHTSCEEEECCS
T ss_pred HhCCCcccHHHhhcCcccc---CCCCEEEecCCCcccccc-hhhhhhhEEEEEcCC
Confidence 333331111 0 111122 234689999964333222 267888888776653
No 90
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.85 E-value=0.00011 Score=71.43 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=32.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCC
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM 125 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~ 125 (383)
.+.+++||||||||++++.+|+.+|.+++.++|+..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~ 87 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhc
Confidence 4566899999999999999999999999999986543
No 91
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.81 E-value=1.6e-05 Score=78.30 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=50.3
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC--CcEEEEeCCCCCCH-----HHHHHHHhhh----hhcCceEEecccccCChh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA--KYVVVFNCSDQMDY-----RGLGRIYKGL----AQSGSWGCFDEFNRIELP 155 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg--~~~~~~~c~~~~~~-----~~l~~~l~g~----~~~g~w~~~dein~l~~~ 155 (383)
+.+++||||||||++++++|+.+| .+++.++|+...+. ..+.+.+..+ ...++.+++||++.+...
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~ 141 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPC 141 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccc
Confidence 567899999999999999999999 88999999875531 1244555443 345678899999977543
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.73 E-value=2.3e-05 Score=67.89 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHcc------CCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCH-------HHHHHHHhhh
Q psy6129 74 TDRCYITLAQALTMS------MGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDY-------RGLGRIYKGL 137 (383)
Q Consensus 74 t~r~~~~l~~al~~~------~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~-------~~l~~~l~g~ 137 (383)
...++..+...+... .+.+++||+|||||++++.+++.+ |.+++.++|++.... ..+...+. .
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 112 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLD-Y 112 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHH-H
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHH-H
Confidence 344555555555544 556789999999999999999988 667777887531110 00011111 1
Q ss_pred hhcCceEEecccccCC
Q psy6129 138 AQSGSWGCFDEFNRIE 153 (383)
Q Consensus 138 ~~~g~w~~~dein~l~ 153 (383)
......+++||++..+
T Consensus 113 ~~~~~~lilDei~~~~ 128 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHSSEEEEEEECCC-
T ss_pred hcCCCEEEEcCCCCCc
Confidence 2334588999996543
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.71 E-value=0.00011 Score=62.36 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=48.1
Q ss_pred chhhHHHHHHHHHHHH-----ccCCCCCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCCCCCHHHHHHHH-------
Q psy6129 71 TPLTDRCYITLAQALT-----MSMGGSPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSDQMDYRGLGRIY------- 134 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~-----~~~~~~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~~~~~~~l~~~l------- 134 (383)
++...+.+..+...+. .+.+.+++||+|||||++++.++..+ |..++.+++.+..+ .+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~ 93 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF--RLKHLMDEGKDTK 93 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH--HHHHHHHHTCCSH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--HHHHHhcCchHHH
Confidence 4445555555544443 23456789999999999999999877 66665555432211 111111
Q ss_pred -hhhhhcCceEEeccccc
Q psy6129 135 -KGLAQSGSWGCFDEFNR 151 (383)
Q Consensus 135 -~g~~~~g~w~~~dein~ 151 (383)
.........+++||+..
T Consensus 94 ~~~~~~~~~llilDE~~~ 111 (180)
T 3ec2_A 94 FLKTVLNSPVLVLDDLGS 111 (180)
T ss_dssp HHHHHHTCSEEEEETCSS
T ss_pred HHHHhcCCCEEEEeCCCC
Confidence 11234567899999984
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.06 E-value=0.00029 Score=65.44 Aligned_cols=76 Identities=11% Similarity=0.109 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHc-----cCCCCCcCCCCCCccHHHHHHHHHhC----CcEEEEeCCCCC-------CHHHHHHHHhhhhh
Q psy6129 76 RCYITLAQALTM-----SMGGSPCGPAGTGKTETVKDMGKTLA----KYVVVFNCSDQM-------DYRGLGRIYKGLAQ 139 (383)
Q Consensus 76 r~~~~l~~al~~-----~~~~~l~Gp~GtGKT~~i~~la~~lg----~~~~~~~c~~~~-------~~~~l~~~l~g~~~ 139 (383)
..+..+...+.. ..+.++.||+|||||.++.++|+.+. .++..+++++-+ ....+.+.+ +...
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~ 213 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEI-DAVK 213 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTT-HHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHH-HHhc
Confidence 344444445554 35667899999999999999998654 667777764210 000111111 1223
Q ss_pred cCceEEecccccC
Q psy6129 140 SGSWGCFDEFNRI 152 (383)
Q Consensus 140 ~g~w~~~dein~l 152 (383)
....+++||+...
T Consensus 214 ~~~lLiiDdig~~ 226 (308)
T 2qgz_A 214 NVPVLILDDIGAE 226 (308)
T ss_dssp TSSEEEEETCCC-
T ss_pred CCCEEEEcCCCCC
Confidence 4468899999644
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.96 E-value=0.00097 Score=62.24 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=33.2
Q ss_pred HHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 78 YITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 78 ~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
...+..++..+...+++||+|+|||++++.+++..+ ++.++|..
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~ 64 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE 64 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence 344555565555566889999999999999999886 66677754
No 96
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.91 E-value=0.00068 Score=65.02 Aligned_cols=39 Identities=21% Similarity=0.068 Sum_probs=30.9
Q ss_pred CCC--cCCCCCCccHHHHHHHHHh---------CCcEEEEeCCCCCCHHH
Q psy6129 91 GSP--CGPAGTGKTETVKDMGKTL---------AKYVVVFNCSDQMDYRG 129 (383)
Q Consensus 91 ~~l--~Gp~GtGKT~~i~~la~~l---------g~~~~~~~c~~~~~~~~ 129 (383)
.++ +||+|+|||++++.+++.+ +..++.++|....+...
T Consensus 53 ~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (412)
T 1w5s_A 53 MIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYT 102 (412)
T ss_dssp EEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHH
T ss_pred EEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHH
Confidence 457 8999999999999999876 45678889976555543
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.73 E-value=0.0021 Score=60.07 Aligned_cols=34 Identities=18% Similarity=0.029 Sum_probs=29.1
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
..++.||+|+|||++++.+++.++...+.++|..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 4557899999999999999999887777888764
No 98
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.72 E-value=0.0023 Score=57.74 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=61.7
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCChhhHHHHHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLA 169 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~~~ls~l~~~~~~i~~ 169 (383)
+.+++||||||||.+++++|+.++.. -.+|.+.... .+.+ +.....++.||...... .... ++
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~~~f------~l~~-~~~k~i~l~Ee~~~~~d-~~~~--------lr 168 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTNENF------PFND-CVDKMVIWWEEGKMTAK-VVES--------AK 168 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTCSSC------TTGG-GSSCSEEEECSCCEETT-THHH--------HH
T ss_pred EEEEECCCCCCHHHHHHHHHhhhccc-ceeecccccc------cccc-ccccEEEEeccccchhH-HHHH--------HH
Confidence 35688999999999999999987663 2235543211 1222 22334556677765543 2222 22
Q ss_pred HHHhcCceeE-ec--CCcEEEecCCeeEEEeeCCCCC----C---CCcchHHHHHhccccccC
Q psy6129 170 AKKEKKKSFV-FT--DGDSIEMCPEFGIFITMNPGYA----G---RKELPENLKIQFRTVAMM 222 (383)
Q Consensus 170 ~~~~~~~~~~-~~--~~~~i~~~~~~~if~T~np~~~----g---~~~lp~~l~~~fr~v~~~ 222 (383)
.+.++..... .. ....+ +...+++|+|.+-. | ..+.-+.|++|...+.+.
T Consensus 169 ~i~~G~~~~id~K~k~~~~v---~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~ 228 (267)
T 1u0j_A 169 AILGGSKVRVDQKCKSSAQI---DPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELT 228 (267)
T ss_dssp HHHTTCCEEC------CCEE---CCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECC
T ss_pred HHhCCCcEEEecCcCCcccc---cCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECC
Confidence 2334322111 00 01122 44668999996311 1 135557799998887775
No 99
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.51 E-value=0.002 Score=54.99 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=39.0
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH------------------HHHHHHhhhhhcCceEEecccc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR------------------GLGRIYKGLAQSGSWGCFDEFN 150 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~------------------~l~~~l~g~~~~g~w~~~dein 150 (383)
+++||+|+|||+++..++..+ |+.++.+....+..+. ....++.-+......+++||++
T Consensus 7 vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE~Q 86 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEVQ 86 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECCGG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEECcc
Confidence 468999999999986666543 6776666444222110 0011111111134578999999
Q ss_pred cCChhhHHH
Q psy6129 151 RIELPVLSV 159 (383)
Q Consensus 151 ~l~~~~ls~ 159 (383)
.++++.+..
T Consensus 87 ~~~~~~~~~ 95 (184)
T 2orw_A 87 FFNPSLFEV 95 (184)
T ss_dssp GSCTTHHHH
T ss_pred cCCHHHHHH
Confidence 997765543
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.47 E-value=0.0041 Score=60.93 Aligned_cols=43 Identities=26% Similarity=0.280 Sum_probs=33.7
Q ss_pred echhhHHHHHHHHHHHHccC-CCCCcCCCCCCccHHHHHHHHHh
Q psy6129 70 ITPLTDRCYITLAQALTMSM-GGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 70 ~Tp~t~r~~~~l~~al~~~~-~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.||.-.+++..+..++..+. ..++.||||||||+++..+++.+
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46666777777777777666 45578999999999999988776
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.45 E-value=0.0064 Score=56.42 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=40.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeC--CCC-----CCHHH-HHHHHhhhhhcCceEEecccccCCh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNC--SDQ-----MDYRG-LGRIYKGLAQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c--~~~-----~~~~~-l~~~l~g~~~~g~w~~~dein~l~~ 154 (383)
.++.||||+|||+++.++|...|.++..+.. .+. .+.+. +.++..-+...+ .+++|++..+..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~ 196 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVIG 196 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC-
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccccccc
Confidence 3678999999999999999877655333333 221 23333 233333344455 889999998754
No 102
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.38 E-value=0.0012 Score=55.14 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
+....+.||+|+|||++++.||..+|.++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~ 32 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF 32 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 34456899999999999999999999754
No 103
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.37 E-value=0.0015 Score=54.90 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=26.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEe
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFN 120 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~ 120 (383)
.++.|++|+|||++++.||+.++.+++.+.
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 457899999999999999999998876554
No 104
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.35 E-value=0.0011 Score=57.14 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=26.3
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.....+++||+|+|||++++.||+.+|.+++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 3445668999999999999999999998764
No 105
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.18 E-value=0.0018 Score=54.82 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+++||+|+|||++++.||+.+|.+++
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3568899999999999999999998865
No 106
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.09 E-value=0.0018 Score=55.87 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.3
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
-..+.||+|+|||++++.++..+|..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g~~~ 57 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETGLEF 57 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeE
Confidence 345789999999999999999998654
No 107
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.07 E-value=0.0042 Score=53.72 Aligned_cols=62 Identities=21% Similarity=0.104 Sum_probs=40.1
Q ss_pred CCCcCCCCCCccHHHHHHHHH--------hC-CcEEEEeCCCCCC---------------------HHHHHHHHhhhhhc
Q psy6129 91 GSPCGPAGTGKTETVKDMGKT--------LA-KYVVVFNCSDQMD---------------------YRGLGRIYKGLAQS 140 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~--------lg-~~~~~~~c~~~~~---------------------~~~l~~~l~g~~~~ 140 (383)
.+++|++|||||..+..++.. .| ++++..||..-.- ...+.+++.-....
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENI 87 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGGT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccccC
Confidence 357899999999998775433 46 8888888764210 01122221112334
Q ss_pred CceEEecccccC
Q psy6129 141 GSWGCFDEFNRI 152 (383)
Q Consensus 141 g~w~~~dein~l 152 (383)
|..+++||...+
T Consensus 88 ~~vliIDEAq~l 99 (199)
T 2r2a_A 88 GSIVIVDEAQDV 99 (199)
T ss_dssp TCEEEETTGGGT
T ss_pred ceEEEEEChhhh
Confidence 899999999987
No 108
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.98 E-value=0.0029 Score=52.62 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=23.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.||+|+|||++++.||+.+|.+++
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 357899999999999999999997753
No 109
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.92 E-value=0.0033 Score=52.78 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.7
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
...+.||+|+|||++++.||+.+|.+++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 3567899999999999999999998754
No 110
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.87 E-value=0.0029 Score=53.49 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|+|||++++.||+.+|.+++
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGLL 31 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 457899999999999999999998754
No 111
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.82 E-value=0.0024 Score=54.03 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.7
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
...+.|++|+|||++++.||+.+|.++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~ 32 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKK 32 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 356889999999999999999999664
No 112
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.80 E-value=0.004 Score=51.82 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|||||+.++.||+.+|.+++
T Consensus 10 i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 457899999999999999999998865
No 113
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.78 E-value=0.0032 Score=53.59 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=24.9
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
....+.|++|+|||+.++.||+.+|.+++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 34567899999999999999999997754
No 114
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.77 E-value=0.0036 Score=52.19 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=24.6
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
...+.|++|+|||++++.||+.+|.+++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3567899999999999999999998754
No 115
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.72 E-value=0.0037 Score=52.63 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
...++.|++|+|||++++.||+.+|.+++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 34567899999999999999999998764
No 116
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.65 E-value=0.004 Score=53.12 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=26.0
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
....-..+.|++|+|||+.++.||+.+|.+++
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 34445668999999999999999999996543
No 117
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.61 E-value=0.0029 Score=55.61 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=24.9
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
...++.|++|+|||+.++.||+.+|.+++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 34568899999999999999999997654
No 118
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.54 E-value=0.0046 Score=51.99 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=20.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.|++|+|||+.++.||+.+|.+++
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457899999999999999999998865
No 119
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.54 E-value=0.0046 Score=55.53 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
++.||+|||||++++.||+.+|.+++
T Consensus 5 ~I~G~~GSGKSTla~~La~~~~~~~i 30 (253)
T 2ze6_A 5 LIYGPTCSGKTDMAIQIAQETGWPVV 30 (253)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEECCCCcCHHHHHHHHHhcCCCeEE
Confidence 57899999999999999999997754
No 120
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.53 E-value=0.0046 Score=52.45 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=24.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
.++.|++|+|||++++.|++.+|.+++.
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4578999999999999999999977543
No 121
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.47 E-value=0.0046 Score=53.09 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..++|++|+|||+.++.||+.+|.+++
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~~~~i 49 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLGIPQI 49 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 346899999999999999999998754
No 122
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.47 E-value=0.0053 Score=52.78 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=23.6
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
-.++.|++|+|||++++.|++.+|.++
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg~~~ 46 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACGYPF 46 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCEE
Confidence 355789999999999999999998664
No 123
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.43 E-value=0.0063 Score=50.88 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
..++||+|+|||++++.++..+|..+
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~~~ 36 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHAAF 36 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCcEE
Confidence 45789999999999999999998664
No 124
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.37 E-value=0.0071 Score=54.21 Aligned_cols=31 Identities=26% Similarity=0.197 Sum_probs=27.1
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
+....++|++|+|||++++.||+.+|.+++-
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 5667789999999999999999999987543
No 125
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.36 E-value=0.0072 Score=50.05 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=23.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
..+.||+|+|||++++.| +.+|.+++.
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 357899999999999999 999988654
No 126
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.34 E-value=0.0075 Score=49.96 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=23.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|+|||+.++.|++.+|.+++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 357899999999999999999997754
No 127
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.31 E-value=0.012 Score=60.16 Aligned_cols=38 Identities=32% Similarity=0.258 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHH
Q psy6129 73 LTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 73 ~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
+.+.-..++..|+...-..++.||||||||.|+-++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~ 227 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL 227 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH
Confidence 34444456666776554567889999999998865444
No 128
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.27 E-value=0.0076 Score=51.04 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=23.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|+|||++++.|++.+|.+++
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 457899999999999999999997653
No 129
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.23 E-value=0.0063 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=21.6
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
...+.||+|+|||++++.||+.+|
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998
No 130
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.22 E-value=0.0043 Score=54.24 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=23.0
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
..++.||+|+|||+.++.||+.+|.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 45678999999999999999999964
No 131
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.20 E-value=0.0078 Score=52.21 Aligned_cols=27 Identities=15% Similarity=0.114 Sum_probs=23.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.||+|+|||+.++.||+.+|.+++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 357899999999999999999997754
No 132
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.19 E-value=0.0065 Score=52.98 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.|++|+|||+.++.||+.+|.+++
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~~i 33 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAAHL 33 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 457899999999999999999997643
No 133
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.17 E-value=0.022 Score=49.16 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=35.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIY 134 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l 134 (383)
..+.||+|+|||++++.+|..-|..++.++.....+...+.+..
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~ 66 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMA 66 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHH
Confidence 34789999999999999998668888888888777776665543
No 134
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.17 E-value=0.014 Score=55.46 Aligned_cols=62 Identities=16% Similarity=0.050 Sum_probs=40.0
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEecccccCCh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIEL 154 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~l~~ 154 (383)
+....+.||+|+|||++++.++..++-.++.++.... . . +...|.......+++||+.....
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~-~---~-~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD-R---L-NFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT-T---H-HHHHGGGTTCSCEEETTCCCSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch-h---H-HHHHHHhcchhHHHHHHHHHHHH
Confidence 3345689999999999999999988766544333221 1 1 11233334445568899886543
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.16 E-value=0.0088 Score=54.74 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNC 121 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c 121 (383)
++.||+|+|||++++.|++.++..++.+++
T Consensus 37 vl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 37 LLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 468999999999999999998655566665
No 136
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.15 E-value=0.015 Score=58.66 Aligned_cols=70 Identities=19% Similarity=0.065 Sum_probs=42.3
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHH-----------HHhhh----------hhcCce
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGR-----------IYKGL----------AQSGSW 143 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~-----------~l~g~----------~~~g~w 143 (383)
....++.||||||||+++..+++.+ |.++..... ...-...+.. .+... .....+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap-T~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dv 282 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP-TGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDL 282 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES-SHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC-cHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCE
Confidence 3445678999999999999888755 556554432 2211222322 21100 012357
Q ss_pred EEecccccCChhhHH
Q psy6129 144 GCFDEFNRIELPVLS 158 (383)
Q Consensus 144 ~~~dein~l~~~~ls 158 (383)
+++||+.+++.+.+.
T Consensus 283 lIIDEasml~~~~~~ 297 (574)
T 3e1s_A 283 LIVDEVSMMGDALML 297 (574)
T ss_dssp EEECCGGGCCHHHHH
T ss_pred EEEcCccCCCHHHHH
Confidence 899999999887544
No 137
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.15 E-value=0.0089 Score=51.07 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|+|||++++.||+.+|.+++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 357899999999999999999997643
No 138
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.08 E-value=0.0096 Score=51.65 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=23.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.||+|+|||+.++.||+.+|.+++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHI 29 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 357899999999999999999987754
No 139
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.06 E-value=0.0093 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
..+.||+|+|||++++.|++.+|.++
T Consensus 8 i~i~G~~GsGKSTl~~~L~~~~g~~~ 33 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAEALQWHL 33 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45899999999999999999999764
No 140
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.06 E-value=0.0078 Score=51.00 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=23.5
Q ss_pred CCCcCCCCCCccHHHHHHHHH-hCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKT-LAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~-lg~~~~ 117 (383)
..++|++|+|||++++.||+. +|.+++
T Consensus 13 I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 568999999999999999999 786654
No 141
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.03 E-value=0.0085 Score=50.65 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=23.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|+|||+.++.|++.+|.+++
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457899999999999999999996643
No 142
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.98 E-value=0.013 Score=49.10 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=26.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEe
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFN 120 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~ 120 (383)
..++|++|+|||++++.|+..+ |.+++.++
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 4578999999999999999998 98877664
No 143
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.95 E-value=0.006 Score=51.01 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=20.7
Q ss_pred CCCcCCCCCCccHHHHHHHH-HhCCc
Q psy6129 91 GSPCGPAGTGKTETVKDMGK-TLAKY 115 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~-~lg~~ 115 (383)
.++.|++|+|||++++.|++ .+|..
T Consensus 5 I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred EEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 45789999999999999999 45533
No 144
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.92 E-value=0.008 Score=52.40 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=24.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
.++.|++|+|||+.++.||+.+|.+++.
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 4578999999999999999999977543
No 145
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.90 E-value=0.0071 Score=51.26 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=25.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEe
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFN 120 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~ 120 (383)
...+.||+|+|||++++.+|..++...+.++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 3457899999999999999988776655554
No 146
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.87 E-value=0.013 Score=56.57 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=41.0
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhhhhhcCceEEeccccc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNR 151 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dein~ 151 (383)
+++|++|+|||++++.|++.+|..+ ++-+.--.+..+.+.+......|..+++|..+.
T Consensus 262 il~G~pGSGKSTla~~L~~~~~~~~--i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~~~~ 319 (416)
T 3zvl_A 262 VAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNP 319 (416)
T ss_dssp EEESCTTSSHHHHHHHHTGGGTCEE--CCGGGSCSHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred EEECCCCCCHHHHHHHHHHhcCcEE--EccchHHHHHHHHHHHHHHHhcCCcEEEeCCCC
Confidence 3689999999999999999887553 444333334445455555667788888888774
No 147
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.87 E-value=0.014 Score=49.99 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=24.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEe
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFN 120 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~ 120 (383)
..+.||+|+|||++++.||..+ |...+.++
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4478999999999999999998 65544444
No 148
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.86 E-value=0.011 Score=52.87 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.||+|+|||++++.||+.+|.+++
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 458899999999999999999998754
No 149
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.86 E-value=0.0096 Score=52.51 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=24.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..++.|++|+|||+.++.||+.+|.+++
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i 45 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHL 45 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3567899999999999999999997654
No 150
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.84 E-value=0.0093 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.||+|+|||++++.||. +|.+++
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 35789999999999999998 887753
No 151
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.84 E-value=0.051 Score=47.70 Aligned_cols=69 Identities=20% Similarity=0.120 Sum_probs=41.0
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC-HHHH-H---------------HHH---hhhhhc--CceEEe
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD-YRGL-G---------------RIY---KGLAQS--GSWGCF 146 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~-~~~l-~---------------~~l---~g~~~~--g~w~~~ 146 (383)
+++||+|+|||+++..++..+ |..++.++...... ...+ . .++ ...... -..+++
T Consensus 16 litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViI 95 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGI 95 (223)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEEE
Confidence 457999999999987776554 67777775444221 0000 0 111 111111 347889
Q ss_pred cccccCChhhHHHH
Q psy6129 147 DEFNRIELPVLSVA 160 (383)
Q Consensus 147 dein~l~~~~ls~l 160 (383)
||++-++.+.+..+
T Consensus 96 DEaQ~l~~~~ve~l 109 (223)
T 2b8t_A 96 DEVQFFDDRICEVA 109 (223)
T ss_dssp CSGGGSCTHHHHHH
T ss_pred ecCccCcHHHHHHH
Confidence 99998887655433
No 152
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.83 E-value=0.01 Score=51.58 Aligned_cols=28 Identities=11% Similarity=-0.041 Sum_probs=24.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
.++.|++|+|||+.++.||+.+|.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3578999999999999999999876543
No 153
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.79 E-value=0.012 Score=51.59 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.|++|+|||+.++.||+.+|.+++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 357899999999999999999997543
No 154
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.79 E-value=0.012 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.3
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
++.||||+||++.++.||+.+|.+.+
T Consensus 4 il~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 46799999999999999999998754
No 155
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.78 E-value=0.022 Score=48.30 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=25.3
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNC 121 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c 121 (383)
.+.|++|+|||+.++.|++.+ |.+++...-
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 578999999999999999999 998876544
No 156
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.78 E-value=0.012 Score=50.51 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=23.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|+|||+.++.|++.+|.+++
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~~~i 44 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSFVHL 44 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 457899999999999999999997644
No 157
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.76 E-value=0.0086 Score=53.62 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=25.2
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNC 121 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c 121 (383)
++.||+|+|||++++.|++.++..++.++.
T Consensus 36 ~l~G~~GsGKSTla~~L~~~l~~~~~~~~~ 65 (253)
T 2p5t_B 36 LLGGQSGAGKTTIHRIKQKEFQGNIVIIDG 65 (253)
T ss_dssp EEESCGGGTTHHHHHHHHHHTTTCCEEECG
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCcEEEec
Confidence 468999999999999999999866555554
No 158
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.73 E-value=0.013 Score=50.22 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|+|||++++.||+.+|.+++
T Consensus 5 i~i~G~~GsGKst~~~~la~~lg~~~~ 31 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAALGVPYL 31 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 347899999999999999999997654
No 159
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.56 E-value=0.0085 Score=51.43 Aligned_cols=28 Identities=25% Similarity=0.257 Sum_probs=24.2
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.-..++|++|||||+.++.|++.+|.++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~v 40 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHV 40 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 3455899999999999999999999774
No 160
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.54 E-value=0.013 Score=54.80 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=26.9
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQ 124 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~ 124 (383)
-..+.||+|+|||++++.||+.+| ..++++++-
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds~ 41 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN--GEIISGDSM 41 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence 356789999999999999999998 455666653
No 161
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.54 E-value=0.019 Score=48.54 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=25.1
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEe
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFN 120 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~ 120 (383)
.+.|++|+|||+.++.|++.+ |.+++...
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 4 AFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 578999999999999999998 88876554
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.54 E-value=0.014 Score=52.48 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=25.2
Q ss_pred CCCcCCCCCCccHHHHHHHHH---hCCcEEEEe
Q psy6129 91 GSPCGPAGTGKTETVKDMGKT---LAKYVVVFN 120 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~---lg~~~~~~~ 120 (383)
.+++|++|+|||++++.|++. .|.+++.++
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 457899999999999999998 787766554
No 163
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.51 E-value=0.015 Score=51.72 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=24.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.||+|+|||+.++.|++.+|.+.+
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 457899999999999999999987754
No 164
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.50 E-value=0.031 Score=49.40 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=34.8
Q ss_pred eeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeC
Q psy6129 68 LVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNC 121 (383)
Q Consensus 68 lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c 121 (383)
+-.+|.-.+++..+ + .+..++++||+|+|||.++..++..++.+++++.-
T Consensus 92 ~~l~~~Q~~ai~~~---~-~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 92 ISLRDYQEKALERW---L-VDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp CCCCHHHHHHHHHH---T-TTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCcCHHHHHHHHHH---H-hCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 44556555554432 2 33447889999999999999888888877666643
No 165
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.43 E-value=0.014 Score=50.08 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|+|||++++.||+ +|.+++
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~~i 29 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAYVL 29 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCEEE
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCEEE
Confidence 45789999999999999999 886654
No 166
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.41 E-value=0.014 Score=54.15 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=25.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEEEE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVVVF 119 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~ 119 (383)
..++.||+|+|||++++.||+.+|..++..
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 356789999999999999999999665444
No 167
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.40 E-value=0.017 Score=51.09 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.7
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
-..+.||+|+|||++++.+|+.+|.++
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 345789999999999999999999765
No 168
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.39 E-value=0.036 Score=47.95 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh--CCcEEEEeC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL--AKYVVVFNC 121 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l--g~~~~~~~c 121 (383)
.+.+.|+.|+|||+.++.|++.| |.+++...-
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e 37 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE 37 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC
Confidence 45678999999999999999988 556555443
No 169
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.37 E-value=0.017 Score=51.28 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.5
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
...++||+|+|||++++.+|+.+|...
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 355789999999999999999998753
No 170
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.32 E-value=0.0079 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
..+.|++|+|||++++.|++.++.
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999998873
No 171
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.27 E-value=0.018 Score=48.61 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.3
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.+.||+|+|||++++.++..++..+.
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 57899999999999999999875443
No 172
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.26 E-value=0.04 Score=48.33 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=32.8
Q ss_pred CCCcCCCCCCccHHHHHHHHH--h-------CCcEEEEeCCCCCCHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKT--L-------AKYVVVFNCSDQMDYRGLGRIY 134 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~--l-------g~~~~~~~c~~~~~~~~l~~~l 134 (383)
..+.||+|+|||++++.+|.. + +..++.++.....+...+.+..
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 79 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 79 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHH
Confidence 357899999999999999984 3 4567777777766666555443
No 173
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.26 E-value=0.018 Score=50.41 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=23.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.++.||||+||++.++.||+.+|.+.+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 346799999999999999999998743
No 174
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.25 E-value=0.016 Score=49.50 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHh-CCcEEEEeC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL-AKYVVVFNC 121 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l-g~~~~~~~c 121 (383)
..++|++|+|||+.++.|++.+ |.+++.+..
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 4578999999999999999999 577766654
No 175
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.21 E-value=0.043 Score=48.27 Aligned_cols=32 Identities=28% Similarity=0.228 Sum_probs=22.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHh-------CCcEEEEeCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL-------AKYVVVFNCS 122 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l-------g~~~~~~~c~ 122 (383)
..+.||+|+|||+.++.|++.+ |..+......
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep 66 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP 66 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence 4567999999999999999988 6666555433
No 176
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.20 E-value=0.013 Score=50.43 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
..+.|++|+|||++++.|++.++..
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4578999999999999999998864
No 177
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.19 E-value=0.33 Score=45.08 Aligned_cols=130 Identities=8% Similarity=-0.011 Sum_probs=77.4
Q ss_pred CCcCCCCCCccHHHHHHHHHh---C-CcEEEEeCCCCCCHHHHHHHHhh--hhhcCceEEeccccc-CChhhHHHHHHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---A-KYVVVFNCSDQMDYRGLGRIYKG--LAQSGSWGCFDEFNR-IELPVLSVAAQQV 164 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g-~~~~~~~c~~~~~~~~l~~~l~g--~~~~g~w~~~dein~-l~~~~ls~l~~~~ 164 (383)
+++||.|.||+++++.+++.+ | .++..+..+...+...+..-+.. .......+++||.+. ++.+....+..
T Consensus 22 l~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~-- 99 (343)
T 1jr3_D 22 LLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLT-- 99 (343)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHH--
T ss_pred EEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHH--
Confidence 368999999999999998865 3 24344444444555444433322 223456788999998 87765444321
Q ss_pred HHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeC-CC-CCCCCcchHHHHHhccccccCCCCHHHHHH---HHHhhcCC
Q psy6129 165 AVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMN-PG-YAGRKELPENLKIQFRTVAMMVPDRQIIIR---VKLASCGF 239 (383)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~n-p~-~~g~~~lp~~l~~~fr~v~~~~Pd~~~i~e---i~l~~~gf 239 (383)
.+ +. .++++.++++++ ++ -..++.+++.++++...+.+..|+...+.+ -.+...|.
T Consensus 100 -----~l-e~-------------p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~ 160 (343)
T 1jr3_D 100 -----LT-GL-------------LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL 160 (343)
T ss_dssp -----HH-TT-------------CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTC
T ss_pred -----HH-hc-------------CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 11 11 123455555543 22 123578999999999888887777555443 23445665
Q ss_pred Cch
Q psy6129 240 LEN 242 (383)
Q Consensus 240 ~~~ 242 (383)
.-.
T Consensus 161 ~i~ 163 (343)
T 1jr3_D 161 ELD 163 (343)
T ss_dssp EEC
T ss_pred CCC
Confidence 433
No 178
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.17 E-value=0.013 Score=50.25 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=21.6
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
+....++||+|+|||++++.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 44567899999999999999998764
No 179
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.17 E-value=0.019 Score=48.92 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=24.8
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhCC-cEEEEeC
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLAK-YVVVFNC 121 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg~-~~~~~~c 121 (383)
.+..++||+|+|||++++.|.+.... ..+.+.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~ 35 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSS 35 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEE
Confidence 46678999999999999999887653 3344433
No 180
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.10 E-value=0.011 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=21.4
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
...++||+|+|||++++.|++.++.
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCcc
Confidence 3457899999999999999998853
No 181
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.02 E-value=0.011 Score=55.58 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHccCC--CCCcCCCCCCccHHHHHHHHHhCCcEEE
Q psy6129 74 TDRCYITLAQALTMSMG--GSPCGPAGTGKTETVKDMGKTLAKYVVV 118 (383)
Q Consensus 74 t~r~~~~l~~al~~~~~--~~l~Gp~GtGKT~~i~~la~~lg~~~~~ 118 (383)
.++.+..+...+..+.. .++.||+|+|||++++.+|+.++.+++.
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 44444444444444433 5689999999999999999999977644
No 182
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.00 E-value=0.013 Score=49.47 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=20.8
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
...++||+|+|||++++.|+..+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 345789999999999999999864
No 183
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.96 E-value=0.022 Score=49.18 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=24.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
+.+.||.|||||++.+.||+.||.+++
T Consensus 9 I~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 457899999999999999999999965
No 184
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.93 E-value=0.056 Score=46.89 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=30.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC---------cEEEEeCCCCCCHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK---------YVVVFNCSDQMDYRGLGRIY 134 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~---------~~~~~~c~~~~~~~~l~~~l 134 (383)
..+.||+|+|||++++.++..+-. ..+.++.........+..++
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~ 80 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA 80 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999985432 25566665555555555444
No 185
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.90 E-value=0.029 Score=51.68 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=25.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
.++.||+|+|||+++..+|+.++.. ++++++
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~--iis~Ds 43 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVE--LISVDS 43 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEE--EEECCT
T ss_pred EEEECCCccCHHHHHHHHHHhCCCc--EEeccc
Confidence 3568999999999999999998754 466654
No 186
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.90 E-value=0.024 Score=49.20 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|+|||++++.|+. +|.+++
T Consensus 7 I~i~G~~GSGKST~~~~L~~-lg~~~i 32 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD-LGINVI 32 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 45789999999999999999 887654
No 187
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.86 E-value=0.013 Score=50.14 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=20.8
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
-..+.||+|+|||++++.++..+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 345789999999999999999864
No 188
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.70 E-value=0.015 Score=54.29 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=26.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQ 124 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~ 124 (383)
.++.||+|+|||+++..||+.+|.. ++++++-
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~~e--iIs~Ds~ 74 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFPLE--VINSDKM 74 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSCEE--EEECCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCc--EEccccc
Confidence 4578999999999999999999855 4666553
No 189
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.69 E-value=0.21 Score=56.94 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=55.1
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHH---------------------HHHHHhhhh--hc
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRG---------------------LGRIYKGLA--QS 140 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~---------------------l~~~l~g~~--~~ 140 (383)
.+...+++||||||||+++.+++... |..+..+.+...+++.. ..+.+.-.+ ..
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~ 1505 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1505 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCC
Confidence 34445689999999999999887654 56788888887654443 222223232 23
Q ss_pred CceEEecccccCCh-hh-------------HHHHHHHHHHHHHHHHhcC
Q psy6129 141 GSWGCFDEFNRIEL-PV-------------LSVAAQQVAVVLAAKKEKK 175 (383)
Q Consensus 141 g~w~~~dein~l~~-~~-------------ls~l~~~~~~i~~~~~~~~ 175 (383)
-..+++|+++-+-+ .- -..+++.+..+.....+++
T Consensus 1506 ~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~ 1554 (2050)
T 3cmu_A 1506 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1554 (2050)
T ss_dssp CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC
Confidence 46889999974432 11 1234566666655555443
No 190
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.67 E-value=0.026 Score=52.10 Aligned_cols=31 Identities=29% Similarity=0.347 Sum_probs=24.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
.++.||+|+|||+++..||+.++. .++++++
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~--~iis~Ds 36 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNG--EVISGDS 36 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTE--EEEECCG
T ss_pred EEEECCCcCCHHHHHHHHHHhCcc--ceeecCc
Confidence 356899999999999999999874 3456544
No 191
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.62 E-value=0.031 Score=47.26 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=20.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
..+.||+|+|||++++.++..++-
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEECCCCCcHHHHHHHHhcccCC
Confidence 357899999999999999986643
No 192
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.62 E-value=0.028 Score=50.07 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=26.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCc--------EEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKY--------VVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~--------~~~~~c~~ 123 (383)
+.+.|++|+|||++++.|++.+|.+ +.+++++.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence 4478999999999999999999976 34566554
No 193
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.59 E-value=0.02 Score=56.74 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=32.9
Q ss_pred HHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCC--cEEEEe
Q psy6129 77 CYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAK--YVVVFN 120 (383)
Q Consensus 77 ~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~--~~~~~~ 120 (383)
....+..++..+...+++||+|+|||++++.++..+.. -.+.+.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 34455566777777789999999999999999988743 244543
No 194
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.50 E-value=0.021 Score=49.85 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=22.5
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+..+....++||+|+|||++++.++..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4455556689999999999999999977
No 195
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.48 E-value=0.086 Score=53.44 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=20.2
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+...++.||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4456688999999999998877655
No 196
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.46 E-value=0.018 Score=49.72 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=23.4
Q ss_pred HHHccCCCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 84 ALTMSMGGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 84 al~~~~~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
.+..+....+.||+|+|||++++.++..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 455555567899999999999999999874
No 197
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.45 E-value=0.025 Score=48.21 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|+|||++++.||+. |.+++
T Consensus 11 I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 457899999999999999998 86654
No 198
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.39 E-value=0.034 Score=48.13 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
...+.|++|+|||++++.||+.+|.+++
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~ 32 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYV 32 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 3457899999999999999999997753
No 199
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.38 E-value=0.022 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
..++||+|+|||++++.|+..++.
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEECcCCCCHHHHHHHHHhhCCC
Confidence 457899999999999999998753
No 200
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.35 E-value=0.031 Score=48.24 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.6
Q ss_pred CCcCCCCCCccHHHHHHHHHhC---CcEEEEeC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA---KYVVVFNC 121 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c 121 (383)
.+.||+|+|||++++.++..+. ...-.+..
T Consensus 26 ~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~ 58 (208)
T 3c8u_A 26 ALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp EEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEECCCCCCHHHHHHHHHHHHhhcCCceEEEec
Confidence 4789999999999999999885 33444544
No 201
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.33 E-value=0.45 Score=44.53 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=41.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHH---------------------HHHHhhhhhc--CceE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGL---------------------GRIYKGLAQS--GSWG 144 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l---------------------~~~l~g~~~~--g~w~ 144 (383)
..+.||+|+|||+++.+++... |..+..+......+.... ..++..++.. -..+
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lI 143 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDII 143 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEE
Confidence 3478999999999999888654 567777777665543311 1122223323 4688
Q ss_pred EecccccCC
Q psy6129 145 CFDEFNRIE 153 (383)
Q Consensus 145 ~~dein~l~ 153 (383)
++|++..+.
T Consensus 144 VIDsl~~l~ 152 (349)
T 2zr9_A 144 VIDSVAALV 152 (349)
T ss_dssp EEECGGGCC
T ss_pred EEcChHhhc
Confidence 999998775
No 202
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.33 E-value=0.27 Score=47.55 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=28.4
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQM 125 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~ 125 (383)
+++|++|+|||+++..||..+ |+.+..+.|+..-
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred EEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 468999999999999999877 7778888887653
No 203
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.31 E-value=0.076 Score=49.28 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=34.9
Q ss_pred CCcCCCCCCccHHHHHHHHHh---------CCcEEEEeCCCCCCHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---------AKYVVVFNCSDQMDYRGLGRIYK 135 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---------g~~~~~~~c~~~~~~~~l~~~l~ 135 (383)
.+.||+|+|||+++.++|... |..++.++....+++..+.++..
T Consensus 111 ~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~ 163 (324)
T 2z43_A 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAK 163 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred EEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999875 56777888877777777666543
No 204
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.26 E-value=0.02 Score=49.25 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.6
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
+.+.++.||+|+|||+++..|++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 34567899999999999999999876
No 205
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.26 E-value=0.023 Score=48.07 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
..+.||+|+|||++++.++..+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 35789999999999999998874
No 206
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.25 E-value=0.037 Score=48.78 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|+|||++++.||+.+|.+++
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 357899999999999999999997753
No 207
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.19 E-value=0.018 Score=51.18 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.8
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
-..+.||.|+|||++++.++..+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 35588999999999999999998854
No 208
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.06 E-value=0.14 Score=43.60 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=39.8
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH--HH-HHH---------------HhhhhhcCceEEecccc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR--GL-GRI---------------YKGLAQSGSWGCFDEFN 150 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~--~l-~~~---------------l~g~~~~g~w~~~dein 150 (383)
.++||.|+|||+.+-.+++.+ |+.+.++...-++.+. .+ .++ +.-+...-..+++||++
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvViIDEaq 91 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAIDEVQ 91 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEEECSGG
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEEEECCC
Confidence 368999999998887777655 7888888654433221 11 111 10011112578899999
Q ss_pred cCChhhHH
Q psy6129 151 RIELPVLS 158 (383)
Q Consensus 151 ~l~~~~ls 158 (383)
.++++.+.
T Consensus 92 fl~~~~v~ 99 (191)
T 1xx6_A 92 FFDDEIVE 99 (191)
T ss_dssp GSCTHHHH
T ss_pred CCCHHHHH
Confidence 98777654
No 209
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.02 E-value=0.056 Score=45.51 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=23.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC---CcEEEEe
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA---KYVVVFN 120 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~ 120 (383)
..++|++|+|||++++.+|..++ .++..++
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 44789999999999999999884 3454443
No 210
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.067 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=17.7
Q ss_pred HHHHHHh--ccccEEEECCCCCCC
Q psy6129 362 QLYETQR--VRHGIMTLGPTGAVT 383 (383)
Q Consensus 362 ~l~~~l~--~~~gviLvG~~GsGK 383 (383)
.+|+.+. .++||+|+|||||||
T Consensus 172 e~f~~~gi~~prGvLL~GPPGTGK 195 (405)
T 4b4t_J 172 ELFESLGIAQPKGVILYGPPGTGK 195 (405)
T ss_dssp HHHHHHTCCCCCCEEEESCSSSSH
T ss_pred HHHHhCCCCCCCceEEeCCCCCCH
Confidence 5566654 468999999999998
No 211
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.94 E-value=0.16 Score=43.54 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=27.7
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDY 127 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~ 127 (383)
.+.|+.|+|||+.++.|++.| |.+++.......+..
T Consensus 4 ~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~ 42 (197)
T 3hjn_A 4 TFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTET 42 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcH
Confidence 467999999999999999877 777766655444433
No 212
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.87 E-value=0.029 Score=48.33 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=23.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEe
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFN 120 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~ 120 (383)
..+.||+|+|||++++.++..++..+..+.
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 457899999999999999999873233333
No 213
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.83 E-value=0.075 Score=44.45 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=26.1
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQ 124 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~ 124 (383)
.+.|++|+|||+++..+++.+ |..+..+.+..+
T Consensus 8 ~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 8 QVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 468999999999999998876 566777776543
No 214
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.82 E-value=0.018 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
...++||+|+|||++++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999876
No 215
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.78 E-value=0.067 Score=45.23 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=34.1
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHhh-hhhcCceEEecc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKG-LAQSGSWGCFDE 148 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~g-~~~~g~w~~~de 148 (383)
++.|++|+|||+.+..+|.. |.+.+.+.-....|.+...|+-.- ......|..+++
T Consensus 3 lV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~ 59 (180)
T 1c9k_A 3 LVTGGARSGKSRHAEALIGD-APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAEC 59 (180)
T ss_dssp EEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC------CHHHHHHHTSCTTEEEECC
T ss_pred EEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEc
Confidence 46799999999999999988 888766655555565555554321 122345776654
No 216
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.72 E-value=0.027 Score=48.41 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=21.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
..+.|++|+|||+.++.|++.+|.+
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999988654
No 217
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.67 E-value=0.029 Score=48.29 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
..++||+|+|||++++.|++...
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 45789999999999999998875
No 218
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.64 E-value=0.054 Score=47.71 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=23.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.||||+|||+.++.||+.+|.+.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 457899999999999999999997753
No 219
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.62 E-value=0.12 Score=48.24 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=34.5
Q ss_pred CCcCCCCCCccHHHHHHHHHh---------CCcEEEEeCCCCCCHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---------AKYVVVFNCSDQMDYRGLGRIYK 135 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---------g~~~~~~~c~~~~~~~~l~~~l~ 135 (383)
.+.||+|+|||+++.++|... |..++.+.....+++..+.++..
T Consensus 126 ~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~ 178 (343)
T 1v5w_A 126 EAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD 178 (343)
T ss_dssp EEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999862 56778888877777777665543
No 220
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.54 E-value=0.03 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.2
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
....++||+|+|||++++.++....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3345789999999999999998875
No 221
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.40 E-value=0.06 Score=46.11 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNC 121 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c 121 (383)
..+.||+|+|||++++.++..+ |.++...+.
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 3478999999999999999876 556655543
No 222
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.39 E-value=0.029 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=20.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l 112 (383)
..+.||.|+|||++++.++..+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998
No 223
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.34 E-value=0.032 Score=47.97 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=21.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
..++|++|+|||++++.|++.++.
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999998753
No 224
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.27 E-value=0.047 Score=49.90 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQM 125 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~ 125 (383)
..+.||+|+|||++++.|++.+| ..+.+++.+.-.
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 34789999999999999999887 345667766544
No 225
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.25 E-value=0.055 Score=47.44 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=24.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
..+.|++|||||++++.||+.+|.+++
T Consensus 17 I~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 346799999999999999999998864
No 226
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.23 E-value=0.065 Score=49.39 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=26.5
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSD 123 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~ 123 (383)
+++||+|+|||+++..+|..+ |..+..+.|+.
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 478999999999999999876 56677777764
No 227
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.19 E-value=0.089 Score=45.52 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=24.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCS 122 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~ 122 (383)
..+.||+|+|||++++.++..+ |..+..++..
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 4578999999999999998654 4556555553
No 228
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.17 E-value=0.059 Score=46.70 Aligned_cols=30 Identities=27% Similarity=0.235 Sum_probs=24.0
Q ss_pred HHHHHccCCCCCcCCCCCCccHHHHHHHHH
Q psy6129 82 AQALTMSMGGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 82 ~~al~~~~~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
+..+..+.-..+.||.|+|||++++.++..
T Consensus 16 l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 16 VDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 334566666678999999999999998876
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.07 E-value=0.073 Score=51.48 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=27.3
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQ 124 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~ 124 (383)
+++||+|+|||+++..||..+ |..+..+.|+..
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 468999999999999999776 777878887743
No 230
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.98 E-value=0.064 Score=46.24 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=25.1
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhC----CcEEEEe
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLA----KYVVVFN 120 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg----~~~~~~~ 120 (383)
....+.|++|+|||++++.|++.++ .+++.++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3355789999999999999999775 5566554
No 231
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.94 E-value=0.042 Score=50.63 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=23.3
Q ss_pred HHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 85 LTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 85 l~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+..+....++||+|+|||++++.++..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3444555689999999999999999987
No 232
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.93 E-value=0.048 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.9
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
-.+++||+|+|||++++.++..+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 34578999999999999999865
No 233
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.92 E-value=0.15 Score=47.90 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=30.8
Q ss_pred CCcCCCCCCccHHHHHHHHHhC---------CcEEEEeCCCCCCHHHHHHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA---------KYVVVFNCSDQMDYRGLGRIY 134 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg---------~~~~~~~c~~~~~~~~l~~~l 134 (383)
.++||+|+|||++++.++.... -.++.++..+......++.+.
T Consensus 135 ~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~ 186 (349)
T 1pzn_A 135 EVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA 186 (349)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHH
Confidence 4789999999999999998872 244666665554555555544
No 234
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.85 E-value=0.051 Score=51.37 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=28.3
Q ss_pred HHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 79 ITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 79 ~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
..+..++..+...+++||+|+|||++++.++....
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34555667777778899999999999999988764
No 235
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.83 E-value=0.046 Score=45.76 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.4
Q ss_pred CCcCCCCCCccHHHHHHHHHhC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg 113 (383)
+++||.|+|||+++++++..++
T Consensus 30 ~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 30 AIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEECTTSSHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHc
Confidence 5789999999999999999886
No 236
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.79 E-value=0.23 Score=43.07 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=32.5
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHhhhhhcC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKGLAQSG 141 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c~~~~~~~~l~~~l~g~~~~g 141 (383)
...+.|++|+|||+.++.|++.++ .+++...-...+ .++..+......|
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~---~~g~~i~~~l~~~ 59 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGT---PLAERIRELLLAP 59 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSS---HHHHHHHHHHHSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCC---HHHHHHHHHHhcC
Confidence 345789999999999999999884 555544433222 3555555555444
No 237
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.78 E-value=0.036 Score=47.58 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHh-CCcEEEEeCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL-AKYVVVFNCS 122 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l-g~~~~~~~c~ 122 (383)
..+.|++|+|||++++.|++.+ +.. .++.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~--~i~~D 54 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCS--VISQD 54 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEE--EEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcE--EEeCC
Confidence 3478999999999999999987 433 44444
No 238
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.72 E-value=0.076 Score=50.72 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=25.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~ 123 (383)
.++.||+|+|||+++..||+.++.. ++++++
T Consensus 5 i~i~GptgsGKttla~~La~~~~~~--iis~Ds 35 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFNGE--VINSDS 35 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTEE--EEECCT
T ss_pred EEEECcchhhHHHHHHHHHHHCCCe--EeecCc
Confidence 3578999999999999999999854 466654
No 239
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.65 E-value=0.065 Score=48.68 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
+.+.|++|+|||++++.|+ .+|.++
T Consensus 78 I~I~G~~GSGKSTva~~La-~lg~~~ 102 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NLGAYI 102 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHTCEE
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCcE
Confidence 4578999999999999999 578664
No 240
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.56 E-value=0.11 Score=46.08 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=28.6
Q ss_pred CcCCCCCCccHHHHHHHHHh--CCcEEEEeCCCCC
Q psy6129 93 PCGPAGTGKTETVKDMGKTL--AKYVVVFNCSDQM 125 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~l--g~~~~~~~c~~~~ 125 (383)
+.|.+|+|||+++..+|..+ |+.+.+++++.+.
T Consensus 19 ~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~ 53 (262)
T 1yrb_A 19 FVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGV 53 (262)
T ss_dssp EECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSC
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 57999999999999999877 7788899888764
No 241
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.52 E-value=0.058 Score=49.20 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=20.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHh-CCc
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL-AKY 115 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l-g~~ 115 (383)
.++.|++|+|||++++.|++.+ |.+
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~~~~~ 30 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKNPGFY 30 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcE
Confidence 4578999999999999999974 543
No 242
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.51 E-value=0.1 Score=47.77 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSDQ 124 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~~ 124 (383)
..++||+|+|||+++..+|..+ |+.+..+.++..
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 3478999999999999998755 667888888764
No 243
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.36 E-value=0.062 Score=45.81 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l 112 (383)
..++||+|+|||++++.++..+
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhc
Confidence 3578999999999999999876
No 244
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.32 E-value=0.1 Score=49.01 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=28.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDY 127 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~ 127 (383)
..++|++|+|||+++..|+..+ |..+.++.++...+.
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~ 121 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR 121 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc
Confidence 3478999999999999999887 888888988866553
No 245
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.31 E-value=0.054 Score=50.53 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=32.2
Q ss_pred HHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCc--EEEEeC
Q psy6129 78 YITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKY--VVVFNC 121 (383)
Q Consensus 78 ~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~--~~~~~c 121 (383)
...+...+..+...+++||+|+|||++++.++...... .+.++-
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 34455566677777899999999999999999877432 445543
No 246
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.28 E-value=1.3 Score=41.71 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=28.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDY 127 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~ 127 (383)
..+.||+|+|||+++.++|... |.++..++.....+.
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDP 116 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhH
Confidence 3468999999999999888654 678888887765544
No 247
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.14 E-value=0.12 Score=47.71 Aligned_cols=48 Identities=25% Similarity=0.323 Sum_probs=35.1
Q ss_pred ceeechh-hHHHHHHHHHHHHc----------------cCCCCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 67 RLVITPL-TDRCYITLAQALTM----------------SMGGSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 67 ~lv~Tp~-t~r~~~~l~~al~~----------------~~~~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
++..|+. |.+....+...+.. +.+.++.|++|+|||+++.++.+. |..
T Consensus 106 PVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~-g~~ 170 (314)
T 1ko7_A 106 PLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR-GHR 170 (314)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT-TCE
T ss_pred eEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc-CCc
Confidence 3555655 55666666666665 667889999999999999998774 543
No 248
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.03 E-value=0.057 Score=47.27 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=13.4
Q ss_pred CCCcCCCCCCccHHHHHHH-HHhC
Q psy6129 91 GSPCGPAGTGKTETVKDMG-KTLA 113 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la-~~lg 113 (383)
..++||+|+|||++++.|+ ..+.
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EEEECSCC----CHHHHHHC----
T ss_pred EEEECCCCCCHHHHHHHHHhcCCC
Confidence 4578999999999999999 7763
No 249
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.87 E-value=0.094 Score=53.30 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 74 TDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 74 t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
++.-...+..++. ....++.||||||||+++..++..+
T Consensus 182 n~~Q~~av~~~l~-~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CHHHHHHHHHHHT-CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc-CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3333444444443 3345678999999999998776654
No 250
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.67 E-value=0.18 Score=46.09 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=29.3
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD 126 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~ 126 (383)
.++|++|+|||+++..+|..+ |..+..+.++..-.
T Consensus 102 ~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp EEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 367999999999999999877 77888888886544
No 251
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.49 E-value=0.065 Score=51.82 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=17.2
Q ss_pred HHHHHHh--ccccEEEECCCCCCC
Q psy6129 362 QLYETQR--VRHGIMTLGPTGAVT 383 (383)
Q Consensus 362 ~l~~~l~--~~~gviLvG~~GsGK 383 (383)
.+|+-+. .++||+|+|||||||
T Consensus 205 e~f~~~g~~~prGvLLyGPPGTGK 228 (434)
T 4b4t_M 205 DKFKDMGIRAPKGALMYGPPGTGK 228 (434)
T ss_dssp HHHHHHCCCCCCEEEEESCTTSSH
T ss_pred HHHHhCCCCCCCeeEEECcCCCCH
Confidence 4555554 468999999999998
No 252
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.48 E-value=0.14 Score=44.80 Aligned_cols=33 Identities=18% Similarity=0.042 Sum_probs=24.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSD 123 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~ 123 (383)
.++.||+|+|||+++..+|... |..++.++...
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 3578999999999998877643 56676666543
No 253
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.48 E-value=0.08 Score=46.52 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=23.9
Q ss_pred ccCCCCCcCCCCCCccHHHHHHH--HH--hCCcEEEEeC
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMG--KT--LAKYVVVFNC 121 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la--~~--lg~~~~~~~c 121 (383)
.+.-..+.||+|+|||++++.++ .. -+.....+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 33445688999999999999988 32 2444444443
No 254
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.45 E-value=0.12 Score=49.90 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=27.4
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQ 124 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~ 124 (383)
+++|++|+|||+++..||..+ |..+..+.|+..
T Consensus 103 ~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 103 LLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp EEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 368999999999999999876 567888888753
No 255
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.43 E-value=0.094 Score=48.22 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.1
Q ss_pred CCcCCCCCCccHHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l 112 (383)
.++||+|+|||++++.+|..+
T Consensus 104 ~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 104 MIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999876
No 256
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.38 E-value=0.1 Score=43.47 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.2
Q ss_pred CCCcCCCCCCccHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKD 107 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~ 107 (383)
..++||+|+|||++++.
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45789999999999996
No 257
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.38 E-value=0.082 Score=49.82 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+++||+|+|||++++.++..+
T Consensus 126 i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 4578999999999999998776
No 258
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.32 E-value=0.094 Score=48.28 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCS 122 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~ 122 (383)
..++||+|+|||++++.+|..+ +..+....++
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 139 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 3478999999999999999877 3344444443
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.30 E-value=0.23 Score=45.84 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=33.1
Q ss_pred CCcCCCCCCccHHHHHHHHHh---------------C----CcEEEEeCCCCCCHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---------------A----KYVVVFNCSDQMDYRGLGRIYK 135 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---------------g----~~~~~~~c~~~~~~~~l~~~l~ 135 (383)
.+.||+|+|||+++.++|... | ..++.+.....++++.+.+...
T Consensus 102 ~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 102 EFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999998753 3 4667777777667776665543
No 260
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.28 E-value=0.16 Score=49.22 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=29.7
Q ss_pred CCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSDQMD 126 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~~~~ 126 (383)
+++|++|+|||+++-.||..+ |+.+..+.|+....
T Consensus 104 ~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 104 LMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 367999999999999999776 78899999987543
No 261
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.28 E-value=0.26 Score=46.37 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=28.6
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR 128 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~ 128 (383)
.+.||+|+|||+++.+++..+ |..++.++.....+..
T Consensus 65 ~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 65 EIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV 104 (356)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH
Confidence 367999999999999988764 6677777776665544
No 262
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.15 E-value=0.1 Score=48.33 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=24.9
Q ss_pred CCcCCCCCCccHHHHHHHHHhCC-----cEEEEeCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAK-----YVVVFNCSD 123 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~-----~~~~~~c~~ 123 (383)
.+.||+|+|||++++.++..++. .+..+..+.
T Consensus 96 gI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 96 GIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 46899999999999999999863 355555443
No 263
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.04 E-value=0.11 Score=48.11 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.7
Q ss_pred CCcCCCCCCccHHHHHHHHHhC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg 113 (383)
.+.||+|+|||++++.++..+.
T Consensus 94 gI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 94 GVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCchHHHHHHHHHhhcc
Confidence 4789999999999999999873
No 264
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.03 E-value=0.1 Score=50.52 Aligned_cols=65 Identities=14% Similarity=0.020 Sum_probs=39.9
Q ss_pred CcCCCCCCccHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHh----------------hh-hh-------cCceEEecc
Q psy6129 93 PCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYK----------------GL-AQ-------SGSWGCFDE 148 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~~~~~~~~l~~~l~----------------g~-~~-------~g~w~~~de 148 (383)
+.|+||||||++++.++.. ....++..+... .+++.+-+. .. .. ....+++||
T Consensus 166 I~G~aGsGKTt~I~~~~~~--~~~lVlTpT~~a-a~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE 242 (446)
T 3vkw_A 166 VDGVPGCGKTKEILSRVNF--EEDLILVPGRQA-AEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDE 242 (446)
T ss_dssp EEECTTSCHHHHHHHHCCT--TTCEEEESCHHH-HHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEET
T ss_pred EEcCCCCCHHHHHHHHhcc--CCeEEEeCCHHH-HHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCEEEEeC
Confidence 5799999999999887753 343444333221 122322221 11 11 156899999
Q ss_pred cccCChhhHHHH
Q psy6129 149 FNRIELPVLSVA 160 (383)
Q Consensus 149 in~l~~~~ls~l 160 (383)
.-+++...+..+
T Consensus 243 ~sm~~~~~l~~l 254 (446)
T 3vkw_A 243 GLMLHTGCVNFL 254 (446)
T ss_dssp GGGSCHHHHHHH
T ss_pred cccCCHHHHHHH
Confidence 999998886654
No 265
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.02 E-value=0.075 Score=51.42 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=17.5
Q ss_pred HHHHHHh--ccccEEEECCCCCCC
Q psy6129 362 QLYETQR--VRHGIMTLGPTGAVT 383 (383)
Q Consensus 362 ~l~~~l~--~~~gviLvG~~GsGK 383 (383)
.+|+-+. .++||+|+|||||||
T Consensus 205 ~~f~~~g~~~prGvLL~GPPGtGK 228 (437)
T 4b4t_L 205 EIFQRVGIKPPKGVLLYGPPGTGK 228 (437)
T ss_dssp HHHHHHCCCCCCEEEEESCTTSSH
T ss_pred HHHHhCCCCCCCeEEEECCCCCcH
Confidence 4566554 468999999999998
No 266
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.99 E-value=0.078 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=17.4
Q ss_pred HHHHHH--hccccEEEECCCCCCC
Q psy6129 362 QLYETQ--RVRHGIMTLGPTGAVT 383 (383)
Q Consensus 362 ~l~~~l--~~~~gviLvG~~GsGK 383 (383)
.+|+.+ ..++|++|+|||||||
T Consensus 196 ~~~~~~g~~~prGiLL~GPPGtGK 219 (428)
T 4b4t_K 196 DLYEQIGIDPPRGVLLYGPPGTGK 219 (428)
T ss_dssp HHHHHHCCCCCCEEEEESCTTTTH
T ss_pred HHHHhCCCCCCceEEEECCCCCCH
Confidence 455555 3478999999999998
No 267
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.99 E-value=0.033 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.6
Q ss_pred CCcCCCCCCccHHHHHHHHHhCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
.++|++|+|||++++.|++.++.
T Consensus 4 ~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 4 AIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999863
No 268
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.96 E-value=0.12 Score=45.48 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=32.4
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC--CcEEEEeCCCCCCHHHHHHHHhhhhhcCc
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA--KYVVVFNCSDQMDYRGLGRIYKGLAQSGS 142 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg--~~~~~~~c~~~~~~~~l~~~l~g~~~~g~ 142 (383)
...+.||+|+|||+.++.|++.++ ..++...-... ..++..+......|.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~---~~~g~~i~~~~~~~~ 79 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGG---VPTGEEIRKIVLEGN 79 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTT---CHHHHHHHHHTTC--
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCC---CchHHHHHHHHhCCC
Confidence 345789999999999999999986 45544332222 235555655555554
No 269
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.94 E-value=0.09 Score=49.86 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+++||+|+|||++++.++..+
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999999865
No 270
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.80 E-value=0.2 Score=46.46 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=27.2
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQ 124 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~ 124 (383)
.++||+|+|||+++..+|..+ |..+..+.|+..
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 467999999999999999876 667788888753
No 271
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.76 E-value=0.15 Score=46.40 Aligned_cols=35 Identities=17% Similarity=0.033 Sum_probs=26.2
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh----CCcEEEEeCC
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL----AKYVVVFNCS 122 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~ 122 (383)
+.-..+.||+|+|||++++.+|..+ |.++..++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 3334578999999999999988765 5566666553
No 272
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.76 E-value=0.3 Score=42.78 Aligned_cols=39 Identities=13% Similarity=-0.026 Sum_probs=30.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRG 129 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~ 129 (383)
.++.|++|+|||+++-++|..+ |..+.++..+++-....
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~ 50 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAET 50 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhH
Confidence 4467999999999998888765 78888888887655543
No 273
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.72 E-value=0.11 Score=48.26 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=24.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCS 122 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~ 122 (383)
..++||+|+|||++++.+|..+ |..+....++
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 3578999999999999999876 3445555554
No 274
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.72 E-value=0.094 Score=47.92 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.4
Q ss_pred CCcCCCCCCccHHHHHHHHHhCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
.+.||+|+|||++++.++..++.
T Consensus 35 ~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 35 FFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhhh
Confidence 36899999999999999998863
No 275
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.65 E-value=0.15 Score=50.39 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=28.5
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQM 125 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~ 125 (383)
+++|++|+|||+++..||..+ |+.+..+.|+..-
T Consensus 105 ~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 105 MFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 468999999999999999877 7888888886543
No 276
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.64 E-value=0.3 Score=48.24 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=37.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC-----cEEEEeCCCCCCHHHHHHHHhhhhhcCceEEeccc
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK-----YVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEF 149 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~-----~~~~~~c~~~~~~~~l~~~l~g~~~~g~w~~~dei 149 (383)
..+.|.+|+|||++.+.||+.|+. ++..+..+. + ..++.+..-++..|..++...+
T Consensus 398 I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~--~-~ei~~va~~~~~~G~~Vv~~~~ 458 (511)
T 1g8f_A 398 IVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN--K-TELLSLIQDFIGSGSGLIIPDQ 458 (511)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT--C-HHHHTTHHHHHHTTCEEEESSC
T ss_pred EEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC--c-HHHHHHHHHHHhcCCeEEEecC
Confidence 347899999999999999999975 444555444 2 2244444445566665555443
No 277
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.59 E-value=0.16 Score=51.38 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=26.0
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVF 119 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~ 119 (383)
..++|.+|+|||++++.|++.| |.+++.+
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3578999999999999999999 9988776
No 278
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.39 E-value=0.3 Score=45.09 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=29.2
Q ss_pred CCcCCCCCCccHHHHHHHHHh-----CCcEEEEeCCCCCCHHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRGL 130 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l-----g~~~~~~~c~~~~~~~~l 130 (383)
.+.||+|+|||+++-+++... |..+..+++-+..+....
T Consensus 32 eI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra 75 (333)
T 3io5_A 32 ILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYL 75 (333)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHH
Confidence 357999999999987665543 667888888877765543
No 279
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.39 E-value=0.13 Score=43.08 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=23.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCS 122 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~ 122 (383)
..+.||+|+|||++++.++..+ |..+-.+...
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 3478999999999999988764 5555555543
No 280
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.37 E-value=0.11 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
..+.||+|+|||++++.++..++
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 34789999999999999999887
No 281
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.34 E-value=0.64 Score=40.26 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=38.1
Q ss_pred CcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH--H-HHHH---Hh--------hh---hh-cCceEEeccccc
Q psy6129 93 PCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR--G-LGRI---YK--------GL---AQ-SGSWGCFDEFNR 151 (383)
Q Consensus 93 l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~--~-l~~~---l~--------g~---~~-~g~w~~~dein~ 151 (383)
++||.|+|||+.+-.++... |+.++++.+.-+..+. . .+++ +. .+ +. .=..+++||++-
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViIDEaQF 112 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAIDEVQF 112 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEECCGGG
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEEECccc
Confidence 58999999998886665543 7888888766554322 1 2222 00 01 11 124678999999
Q ss_pred CChhhHH
Q psy6129 152 IELPVLS 158 (383)
Q Consensus 152 l~~~~ls 158 (383)
++++.+.
T Consensus 113 ~~~~~V~ 119 (214)
T 2j9r_A 113 FDGDIVE 119 (214)
T ss_dssp SCTTHHH
T ss_pred CCHHHHH
Confidence 9887653
No 282
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.09 E-value=0.13 Score=49.51 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
.+++||+|+|||++++.++..+.
T Consensus 170 i~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhcC
Confidence 35789999999999999998875
No 283
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.02 E-value=0.33 Score=45.66 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=29.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR 128 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~ 128 (383)
..+.||+|+|||+++.++|... |..+..++.....+..
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 106 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH
Confidence 3478999999999999888754 6778888886655543
No 284
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.00 E-value=0.38 Score=45.98 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=31.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---------CCcEEEEeCCCCCCHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---------AKYVVVFNCSDQMDYRGLGRIY 134 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---------g~~~~~~~c~~~~~~~~l~~~l 134 (383)
..+.||+|+|||++++.++... +..++.++.....+...+.++.
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a 233 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA 233 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHH
Confidence 3478999999999999887543 2346777777666666555443
No 285
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.89 E-value=0.17 Score=52.99 Aligned_cols=37 Identities=27% Similarity=0.221 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 75 DRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 75 ~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+.-...+..++. ....++.||||||||+++..++..+
T Consensus 359 ~~Q~~Av~~~l~-~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 359 HSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp HHHHHHHHHHHT-SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 333344444443 2334678999999999998776654
No 286
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.88 E-value=0.14 Score=48.17 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=23.2
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNC 121 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c 121 (383)
.++||+|+|||++++.+|..+ +..+....+
T Consensus 161 ~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~ 193 (359)
T 2og2_A 161 MIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 193 (359)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred EEEcCCCChHHHHHHHHHhhccccCCEEEEecc
Confidence 478999999999999999876 344444444
No 287
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.66 E-value=0.29 Score=43.74 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=12.5
Q ss_pred cccEEEECCCCCCC
Q psy6129 370 RHGIMTLGPTGAVT 383 (383)
Q Consensus 370 ~~gviLvG~~GsGK 383 (383)
.++++|+||||+||
T Consensus 64 ~~~vLl~G~~GtGK 77 (272)
T 1d2n_A 64 LVSVLLEGPPHSGK 77 (272)
T ss_dssp EEEEEEECSTTSSH
T ss_pred CeEEEEECCCCCcH
Confidence 46699999999998
No 288
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.60 E-value=0.11 Score=45.81 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=19.9
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+....++||.|+|||++++.++..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445689999999999999877644
No 289
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.59 E-value=0.14 Score=45.43 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.8
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.-..+.||.|+|||++++.++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 344589999999999999988754
No 290
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.47 E-value=0.15 Score=41.54 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.2
Q ss_pred CCcCCCCCCccHHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l 112 (383)
+++||.|+|||+++.++.-.+
T Consensus 27 ~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999998876
No 291
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.42 E-value=0.19 Score=49.80 Aligned_cols=31 Identities=29% Similarity=0.245 Sum_probs=24.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC---CcEEEEeC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA---KYVVVFNC 121 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~c 121 (383)
.+++|.+|+|||++++.||+.+| ....+|+.
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~ 71 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV 71 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence 45789999999999999999884 44555553
No 292
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.30 E-value=0.12 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=17.4
Q ss_pred HHHHHHh--ccccEEEECCCCCCC
Q psy6129 362 QLYETQR--VRHGIMTLGPTGAVT 383 (383)
Q Consensus 362 ~l~~~l~--~~~gviLvG~~GsGK 383 (383)
.+|+.+. .++||+|+|||||||
T Consensus 206 e~f~~~Gi~~prGvLLyGPPGTGK 229 (437)
T 4b4t_I 206 ELYEEMGIKPPKGVILYGAPGTGK 229 (437)
T ss_dssp HHHHHHTCCCCSEEEEESSTTTTH
T ss_pred HHHHhCCCCCCCCCceECCCCchH
Confidence 4555554 468999999999998
No 293
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.26 E-value=0.33 Score=42.36 Aligned_cols=39 Identities=26% Similarity=0.187 Sum_probs=26.6
Q ss_pred CCcCCCCCCccHHHHHHHHH----hCCcEEEEeCCCCCCHHHHHH
Q psy6129 92 SPCGPAGTGKTETVKDMGKT----LAKYVVVFNCSDQMDYRGLGR 132 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~----lg~~~~~~~c~~~~~~~~l~~ 132 (383)
.+.|+||+|||+++.++|.. .|.+++.+... ++...+.+
T Consensus 34 ~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E--~~~~~~~~ 76 (251)
T 2zts_A 34 LLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE--ERARDLRR 76 (251)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS--SCHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc--CCHHHHHH
Confidence 46899999999999887643 36676666543 44555443
No 294
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.11 E-value=0.41 Score=53.83 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=28.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQM 125 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~ 125 (383)
.+++||||||||.++++++... |-|.+.+.+.+..
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~ 1122 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1122 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccch
Confidence 4578999999999999988644 6778888887655
No 295
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.08 E-value=0.25 Score=42.93 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=25.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCcEEEEeCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKYVVVFNCS 122 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c~ 122 (383)
..+.|++|+|||+.++.+++.++.....+...
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep 39 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQPNCKLLKFP 39 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCSSEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccceEEEec
Confidence 45679999999999999999999765555433
No 296
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.02 E-value=0.075 Score=44.52 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
..++||+|+|||++++.++..+.
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 45789999999999999998874
No 297
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.01 E-value=0.13 Score=43.02 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.3
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
+.+.++.|++|+|||+++.+|.+. |..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~ 42 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQ 42 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCe
Confidence 456788999999999999998873 544
No 298
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.98 E-value=0.12 Score=45.28 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=19.8
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+.-..++||.|+|||++++.++..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3345689999999999999877644
No 299
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.97 E-value=0.11 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=17.7
Q ss_pred HHHHHHh--ccccEEEECCCCCCC
Q psy6129 362 QLYETQR--VRHGIMTLGPTGAVT 383 (383)
Q Consensus 362 ~l~~~l~--~~~gviLvG~~GsGK 383 (383)
.+|+.+. .++||+|+|||||||
T Consensus 233 e~f~~~Gi~pprGILLyGPPGTGK 256 (467)
T 4b4t_H 233 ERFATLGIDPPKGILLYGPPGTGK 256 (467)
T ss_dssp HHHHHHTCCCCSEEEECSCTTSSH
T ss_pred HHHHHCCCCCCCceEeeCCCCCcH
Confidence 4555554 578999999999998
No 300
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.85 E-value=0.16 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l 112 (383)
..++||+|+|||++++.++...
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999876
No 301
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=87.76 E-value=0.24 Score=42.87 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.1
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhCCcEE
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLAKYVV 117 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg~~~~ 117 (383)
.+.|+|..|||||+..+.|++ +|.+++
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vi 37 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLV 37 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEE
Confidence 345899999999999999998 898853
No 302
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.74 E-value=0.15 Score=47.99 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
..++||+|+|||++++.++..+...
T Consensus 173 ~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999999987644
No 303
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=87.66 E-value=0.31 Score=50.98 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=21.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHh----CCcEEEEeC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL----AKYVVVFNC 121 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c 121 (383)
.++.||||||||.++..+...+ +..+.+...
T Consensus 378 ~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~ 412 (802)
T 2xzl_A 378 SLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAP 412 (802)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 4678999999999987665433 455554443
No 304
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.66 E-value=0.05 Score=48.74 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=20.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
..+.|+.|+|||+.++.|++.++
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999984
No 305
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.46 E-value=0.085 Score=45.90 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=20.6
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.-..+.||.|+|||++++.++..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445689999999999999987654
No 306
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.44 E-value=0.15 Score=45.83 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=20.0
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+.-..+.||.|+|||++++.++..+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3345689999999999999887654
No 307
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.34 E-value=0.15 Score=45.05 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=20.8
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.-..++||.|+|||++++.++..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445689999999999999987654
No 308
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.28 E-value=0.15 Score=45.81 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=20.6
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.-..++||.|+|||++++.++..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33445689999999999999987654
No 309
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.28 E-value=0.16 Score=45.83 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=19.7
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.-..+.||+|+|||+++..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 334578999999999999988654
No 310
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.23 E-value=0.15 Score=46.09 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=20.8
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.-..++||.|+|||++++.++..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 33445689999999999999987755
No 311
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.18 E-value=0.32 Score=45.33 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=27.8
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD 126 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~ 126 (383)
.+.|++|+|||+++..++..+ |..+.++.+...++
T Consensus 60 ~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 60 GVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 97 (341)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence 478999999999999998775 77777888777654
No 312
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.18 E-value=0.15 Score=43.10 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.6
Q ss_pred CCCcCCCCCCccHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~ 111 (383)
..++||+|+|||++++.++..
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 468899999999999998874
No 313
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.17 E-value=0.19 Score=44.09 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=19.2
Q ss_pred HHHHccCCCCCcCCCCCCccHHHHH
Q psy6129 83 QALTMSMGGSPCGPAGTGKTETVKD 107 (383)
Q Consensus 83 ~al~~~~~~~l~Gp~GtGKT~~i~~ 107 (383)
.++..+...++.||+|+|||+++..
T Consensus 71 ~~i~~g~~~~i~g~TGsGKTt~~~~ 95 (235)
T 3llm_A 71 EAISQNSVVIIRGATGCGKTTQVPQ 95 (235)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHH
T ss_pred HHHhcCCEEEEEeCCCCCcHHhHHH
Confidence 3445566678899999999987764
No 314
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.06 E-value=0.16 Score=45.48 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=20.6
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+....+.||.|+|||++++.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33445689999999999999987654
No 315
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.92 E-value=0.19 Score=44.68 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.2
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHH
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
.+.-..+.||.|+|||++++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344568999999999999998865
No 316
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.82 E-value=0.2 Score=47.58 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.9
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+....|.||+|+|||++++.+|...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3344589999999999999999876
No 317
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.82 E-value=0.44 Score=43.46 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=27.6
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQM 125 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~ 125 (383)
.++|++|+|||+++..+|..+ |..+..+.++..-
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 467999999999999999876 5677788886653
No 318
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.80 E-value=2.4 Score=48.54 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=57.4
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHH---hCCcEEEEeCCCCCCHHHHH---------------------HHHhhhh--hc
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKT---LAKYVVVFNCSDQMDYRGLG---------------------RIYKGLA--QS 140 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~---lg~~~~~~~c~~~~~~~~l~---------------------~~l~g~~--~~ 140 (383)
.+...+++||+|||||+++.+++.. .|.++..+.+.+..+.-... ++..-+. ..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~ 1159 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1159 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhCC
Confidence 3444567899999999999987753 37888899888765543322 2222222 33
Q ss_pred CceEEecccccCChh-hHH-------------HHHHHHHHHHHHHHhcCce
Q psy6129 141 GSWGCFDEFNRIELP-VLS-------------VAAQQVAVVLAAKKEKKKS 177 (383)
Q Consensus 141 g~w~~~dein~l~~~-~ls-------------~l~~~~~~i~~~~~~~~~~ 177 (383)
...+++|++.-+.+. -.. .+++.+..+...+.+++..
T Consensus 1160 ~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~st 1210 (2050)
T 3cmu_A 1160 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 1210 (2050)
T ss_dssp CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred CCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeE
Confidence 578999999988442 211 2455566666555555433
No 319
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.78 E-value=0.32 Score=44.77 Aligned_cols=41 Identities=15% Similarity=0.019 Sum_probs=28.9
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHH
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGL 130 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l 130 (383)
+.-.++.|+||+|||+++.++|... |.++..|.+- ++...+
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE--~s~~~l 111 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE--MGKKEN 111 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS--SCHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC--CCHHHH
Confidence 3334578999999999999988654 4566666654 555553
No 320
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.78 E-value=0.17 Score=47.59 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=20.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+....+.||+|+|||++++.+|...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3345689999999999999998765
No 321
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.73 E-value=0.37 Score=41.31 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=27.3
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC--cEEEEeCCCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK--YVVVFNCSDQMD 126 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~--~~~~~~c~~~~~ 126 (383)
.+++|++|+|||+++..++..++. .+..+.+...++
T Consensus 33 i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~ 70 (221)
T 2wsm_A 33 VNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK 70 (221)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc
Confidence 457899999999999999988753 355666666543
No 322
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.71 E-value=0.2 Score=45.02 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=20.7
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.-..++||.|+|||++++.++..+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34445689999999999999988753
No 323
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.70 E-value=0.17 Score=44.79 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=20.5
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+....++||.|+|||++++.++..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33445689999999999999877654
No 324
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.68 E-value=0.14 Score=50.05 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=20.6
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+.-..++||.|+|||++++.++...
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3345588999999999999998865
No 325
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.66 E-value=0.17 Score=44.74 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=20.0
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+.-..+.||.|+|||++++.++..+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3345689999999999999887654
No 326
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.57 E-value=0.18 Score=44.29 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=21.0
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.-..++||.|+|||++++.++..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34445689999999999999988765
No 327
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.56 E-value=0.48 Score=43.01 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=11.3
Q ss_pred cEEEECCCCCCC
Q psy6129 372 GIMTLGPTGAVT 383 (383)
Q Consensus 372 gviLvG~~GsGK 383 (383)
+++|+||||+||
T Consensus 69 ~vll~G~~GtGK 80 (309)
T 3syl_A 69 HMSFTGNPGTGK 80 (309)
T ss_dssp EEEEEECTTSSH
T ss_pred eEEEECCCCCCH
Confidence 599999999998
No 328
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.54 E-value=0.23 Score=48.66 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=23.3
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCS 122 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~ 122 (383)
.++||+|+|||++++.||..+ |..+....++
T Consensus 297 ~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 297 LMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred EEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 378999999999999999876 3344444443
No 329
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.49 E-value=0.18 Score=44.89 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=20.5
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.-..++||.|+|||++++.++..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445689999999999999877654
No 330
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.47 E-value=0.21 Score=46.98 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=20.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+....+.||+|+|||++++.+|...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445689999999999999998765
No 331
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.45 E-value=0.38 Score=44.77 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=24.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCS 122 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~ 122 (383)
..+.||+|+|||++++.++..+ +..+.+....
T Consensus 58 v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 3478999999999999999876 4555555443
No 332
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.45 E-value=2.9 Score=47.15 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=45.2
Q ss_pred CCCCcCCCCCCccHHHHHHHHH---hCCcEEEEeCCCCCCHHHH---------------------HHHHhhhh--hcCce
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKT---LAKYVVVFNCSDQMDYRGL---------------------GRIYKGLA--QSGSW 143 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~---lg~~~~~~~c~~~~~~~~l---------------------~~~l~g~~--~~g~w 143 (383)
..+++||||||||.++.+++.. -|..++.+.+....+.... .+++.-+. .....
T Consensus 36 i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~~L 115 (1706)
T 3cmw_A 36 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 115 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccCCCE
Confidence 3457899999999999988764 3677888887776553332 23333332 23568
Q ss_pred EEecccccCChh
Q psy6129 144 GCFDEFNRIELP 155 (383)
Q Consensus 144 ~~~dein~l~~~ 155 (383)
+++|++..+...
T Consensus 116 VVIDSLt~L~~~ 127 (1706)
T 3cmw_A 116 IVVDSVAALTPK 127 (1706)
T ss_dssp EEESCSTTCCCH
T ss_pred EEEcchhhhccc
Confidence 899999987654
No 333
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.41 E-value=0.18 Score=45.29 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=20.1
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+.-..+.||.|+|||++++.++..+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3345689999999999999987654
No 334
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.38 E-value=0.21 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.3
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
....+.||+|+|||++++.+|...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 334588999999999999998765
No 335
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.38 E-value=0.18 Score=43.26 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=21.1
Q ss_pred CCcCCCCCCccHHHHHHHHHhCCc
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAKY 115 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~~ 115 (383)
+++||.|+|||+++.++..+++-+
T Consensus 27 ~I~G~NgsGKStil~ai~~~l~g~ 50 (203)
T 3qks_A 27 LIIGQNGSGKSSLLDAILVGLYWP 50 (203)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCHHHHHHHHHHHhcCC
Confidence 578999999999999999888653
No 336
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.34 E-value=0.46 Score=45.77 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQM 125 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~ 125 (383)
.++||+|+|||+++..+|..+ |..+..+.|+..-
T Consensus 102 ~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 102 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 467999999999999999877 5678888886543
No 337
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.26 E-value=0.51 Score=42.32 Aligned_cols=15 Identities=27% Similarity=0.747 Sum_probs=13.4
Q ss_pred ccccEEEECCCCCCC
Q psy6129 369 VRHGIMTLGPTGAVT 383 (383)
Q Consensus 369 ~~~gviLvG~~GsGK 383 (383)
...|++|+|||||||
T Consensus 72 ~~~gvll~Gp~GtGK 86 (278)
T 1iy2_A 72 IPKGVLLVGPPGVGK 86 (278)
T ss_dssp CCCEEEEECCTTSSH
T ss_pred CCCeEEEECCCcChH
Confidence 467899999999998
No 338
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=86.25 E-value=0.25 Score=42.57 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=12.4
Q ss_pred cccEEEECCCCCCC
Q psy6129 370 RHGIMTLGPTGAVT 383 (383)
Q Consensus 370 ~~gviLvG~~GsGK 383 (383)
+++++++||||+||
T Consensus 58 kn~ili~GPPGtGK 71 (212)
T 1tue_A 58 KNCLVFCGPANTGK 71 (212)
T ss_dssp CSEEEEESCGGGCH
T ss_pred ccEEEEECCCCCCH
Confidence 35799999999998
No 339
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.15 E-value=0.22 Score=46.89 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.2
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
....+.||+|+|||++++.+|...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 334588999999999999998765
No 340
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=86.15 E-value=0.71 Score=41.73 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=27.3
Q ss_pred CCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC
Q psy6129 95 GPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD 126 (383)
Q Consensus 95 Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~ 126 (383)
+-.|+|||+++-.||..+ |+.+..+.++.+-+
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~ 78 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQAT 78 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 478999999999999876 78899999988754
No 341
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.10 E-value=0.19 Score=40.36 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=17.4
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++.|++|+|||++++.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999875
No 342
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.08 E-value=0.15 Score=44.68 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred CCcCCCCCCccHHHHHHHHHhC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg 113 (383)
.++||+|+|||++++.++..+.
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999874
No 343
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.00 E-value=0.2 Score=44.86 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=20.0
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+.-..+.||.|+|||++++.++..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3345689999999999999887654
No 344
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=85.98 E-value=1.7 Score=36.98 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=39.0
Q ss_pred CCcCCCCCCcc-HHHHHHHHH--hCCcEEEEeCCCCCCHH-H-HHHH---H-----------hhhhhcCceEEecccccC
Q psy6129 92 SPCGPAGTGKT-ETVKDMGKT--LAKYVVVFNCSDQMDYR-G-LGRI---Y-----------KGLAQSGSWGCFDEFNRI 152 (383)
Q Consensus 92 ~l~Gp~GtGKT-~~i~~la~~--lg~~~~~~~c~~~~~~~-~-l~~~---l-----------~g~~~~g~w~~~dein~l 152 (383)
.++||.|+||| ++++.+.+. -|+.++.+...-++.+. . .+++ . ......=..+.+||+.-+
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEaQFf 103 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFF 103 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSGGGC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEchhhh
Confidence 46899999999 777776653 46778888644333221 1 1222 0 011233357889999988
Q ss_pred Chhh
Q psy6129 153 ELPV 156 (383)
Q Consensus 153 ~~~~ 156 (383)
++.
T Consensus 104 -k~~ 106 (195)
T 1w4r_A 104 -PDI 106 (195)
T ss_dssp -TTH
T ss_pred -HHH
Confidence 553
No 345
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=85.97 E-value=0.31 Score=48.88 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=25.0
Q ss_pred CCcCCCCCCccHHHHHHHHHhC----CcEEEEe
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLA----KYVVVFN 120 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg----~~~~~~~ 120 (383)
.+.|++|+|||++++.|++.++ ++++.+.
T Consensus 400 ~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 400 FLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 4689999999999999999987 6776665
No 346
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.96 E-value=0.2 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.0
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
-..+.||.|+|||++++.++..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999877654
No 347
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.94 E-value=0.22 Score=41.86 Aligned_cols=23 Identities=17% Similarity=0.266 Sum_probs=19.3
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
-..++||+|+|||++++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 34689999999999999988643
No 348
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=85.85 E-value=0.24 Score=46.91 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=20.6
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+....+.||+|+|||++++.+|...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3344689999999999999998765
No 349
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.84 E-value=0.3 Score=42.90 Aligned_cols=23 Identities=35% Similarity=0.247 Sum_probs=20.7
Q ss_pred CCCcCCCCCCccHHHHHHHHHhC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
..+.|+.|+|||+.++.|++.+.
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999994
No 350
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.76 E-value=0.2 Score=44.87 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=20.4
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+....++||.|+|||++++.++..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34445689999999999999877543
No 351
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.65 E-value=0.21 Score=45.30 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=20.7
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.-..++||.|+|||++++.++..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33445689999999999999987655
No 352
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=85.61 E-value=0.24 Score=46.85 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=20.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+....+.||+|+|||++++.+|...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3345689999999999999998765
No 353
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.42 E-value=0.21 Score=44.51 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=20.9
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+.-..+.||.|+|||++++.++..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33445689999999999999988765
No 354
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.38 E-value=0.21 Score=44.99 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=20.5
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+....++||.|+|||++++.++..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33445689999999999999877654
No 355
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.31 E-value=0.22 Score=44.79 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=20.3
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+....+.||.|+|||++++.++..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445689999999999999987654
No 356
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.09 E-value=0.31 Score=46.80 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=19.7
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
-..++||+|+|||++++.++...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999998743
No 357
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.07 E-value=0.23 Score=40.19 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.1
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||++++.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 356789999999999999875
No 358
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=84.89 E-value=0.59 Score=43.70 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQM 125 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~ 125 (383)
..++|+||+|||+++..++..+ +..+.++.....+
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred EEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3478999999999999999765 4455566555443
No 359
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=84.73 E-value=0.19 Score=41.88 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.5
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
++++|++|+|||++++.++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 56899999999999998765
No 360
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=84.73 E-value=0.25 Score=39.81 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=18.0
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.+++.|++|+|||+++..+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 356889999999999998875
No 361
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.72 E-value=0.24 Score=44.42 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=20.7
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+.-..+.||.|+|||++++.++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3345689999999999999988766
No 362
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=84.64 E-value=0.33 Score=41.28 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=27.2
Q ss_pred ceeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHH
Q psy6129 67 RLVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.+-++|.-.+++..+. .+..+++.+|+|+|||.++-..+.
T Consensus 31 ~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp CCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHH
Confidence 3445666555544432 456778899999999998866554
No 363
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=84.46 E-value=0.45 Score=44.51 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=24.0
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.+.-..+.||+|+|||++++.++.......
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 333456899999999999999999986543
No 364
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.43 E-value=0.26 Score=41.20 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.1
Q ss_pred CCCcCCCCCCccHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~ 111 (383)
++++|++|+|||+++..+...
T Consensus 51 i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999998764
No 365
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.41 E-value=0.25 Score=42.27 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHh
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+++|++|+|||+++..++...
T Consensus 15 i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 15 IIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999988754
No 366
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=84.40 E-value=0.31 Score=39.73 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=17.5
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
..+.|++|+|||++++.++.
T Consensus 6 v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 46889999999999999864
No 367
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=84.22 E-value=0.33 Score=47.15 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=27.9
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCCCCCHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSDQMDYRGL 130 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~~~~~~~l 130 (383)
-.++.|+||+|||+++..+|... |.++..+... ++...+
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E--~s~~~l 247 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE--MSAQQL 247 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS--SCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC--CCHHHH
Confidence 34578999999999999888743 5677777653 444443
No 368
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.19 E-value=0.27 Score=46.81 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.3
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.+....+.||+|+|||++++.+|...
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34445689999999999999998765
No 369
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.18 E-value=0.2 Score=46.94 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=20.6
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+....+.||+|+|||++++.+|...
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3344589999999999999998765
No 370
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.17 E-value=0.26 Score=43.51 Aligned_cols=16 Identities=31% Similarity=0.798 Sum_probs=14.2
Q ss_pred hccccEEEECCCCCCC
Q psy6129 368 RVRHGIMTLGPTGAVT 383 (383)
Q Consensus 368 ~~~~gviLvG~~GsGK 383 (383)
..++|++|+|||||||
T Consensus 47 ~~~~g~ll~G~~G~GK 62 (254)
T 1ixz_A 47 RIPKGVLLVGPPGVGK 62 (254)
T ss_dssp CCCSEEEEECCTTSSH
T ss_pred CCCCeEEEECCCCCCH
Confidence 4578899999999998
No 371
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=84.13 E-value=0.25 Score=41.04 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=17.7
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
..++|++|+|||++++.++.
T Consensus 10 i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999875
No 372
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.96 E-value=0.27 Score=39.73 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=17.4
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
+++.|++|+|||+++..+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46789999999999998864
No 373
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.95 E-value=0.24 Score=39.79 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.0
Q ss_pred CCCcCCCCCCccHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~ 111 (383)
+++.|++|+|||+++..++..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999988753
No 374
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=83.87 E-value=0.26 Score=40.16 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=17.6
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||++++.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 356889999999999988753
No 375
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.82 E-value=0.34 Score=44.75 Aligned_cols=24 Identities=21% Similarity=0.500 Sum_probs=20.8
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
.+++||.|+|||++++++.-.+|.
T Consensus 27 ~~i~G~NGsGKS~ll~ai~~llg~ 50 (322)
T 1e69_A 27 TAIVGPNGSGKSNIIDAIKWVFGE 50 (322)
T ss_dssp EEEECCTTTCSTHHHHHHHHTSCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 357899999999999999988764
No 376
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=83.81 E-value=0.29 Score=39.68 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=18.4
Q ss_pred CCCCcCCCCCCccHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
.++++|++|+|||++++.+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3568899999999999988753
No 377
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.78 E-value=0.26 Score=42.78 Aligned_cols=23 Identities=30% Similarity=0.163 Sum_probs=20.0
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
...+.|++|+|||+.++.|++.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999887
No 378
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=83.76 E-value=0.29 Score=40.08 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.9
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 356889999999999998864
No 379
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=83.74 E-value=0.25 Score=43.58 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=30.9
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh---CCc-EEEEeCCCCCCHHHHHHHHhhhhh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL---AKY-VVVFNCSDQMDYRGLGRIYKGLAQ 139 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l---g~~-~~~~~c~~~~~~~~l~~~l~g~~~ 139 (383)
....+.|++|+|||+.++.|++.+ |.. ..... .+.- ..++..+.....
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r-ep~~--t~~g~~ir~~l~ 79 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR-EPGG--TLLAEKLRALVK 79 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE-SSCS--SHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec-CCCC--CHHHHHHHHHHh
Confidence 334568999999999999999877 455 33333 2221 235666655543
No 380
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=83.74 E-value=0.28 Score=39.49 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=17.6
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
+++.|++|+|||++++.+..
T Consensus 7 i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 56789999999999998874
No 381
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=83.68 E-value=0.29 Score=39.62 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=18.4
Q ss_pred CCCCcCCCCCCccHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
-++++|++|+|||++++.+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3567899999999999998653
No 382
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.66 E-value=0.16 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.3
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
...++|++|+|||++++.||..++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhc
Confidence 345899999999999999999985
No 383
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=83.49 E-value=0.3 Score=40.07 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.1
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 456889999999999998865
No 384
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.45 E-value=0.28 Score=47.56 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=23.9
Q ss_pred ccCCCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 87 MSMGGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 87 ~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
.+.-..+.||+|+|||++++.++.......
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 333345899999999999999999986543
No 385
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.31 E-value=0.36 Score=45.49 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.5
Q ss_pred CCcCCCCCCccHHHHHHHHHh
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l 112 (383)
+++||.|+|||+++.+++.++
T Consensus 27 ~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 27 VVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999988764
No 386
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=83.25 E-value=0.78 Score=42.24 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=12.0
Q ss_pred ccEEEECCCCCCC
Q psy6129 371 HGIMTLGPTGAVT 383 (383)
Q Consensus 371 ~gviLvG~~GsGK 383 (383)
.+|+|+||||+||
T Consensus 56 ~~vll~G~~GtGK 68 (338)
T 3pfi_A 56 DHILFSGPAGLGK 68 (338)
T ss_dssp CCEEEECSTTSSH
T ss_pred CeEEEECcCCCCH
Confidence 4699999999998
No 387
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=83.24 E-value=0.8 Score=38.63 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=12.3
Q ss_pred ccEEEECCCCCCC
Q psy6129 371 HGIMTLGPTGAVT 383 (383)
Q Consensus 371 ~gviLvG~~GsGK 383 (383)
.+++|+||+|+||
T Consensus 55 ~~~~l~G~~GtGK 67 (202)
T 2w58_A 55 KGLYLHGSFGVGK 67 (202)
T ss_dssp CEEEEECSTTSSH
T ss_pred CeEEEECCCCCCH
Confidence 6899999999998
No 388
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=83.18 E-value=0.79 Score=41.70 Aligned_cols=45 Identities=16% Similarity=0.046 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEE
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVF 119 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~ 119 (383)
+|.-.+++.. +..+...++.+|+|+|||...-..+...+...+++
T Consensus 18 ~~~Q~~~i~~----i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv 62 (337)
T 2z0m_A 18 TEVQSKTIPL----MLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVV 62 (337)
T ss_dssp CHHHHHHHHH----HHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHH----HhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEE
Confidence 4554554433 34566788899999999987655554455554444
No 389
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=83.16 E-value=0.37 Score=45.43 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=21.0
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
+.-..+.||.|+|||++++.++....
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 33455899999999999999887653
No 390
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=83.14 E-value=0.31 Score=39.32 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=17.7
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
+++.|++|+|||++++.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 46789999999999999875
No 391
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=83.02 E-value=0.27 Score=39.78 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=17.5
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
++++|++|+|||+++..+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 46789999999999998874
No 392
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=82.96 E-value=0.32 Score=39.33 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=18.0
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 356789999999999999875
No 393
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=82.85 E-value=0.3 Score=39.59 Aligned_cols=19 Identities=26% Similarity=0.421 Sum_probs=16.7
Q ss_pred CCCcCCCCCCccHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMG 109 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la 109 (383)
++++|++|+|||+++..+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4578999999999999885
No 394
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.82 E-value=0.31 Score=42.55 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=18.6
Q ss_pred CCCcCCCCCCccHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~ 111 (383)
..+.||.|+|||++++.++..
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 347899999999999999887
No 395
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=82.81 E-value=0.31 Score=39.48 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=18.0
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
-++++|++|+|||+++..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 356789999999999998875
No 396
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=82.61 E-value=0.33 Score=39.10 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=17.4
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
+++.|++|+|||+++..+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 35789999999999999865
No 397
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=82.56 E-value=0.38 Score=42.03 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=22.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC----cEEE
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK----YVVV 118 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~----~~~~ 118 (383)
..+.|++|+|||+.++.|++.++. .++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 346799999999999999987654 6555
No 398
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=82.56 E-value=0.2 Score=47.08 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=20.0
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
....+.||.|+|||++++.+|...
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 344589999999999999988765
No 399
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.48 E-value=0.66 Score=39.95 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=12.5
Q ss_pred cccEEEECCCCCCC
Q psy6129 370 RHGIMTLGPTGAVT 383 (383)
Q Consensus 370 ~~gviLvG~~GsGK 383 (383)
.++++|+||+|+||
T Consensus 52 ~~~~ll~G~~G~GK 65 (242)
T 3bos_A 52 VQAIYLWGPVKSGR 65 (242)
T ss_dssp CSEEEEECSTTSSH
T ss_pred CCeEEEECCCCCCH
Confidence 46699999999998
No 400
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=82.47 E-value=0.4 Score=45.02 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=19.6
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHH
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
+.-..++||+|+|||++++.|+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHhcc
Confidence 344568999999999999998754
No 401
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.31 E-value=0.55 Score=43.25 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=22.2
Q ss_pred CCcCCCCCCccHHHHHHHHHh-CCcEEEEe
Q psy6129 92 SPCGPAGTGKTETVKDMGKTL-AKYVVVFN 120 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~l-g~~~~~~~ 120 (383)
++.|+.|+|||++++.++... |..+.++.
T Consensus 8 ~i~G~~GaGKTTll~~l~~~~~~~~~aVi~ 37 (318)
T 1nij_A 8 LLTGFLGAGKTTLLRHILNEQHGYKIAVIE 37 (318)
T ss_dssp EEEESSSSSCHHHHHHHHHSCCCCCEEEEC
T ss_pred EEEecCCCCHHHHHHHHHhhcCCCcEEEEE
Confidence 478999999999999998764 44444443
No 402
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=82.28 E-value=0.28 Score=47.20 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=18.4
Q ss_pred CCCcCCCCCCccHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~ 111 (383)
..++||+|+|||++++.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 458999999999999998764
No 403
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.18 E-value=0.34 Score=44.22 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=13.8
Q ss_pred hccccEEEECCCCCCC
Q psy6129 368 RVRHGIMTLGPTGAVT 383 (383)
Q Consensus 368 ~~~~gviLvG~~GsGK 383 (383)
...++++|+|||||||
T Consensus 47 ~~~~~vLL~Gp~GtGK 62 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGK 62 (301)
T ss_dssp CCCSEEEEECSSSSSH
T ss_pred CCCceEEEECCCCcCH
Confidence 3467899999999998
No 404
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=82.18 E-value=0.39 Score=46.48 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=29.5
Q ss_pred CCCcCCCCCCccHHHHHHHHHh----CCcEEEEeCCCCCCHHHH-HHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL----AKYVVVFNCSDQMDYRGL-GRIY 134 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l----g~~~~~~~c~~~~~~~~l-~~~l 134 (383)
.++.|+||+|||+++.++|... |.++..|++ .++...+ .|++
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl--E~~~~~l~~R~~ 249 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL--EMPAAQLTLRMM 249 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC--CCCHHHHHHHHH
Confidence 3578999999999999887643 567777766 3555553 3443
No 405
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=82.15 E-value=0.31 Score=47.59 Aligned_cols=31 Identities=26% Similarity=0.138 Sum_probs=24.1
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC---CcEEEEe
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA---KYVVVFN 120 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg---~~~~~~~ 120 (383)
.++++|.+|+|||++++.||+.++ .+...++
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 356789999999999999999875 3344444
No 406
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=82.12 E-value=0.35 Score=40.04 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.3
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 356889999999999999875
No 407
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=82.05 E-value=0.31 Score=44.38 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=20.5
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
+.-..+.||.|+|||++++.++..+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3345689999999999999988765
No 408
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=82.04 E-value=0.88 Score=41.85 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=31.6
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR 128 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~ 128 (383)
..+.|--|+|||+++-+||.+| |+.+..+.|+.+.+..
T Consensus 51 IAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~ 91 (314)
T 3fwy_A 51 FAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDST 91 (314)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTT
T ss_pred EEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCccc
Confidence 3467889999999999999876 8899999999866543
No 409
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=82.01 E-value=0.36 Score=39.53 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.3
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
++++|++|+|||+++..+..
T Consensus 11 i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 11 VTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp EEEESCTTTTHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 45789999999999998864
No 410
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=81.85 E-value=0.37 Score=40.09 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.4
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 456889999999999999875
No 411
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=81.81 E-value=0.59 Score=44.37 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=26.0
Q ss_pred CCCCCcCCCCCCccHHHHHHHHHhC-----CcEEEEeCCCC
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKTLA-----KYVVVFNCSDQ 124 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~lg-----~~~~~~~c~~~ 124 (383)
.-..++||+|+|||++++.+|+... ..++..-|.+.
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 215 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSC
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCC
Confidence 3356899999999999999998762 23444555544
No 412
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=81.75 E-value=0.71 Score=44.73 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=34.7
Q ss_pred eeechhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHhCCcEEEEeC
Q psy6129 68 LVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNC 121 (383)
Q Consensus 68 lv~Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~lg~~~~~~~c 121 (383)
+-++|--.+++..+ ..+..+++.+|+|+|||..+-..+..++.+++++.-
T Consensus 92 ~~l~~~Q~~ai~~i----~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P 141 (472)
T 2fwr_A 92 ISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (472)
T ss_dssp CCBCHHHHHHHHHH----TTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEES
T ss_pred CCcCHHHHHHHHHH----HhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEEC
Confidence 44566655554433 233457889999999999988777777877666643
No 413
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=81.72 E-value=0.36 Score=39.51 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=17.3
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
++++|++|+|||+++..+..
T Consensus 9 i~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 56789999999999998764
No 414
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=81.72 E-value=0.38 Score=40.18 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.2
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 356889999999999998876
No 415
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=81.67 E-value=0.31 Score=40.19 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=18.2
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
-+.++|++|+|||++++.++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999875
No 416
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=81.65 E-value=0.38 Score=39.29 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=18.3
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||++++.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 456889999999999999875
No 417
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=81.63 E-value=0.34 Score=39.68 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=18.6
Q ss_pred CCCCcCCCCCCccHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
.++++|++|+|||++++.+...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999998764
No 418
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=81.61 E-value=0.33 Score=39.65 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=18.1
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
-++++|++|+|||+++..+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 456889999999999998874
No 419
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=81.60 E-value=0.38 Score=38.98 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=17.9
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
-+++.|++|+|||+++..+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 356889999999999998864
No 420
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=81.58 E-value=1 Score=44.21 Aligned_cols=15 Identities=27% Similarity=0.747 Sum_probs=13.5
Q ss_pred ccccEEEECCCCCCC
Q psy6129 369 VRHGIMTLGPTGAVT 383 (383)
Q Consensus 369 ~~~gviLvG~~GsGK 383 (383)
.++|++|+|||||||
T Consensus 63 ip~GvLL~GppGtGK 77 (499)
T 2dhr_A 63 IPKGVLLVGPPGVGK 77 (499)
T ss_dssp CCSEEEEECSSSSSH
T ss_pred CCceEEEECCCCCCH
Confidence 467899999999998
No 421
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=81.55 E-value=0.36 Score=41.56 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=24.4
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC--cEEEEeCCCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK--YVVVFNCSDQ 124 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~--~~~~~~c~~~ 124 (383)
.+++|++|+|||+++..++..+.. ...++.++..
T Consensus 41 i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 41 FDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 457899999999999999987642 3344544433
No 422
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=81.50 E-value=0.39 Score=39.65 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=17.8
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
++++|++|+|||+++..+..
T Consensus 7 i~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 56789999999999999875
No 423
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=81.50 E-value=0.39 Score=40.05 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.2
Q ss_pred CCCcCCCCCCccHHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~ 111 (383)
++++|++|+|||+++..+...
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999998764
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=81.47 E-value=0.4 Score=39.32 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=18.1
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||++++.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 356889999999999998875
No 425
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.43 E-value=1 Score=43.88 Aligned_cols=30 Identities=13% Similarity=0.322 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHhccccEEEECCCCCCC
Q psy6129 353 HPPWVLKLIQLYETQRVRHGIMTLGPTGAVT 383 (383)
Q Consensus 353 ~~~~i~kv~~l~~~l~~~~gviLvG~~GsGK 383 (383)
.+..+..+.++... ....+++|+||||+||
T Consensus 185 r~~~i~~l~~~l~r-~~~~~~LL~G~pG~GK 214 (468)
T 3pxg_A 185 RSKEIQRVIEVLSR-RTKNNPVLIGEPGVGK 214 (468)
T ss_dssp CHHHHHHHHHHHHC-SSSCEEEEESCTTTTT
T ss_pred cHHHHHHHHHHHhc-cCCCCeEEECCCCCCH
Confidence 34445544443221 2345699999999999
No 426
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=81.35 E-value=0.56 Score=48.05 Aligned_cols=40 Identities=28% Similarity=0.345 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
...+++|..+.. -..+.++++.|++|+|||++.|.+-+.+
T Consensus 79 aiA~~Ay~~m~~-~~~nQsIiisGESGAGKTe~tK~i~~yl 118 (697)
T 1lkx_A 79 ALANDAYRSMRQ-SQENQCVIISGESGAGKTEASKKIMQFL 118 (697)
T ss_dssp HHHHHHHHHHHH-HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCcEEEecCCCCCCchhhHHHHHHHH
Confidence 356777777654 2456777889999999999988765554
No 427
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.28 E-value=0.44 Score=43.03 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=13.4
Q ss_pred ccccEEEECCCCCCC
Q psy6129 369 VRHGIMTLGPTGAVT 383 (383)
Q Consensus 369 ~~~gviLvG~~GsGK 383 (383)
..++++|+|||||||
T Consensus 53 ~~~~vll~Gp~GtGK 67 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGK 67 (297)
T ss_dssp CCSEEEEESSSSSCH
T ss_pred CCCeEEEECcCCCCH
Confidence 357899999999998
No 428
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.26 E-value=0.39 Score=43.11 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=16.4
Q ss_pred HHHHHH--hccccEEEECCCCCCC
Q psy6129 362 QLYETQ--RVRHGIMTLGPTGAVT 383 (383)
Q Consensus 362 ~l~~~l--~~~~gviLvG~~GsGK 383 (383)
++++.+ ...++++|+||||+||
T Consensus 41 ~~~~~~~~~~~~~~ll~G~~GtGK 64 (285)
T 3h4m_A 41 ELFEKVGIEPPKGILLYGPPGTGK 64 (285)
T ss_dssp HHHHHHCCCCCSEEEEESSSSSSH
T ss_pred HHHHhcCCCCCCeEEEECCCCCcH
Confidence 344444 3467899999999998
No 429
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=81.21 E-value=0.44 Score=43.85 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.5
Q ss_pred ccccEEEECCCCCCC
Q psy6129 369 VRHGIMTLGPTGAVT 383 (383)
Q Consensus 369 ~~~gviLvG~~GsGK 383 (383)
..+|++|+|||||||
T Consensus 50 ~~~~vLl~GppGtGK 64 (322)
T 3eie_A 50 PTSGILLYGPPGTGK 64 (322)
T ss_dssp CCCEEEEECSSSSCH
T ss_pred CCCeEEEECCCCCcH
Confidence 467899999999998
No 430
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.20 E-value=0.88 Score=42.36 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=12.0
Q ss_pred ccEEEECCCCCCC
Q psy6129 371 HGIMTLGPTGAVT 383 (383)
Q Consensus 371 ~gviLvG~~GsGK 383 (383)
++++|+||||+||
T Consensus 71 ~~vLl~GppGtGK 83 (368)
T 3uk6_A 71 RAVLIAGQPGTGK 83 (368)
T ss_dssp CEEEEEESTTSSH
T ss_pred CEEEEECCCCCCH
Confidence 4799999999998
No 431
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=81.19 E-value=0.47 Score=43.38 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=17.3
Q ss_pred CCCcCCCCCCccHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMG 109 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la 109 (383)
..+.||+|+|||++++.++
T Consensus 168 ~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998
No 432
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=81.14 E-value=0.31 Score=39.37 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.5
Q ss_pred CCCcCCCCCCccHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMG 109 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la 109 (383)
++++|++|+|||++++.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 4678999999999998874
No 433
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=81.03 E-value=0.36 Score=40.08 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.2
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||++++.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 356789999999999999876
No 434
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=80.98 E-value=0.89 Score=39.55 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=28.8
Q ss_pred cCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCH
Q psy6129 94 CGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDY 127 (383)
Q Consensus 94 ~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~ 127 (383)
.|-.|+|||+++.+||..+ |+.+..+.|+.+-+.
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~l 42 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCL 42 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCH
T ss_pred ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcCh
Confidence 5778999999999999988 678999999986443
No 435
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.98 E-value=4.3 Score=39.15 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=47.8
Q ss_pred ceEEecccccCChhhHHHHHHHHHHHHHHHHhcCceeEecCCcEEEecCCeeEEEeeCCC---------CCCCCcchHHH
Q psy6129 142 SWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPG---------YAGRKELPENL 212 (383)
Q Consensus 142 ~w~~~dein~l~~~~ls~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~if~T~np~---------~~g~~~lp~~l 212 (383)
..+++||+++++.+..+.+ ++.+.+.. .++-+++| |++ ......+|+.+
T Consensus 297 ~VliIDEa~~l~~~a~~aL-------lk~lEe~~--------------~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i 354 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYL-------HRALESSI--------------APIVIFAS-NRGNCVIRGTEDITSPHGIPLDL 354 (456)
T ss_dssp CEEEEESGGGCBHHHHHHH-------HHHTTSTT--------------CCEEEEEE-CCSEEECBTTSSCEEETTCCHHH
T ss_pred eEEEEechhhcCHHHHHHH-------HHHhhccC--------------CCEEEEec-CCccccccccccccccccCChhH
Confidence 4788999999998876654 22222110 11323344 542 22346899999
Q ss_pred HHhccccccCCCCHHHHHHHHH
Q psy6129 213 KIQFRTVAMMVPDRQIIIRVKL 234 (383)
Q Consensus 213 ~~~fr~v~~~~Pd~~~i~ei~l 234 (383)
+++|..+.+..++.+.+.+++.
T Consensus 355 ~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 355 LDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp HTTEEEEECCCCCHHHHHHHHH
T ss_pred HhhcceeeCCCCCHHHHHHHHH
Confidence 9999999999999998888774
No 436
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=80.95 E-value=0.62 Score=48.40 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
...+++|..|.. -..+.++++.|++|+|||++.|.+-+.|
T Consensus 125 aiA~~Ay~~m~~-~~~nQsIiiSGESGAGKTe~tK~i~~yl 164 (784)
T 2v26_A 125 AIADKAFRDMKV-LKLSQSIIVSGESGAGKTENTKFVLRYL 164 (784)
T ss_dssp HHHHHHHHHHHH-HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCcEEEEcCCCCCCceehHHHHHHHH
Confidence 357778877654 2456778889999999999998665544
No 437
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=80.89 E-value=1 Score=45.13 Aligned_cols=46 Identities=15% Similarity=0.008 Sum_probs=33.3
Q ss_pred ceeechhhHHHHHHHHHHHHccCC-CCCcCCCCCCccHHHHHHHHHh
Q psy6129 67 RLVITPLTDRCYITLAQALTMSMG-GSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 67 ~lv~Tp~t~r~~~~l~~al~~~~~-~~l~Gp~GtGKT~~i~~la~~l 112 (383)
....+|--.+++..+..++..+.. +++++|+|+|||.++-.++..+
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHH
Confidence 356778888888888777766544 6788999999999986666544
No 438
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=80.88 E-value=1.5 Score=43.69 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=22.6
Q ss_pred HHHHHHHHHc----cCCCCCcCCCCCCccHHHHHHHH
Q psy6129 78 YITLAQALTM----SMGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 78 ~~~l~~al~~----~~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
...+..++.. ..-+.++||+|+|||++++.+++
T Consensus 133 l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 133 VNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4445555542 12245789999999999998853
No 439
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=80.84 E-value=0.42 Score=39.33 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=18.7
Q ss_pred CCCCCcCCCCCCccHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
..++++|++|+|||++++.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 3456899999999999999874
No 440
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.81 E-value=0.47 Score=44.22 Aligned_cols=42 Identities=24% Similarity=0.174 Sum_probs=30.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHH-HHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGL-GRIY 134 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l-~~~l 134 (383)
.++.|+||+|||+++.++|... |.++..|+. .++...+ .|++
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl--Ems~~ql~~Rll 94 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL--EMSAEQLALRAL 94 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES--SSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC--CCCHHHHHHHHH
Confidence 4467999999999999888764 677766665 4566553 4443
No 441
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.74 E-value=0.43 Score=39.12 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.0
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 356889999999999998865
No 442
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=80.63 E-value=0.38 Score=39.76 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=18.1
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
-++++|++|+|||++++.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 356889999999999998865
No 443
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=80.63 E-value=0.44 Score=46.18 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=24.9
Q ss_pred CCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCS 122 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~ 122 (383)
.++.|+||+|||+++.++|... |.++..|++-
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 4568999999999998887655 6677766654
No 444
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=80.58 E-value=1.5 Score=36.92 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=27.4
Q ss_pred CCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHH
Q psy6129 95 GPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYR 128 (383)
Q Consensus 95 Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~ 128 (383)
+-.|+|||+++..||..+ |+.+..++|+.+-+..
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 457899999999888776 6889999998765443
No 445
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=80.55 E-value=0.38 Score=40.33 Aligned_cols=21 Identities=19% Similarity=0.080 Sum_probs=18.4
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
-+++.|++|+|||++++.+..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999876
No 446
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=80.46 E-value=0.6 Score=47.25 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=22.5
Q ss_pred CCCCCcCCCCCCccHHHHH-HHHHh---C---CcEEEEeCCC
Q psy6129 89 MGGSPCGPAGTGKTETVKD-MGKTL---A---KYVVVFNCSD 123 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~-la~~l---g---~~~~~~~c~~ 123 (383)
.+.++.|+||||||+++-+ ++..+ | ..+..+.++.
T Consensus 23 ~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~ 64 (647)
T 3lfu_A 23 SNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTN 64 (647)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccH
Confidence 3445679999999998754 55544 2 2355665544
No 447
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.45 E-value=0.28 Score=45.11 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=21.3
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
..+.-..++||+|+|||++++.++..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 344456689999999999999887654
No 448
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=80.45 E-value=1 Score=42.53 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=31.5
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCCHHHHHHHHhh
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMDYRGLGRIYKG 136 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~~~~l~~~l~g 136 (383)
+...++.||+|+|||++++.++..+ |..++++.- .-++..+.+.+.|
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~gg 84 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP--EREYKEMCRKLGG 84 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES--SCCSHHHHHHTTC
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC--CcCHHHHHHHcCC
Confidence 3445678999999999999877543 566666654 4445555555433
No 449
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=80.42 E-value=0.44 Score=39.64 Aligned_cols=21 Identities=19% Similarity=0.090 Sum_probs=18.1
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999998875
No 450
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=80.31 E-value=0.45 Score=39.22 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=17.6
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
++++|++|+|||+++..+..
T Consensus 21 i~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 46899999999999998874
No 451
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=80.23 E-value=0.46 Score=39.63 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.2
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 456899999999999998875
No 452
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=80.21 E-value=0.47 Score=39.54 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=17.8
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
-++++|++|+|||+++..+..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999988765
No 453
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=80.18 E-value=0.42 Score=39.10 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=16.7
Q ss_pred CCCcCCCCCCccHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMG 109 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la 109 (383)
+++.|++|+|||+++..+.
T Consensus 12 i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEECCTTSCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4678999999999998875
No 454
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=80.05 E-value=0.69 Score=47.95 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
...+++|..|.. -..+.++++.|++|+|||++.|.+-+.+
T Consensus 156 aiA~~Ay~~m~~-~~~nQsIiiSGESGAGKTe~tK~im~yl 195 (783)
T 4db1_A 156 SISDNAYQYMLT-DRENQSILITGESGAGKTVNTKRVIQYF 195 (783)
T ss_dssp HHHHHHHHHHHH-HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hCCCceEEEeCCCCCCCchHHHHHHHhh
Confidence 357788877764 2456778889999999999988665544
No 455
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=80.01 E-value=0.46 Score=39.07 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=17.8
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 356789999999999988864
No 456
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=79.97 E-value=0.47 Score=38.95 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=18.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
..++++|++|+|||+++..+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3456889999999999988774
No 457
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=79.94 E-value=0.63 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.6
Q ss_pred CCCCcCCCCCCccHHHHHHHHHhC
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTLA 113 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~lg 113 (383)
...+.||.|+|||++++.++..+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCC
Confidence 345899999999999999998773
No 458
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=79.91 E-value=0.17 Score=43.02 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=17.6
Q ss_pred CCCCCcCCCCCCccHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMG 109 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la 109 (383)
.-..++|++|+|||++++.++
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 345689999999999998865
No 459
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=79.90 E-value=0.36 Score=40.00 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=17.1
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
+++.|++|+|||+++..+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 35789999999999998764
No 460
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=79.80 E-value=0.47 Score=39.86 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=17.5
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
++++|++|+|||+++..+..
T Consensus 17 i~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 46789999999999998874
No 461
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=79.79 E-value=0.36 Score=40.26 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=17.2
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
++++|++|+|||+++..+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 26 IALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 46789999999999998763
No 462
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.70 E-value=0.85 Score=42.64 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=13.4
Q ss_pred ccccEEEECCCCCCC
Q psy6129 369 VRHGIMTLGPTGAVT 383 (383)
Q Consensus 369 ~~~gviLvG~~GsGK 383 (383)
..++++|+|||||||
T Consensus 116 ~~~~vLl~GppGtGK 130 (357)
T 3d8b_A 116 PPKGILLFGPPGTGK 130 (357)
T ss_dssp CCSEEEEESSTTSSH
T ss_pred CCceEEEECCCCCCH
Confidence 467899999999998
No 463
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=79.62 E-value=0.45 Score=43.45 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=19.0
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
-..+.||+|+|||++++.++...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 34578999999999999987644
No 464
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.60 E-value=0.49 Score=39.64 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=18.9
Q ss_pred CCCCCcCCCCCCccHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
..++++|++|+|||++++.+..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3467899999999999998876
No 465
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=79.50 E-value=0.5 Score=39.29 Aligned_cols=22 Identities=18% Similarity=0.056 Sum_probs=18.6
Q ss_pred CCCCCcCCCCCCccHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
..++++|++|+|||+++..+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3457899999999999998864
No 466
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=79.49 E-value=0.5 Score=39.80 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.6
Q ss_pred CCCCcCCCCCCccHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
-++++|++|+|||+++..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4568899999999999998753
No 467
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=79.49 E-value=0.71 Score=48.27 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
...+++|..+.. -..+.++++.|++|+||||+.|.+-+.+
T Consensus 154 aiA~~Ay~~m~~-~~~nQsIiiSGESGAGKTe~tK~i~~yl 193 (837)
T 1kk8_A 154 SVADNAYQNMVT-DRENQSCLITGESGAGKTENTKKVIMYL 193 (837)
T ss_dssp HHHHHHHHHHHH-HTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCcEEEEeCCCCCCchhhHHHHHHHH
Confidence 357778877654 2456778889999999999988655544
No 468
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=79.39 E-value=0.5 Score=39.36 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=18.8
Q ss_pred CCCCCcCCCCCCccHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
..++++|++|+|||+++..+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4456899999999999999875
No 469
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=79.38 E-value=0.75 Score=47.84 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
...+++|..+..- ..+.++++.|++|+|||++.|.+-+.|
T Consensus 141 aiA~~Ay~~m~~~-~~nQsIiisGESGAGKTe~tK~i~~yl 180 (795)
T 1w7j_A 141 AVAEEAYKQMARD-ERNQSIIVSGESGAGKTVSAKYAMRYF 180 (795)
T ss_dssp HHHHHHHHHHHHH-TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhc-CCCeEEEEeCCCCCCcchHHHHHHHHH
Confidence 3577788776542 456778889999999999988765544
No 470
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=79.38 E-value=0.37 Score=39.51 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.3
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.+++.|++|+|||+++..+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999998876
No 471
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=79.33 E-value=1 Score=44.22 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=13.8
Q ss_pred hccccEEEECCCCCCC
Q psy6129 368 RVRHGIMTLGPTGAVT 383 (383)
Q Consensus 368 ~~~~gviLvG~~GsGK 383 (383)
....+|+|+|||||||
T Consensus 236 ~~~~~vLL~GppGtGK 251 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGK 251 (489)
T ss_dssp CCCCEEEEECSTTSSH
T ss_pred CCCCcEEEECcCCCCH
Confidence 3457899999999998
No 472
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=79.24 E-value=0.72 Score=47.71 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 73 LTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 73 ~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
..+++|..+.. -..+.++++.|++|+|||++.|.+-+.+
T Consensus 158 iA~~Ay~~m~~-~~~nQsIiisGESGAGKTe~tK~i~~yl 196 (770)
T 1w9i_A 158 ISDVAYRSMLD-DRQNQSLLITGESGAGKTENTKKVIQYL 196 (770)
T ss_dssp HHHHHHHHHHH-HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hcCCcEEEEecCCCCcchHHHHHHHHHH
Confidence 56777777654 2456677889999999999988654443
No 473
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=79.08 E-value=0.52 Score=39.31 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=17.9
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 356789999999999998875
No 474
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=79.08 E-value=0.46 Score=39.74 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=18.7
Q ss_pred CCCCCcCCCCCCccHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.-++++|++|+|||+++..+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3456899999999999999875
No 475
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=79.07 E-value=0.59 Score=43.75 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.3
Q ss_pred ccccEEEECCCCCCC
Q psy6129 369 VRHGIMTLGPTGAVT 383 (383)
Q Consensus 369 ~~~gviLvG~~GsGK 383 (383)
..+|++|+|||||||
T Consensus 83 ~~~~iLL~GppGtGK 97 (355)
T 2qp9_X 83 PTSGILLYGPPGTGK 97 (355)
T ss_dssp CCCCEEEECSTTSCH
T ss_pred CCceEEEECCCCCcH
Confidence 357899999999998
No 476
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=79.04 E-value=0.52 Score=39.64 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=18.4
Q ss_pred CCCCCcCCCCCCccHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~ 110 (383)
..++++|++|+|||+++..+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3456899999999999998864
No 477
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=78.95 E-value=2 Score=44.62 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=30.4
Q ss_pred eechhhHHHHHHHHHHHHccC--CCCCcCCCCCCccHHHH
Q psy6129 69 VITPLTDRCYITLAQALTMSM--GGSPCGPAGTGKTETVK 106 (383)
Q Consensus 69 v~Tp~t~r~~~~l~~al~~~~--~~~l~Gp~GtGKT~~i~ 106 (383)
-+||.-.+++..+...+.... ..++.||+|+|||..+-
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlval 407 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQ 407 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHH
Confidence 468888888888887776654 56789999999998764
No 478
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=78.92 E-value=0.53 Score=39.13 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=18.7
Q ss_pred CCCCcCCCCCCccHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
-++++|++|+|||+++..+...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999998753
No 479
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=78.88 E-value=0.43 Score=42.71 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.4
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
+.+.|++|+|||++++.+..
T Consensus 6 i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 6 VALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEECSSSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999864
No 480
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=78.84 E-value=0.64 Score=43.18 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.4
Q ss_pred CCcCCCCCCccHHHHHHHHHhCC
Q psy6129 92 SPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 92 ~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
+++||.|+|||+++.++...+..
T Consensus 27 ~i~G~NGsGKS~lleAi~~~l~~ 49 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAILVGLYW 49 (339)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 57899999999999998776643
No 481
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=78.80 E-value=0.79 Score=49.11 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 72 p~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
-..+++|..|..- ..+..+++.|++|+||||+.|.+-+.|
T Consensus 129 aiA~~AY~~M~~~-~~nQsIiiSGESGAGKTestK~im~yL 168 (1052)
T 4anj_A 129 AIADKAFRDMKVL-KLSQSIIVSGESGAGKTENTKFVLRYL 168 (1052)
T ss_dssp HHHHHHHHHHHHH-TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCceEEEecCCCCCHHHHHHHHHHHH
Confidence 3567777777642 456778889999999999998766554
No 482
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=78.72 E-value=0.51 Score=41.21 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.8
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
-+.++|++|+|||+++..+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 356899999999999988764
No 483
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=78.71 E-value=0.54 Score=39.15 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.2
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
-++++|++|+|||++++.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 356789999999999999875
No 484
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=78.58 E-value=0.47 Score=43.62 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=21.4
Q ss_pred cCCCCCcCCCCCCccHHHHHHHHHhCCcE
Q psy6129 88 SMGGSPCGPAGTGKTETVKDMGKTLAKYV 116 (383)
Q Consensus 88 ~~~~~l~Gp~GtGKT~~i~~la~~lg~~~ 116 (383)
+.+.++.|++|+|||+++.++.+ .|..+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~l 174 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLF 174 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEE
Confidence 45566899999999999988765 45443
No 485
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=78.46 E-value=0.55 Score=39.21 Aligned_cols=23 Identities=22% Similarity=0.188 Sum_probs=19.1
Q ss_pred CCCCCcCCCCCCccHHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
..++++|++|+|||+++..+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 34568999999999999988753
No 486
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.43 E-value=0.49 Score=39.50 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=19.5
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.++++|++|+|||++++.+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 35689999999999999988654
No 487
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=78.19 E-value=0.53 Score=39.58 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=17.9
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 356889999999999998864
No 488
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=78.19 E-value=0.57 Score=39.83 Aligned_cols=22 Identities=18% Similarity=0.024 Sum_probs=18.7
Q ss_pred CCCCcCCCCCCccHHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
.++++|++|+|||+++..+...
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999998753
No 489
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=78.11 E-value=0.4 Score=39.56 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=8.3
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||+++..+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 356889999999999988763
No 490
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=78.10 E-value=0.5 Score=39.90 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=18.1
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
-++++|++|+|||+++..+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 356889999999999998875
No 491
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=78.09 E-value=0.72 Score=38.93 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=23.8
Q ss_pred chhhHHHHHHHHHHHHccCCCCCcCCCCCCccHHH-HHHHHHh
Q psy6129 71 TPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETV-KDMGKTL 112 (383)
Q Consensus 71 Tp~t~r~~~~l~~al~~~~~~~l~Gp~GtGKT~~i-~~la~~l 112 (383)
||.-.+++.. +..+...++.+|+|+|||.+. ..+...+
T Consensus 25 ~~~Q~~~i~~----~~~~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 25 TPIQAAALPL----ALEGKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CHHHHHHHHH----HHTTCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHH----HcCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 4544444433 334567788999999999874 3344443
No 492
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=78.05 E-value=0.44 Score=39.55 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=17.1
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
+++.|++|+|||+++..+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 26 VAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 46789999999999988754
No 493
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=78.02 E-value=0.45 Score=39.47 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=17.3
Q ss_pred CCCcCCCCCCccHHHHHHHH
Q psy6129 91 GSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~ 110 (383)
.+++|++|+|||++++.+..
T Consensus 19 i~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 56789999999999988764
No 494
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=78.01 E-value=0.71 Score=44.39 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.2
Q ss_pred CCCcCCCCCCccHHHHHHHHHhCC
Q psy6129 91 GSPCGPAGTGKTETVKDMGKTLAK 114 (383)
Q Consensus 91 ~~l~Gp~GtGKT~~i~~la~~lg~ 114 (383)
.+++||.|+|||+++.+++..++-
T Consensus 29 ~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHhhhcc
Confidence 458999999999999999998864
No 495
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=78.01 E-value=1.5 Score=38.85 Aligned_cols=33 Identities=30% Similarity=0.620 Sum_probs=27.5
Q ss_pred cCCCCCCccHHHHHHHHHh---CCcEEEEeCCCCCC
Q psy6129 94 CGPAGTGKTETVKDMGKTL---AKYVVVFNCSDQMD 126 (383)
Q Consensus 94 ~Gp~GtGKT~~i~~la~~l---g~~~~~~~c~~~~~ 126 (383)
.|..|+|||+++-+||..+ |+.+..+.|+.+.+
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~ 42 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD 42 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Confidence 4677999999999999877 67899999987654
No 496
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=77.97 E-value=0.51 Score=40.20 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=19.5
Q ss_pred CCCCCcCCCCCCccHHHHHHHHH
Q psy6129 89 MGGSPCGPAGTGKTETVKDMGKT 111 (383)
Q Consensus 89 ~~~~l~Gp~GtGKT~~i~~la~~ 111 (383)
..++++|++|+|||++++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999998763
No 497
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=77.87 E-value=0.59 Score=38.80 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=18.7
Q ss_pred CCCCcCCCCCCccHHHHHHHHHh
Q psy6129 90 GGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
.++++|++|+|||++++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999998776543
No 498
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=77.86 E-value=0.4 Score=48.22 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=21.8
Q ss_pred HccCCCCCcCCCCCCccHHHHHHHHHh
Q psy6129 86 TMSMGGSPCGPAGTGKTETVKDMGKTL 112 (383)
Q Consensus 86 ~~~~~~~l~Gp~GtGKT~~i~~la~~l 112 (383)
..+....++||+|+|||++++.++...
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445556789999999999999987754
No 499
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.84 E-value=0.53 Score=39.32 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=18.2
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
-++++|++|+|||+++..+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 356889999999999999876
No 500
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=77.78 E-value=0.52 Score=40.04 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=18.3
Q ss_pred CCCCcCCCCCCccHHHHHHHH
Q psy6129 90 GGSPCGPAGTGKTETVKDMGK 110 (383)
Q Consensus 90 ~~~l~Gp~GtGKT~~i~~la~ 110 (383)
.++++|++|+|||++++.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999998875
Done!