RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6129
(383 letters)
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 32.2 bits (72), Expect = 0.088
Identities = 13/142 (9%), Positives = 27/142 (19%), Gaps = 28/142 (19%)
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIE 153
G G+GKT + + V+V + D F +
Sbjct: 38 GGQPGSGKTSLRSAIFEETQGNVIVIDN-------------------------DTFKQQH 72
Query: 154 LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLK 213
+ V+ + + + L+
Sbjct: 73 PNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQ 132
Query: 214 IQFRTVAMMVPD---RQIIIRV 232
+ M V +
Sbjct: 133 AKGYETKMYVMAVPKINSYLGT 154
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 31.9 bits (71), Expect = 0.094
Identities = 14/58 (24%), Positives = 19/58 (32%)
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNR 151
GP G GKT + L + V + L I + G DE +R
Sbjct: 41 FGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHR 98
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur
protein, N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 106
Score = 29.5 bits (66), Expect = 0.20
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 132 RIYKGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPE 191
IY+ ++ L + L KEK S F +C
Sbjct: 6 SIYRYNPDVDDAPRMQDY---TLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGS 62
Query: 192 FGIFITMNPGYAGRKELPE 210
G+ + G A +
Sbjct: 63 DGLNMNGKNGLACITPISA 81
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 30.0 bits (67), Expect = 0.44
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGR 132
GP +GKT + + + N LG
Sbjct: 160 KGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGV 198
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 29.0 bits (64), Expect = 1.1
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVV 118
GP G GKTE + + LAK
Sbjct: 55 IGPTGVGKTE----IARRLAKLANA 75
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/138 (15%), Positives = 35/138 (25%), Gaps = 8/138 (5%)
Query: 95 GPAGTGKTETVKDMGKTLA---KYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNR 151
GP G GKT + + L V F + G +R
Sbjct: 8 GPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLS----GTRGPLSR 63
Query: 152 IELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPEN 211
+ L + + + + G + + G+ EL
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVID-EIGKMELFSQ 122
Query: 212 LKIQFRTVAMMVPDRQII 229
L IQ + P I+
Sbjct: 123 LFIQAVRQTLSTPGTIIL 140
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 28.3 bits (62), Expect = 1.7
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 3/61 (4%)
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVVFNCSDQM---DYRGLGRIYKGLAQSGSWGCFDEFN 150
GP G GKTE + + K + + + G D
Sbjct: 55 IGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVE 114
Query: 151 R 151
+
Sbjct: 115 Q 115
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.8 bits (60), Expect = 2.2
Identities = 26/210 (12%), Positives = 62/210 (29%), Gaps = 16/210 (7%)
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIE 153
GP G GKT + + L ++ N SD L K + S + + N
Sbjct: 58 YGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEA 117
Query: 154 LPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGIFITMNPGYAGRKELPENLK 213
+ + +++ G + C + + + R
Sbjct: 118 QN---LNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILI--CNERNLPKMRPF 172
Query: 214 IQFRTVAMMVPDRQIIIRVKLASCGFLENITLARKFYTLYKLCEEQLTKQVHYDFG-LRN 272
+ I+ +L + E KL + + + G +R
Sbjct: 173 DRVCLDIQFRRPDANSIKSRLMTIAIREKF----------KLDPNVIDRLIQTTRGDIRQ 222
Query: 273 ILSVLRSLGAAKRVNSRDTESTIVMRVLRD 302
++++L ++ + + + + I ++
Sbjct: 223 VINLLSTISTTTKTINHENINEISKAWEKN 252
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 26.4 bits (57), Expect = 6.5
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 11/111 (9%)
Query: 95 GPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYKGLAQSGSWGCFDEFNRIEL 154
G GTGK+ V+ + L + V C + + + + ++L
Sbjct: 35 GDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPV--VDL 92
Query: 155 PVLSVAAQQVAVVLAAKKEKKKSFVFTDGD---------SIEMCPEFGIFI 196
P+ + V + + K F G I+ C I
Sbjct: 93 PLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHI 143
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.3 bits (56), Expect = 6.8
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 94 CGPAGTGKTETVKDMGKTLA-KYVVVFNCSDQMDYRGLGRIYKGLAQSGSWG 144
G GTGKT T++ + + K F + YR I +A+S +
Sbjct: 49 LGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIP 100
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 26.3 bits (56), Expect = 7.0
Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 34/237 (14%)
Query: 94 CGPAGTGKTETVKDMGKTLAKY---------VVVFNC----------SDQMDYRGLGRIY 134
G G GKT K K +++ N S + G
Sbjct: 52 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQV 111
Query: 135 KGLAQSGSWGCFDEFNRIELPVLSVAAQQVAVVLAAKKEKKKSFVFTDGDSIEMCPEFGI 194
+G + +E L V + +L++ + + E+ G+
Sbjct: 112 RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 171
Query: 195 FITMNPGYAGRKELPENLK---------IQFRTVAMMVPDRQIIIRVKLASCGFLENITL 245
A ++ I F+ R++ ++ + L +
Sbjct: 172 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW 231
Query: 246 ARKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRSLGAAKRVNSRDTESTIVMRVLRD 302
+ +L + + D R + L+ A + ++ ++R
Sbjct: 232 EPR---HLELISDVYGEDKGGDGSARRAIVALKM---ACEMAEAMGRDSLSEDLVRK 282
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 26.1 bits (56), Expect = 8.4
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 95 GPAGTGKTETVKDMGKTLAKYVVVFNCSDQM 125
GP +GKT + + + D+M
Sbjct: 47 GPPHSGKTALAAKIAEESNFPFIKICSPDKM 77
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 26.2 bits (57), Expect = 8.4
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 9/66 (13%)
Query: 95 GPAGTGKTETVKDMGKTLAKYVVVF--NCSDQMD-YRG-----LGRIYKGLAQSGSWGCF 146
G +GKT V +G+ L + + Y + I +
Sbjct: 130 GKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARA-MLQHRVIVI 188
Query: 147 DEFNRI 152
D +
Sbjct: 189 DSLKNV 194
>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum
vulgare), AMY1 isozyme [TaxId: 4513]}
Length = 347
Score = 26.1 bits (56), Expect = 8.8
Identities = 12/95 (12%), Positives = 22/95 (23%), Gaps = 8/95 (8%)
Query: 8 QWLTRWFLDLECRMNIKSVNDFEWLKQCRFYFKDDLDKTWINITDVTFTYQNE------Y 61
Q L W + + V DF + +L + +
Sbjct: 227 QNLVNWVDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTF 286
Query: 62 LGC--TERLVITPLTDRCYITLAQALTMSMGGSPC 94
+ T + A ++ G PC
Sbjct: 287 VDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIPC 321
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 25.9 bits (56), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 94 CGPAGTGKTETVKDMGKTLAKYVVVFNCSDQMDYRGLGRIYK 135
GP G GKTE + K L ++ F+ S+ M+ + R+
Sbjct: 58 AGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 99
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 24.7 bits (54), Expect = 9.8
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 273 ILSVLRSLGAAKRVNSRDTESTIVMRVLRDMNL 305
IL + G + V SR + L+ +L
Sbjct: 2 ILRFIACNGQTRAVQSRGDYQKTLAIALKKFSL 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.421
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,462,109
Number of extensions: 69386
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 23
Length of query: 383
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,213,086
Effective search space: 359073456
Effective search space used: 359073456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.0 bits)