RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6129
(383 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 610 bits (1574), Expect = 0.0
Identities = 120/367 (32%), Positives = 180/367 (49%), Gaps = 8/367 (2%)
Query: 19 CRMNIKSVNDFEWLKQCRFYFKDD----LDKTWINITDVTFTYQNEYLGCTERLVITPLT 74
+ K W K +FY K+D L+ +I+ + Y+ EY+G ERL+ TPL
Sbjct: 572 KNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYIGIPERLIYTPLL 631
Query: 75 DRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIY 134
+ TL +L GG GPAGTGKTETVK G+ L + VVVFNC D DY+ L R+
Sbjct: 632 LIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLL 691
Query: 135 KGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGI 194
G+ Q G+WGCFDEFNR++ VLS + + + + K + + P +
Sbjct: 692 VGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITL-LEEETPLSPHTAV 750
Query: 195 FITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYK 254
FIT+NPGY GR ELPENLK FR +M P I + L GF ++ +LA K +
Sbjct: 751 FITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLE 810
Query: 255 LCEEQLTKQVHYDFGLRNILSVLRSLGAAKRVNSRDTESTIVMRVLRDMNLSKLIDEDEP 314
L + + HY FGLR + VLR+ V+ L+ + L L D DE
Sbjct: 811 LLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFG--EGEKTVVESLKRVILPSLGDTDEL 868
Query: 315 LFISLVADLFPNQALEKTAYPALEGAIQEQCEAAGLIFHPPWVLKLIQLYETQRVRHGIM 374
+F ++ +F + A+ +++ + +G ++ K +Q Y Q+ + ++
Sbjct: 869 VFKDELSKIFDSAGTPL-NSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALI 927
Query: 375 TLGPTGA 381
+G G
Sbjct: 928 LVGKAGC 934
Score = 94.1 bits (234), Expect = 7e-21
Identities = 57/362 (15%), Positives = 119/362 (32%), Gaps = 58/362 (16%)
Query: 14 FLDLECRMNIKSVNDFEWLKQCRFYFKDDLDKTWINITDV--TFTYQNEYLGCTERLVIT 71
++ + + ++D+ + ++ + + + + + + ++ T
Sbjct: 1197 TINTYFGHDSQELSDYS------TIVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPT 1250
Query: 72 PLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVF-NCSDQ------ 124
T + L G CGP G+GKT + + + + Y VV N S
Sbjct: 1251 IDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHI 1310
Query: 125 -------MDY--RGLGRIYKGLAQSGSWGCF-DEFNRIELPVLSVAAQQVAVVLAAKKEK 174
+Y G + + F DE N +L +Q V + L EK
Sbjct: 1311 LSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYG--SQNVVLFLRQLMEK 1368
Query: 175 KKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRV-- 232
+ + + + + + P GR + E + + P + + ++
Sbjct: 1369 QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYE 1428
Query: 233 ---------KLASCGFLENITLARKFYTLYKLCEEQLT--KQVHYDFGLRNILSVLRSLG 281
+ E A LY C+ + + Q HY F R + ++R +
Sbjct: 1429 IYYKAIFKLVPEFRSYTEPFARA--SVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVY 1486
Query: 282 AAKRVNSRDTESTIV-------MRVLRDMNLSKLID-EDEPLFISLVADL----FPNQAL 329
A R T +++ R+ D +L+ +++ F L+ + PNQ L
Sbjct: 1487 TAINTGPRQTLRSLIRLWAYEAWRIFAD----RLVGVKEKNSFEQLLYETVDKYLPNQDL 1542
Query: 330 EK 331
Sbjct: 1543 GN 1544
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 587 bits (1514), Expect = 0.0
Identities = 167/384 (43%), Positives = 225/384 (58%), Gaps = 24/384 (6%)
Query: 22 NIKSVNDFEWLKQCRFYFKDD----LDKTWINITDVTFTYQNEYLGCTERLVITPLTDRC 77
N+ DF+WL R+Y+ L K I++ + TF Y EYLG ERLV TPLTDRC
Sbjct: 534 NLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTPLTDRC 593
Query: 78 YITLAQALTMSMGGSPCGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGL 137
Y+TL QAL MGG+P GPAGTGKTETVK +G L ++V+VF C + D + + RI+ GL
Sbjct: 594 YLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGL 653
Query: 138 AQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFIT 197
Q G+WGCFDEFNR+E +LS +QQ+ + A KE K G +I + + GIF+T
Sbjct: 654 CQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVT 713
Query: 198 MNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCE 257
MNPGYAGR LP+NLK FR++AM+ PDR++I +V L S GF LA K L+KLC+
Sbjct: 714 MNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQ 773
Query: 258 EQLTKQVHYDFGLRNILSVLRSLGAAKR--------------------VNSRDTESTIVM 297
EQL+ Q HYDFGLR + SVL S G KR E +++
Sbjct: 774 EQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLL 833
Query: 298 RVLRDMNLSKLIDEDEPLFISLVADLFPNQALEKTAYPALEGAIQEQCEAAGLIFHPPWV 357
+ D + KL+ +D PL SL+ D+FP L+ L IQE + L+ WV
Sbjct: 834 NSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWV 893
Query: 358 LKLIQLYETQRVRHGIMTLGPTGA 381
K++QL++ + HG+M +GP+G
Sbjct: 894 EKILQLHQILNINHGVMMVGPSGG 917
Score = 64.9 bits (158), Expect = 2e-11
Identities = 56/336 (16%), Positives = 105/336 (31%), Gaps = 64/336 (19%)
Query: 37 FYFKDDLDKTWINITDVTFTYQNEYLGCTERLVITPLTD--RCYITLAQALTMSMGGSPC 94
+ D D W + + + E V+ P D R L L+ C
Sbjct: 1252 YSVSID-DANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILC 1310
Query: 95 GPAGTGKTETVKDMGKTLAKYVVVF-NCSDQ-------------MDYR--GLGRIYKGLA 138
GP G+GKT T+ + + VV N S +Y+ G
Sbjct: 1311 GPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPT 1370
Query: 139 QSGSWGCF--DEFNRIELPVLSVAAQQVAVVLAAKKE-------KKKSFVFTDGDSIEMC 189
Q G W DE N Q+V + E +++ ++
Sbjct: 1371 QLGKWLVVFCDEINLPSTDKYG--TQRVITFIRQMVEKGGFWRTSDHTWI-----KLDKI 1423
Query: 190 PEFGIFIT--MNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRV-KLASCGFLENITLA 246
F+ P AGR +L + + P + ++ + ++ +
Sbjct: 1424 ----QFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNL 1479
Query: 247 RKF--------YTLYKLCEEQL--TKQVHYDFGLRNILSVLRSLGAAKRVNSRDTESTIV 296
R F Y +++ Q HY + R + R+L A + T +V
Sbjct: 1480 RSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLV 1539
Query: 297 -------MRVLRDMNLSKLID-EDEPLFISLVADLF 324
+R+ +D +L++ E++ + ++
Sbjct: 1540 RLWAHEALRLFQD----RLVETEEKEWTDKKIDEVA 1571
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 4e-08
Identities = 65/450 (14%), Positives = 140/450 (31%), Gaps = 132/450 (29%)
Query: 4 PKEVQWLTRWFLDLECRMNI---------KSV------NDFEWLKQCRFYFKDDLDKTWI 48
+ L + L+L N+ K+ ++ QC+ FK W+
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK--VQCKMDFK----IFWL 187
Query: 49 NITDVTFTYQNEYLGCTERLVITPLTDRCYITLAQALTMSMGGSPCGPAGTGKTETVKDM 108
N+ + + V+ L Y + T S + +++
Sbjct: 188 NLKNC----------NSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKL---RIHSIQAE 233
Query: 109 GKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFN---RIELPVLSVAAQQVA 165
+ L K NC + + + ++ FN +I +L+ +QV
Sbjct: 234 LRRLLKSKPYENCLLVLL-----NVQ-------NAKAWNAFNLSCKI---LLTTRFKQVT 278
Query: 166 VVLAAKKEKKKSFV-----FTDGDSIEMCPEFGIFITMNPGYAGRKELP-ENLKIQFRTV 219
L+A S T + + ++ P ++LP E L R +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSL---LLKYLDCRP-----QDLPREVLTTNPRRL 330
Query: 220 AMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLT----KQVHYDFGL----R 271
++ + + IR LA+ +++ K T+ + L +++ +
Sbjct: 331 SI-IAES---IRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 272 NI-LSVLRSLGAAKRVNSRDTESTIVMRVLRDMNLSKLIDEDEP--------LFISLVAD 322
+I +L + D + VM V+ ++ L+++ +++ L
Sbjct: 386 HIPTILLSLIWF-------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 323 LFPNQALEKT---AYPALEGAIQEQCEAAGLIFHPPWV-----------LKLIQLYET-- 366
L AL ++ Y + + PP++ LK I+ E
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDD-------LIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 367 -------------QRVRHGIMTLGPTGAVT 383
Q++RH +G++
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Score = 35.2 bits (80), Expect = 0.036
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 29/110 (26%)
Query: 267 DFGLRNILSVLRSLGAAKRVNSRDTESTIVMRVLRDMNLSKLIDEDEPLFISL------V 320
+F +++ + +S+ + + ++ V LR LF +L +
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-------------LFWTLLSKQEEM 78
Query: 321 ADLFPNQALEKTAYPALEGAIQEQCEAAGLIFHPPWVLKLIQLYETQRVR 370
F + L Y L I+ + ++ ++Y QR R
Sbjct: 79 VQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMT---------RMYIEQRDR 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 2e-05
Identities = 64/408 (15%), Positives = 110/408 (26%), Gaps = 161/408 (39%)
Query: 35 CRFYFKDDLD-KTWINITDVTFTYQNEYLGCTERLVITPLTDRCYITLAQALTMSMGGSP 93
F L+ W+ T +YL + PL I + Q
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPD--KDYLLSIP--ISCPL-----IGVIQ---------- 245
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVV-----FNCSDQMDY-RGLGRIYKGL------AQSG 141
LA YVV F + Y +G +GL A++
Sbjct: 246 ------------------LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 142 SWGCFDEFNRIELPVLS------VAAQQVA--VVLAAKKEKKKSFVFTDGDSIE-----M 188
SW + F ++ V + L + DS+E
Sbjct: 288 SW---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE---------DSLENNEGVP 335
Query: 189 CPEFGI----------FIT-MNPGYAGRKELPENLKIQFRTVAMMVPDRQIIIRVKLASC 237
P I ++ N LP +++ ++++ + +++
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTN------SHLPAGKQVE---ISLVNGAKNLVV------S 380
Query: 238 GFLENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLGAAKRVN-SRDTES--- 293
G + +LY L LR A ++ SR S
Sbjct: 381 GPPQ---------SLYGLN------------------LTLRKAKAPSGLDQSRIPFSERK 413
Query: 294 -TIVMRVLRDMNL---SKLIDEDEPLFISLVADL------FPNQALEKTAYPALEGA-IQ 342
R L + S L+ L + DL F + ++ Y +G+ ++
Sbjct: 414 LKFSNRFLP-VASPFHSHLLVPASDL---INKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 343 EQCEA-----AGLIFHPP--WVLKLIQLYETQRVRHGIMTLGPTGAVT 383
+ I P W Q T H I+ GP G +
Sbjct: 470 VLSGSISERIVDCIIRLPVKWE-TTTQFKAT----H-ILDFGP-GGAS 510
Score = 34.3 bits (78), Expect = 0.086
Identities = 32/233 (13%), Positives = 55/233 (23%), Gaps = 86/233 (36%)
Query: 4 PKEVQWLTRWFLDLECRMNIKSVNDFEWLKQCRFYFKDDLDKTWINITDVTFTYQNEYLG 63
P + R N ++ FE + + + + + T TF + L
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAM-IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 64 CTERLVITPLTDRCYITLAQ-AL-TMSMGGSPCGPAGTGKTETVKDMGKTLAKYVV---- 117
T+ Q AL M A E +K G A
Sbjct: 1728 ATQ--------------FTQPALTLMEK-------A---AFEDLKSKGLIPADATFAGHS 1763
Query: 118 ------------VFNCSDQMD---YRGL-----------------------GRIYKGLAQ 139
V + ++ YRG+ GR+ +Q
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 140 SGSWGCFDEFNRIELPVLSVA-----AQQVAV------------VLAAKKEKK 175
+ + ++ + QQ VL K +K
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 35.0 bits (80), Expect = 0.036
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 94 CGPAGTGKTETVKDMGKTLAK------YVVVFNCSDQMDYRGLGRIYKGLAQSGSW 143
G GTGKT VK + L K V N R+ L +S
Sbjct: 51 YGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT---RQIDTPYRVLADLLESLDV 103
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 32.6 bits (75), Expect = 0.15
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 94 CGPAGTGKTETVKDMGKTL-----AKYVVVFNCSDQMDYRGL----GRIYKGLAQSGSWG 144
GP GTGKT T + + L + N SD+ RG+ +I K A++ G
Sbjct: 44 SGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE---RGIDVVRHKI-KEFARTAPIG 99
Query: 145 C 145
Sbjct: 100 G 100
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 32.5 bits (73), Expect = 0.22
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 94 CGPAGTGKTETVKDMGKTLAKY----VVVFNCSDQMDYRGLGRIYKGLAQSGSW 143
G GTGKT T++ + + V N YR I +A+S +
Sbjct: 50 LGRPGTGKTVTLRKLWELYKDKTTARFVYING---FIYRNFTAIIGEIARSLNI 100
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 32.3 bits (74), Expect = 0.23
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 94 CGPAGTGKTETVKDM-----GKTLAKYVVVFNCSDQMDYRGL 130
GP GTGKT T + G+ + N SD+ RG+
Sbjct: 44 SGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE---RGI 82
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 32.3 bits (74), Expect = 0.25
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 94 CGPAGTGKTETVKDM-----GKTLAKYVVVFNCSD 123
GP G GKT + G+ + N SD
Sbjct: 52 AGPPGVGKTTAALALARELFGENWRHNFLELNASD 86
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 31.0 bits (70), Expect = 0.62
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVV-FNCSDQMDYRGLGRIY---KGLAQSGS 142
GP G GKT + + L Y ++ N SD R + K + S
Sbjct: 83 YGPPGIGKTTAAHLVAQEL-GYDILEQNASDV---RSKTLLNAGVKNALDNMS 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 30.9 bits (69), Expect = 0.64
Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 16/72 (22%)
Query: 94 CGPAGTGKTETVKDMGKTLAKY-----------VVVFNC-----SDQMDYRGLGRIYKGL 137
G GTGKT K + + + NC + Q L G
Sbjct: 51 LGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGF 110
Query: 138 AQSGSWGCFDEF 149
+ E+
Sbjct: 111 SVPKHGINLGEY 122
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 30.5 bits (69), Expect = 0.94
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 95 GPAGTGKTETVKDMGKTLAKYVVVFNCSD 123
GP GTGKT + + + + N +
Sbjct: 245 GPPGTGKTLIARAVANETGAFFFLINGPE 273
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation,
transcription; 1.40A {Drosophila melanogaster}
Length = 66
Score = 27.7 bits (61), Expect = 1.4
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 67 RLVITPLTDRCYITLAQALTMSMGGSPCGP 96
RL+I+ L A L+M + C P
Sbjct: 21 RLMISQLMYDGLEKFAMELSMLVKADQCAP 50
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 29.5 bits (65), Expect = 1.6
Identities = 7/73 (9%), Positives = 20/73 (27%), Gaps = 13/73 (17%)
Query: 78 YITLAQALTMSMGGSP--CGPAGTGKTETVKDMGKTLAKY----------VVVFNCSDQM 125
++ + +L S + K + V D+ L + + +
Sbjct: 33 FLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92
Query: 126 D-YRGLGRIYKGL 137
+I+ +
Sbjct: 93 GMDALYEKIWFAI 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 28.1 bits (62), Expect = 3.3
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 95 GPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIY 134
G G GKT VK + + L K + F + D R
Sbjct: 7 GEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTG 46
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 28.3 bits (62), Expect = 3.9
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIE 153
G +G GKT + K +V+ + D +R Y L Q E+ +
Sbjct: 38 GGQSGAGKTTIHRIKQKEFQGNIVIID-GD--SFRSQHPHYLELQQEYGKD-SVEYTKDF 93
Query: 154 LPVLSVAAQQVAVVLAAKKEKKKSFVF 180
A + V ++ + +
Sbjct: 94 ------AGKMVESLVTKLSSLGYNLLI 114
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like
helicases, viral RNA detection, LGP2/dsRNA complex,
ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB:
2w4r_A 2rqa_A
Length = 145
Score = 27.4 bits (60), Expect = 5.0
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 143 WGCFDEFNRIELPVLSVAAQQVAVV---LAAKKEKKKSFVFTDGDSIEMCPE 191
WG + ++LPVL V + + + AKK + F D D ++ C E
Sbjct: 79 WGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVPDFDFLQHCAE 130
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 28.2 bits (63), Expect = 5.4
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 94 CGPAGTGKTETVKDM-----GKTLAKYVVVFNCSDQMDYRGL 130
GP GTGKT T+ + GK + V+ N SD RG+
Sbjct: 52 YGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD---RGI 90
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 27.4 bits (61), Expect = 6.1
Identities = 10/86 (11%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIE 153
G G+GK+ ++ + + D DYR + + ++ + +
Sbjct: 8 IGCPGSGKSTWAREFIAKNPGFYNI--NRD--DYR------QSIMAHEERD-EYKYTKKK 56
Query: 154 LPVLSVAAQQVAVVLAAKKEKKKSFV 179
+++ A + + K +
Sbjct: 57 EGIVTGMQFDTAKSILYGGDSVKGVI 82
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative
splicing, antiviral defense, ATP- binding, hydrolase,
immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Length = 145
Score = 27.0 bits (59), Expect = 6.4
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 126 DYRGLGRIYKGLAQSGS-WGCFDEFNRIELPVLSVAAQQVAVV-----LAAKKEKKKSFV 179
+ +I+ WG ++ E+PV+ + + V + K K F
Sbjct: 75 SFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFE 134
Query: 180 FTDGDSIEMC 189
D EM
Sbjct: 135 KIPFDPAEMS 144
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR,
ILF3, ILF2, template-free nucleotidyltransferase fold;
HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A*
4atb_A*
Length = 364
Score = 27.4 bits (60), Expect = 7.7
Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 19/125 (15%)
Query: 187 EMCPEFGIFITMNPGYAGRKELPENLKIQFR------TVAMMVPDRQIIIRVKLASCGFL 240
+ + + + P L + R + M+ + I
Sbjct: 91 HNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSS------- 143
Query: 241 ENITLARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLGAAK--RVNSRDTESTIVMR 298
+ T+ T+ + L ++H D + + S L ++ A+ N+ + +++R
Sbjct: 144 -DATVKILITTVPPNLRK-LDPELHLDIKV--LQSALAAIRHARWFEENASQSTVKVLIR 199
Query: 299 VLRDM 303
+L+D+
Sbjct: 200 LLKDL 204
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 27.7 bits (61), Expect = 7.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 95 GPAGTGKTETVKDMGKTLAK 114
GPAGTG T K + + L
Sbjct: 52 GPAGTGATTLTKFIIEALIS 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 27.5 bits (62), Expect = 7.9
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM 125
GP G GKTE + + LA+ +F + M
Sbjct: 527 LGPTGVGKTE----LARALAES--IFGDEESM 552
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 27.3 bits (61), Expect = 8.3
Identities = 13/75 (17%), Positives = 30/75 (40%)
Query: 13 WFLDLECRMNIKSVNDFEWLKQCRFYFKDDLDKTWINITDVTFTYQNEYLGCTERLVITP 72
+ D +MN+K D +++ YF + IN+ F + +E++ +
Sbjct: 78 YIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERM 137
Query: 73 LTDRCYITLAQALTM 87
L + T+++
Sbjct: 138 LDIAEFSTISRVKRC 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.421
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,004,301
Number of extensions: 365422
Number of successful extensions: 812
Number of sequences better than 10.0: 1
Number of HSP's gapped: 798
Number of HSP's successfully gapped: 40
Length of query: 383
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 288
Effective length of database: 4,049,298
Effective search space: 1166197824
Effective search space used: 1166197824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)