BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy613
(545 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 286 bits (731), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 179/544 (32%), Positives = 276/544 (50%), Gaps = 24/544 (4%)
Query: 3 KLNSLEDIDTNTIAIIGIGGKFPGS-KNINDFWRKLENNEDAITEVPTSRWDWKAIYGDP 61
+L +E IAI+G +FPG + FW + DAI E P R W+ DP
Sbjct: 29 RLREVEHRAGEPIAIVGXACRFPGDVDSPESFWEFVSGGGDAIAEAPADR-GWEP---DP 84
Query: 62 HLESGKTKVKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSK 121
+ GG L A FDA FFGISP EA DPQ R+ +E +W ALE AG+ P
Sbjct: 85 -------DARLGGXLAAAGDFDAGFFGISPREALAXDPQQRIXLEISWEALERAGHDPVS 137
Query: 122 LSGSKTAIFAGVSTADYKDILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDT 181
L GS T +F GV T DY +EA + L + + RV+Y GP+ +DT
Sbjct: 138 LRGSATGVFTGVGTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLEGPAXTVDT 197
Query: 182 ACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENGRCMTFDQRA 241
ACSS L A++ A ESL C LALAGGV + +SP G L+ +GRC F + A
Sbjct: 198 ACSSGLTALHLAXESLRRDECGLALAGGVTVXSSPGAFTEFRSQGGLAADGRCKPFSKAA 257
Query: 242 NGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDV 301
+G+ +EG GV++L+ L A + + + RG+ N G S+ T+P+ AQ++++
Sbjct: 258 DGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRA 317
Query: 302 YRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKAN 361
A + ++Y+EAHGTGT+LGDPIEV+ L S + + PL +GSVK+N
Sbjct: 318 LENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAERD-PDDPLW-----IGSVKSN 371
Query: 362 IGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNN 421
IGH +AA+GV GV K +L L++ + P H P+ ++ D +V++ W +
Sbjct: 372 IGHTQAAAGVAGVXKAVLALRHGEXPRTLHFDEPSPQIEWDLGAVSVVSQARSWPAGER- 430
Query: 422 IPRRAXXXXXXXXXXXXXXIIEEYRKNIKTKYIKENTVLVRIIMLSAKTKKSLKEYVILL 481
PRRA I+EE + + + ++ + ++LS + +++ + L
Sbjct: 431 -PRRAGVSSFGISGTNAHVIVEEAPEADEPEPAPDSGPV--PLVLSGRDEQAXRAQAGRL 487
Query: 482 LEFIIKEKNNFSLCDLAYTLQVGREAMKYRLAIYVNSYEDLIKKLQDYLNKKITNGIYTN 541
+ + +E N SL D +TL R A ++R A+ V ++ + L+ + +I + T
Sbjct: 488 ADHLAREPRN-SLRDTGFTLATRRSAWEHR-AVVVGDRDEALAGLRAVADGRIADRTATG 545
Query: 542 FSKN 545
++
Sbjct: 546 QART 549
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 275 bits (703), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 162/523 (30%), Positives = 272/523 (52%), Gaps = 16/523 (3%)
Query: 9 DIDTNTIAIIGIGGKFPGSKNI-NDFWRKLENNEDAITEVPTSR-WDWKAIYGDPHLESG 66
+++++ IAI+ + + PG N W L + ++ PT R WD ++ G
Sbjct: 2 ELESDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPDNPG 61
Query: 67 KTKVKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSK 126
+ V GGFL DA FDA FFG+SP EA MDPQ RL +ET+W +E+AG P L G+
Sbjct: 62 TSYVDKGGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTA 121
Query: 127 TAIFAGVSTADY-KDILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSS 185
T +F GV+ Y +D +G S+ P + + R+SY GPS +DTACSS
Sbjct: 122 TGVFLGVAKFGYGEDTAAAEDVEGY--SVTGVAPAVASGRISYTMGLEGPSISVDTACSS 179
Query: 186 SLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENGRCMTFDQRANGYV 245
SL+A++ A+ESL +A+ GG ++A+P + + S+ L+ +GR F A+G+
Sbjct: 180 SLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGFG 239
Query: 246 RSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRA 305
SEGV ++LL+ L A + + + RG+ N G S+ ++P+ AQ++++
Sbjct: 240 FSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESC 299
Query: 306 NINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHL 365
+ P ++ +EAHGTGT LGDPIE N L + + + PL LGSVK+NIGH
Sbjct: 300 GLEPGDVDAVEAHGTGTALGDPIEANALLDTYGRDRDADR-PLW-----LGSVKSNIGHT 353
Query: 366 EAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNNIPRR 425
+AA+GV G++KV+L L+ ++P H++ P ++ + L+ W + + RR
Sbjct: 354 QAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDWSSGGVALLAGNQPWRRGERT--RR 411
Query: 426 AXXXXXXXXXXXXXXIIEEYRKNIKTKYIKENTVLVRIIMLSAKTKKSLKEYVILLLEFI 485
A I+EE + + + V ++ +SA++ +L+ + E +
Sbjct: 412 AAVSAFGISGTNAHVIVEEAPEREHRETTAHDGRPVPLV-VSARSTAALRAQAAQIAELL 470
Query: 486 IKEKNNFSLCDLAYTLQVGREAMKYRLAIYVNSYEDLIKKLQD 528
E+ + L + L R ++R A+ ++ E+ ++ L++
Sbjct: 471 --ERPDADLAGVGLGLATTRARHEHRAAVVASTREEAVRGLRE 511
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 211/384 (54%), Gaps = 26/384 (6%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ I G+ GK P S+N+ +FW L D +T+ RW +YG P SGK K
Sbjct: 6 VVIAGMSGKLPESENLQEFWDNLIGGVDMVTD-DDRRWK-AGLYGLPR-RSGKLK----- 57
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
D FDA+FFG+ P +A MDPQLRL +E T+ A+ D G P L G+ T ++ GVS
Sbjct: 58 ---DLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWVGVS 114
Query: 135 TADYKDILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAI 194
++ + L+ + S+ M+ANR+S+ F+F GPS +DTACSSSL+A+ A
Sbjct: 115 GSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNAY 174
Query: 195 ESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENGRCMTFDQRANGYVRSEGVGVIL 254
+++H C A+ GG+N+L PN ++ + G+LS G C FD NGY RSEGV +L
Sbjct: 175 QAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVL 234
Query: 255 L--KPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTI 312
L K L + G F+ G T P+ Q+QL+ +Y+ A + P +
Sbjct: 235 LTKKSLARRVYATILNAGTNTDGFKEQG-----VTFPSGDIQEQLIRSLYQSAGVAPESF 289
Query: 313 NYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
YIEAHGTGTK+GDP E+NG+ A L + PLL +GS K+N+GH E ASG+
Sbjct: 290 EYIEAHGTGTKVGDPQELNGITRA---LCATRQEPLL-----IGSTKSNMGHPEPASGLA 341
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPN 396
+ KVLL L++ N H PN
Sbjct: 342 ALAKVLLSLEHGLWAPNLHFHSPN 365
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 251 bits (642), Expect = 6e-67, Method: Composition-based stats.
Identities = 146/383 (38%), Positives = 209/383 (54%), Gaps = 24/383 (6%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ I G+ GK P S+N+ +FW L D +T RW +YG P GK K
Sbjct: 4 VVIAGMSGKLPESENLEEFWANLIGGVDMVT-ADDRRWK-AGLYGLPR-RMGKLK----- 55
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
D FDA+FFG+ +A MDPQLR+ +E T+ A+ D G P+ L G+ T ++ GVS
Sbjct: 56 ---DLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVGVS 112
Query: 135 TADYKDILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAI 194
++D + L+ + S+ M+ANR+S+ F+F GPS IDTACSSSL+A+ A
Sbjct: 113 SSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAY 172
Query: 195 ESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENGRCMTFDQRANGYVRSEGVGVIL 254
+++ C A+ GG+N+L PN ++ K G+LS++G C +FD GY R+E V +L
Sbjct: 173 QAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVAVL 232
Query: 255 LKPLKNAIIDNDHIYG-IFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTIN 313
L A +Y I G T P+ Q+QL+ +Y A +P ++
Sbjct: 233 LTKKSLA----RRVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLE 288
Query: 314 YIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIG 373
YIEAHGTGTK+GDP E+NG+ +A + PLL +GS K+N+GH E ASGV
Sbjct: 289 YIEAHGTGTKVGDPQELNGIVNALCATR---REPLL-----IGSTKSNMGHPEPASGVAA 340
Query: 374 VIKVLLMLKYKKIPGNPHLKIPN 396
+IKVLL L++ N H PN
Sbjct: 341 LIKVLLSLEHGVWAPNLHYHTPN 363
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 130/309 (42%), Gaps = 25/309 (8%)
Query: 111 ALEDAGYPPSKLSGSKTAIFAGVSTADYKDILNEAR---HKGLVKSLAEPF--PFMIAN- 164
ALEDAG P L + G + ++R +G + PF P MIAN
Sbjct: 82 ALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERG--PNRISPFFIPMMIANM 139
Query: 165 ---RVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA 221
++ + F GPS + TAC++ A+ A+ + L DL LAGG +P A
Sbjct: 140 ASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGA 199
Query: 222 SSKAGLLSENGR-----CMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNF 276
+ LS F +G+V EG GV++L+ ++A IY G
Sbjct: 200 FAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFG 259
Query: 277 ENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSA 336
+ H + P + + A I P + YI AHGT T +GD EV +K
Sbjct: 260 RSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRV 319
Query: 337 FSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPN 396
F + + L+ + S K+ IGHL A+G + I + L + IP +L+ P+
Sbjct: 320 FGD----HAKRLM-----VSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPD 370
Query: 397 SYLKLDNTP 405
L LD P
Sbjct: 371 PELDLDFVP 379
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/412 (23%), Positives = 166/412 (40%), Gaps = 40/412 (9%)
Query: 7 LEDIDTNTIAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESG 66
+ +++ + + G+G P + D+W+ L + I P +R+D +
Sbjct: 1 MANLEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIG--PITRFD-----------AS 47
Query: 67 KTKVKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSK 126
++GG + D FDA F + EA+ MD + + A+ DA ++L+ +
Sbjct: 48 DQACRFGGEVKD---FDATQF-LDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADE 103
Query: 127 TAIFAGVSTADYKDILNEARHKGLVK--SLAEPF--PFMIANRVSYL----FNFHGPSEV 178
+ G K +L + + L K S PF P MIAN S L GP+
Sbjct: 104 IGVLIGTGIGGLK-VLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNC 162
Query: 179 IDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENG-----R 233
TAC++ AI A + + GG +P + A LS
Sbjct: 163 TVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHA 222
Query: 234 CMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLA 293
FD+ +G+V EG G+++L+ L++A+ IYG G + + P+
Sbjct: 223 SRPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRG 282
Query: 294 QKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYC 353
+ + + + + P ++YI AHGT T D E +K A H Y
Sbjct: 283 ATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGN-HAY--------NI 333
Query: 354 GLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTP 405
+ S K+ GHL SG I + ++ + K+P +L+ P+ LD P
Sbjct: 334 AVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVP 385
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 96/415 (23%), Positives = 164/415 (39%), Gaps = 40/415 (9%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ I GIG P + W +L E I + + ++ G + ++
Sbjct: 23 VVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFN- 81
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGY-PPSKLSGSKTAIFAGV 133
+ NF +S ++ + M + I A++D+G+ P S+ T + G+
Sbjct: 82 --------EQNF--VSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGM 131
Query: 134 STADYKDILNEARHKGLVKSLAEPFPF--------MIANRVSYLFNFHGPSEVIDTACSS 185
++++E K + PF M A +VS + GP+ + TAC++
Sbjct: 132 GMIPL-EVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTT 190
Query: 186 SLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENG----RCMTFDQRA 241
A+ + + + D+ +AGG + SP S+A LS N C F +
Sbjct: 191 GAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTNSDPKLACRPFHPKR 250
Query: 242 NGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRG-NFENHGGHSSSPTSPNMLAQKQLLID 300
+G+V EG V++L+ ++A+ IY G GH ++P P + +
Sbjct: 251 DGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAP-DPEGEGALRCMAA 309
Query: 301 VYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKA 360
+ A + P I+YI AH T T LGD E +K F + H Y + S K
Sbjct: 310 ALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKD-HAY--------ALAVSSTKG 360
Query: 361 NIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCDW 415
GHL A+G + L Y+K+P +L L+ P K +W
Sbjct: 361 ATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPL----KAQEW 411
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 95/415 (22%), Positives = 163/415 (39%), Gaps = 40/415 (9%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ I GIG P + W +L E I + + ++ G + ++
Sbjct: 29 VVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFN- 87
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGY-PPSKLSGSKTAIFAGV 133
+ NF +S ++ + M + I A++D+G+ P S+ T + G+
Sbjct: 88 --------EQNF--VSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGM 137
Query: 134 STADYKDILNEARHKGLVKSLAEPFPF--------MIANRVSYLFNFHGPSEVIDTACSS 185
++++E K + PF M A +VS + GP+ + TA ++
Sbjct: 138 GMIPL-EVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTT 196
Query: 186 SLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENG----RCMTFDQRA 241
A+ + + + D+ +AGG + SP S+A LS N C F +
Sbjct: 197 GAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTNSDPKLACRPFHPKR 256
Query: 242 NGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRG-NFENHGGHSSSPTSPNMLAQKQLLID 300
+G+V EG V++L+ ++A+ IY G GH ++P P + +
Sbjct: 257 DGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAP-DPEGEGALRCMAA 315
Query: 301 VYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKA 360
+ A + P I+YI AH T T LGD E +K F + H Y + S K
Sbjct: 316 ALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKD-HAY--------ALAVSSTKG 366
Query: 361 NIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCDW 415
GHL A+G + L Y+K+P +L L+ P K +W
Sbjct: 367 ATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPL----KAQEW 417
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 95/406 (23%), Positives = 166/406 (40%), Gaps = 44/406 (10%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ + G+G P + W+ L + I+ + H ++ K+ G
Sbjct: 5 VVVTGLGMLSPVGNTVESTWKALLAGQSGISLID-------------HFDTSAYATKFAG 51
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
+ D +C D IS E MD ++ I A++D+G ++ + ++
Sbjct: 52 LVKDFNCEDI----ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAI--G 105
Query: 135 TADYKDILNEARHKGLVKSLAEPF-PF--------MIANRVSYLFNFHGPSEVIDTACSS 185
+ L E H L+ PF M+A ++ ++ GPS I TAC+S
Sbjct: 106 SGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTS 165
Query: 186 SLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLS---ENGRCMT--FDQR 240
+ I A + + D+ +AGG ++P A LS +N + + +D+
Sbjct: 166 GVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKE 225
Query: 241 ANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRG-NFENHGGHSSSPTSPNMLAQKQLLI 299
+G+V +G G+++L+ ++A IY G + H +SP N +
Sbjct: 226 RDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPE-NGAGAALAMA 284
Query: 300 DVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVK 359
+ R A I I Y+ AHGT T GD E +K+ F E + +L + S K
Sbjct: 285 NALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEA----ASRVL-----VSSTK 335
Query: 360 ANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTP 405
+ GHL A+G + I +L L+ + +P +L P+ LD P
Sbjct: 336 SMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVP 381
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/411 (22%), Positives = 164/411 (39%), Gaps = 44/411 (10%)
Query: 10 IDTNTIAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTK 69
+ + + G+G P + W+ L + I+ + H ++
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLID-------------HFDTSAYA 61
Query: 70 VKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAI 129
K+ G + D +C D IS E MD ++ I A++D+G ++ + ++
Sbjct: 62 TKFAGLVKDFNCEDI----ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGA 117
Query: 130 FAGVSTADYKDILNEARHKGLVKSLAEPF-PF--------MIANRVSYLFNFHGPSEVID 180
+ L E H L+ PF M+A ++ ++ GPS I
Sbjct: 118 AI--GSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIA 175
Query: 181 TACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLS---ENGRCMT- 236
TAC+S + I A + + D+ +AGG ++P A LS +N + +
Sbjct: 176 TACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASR 235
Query: 237 -FDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRG-NFENHGGHSSSPTSPNMLAQ 294
+D+ +G+V +G G+++L+ ++A IY G + H +SP N
Sbjct: 236 PWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPE-NGAGA 294
Query: 295 KQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCG 354
+ + R A I I Y+ AHGT T GD E +K+ F E
Sbjct: 295 ALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVL--------- 345
Query: 355 LGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTP 405
+ S K+ GHL A+G + I +L L+ + +P +L P+ LD P
Sbjct: 346 VSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVP 396
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 132/330 (40%), Gaps = 24/330 (7%)
Query: 89 ISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVSTADYKDILNEARHK 148
I EA MD + I A++DA ++ + + ++ G + E HK
Sbjct: 87 IDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGSGIGGMETF--EIAHK 144
Query: 149 GLVKS---LAEPF------PFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHL 199
L+ PF P M +VS GP+ TAC++ +I A + +
Sbjct: 145 QLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQR 204
Query: 200 KNCDLALAGGVNILASPNITIASSKAGLLSENG----RCMTFDQRANGYVRSEGVGVILL 255
+ D + GG + S + LS N C F + +G+V EG G++++
Sbjct: 205 GDADAMITGGTEAPITHMAIAGFSASRALSTNDDIETACRPFQEGRDGFVMGEGAGILVI 264
Query: 256 KPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYI 315
+ L++A +IY G + + +P + + A I P + Y+
Sbjct: 265 ESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYL 324
Query: 316 EAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVI 375
AHGT T +GD EV +K+ F E ++ K + S K+ GHL A+G I I
Sbjct: 325 NAHGTSTPVGDLNEVKAIKNTFGEAAKHLK---------VSSTKSMTGHLLGATGGIEAI 375
Query: 376 KVLLMLKYKKIPGNPHLKIPNSYLKLDNTP 405
L +K K+ H P+ LD P
Sbjct: 376 FSALSIKDSKVAPTIHAVTPDPECDLDIVP 405
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/411 (22%), Positives = 163/411 (39%), Gaps = 44/411 (10%)
Query: 10 IDTNTIAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTK 69
+ + + G+G P + W+ L + I+ + H ++
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLID-------------HFDTSAYA 61
Query: 70 VKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAI 129
K+ G + D +C D IS E MD ++ I A++D+G ++ + ++
Sbjct: 62 TKFAGLVKDFNCEDI----ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGA 117
Query: 130 FAGVSTADYKDILNEARHKGLVKSLAEPF-PF--------MIANRVSYLFNFHGPSEVID 180
+ L E H L+ PF M+A ++ ++ GPS I
Sbjct: 118 AI--GSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIA 175
Query: 181 TACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLS---ENGRCMT- 236
TAC+S + I A + + D+ +AGG ++P A LS +N + +
Sbjct: 176 TACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASR 235
Query: 237 -FDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRG-NFENHGGHSSSPTSPNMLAQ 294
+D+ +G+V +G G+++L+ ++A IY G + H +SP N
Sbjct: 236 PWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPE-NGAGA 294
Query: 295 KQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCG 354
+ + R A I I Y+ AHGT T GD E +K+ F E
Sbjct: 295 ALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVL--------- 345
Query: 355 LGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTP 405
+ S + GHL A+G + I +L L+ + +P +L P+ LD P
Sbjct: 346 VSSTASMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVP 396
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/411 (22%), Positives = 163/411 (39%), Gaps = 44/411 (10%)
Query: 10 IDTNTIAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTK 69
+ + + G+G P + W+ L + I+ + H ++
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLID-------------HFDTSAYA 61
Query: 70 VKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAI 129
K+ G + D +C D IS E MD ++ I A++D+G ++ + ++
Sbjct: 62 TKFAGLVKDFNCEDI----ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGA 117
Query: 130 FAGVSTADYKDILNEARHKGLVKSLAEPF-PF--------MIANRVSYLFNFHGPSEVID 180
+ L E H L+ PF M+A ++ ++ GPS I
Sbjct: 118 AI--GSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIA 175
Query: 181 TACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLS---ENGRCMT- 236
TA +S + I A + + D+ +AGG ++P A LS +N + +
Sbjct: 176 TAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASR 235
Query: 237 -FDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRG-NFENHGGHSSSPTSPNMLAQ 294
+D+ +G+V +G G+++L+ ++A IY G + H +SP N
Sbjct: 236 PWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPE-NGAGA 294
Query: 295 KQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCG 354
+ + R A I I Y+ AHGT T GD E +K+ F E
Sbjct: 295 ALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVL--------- 345
Query: 355 LGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTP 405
+ S K+ GHL A+G + I +L L+ + +P +L P+ LD P
Sbjct: 346 VSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVP 396
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/411 (22%), Positives = 166/411 (40%), Gaps = 44/411 (10%)
Query: 10 IDTNTIAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTK 69
+ + + G+G P + W+ L + I+ + H ++
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLID-------------HFDTSAYA 61
Query: 70 VKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAI 129
K+ G + D +C D IS E MD ++ I A++D+G ++ + ++
Sbjct: 62 TKFAGLVKDFNCEDI----ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGA 117
Query: 130 FAGVSTADYKDILNEARHKGLVKSLAEPF-PF--------MIANRVSYLFNFHGPSEVID 180
+ L E H L+ PF M+A ++ ++ GPS I
Sbjct: 118 AI--GSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIA 175
Query: 181 TACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLS---ENGRCMT- 236
TA +S + I A + + D+ +AGG ++P A LS +N + +
Sbjct: 176 TAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASR 235
Query: 237 -FDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRG-NFENHGGHSSSPTSPNMLAQ 294
+D+ +G+V +G G+++L+ ++A IY G + H +SP N
Sbjct: 236 PWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPE-NGAGA 294
Query: 295 KQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCG 354
+ + R A I I Y+ AHGT T GD E +K+ F E + +L
Sbjct: 295 ALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEA----ASRVL----- 345
Query: 355 LGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTP 405
+ S K+ GHL A+G + I +L L+ + +P +L P+ LD P
Sbjct: 346 VSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVP 396
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/415 (20%), Positives = 154/415 (37%), Gaps = 54/415 (13%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ I G+G + PG FW L + A + + DP + +
Sbjct: 5 VVITGVGVRAPGGNGTRQFWELLTSGRTATRRIS---------FFDPSPYRSQVAAE--- 52
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
AD FD G P E + MD + + A +G P L ++ + G +
Sbjct: 53 ----AD-FDPVAEGFGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSA 107
Query: 135 TADYKDILNE------------------ARHKGLVKSLAEPFPFMIANRVSYLFNFHGPS 176
A + E +RH + L P ++ V++ GP
Sbjct: 108 VAAATSLEREYLLLSDSGRDWEVDAAWLSRH--MFDYL---VPSVMPAEVAWAVGAEGPV 162
Query: 177 EVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNI-----TIASSKAGLLSEN 231
++ T C+S L ++ A+ ++ + D+ AG + +P + I ++ A
Sbjct: 163 TMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPE 222
Query: 232 GRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNM 291
FD +G+V +EG + +L+ +A+ I+ G + + +
Sbjct: 223 HASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADG 282
Query: 292 LAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKP 351
+ + + + I+YI AHG+GT+ D E K A E +TP
Sbjct: 283 REMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGE--HARRTP---- 336
Query: 352 YCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPF 406
+ S+K+ +GH A G + + +L L++ +P +L+ + LD P
Sbjct: 337 ---VSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVPL 388
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 17/244 (6%)
Query: 161 MIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITI 220
M + VS + F GP+ TAC++ +I A + + D+ +AGG
Sbjct: 157 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVA 216
Query: 221 ASSKAGLLS--------ENGRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIF 272
S++ LS E R FD +G+V EG GVI+L+ ++A IY
Sbjct: 217 GFSRSRALSTKFNSSPQEASR--PFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAEL 274
Query: 273 RGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNG 332
G + H + + + R++ + P I+Y+ AH T T +GD +E
Sbjct: 275 CGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARA 334
Query: 333 LKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHL 392
+K+ FSE H T S K GHL A+G + I +L + + P ++
Sbjct: 335 IKTVFSE-HATSGT------LAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNV 387
Query: 393 KIPN 396
K P+
Sbjct: 388 KNPD 391
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 147/349 (42%), Gaps = 29/349 (8%)
Query: 89 ISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVSTADYKDILNEARHK 148
+ P E +DP + + AL+DAG+ P S + + EA +
Sbjct: 76 MDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIGGIEGIVEAGYT 135
Query: 149 GLVKSLAEPFPFMIANRVSYLFNFH--------GPSEVIDTACSSSLIAINRAIESLHLK 200
K PF I R+ L + H GP+ + TAC++ AI A +
Sbjct: 136 LRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGDAARLIAFG 195
Query: 201 NCDLALAGGVNILASPNITIASSKA--GLLSENGRCMT-----FDQRANGYVRSEGVGVI 253
+ D+ +AGG S I++A A L +E T +D+ +G+V EG G++
Sbjct: 196 DADVMVAGGTESPVS-RISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVMGEGAGIV 254
Query: 254 LLKPLKNAIIDNDHIYGIFRG-NFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTI 312
+L+ L++A+ IY G H ++PT AQ+ ++ +RA I P I
Sbjct: 255 VLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQR-CMVAALKRAGIVPDEI 313
Query: 313 NYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
+YI AHGT T + D IE+ ++ E + S K++IGHL A+G
Sbjct: 314 DYINAHGTST-MADTIELGAVERVVGEAAAKIS---------MSSTKSSIGHLLGAAGAA 363
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNN 421
+ L ++ P +L P + ++D P + D + L N+
Sbjct: 364 EAVFSTLAIRDNIAPATLNLDNPAAQTRIDLVPHKPRERKID-VALSNS 411
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 32/276 (11%)
Query: 159 PFMIANR--------VSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGV 210
PF I R VS + GP+ + TACS+ AI A + L + D+ LAGG
Sbjct: 142 PFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAIGDAARLIALGDADVMLAGGT 201
Query: 211 NILASP--NITIASSKAGLLSENGR-------CMTFDQRANGYVRSEGVGVILLKPLKNA 261
SP I++A A R +D +G+V EG +++L+ L++A
Sbjct: 202 E---SPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDGFVMGEGAAIVVLEELEHA 258
Query: 262 IIDNDHIYGIFRG-NFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGT 320
IY G H ++P+ AQ+ ++ +RA +N ++YI AHGT
Sbjct: 259 KKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMMA-ALKRAQVNVSELDYINAHGT 317
Query: 321 GTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLM 380
T + D IE+ +A + YY P + S K++IGHL A+G I +L
Sbjct: 318 ST-MADVIEL----AAVERVLGYY-----APQVSMSSTKSSIGHLLGAAGAAEAIFCVLA 367
Query: 381 LKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCDWI 416
++ P +L+ P+ K+D P + D +
Sbjct: 368 IRDNIAPATLNLENPSIETKIDLVPHKPRERKIDTV 403
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 137/322 (42%), Gaps = 40/322 (12%)
Query: 97 MDPQLRLFIETTWAALEDAGYPP-SKLSGSKTAIFAGVSTADYKDILNEARHKGLVKSLA 155
MD +++ + AL +AG+ P ++ +TA + L EA G + +
Sbjct: 99 MDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPG-LAEAVRIGETRGVR 157
Query: 156 EPFPFMI--------ANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALA 207
PF I A ++S F GP TAC++S+ AI A+ + D+ LA
Sbjct: 158 RLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLA 217
Query: 208 GGVNILASPNITI---ASSKA---GLLSENGRC-MTFDQRANGYVRSEGVGVILLKPLKN 260
GG A +++ A+++A G E R FD+ +G+V EG +++++ L +
Sbjct: 218 GGAEA-AFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDH 276
Query: 261 AIIDNDHI------YGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINY 314
A+ YG + G S M A K L R ++ P ++Y
Sbjct: 277 ALARGARPIAEIIGYGTTADAYHMTAGPDDG--SGAMRAMKLAL----RMGDVAPEQVDY 330
Query: 315 IEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGV 374
+ AH T T +GD E+ LK+ F + + S K+ GHL A+G I
Sbjct: 331 VNAHATSTPVGDAGEIEALKTVFG----------VGAGPAISSTKSATGHLLGAAGAIEA 380
Query: 375 IKVLLMLKYKKIPGNPHLKIPN 396
+L L+ +PG +L+ P+
Sbjct: 381 AFSILALRDGVLPGTLNLEHPD 402
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 136/322 (42%), Gaps = 40/322 (12%)
Query: 97 MDPQLRLFIETTWAALEDAGYPP-SKLSGSKTAIFAGVSTADYKDILNEARHKGLVKSLA 155
MD +++ + AL +AG+ P ++ +TA + L EA G + +
Sbjct: 99 MDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPG-LAEAVRIGETRGVR 157
Query: 156 EPFPFMI--------ANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALA 207
PF I A ++S F GP TA ++S+ AI A+ + D+ LA
Sbjct: 158 RLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQAIGDAMRMIRTGEADVVLA 217
Query: 208 GGVNILASPNITI---ASSKA---GLLSENGRC-MTFDQRANGYVRSEGVGVILLKPLKN 260
GG A +++ A+++A G E R FD+ +G+V EG +++++ L +
Sbjct: 218 GGAEA-AFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDH 276
Query: 261 AIIDNDHI------YGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINY 314
A+ YG + G S M A K L R ++ P ++Y
Sbjct: 277 ALARGARPIAEIIGYGTTADAYHMTAGPDDG--SGAMRAMKLAL----RMGDVAPEQVDY 330
Query: 315 IEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGV 374
+ AH T T +GD E+ LK+ F + + S K+ GHL A+G I
Sbjct: 331 VNAHATSTPVGDAGEIEALKTVFG----------VGAGPAISSTKSATGHLLGAAGAIEA 380
Query: 375 IKVLLMLKYKKIPGNPHLKIPN 396
+L L+ +PG +L+ P+
Sbjct: 381 AFSILALRDGVLPGTLNLEHPD 402
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 20/235 (8%)
Query: 153 SLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNI 212
S + P A VS ++ G +AC+S AI A E++ + L LAGG
Sbjct: 138 SYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEE 197
Query: 213 LASPNITIASSKAGLLSENGR----CMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHI 268
L+ P + + + + N FD + +G V EG ++L+ ++A I
Sbjct: 198 LSGPAVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGAATLVLEEYEHAKARGATI 257
Query: 269 YGIFRG-NFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDP 327
+ G + G H + PT+ M QL ++ A ++ I Y+ AHGT T GD
Sbjct: 258 HAEIVGFGCNSDGAHMTQPTASTMARAMQLALE---DAKLDANAIAYVNAHGTSTDRGDV 314
Query: 328 IEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLK 382
E F E + P + S+K+ +GH A G + + M+K
Sbjct: 315 AESQATARTFGE-----RMP-------ISSLKSYVGHTLGACGALEAWWTIEMMK 357
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 143/357 (40%), Gaps = 35/357 (9%)
Query: 60 DPHLESGKTKVKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPP 119
DP +E V+ GG L + FD I + + W E+AG P
Sbjct: 64 DPFVEEFDLPVRIGGHLLEE--FDHQLTRIELRRMGYLQRMSTVLSRRLW---ENAGSPE 118
Query: 120 SKLSGSKTAIFAGVSTAD-----YKDILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHG 174
+ +I G+ +A+ Y D+ AR V L + H
Sbjct: 119 VDTNRLMVSIGTGLGSAEELVFSYDDM--RARGMKAVSPLTVQKYMPNGAAAAVGLERHA 176
Query: 175 PSEVID--TACSSSLIAINRAIESLHLKNCDLALAGGV--NILASPNITIASSKAGLLSE 230
+ V+ +AC+S AI RA + + L D A+ GGV I A P A + + +
Sbjct: 177 KAGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTN 236
Query: 231 N----GRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYG-IFRGNFENHGGHSSS 285
N G C FD+ +G+V EG ++L++ ++A +I I + + G H +
Sbjct: 237 NDDPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVA 296
Query: 286 PTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYK 345
P PN + + A + P I+++ AH TGT++GD E + +A
Sbjct: 297 P-DPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNRPAVY 355
Query: 346 TPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLD 402
P K+ +GH A G + I +L L+ + IP P L + N ++D
Sbjct: 356 AP-----------KSALGHSVGAVGAVESILTVLALRDQVIP--PTLNLVNLDPEID 399
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 20/241 (8%)
Query: 153 SLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNI 212
+L + P M + V+ F +G + I+TACSSS AI A S+ D+ L GG
Sbjct: 153 TLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 212
Query: 213 LASPNITIASSKA----GLLSENGRC-MTFDQRANGYVRSEGVGVILLKPLKNAIIDNDH 267
+P IA +A + R + FD+ NG+V EG G+++L+ L++A
Sbjct: 213 SITP-FAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGAT 271
Query: 268 IYGIFRGNFENHGG-HSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGD 326
I G H +SP A K + + + A I+P + Y+ AHGT T
Sbjct: 272 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLAL-EEAEISPEQVAYVNAHGTST---- 326
Query: 327 PIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKI 386
P G A +L + S K+ GHL A+G + I + +++ +
Sbjct: 327 PANEKGESGAI--------VAVLGKEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFV 378
Query: 387 P 387
P
Sbjct: 379 P 379
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 141 ILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLK 200
++ +A G+ LA PF HG + I +AC++S I A+E + L
Sbjct: 133 VVTKAMASGVSACLATPF------------KIHGVNYSISSACATSAHCIGNAVEQIQLG 180
Query: 201 NCDLALAGGVNILASPNITIASSKAGLLSE------NGRCMTFDQRANGYVRSEGVGVIL 254
D+ AGG L + G LS T+D +G+V + G G+++
Sbjct: 181 KQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVV 239
Query: 255 LKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLA-QKQLLIDVYRRANINPYT-I 312
++ L++A+ HIY G+ ++ +M+A + + + A T I
Sbjct: 240 VEELEHALARGAHIYAEIV-------GYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPI 292
Query: 313 NYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
+Y+ +HGT T +GD E+ ++ F + K+P + + KA GH A+GV
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGD-----KSPAIS------ATKAMTGHSLGAAGVQ 341
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD 414
I LLML++ I P + I L +V +T D
Sbjct: 342 EAIYSLLMLEHGFIA--PSINIEE--LDEQAAGLNIVTETTD 379
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 20/241 (8%)
Query: 153 SLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNI 212
+L + P M + V+ F +G + I+TACSSS AI A S+ D+ L GG
Sbjct: 153 TLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 212
Query: 213 LASPNITIASSKA----GLLSENGRC-MTFDQRANGYVRSEGVGVILLKPLKNAIIDNDH 267
+P IA +A + R + FD+ NG+V EG G+++L+ L++A
Sbjct: 213 SITP-FAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGAT 271
Query: 268 IYGIFRGNFENHGG-HSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGD 326
I G H +SP A K + + + A I+P + Y+ AHGT T
Sbjct: 272 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLAL-EEAEISPEQVAYVNAHGTST---- 326
Query: 327 PIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKI 386
P G A +L + S K+ GHL A+G + I + +++ +
Sbjct: 327 PANEKGESGAI--------VAVLGKAVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFV 378
Query: 387 P 387
P
Sbjct: 379 P 379
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 141 ILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLK 200
++ +A G+ LA PF HG + I +AC++S I A+E + L
Sbjct: 133 VVTKAMASGVSACLATPF------------KIHGVNYSISSACATSAHCIGNAVEQIQLG 180
Query: 201 NCDLALAGGVNILASPNITIASSKAGLLSE------NGRCMTFDQRANGYVRSEGVGVIL 254
D+ AGG L + G LS T+D +G+V + G G+++
Sbjct: 181 KQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVV 239
Query: 255 LKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLA-QKQLLIDVYRRANINPYT-I 312
++ L++A+ HIY G+ ++ +M+A + + + A T I
Sbjct: 240 VEELEHALARGAHIYAEIV-------GYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPI 292
Query: 313 NYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
+Y+ +HGT T +GD E+ ++ F + K+P + + KA GH A+GV
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGD-----KSPAIS------ATKAMTGHSLGAAGVQ 341
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD 414
I LLML++ I P + I L +V +T D
Sbjct: 342 EAIYSLLMLEHGFIA--PSINIEE--LDEQAAGLNIVTETTD 379
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 9/172 (5%)
Query: 234 CMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLA 293
C FD+ +G++ EG G+++L+ ++A IY G + + +PN
Sbjct: 219 CRPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEG 278
Query: 294 QKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYC 353
+ A + P ++YI AHGT T D E +K+ F E +
Sbjct: 279 AARAXKXAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAK---------KL 329
Query: 354 GLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTP 405
+ S K+ GH ASG I I LL ++ I HLK + LD P
Sbjct: 330 AISSTKSXTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVP 381
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 141 ILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLK 200
++ +A G+ LA PF HG + I +AC++S I A+E + L
Sbjct: 133 VVTKAMASGVSACLATPF------------KIHGVNYSISSACATSAHCIGNAVEQIQLG 180
Query: 201 NCDLALAGGVNILASPNITIASSKAGLLSE------NGRCMTFDQRANGYVRSEGVGVIL 254
D+ AGG L + G LS T+D +G+V + G G+++
Sbjct: 181 KQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVV 239
Query: 255 LKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLA-QKQLLIDVYRRANINPYT-I 312
++ L++A+ HIY G+ ++ +M+A + + + A T I
Sbjct: 240 VEELEHALARGAHIYAEIV-------GYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPI 292
Query: 313 NYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
+Y+ +HGT T +GD E+ ++ F + K+P + + +A GH A+GV
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGD-----KSPAIS------ATRAMTGHSLGAAGVQ 341
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD 414
I LLML++ I P + I L +V +T D
Sbjct: 342 EAIYSLLMLEHGFIA--PSINIEE--LDEQAAGLNIVTETTD 379
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 43/282 (15%)
Query: 141 ILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLK 200
++ +A G+ LA PF HG + I +AC++S I A+E + L
Sbjct: 145 VVTKAMASGVSACLATPF------------KIHGVNYSISSACATSAHCIGNAVEQIQLG 192
Query: 201 NCDLALAGGVNILASPNITIASSKAGLLSE------NGRCMTFDQRANGYVRSEGVGVIL 254
D+ AGG L + G LS T+D +G+V + G G+++
Sbjct: 193 KQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVV 251
Query: 255 LKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLA-QKQLLIDVYRRANINPYT-I 312
++ L++A+ HIY G+ ++ +M+A + + + A T I
Sbjct: 252 VEELEHALARGAHIYAEIV-------GYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPI 304
Query: 313 NYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
+Y+ +HGT T +GD E+ ++ F + K+P + + A GH A+GV
Sbjct: 305 DYLNSHGTSTPVGDVKELAAIREVFGD-----KSPAIS------ATAAMTGHSLGAAGVQ 353
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD 414
I LLML++ I P + I L +V +T D
Sbjct: 354 EAIYSLLMLEHGFIA--PSINIEE--LDEQAAGLNIVTETTD 391
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 43/282 (15%)
Query: 141 ILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLK 200
++ +A G+ LA PF HG + I +AC++S I A+E + L
Sbjct: 145 VVTKAMASGVSACLATPF------------KIHGVNYSISSACATSAHCIGNAVEQIQLG 192
Query: 201 NCDLALAGGVNILASPNITIASSKAGLLSE------NGRCMTFDQRANGYVRSEGVGVIL 254
D+ AGG L + G LS T+D +G+V + G G+++
Sbjct: 193 KQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVV 251
Query: 255 LKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLA-QKQLLIDVYRRANINPYT-I 312
++ L++A+ HIY G+ ++ +M+A + + + A T I
Sbjct: 252 VEELEHALARGAHIYAEIV-------GYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPI 304
Query: 313 NYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
+Y+ + GT T +GD E+ ++ F + K+P + + KA GH A+GV
Sbjct: 305 DYLNSQGTSTPVGDVKELAAIREVFGD-----KSPAIS------ATKAMTGHSLGAAGVQ 353
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD 414
I LLML++ I P + I L +V +T D
Sbjct: 354 EAIYSLLMLEHGFIA--PSINIEE--LDEQAAGLNIVTETTD 391
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 102/241 (42%), Gaps = 20/241 (8%)
Query: 153 SLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNI 212
+L + P M + V+ F +G + I+TACSSS AI A S+ D+ L GG
Sbjct: 154 TLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 213
Query: 213 LASPNITIASSKA----GLLSENGRC-MTFDQRANGYVRSEGVGVILLKPLKNAIIDNDH 267
+P IA +A + R + FD+ NG+V EG G+++L+ L++A
Sbjct: 214 SITP-FAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGAT 272
Query: 268 IYGIFRGNFENHGG-HSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGD 326
I G H +SP A K + + A I+P + Y+ A GT T
Sbjct: 273 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKL-ALEEAEISPEQVAYVNAAGTST---- 327
Query: 327 PIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKI 386
P G A +L + S K+ GHL A+G + I + +++ +
Sbjct: 328 PANEKGESGAI--------VAVLGKEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFV 379
Query: 387 P 387
P
Sbjct: 380 P 380
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 43/282 (15%)
Query: 141 ILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLK 200
++ +A G+ LA PF HG + I +AC++S I A+E + L
Sbjct: 145 VVTKAMASGVSACLATPF------------KIHGVNYSISSACATSAHCIGNAVEQIQLG 192
Query: 201 NCDLALAGGVNILASPNITIASSKAGLLSE------NGRCMTFDQRANGYVRSEGVGVIL 254
D+ AGG L + G LS T+D +G+V + G G+++
Sbjct: 193 KQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVV 251
Query: 255 LKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLA-QKQLLIDVYRRANINPYT-I 312
++ L++A+ HIY G+ ++ +M+A + + + A T I
Sbjct: 252 VEELEHALARGAHIYAEIV-------GYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPI 304
Query: 313 NYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
+Y+ + GT T +GD E+ ++ F + K+P + + KA GH A+GV
Sbjct: 305 DYLNSEGTSTPVGDVKELAAIREVFGD-----KSPAIS------ATKAMTGHSLGAAGVQ 353
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD 414
I LLML++ I P + I L +V +T D
Sbjct: 354 EAIYSLLMLEHGFIA--PSINIEE--LDEQAAGLNIVTETTD 391
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 135/329 (41%), Gaps = 44/329 (13%)
Query: 111 ALEDAGYPPSKLSGSKTAIFAGVSTADYKDILNEA---RHKGLVKSLAEPFPFMIANRVS 167
A+ DAG ++S +T I G + I++ A R KG + P +++ S
Sbjct: 86 AIADAGLTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTAS 145
Query: 168 ----YLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASS 223
F G + I +AC++S I A E + D AGG L +++
Sbjct: 146 ATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDL-DWTLSVLFD 204
Query: 224 KAGLLSE------NGRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFE 277
G +S + +D+ +G+V + G GV++L+ L+ A+ IYG G
Sbjct: 205 AMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGA 264
Query: 278 NHGGHSS-SPTSPNML-AQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKS 335
G+ +P+ + K L V + I+YI H T T GD E+ ++
Sbjct: 265 TSDGYDMVAPSGEGAIRCMKMALSTVTSK-------IDYINPHATSTPAGDAPEIEAIRQ 317
Query: 336 AFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIP 395
F + P + + K+ GH A+GV I LLM++ I + H++
Sbjct: 318 IFG------AGDVCPP---IAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIE-- 366
Query: 396 NSYLKLDNTPFY----LVNKTCDWIQLDN 420
+LD P + +V K D +QL+
Sbjct: 367 ----ELD--PAFADMPIVRKRIDNVQLNT 389
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 135/329 (41%), Gaps = 44/329 (13%)
Query: 111 ALEDAGYPPSKLSGSKTAIFAGVSTADYKDILNEA---RHKGLVKSLAEPFPFMIANRVS 167
A+ DAG ++S +T I G + I++ A R KG + P +++ S
Sbjct: 103 AIADAGLTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTAS 162
Query: 168 ----YLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASS 223
F G + I +AC++S I A E + D AGG L +++
Sbjct: 163 ATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDL-DWTLSVLFD 221
Query: 224 KAGLLSE------NGRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFE 277
G +S + +D+ +G+V + G GV++L+ L+ A+ IYG G
Sbjct: 222 AMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGA 281
Query: 278 NHGGHSS-SPTSPNML-AQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKS 335
G+ +P+ + K L V + I+YI H T T GD E+ ++
Sbjct: 282 TSDGYDMVAPSGEGAIRCMKMALSTVTSK-------IDYINPHATSTPAGDAPEIEAIRQ 334
Query: 336 AFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIP 395
F + P + + K+ GH A+GV I LLM++ I + H++
Sbjct: 335 IFG------AGDVCPP---IAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIE-- 383
Query: 396 NSYLKLDNTPFY----LVNKTCDWIQLDN 420
+LD P + +V K D +QL+
Sbjct: 384 ----ELD--PAFADMPIVRKRIDNVQLNT 406
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 21/229 (9%)
Query: 181 TACSSSLIAINRAIESLHLKNCDLALAGGVN--ILASPNITIASSKAGLLSENGR----C 234
+ACSS AI A + + + D+A+ GGV I A P + +A + + N
Sbjct: 169 SACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRA-MSTRNDEPERAS 227
Query: 235 MTFDQRANGYVRSEGVGVILLKPLKNAIIDNDH-IYGIFRGNFENHGGHSSSPTSPNMLA 293
FD+ +G+V E ++L++ ++A + + + H +P + + A
Sbjct: 228 RPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRA 287
Query: 294 QKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYC 353
+ + + A ++P I+++ AHGT T +GD E N ++ A + Y
Sbjct: 288 GRAMTRSL-ELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQAAVYAP------- 339
Query: 354 GLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLD 402
K+ +GH A G + + +L L+ IP + + P+ + LD
Sbjct: 340 -----KSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLD 383
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 43/282 (15%)
Query: 141 ILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLK 200
++ +A G+ LA PF HG + I +A ++S I A+E + L
Sbjct: 133 VVTKAMASGVSACLATPF------------KIHGVNYSISSASATSAHCIGNAVEQIQLG 180
Query: 201 NCDLALAGGVNILASPNITIASSKAGLLSE------NGRCMTFDQRANGYVRSEGVGVIL 254
D+ AGG L + G LS T+D +G+V + G G+++
Sbjct: 181 KQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVV 239
Query: 255 LKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLA-QKQLLIDVYRRANINPYT-I 312
++ L++A+ HIY G+ ++ +M+A + + + A T I
Sbjct: 240 VEELEHALARGAHIYAEIV-------GYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPI 292
Query: 313 NYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
+Y+ +HGT T +GD E+ ++ F + K+P + + KA GH A+GV
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGD-----KSPAIS------ATKAMTGHSLGAAGVQ 341
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD 414
I LLML++ I P + I L +V +T D
Sbjct: 342 EAIYSLLMLEHGFIA--PSINIEE--LDEQAAGLNIVTETTD 379
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 43/282 (15%)
Query: 141 ILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLK 200
++ +A G+ LA PF HG + I +A ++S I A+E + L
Sbjct: 133 VVTKAMASGVSACLATPF------------KIHGVNYSISSAXATSAHCIGNAVEQIQLG 180
Query: 201 NCDLALAGGVNILASPNITIASSKAGLLSE------NGRCMTFDQRANGYVRSEGVGVIL 254
D+ AGG L + G LS T+D +G+V + G G+++
Sbjct: 181 KQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVV 239
Query: 255 LKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLA-QKQLLIDVYRRANINPYT-I 312
++ L++A+ HIY G+ ++ +M+A + + + A T I
Sbjct: 240 VEELEHALARGAHIYAEIV-------GYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPI 292
Query: 313 NYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
+Y+ +HGT T +GD E+ ++ F + K+P + + KA GH A+GV
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGD-----KSPAIS------ATKAMTGHSLGAAGVQ 341
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD 414
I LLML++ I P + I L +V +T D
Sbjct: 342 EAIYSLLMLEHGFIA--PSINIEE--LDEQAAGLNIVTETTD 379
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 43/282 (15%)
Query: 141 ILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLK 200
++ +A G+ LA PF HG + I +A ++S I A+E + L
Sbjct: 145 VVTKAMASGVSACLATPF------------KIHGVNYSISSASATSAHCIGNAVEQIQLG 192
Query: 201 NCDLALAGGVNILASPNITIASSKAGLLSE------NGRCMTFDQRANGYVRSEGVGVIL 254
D+ AGG L + G LS T+D +G+V + G G+++
Sbjct: 193 KQDIVFAGGGEELCW-EMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVV 251
Query: 255 LKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLA-QKQLLIDVYRRANINPYT-I 312
++ L++A+ HIY G+ ++ +M+A + + + A T I
Sbjct: 252 VEELEHALARGAHIYAEIV-------GYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPI 304
Query: 313 NYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
+Y+ +HGT T +GD E+ ++ F + K+P + + KA GH A+GV
Sbjct: 305 DYLNSHGTSTPVGDVKELAAIREVFGD-----KSPAIS------ATKAMTGHSLGAAGVQ 353
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD 414
I LLML++ I P + I L +V +T D
Sbjct: 354 EAIYSLLMLEHGFIA--PSINIEE--LDEQAAGLNIVTETTD 391
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 25/233 (10%)
Query: 170 FNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLS 229
F G + I +AC++S I A+E + L D+ AGG L + L +
Sbjct: 154 FKIKGVNYSISSACATSAHCIGHALELIQLGKQDIVFAGGGEELCWEXACEFDAXGALST 213
Query: 230 E-----NGRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRG-NFENHGGHS 283
+ T+DQ +G+V + G G ++++ L++A+ HIY G + G
Sbjct: 214 KYNDTPAKASRTYDQDRDGFVIAGGGGXVVVEELEHALARGAHIYAEIVGYGATSDGADX 273
Query: 284 SSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEY 343
+P+ + Q A ++ I+Y HGT T +GD E+ ++ F
Sbjct: 274 VAPSGEGAVRCXQXA-----XAGVDT-PIDYXNVHGTSTPVGDVKELGAIREVFGN---- 323
Query: 344 YKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPN 396
TP + S KA GH A+GV I LL +++ I P + I N
Sbjct: 324 -NTPAIS------STKAXTGHSLGAAGVHEAIFSLLXVEHGFIA--PSINIDN 367
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 21/229 (9%)
Query: 181 TACSSSLIAINRAIESLHLKNCDLALAGGVN--ILASPNITIASSKAGLLSENGR----C 234
+A SS AI A + + + D+A+ GGV I A P + +A + + N
Sbjct: 169 SAQSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRA-MSTRNDEPERAS 227
Query: 235 MTFDQRANGYVRSEGVGVILLKPLKNAIIDNDH-IYGIFRGNFENHGGHSSSPTSPNMLA 293
FD+ +G+V E ++L++ ++A + + + H +P + + A
Sbjct: 228 RPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRA 287
Query: 294 QKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYC 353
+ + + A ++P I+++ AHGT T +GD E N ++ A + Y
Sbjct: 288 GRAMTRSL-ELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQAAVY--------- 337
Query: 354 GLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLD 402
+ K+ +GH A G + + +L L+ IP + + P+ + LD
Sbjct: 338 ---APKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLD 383
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 119/317 (37%), Gaps = 34/317 (10%)
Query: 98 DPQLRLFIETTWAALEDAGYPPSKLS----GSKTAIFAG---VSTADYKDILNEARHKGL 150
DP RL + AL+DA P L+ G TA G + +++ + +E
Sbjct: 77 DPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKS-- 134
Query: 151 VKSLAEPFPFMIA---NRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALA 207
S+ E F + A ++S GPS + + L A+ A ++ + L ++
Sbjct: 135 -VSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIR-RGTPLVVS 192
Query: 208 GGVNILASP---NITIASSKAGLLSENGRC-MTFDQRANGYVRSEGVGVILLKPLKNAII 263
GGV+ P IAS + ++ R + FD+RA GYV EG +++L+ A
Sbjct: 193 GGVDSALDPWGWVSQIASGRISTATDPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEA 252
Query: 264 DNDH-IYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGT 322
H YG G +P S ++ + A P ++ + A G G
Sbjct: 253 RGRHDAYGELAGCAST---FDPAPGSGRPAGLERAIRLALNDAGTGPEDVDVVFADGAGV 309
Query: 323 KLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLK 382
D E + F P+ P K G L + G + V+ L+ L+
Sbjct: 310 PELDAAEARAIGRVFGR----EGVPVTVP-------KTTTGRLYSGGGPLDVVTALMSLR 358
Query: 383 YKKI-PGNPHLKIPNSY 398
I P +P Y
Sbjct: 359 EGVIAPTAGVTSVPREY 375
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 79/352 (22%), Positives = 142/352 (40%), Gaps = 60/352 (17%)
Query: 82 FDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKL------------SGSKTAI 129
FD +GISP A +D I T A +G+ P++L G+
Sbjct: 2629 FDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGG 2688
Query: 130 FAGVSTADYKDILNEARHKGLVKSLAEPFPFMIANRV--SYLFNFHGPSEVIDTACSSSL 187
+ T + ++L A+ + L E P ++A V SY+ + + AC+++
Sbjct: 2689 MTSMQTMYHGNLLGRAKPNDI---LQEVLPNVVAAHVMQSYVGGYGAMVHPVG-ACATAA 2744
Query: 188 IAINRAIESLHLKNCDLALAGGVNILASPNIT----IASS------KAGLLSENGRCMTF 237
+++ ++ + L DL +AGG + L I +A++ +A +S++
Sbjct: 2745 VSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATADTEMMRAKGISDSKFSRAN 2804
Query: 238 DQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGI--FRGNFENHGGHSSSPTSPNMLA-- 293
D+R G++ ++G G ILL A+ + + + +F + G H+S P +P + A
Sbjct: 2805 DRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFAD-GVHTSIP-APGLGALG 2862
Query: 294 -----QKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYK--- 345
++ L + + I I H T T DP E +ELHE
Sbjct: 2863 AARGGRESTLARSLAQLGVGADDIAVISKHDTSTLANDPNE--------TELHERIADSM 2914
Query: 346 -----TPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHL 392
PL + S K GH + + V ++ + +L+ IP N L
Sbjct: 2915 GRAPGNPLF-----IVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPNRSL 2961
>pdb|3IBG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|E Chain E, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|F Chain F, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
Length = 348
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 16 AIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTS 50
+I+G G PG +NI++ +K+E+ + I+EV T
Sbjct: 195 SILGARGGLPGGQNIDELLQKMESLRETISEVNTQ 229
>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 447
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Query: 271 IFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINY----IEAHGTGTKLGD 326
+F NF+ + + P Q + DVYR+ ++ I++ + + T L
Sbjct: 145 VFVANFDENDPKTFEGVDP----QNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ 200
Query: 327 PI--EVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASG 370
P +N +K L Y K+P L P GLG + L A G
Sbjct: 201 PCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYG 246
>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide
Dissociation Inhibitor (Gdi) In Complex With A
Geranylgeranyl (Gg) Peptide
Length = 449
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Query: 271 IFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINY----IEAHGTGTKLGD 326
+F NF+ + + P Q + DVYR+ ++ I++ + + T L
Sbjct: 147 VFVANFDENDPKTFEGVDP----QNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ 202
Query: 327 PI--EVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASG 370
P +N +K L Y K+P L P GLG + L A G
Sbjct: 203 PCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYG 248
>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 433
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Query: 271 IFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINY----IEAHGTGTKLGD 326
+F NF+ + + P Q + DVYR+ ++ I++ + + T L
Sbjct: 147 VFVANFDENDPKTFEGVDP----QNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ 202
Query: 327 PI--EVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASG 370
P +N +K L Y K+P L P GLG + L A G
Sbjct: 203 PCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYG 248
>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum,
Pfl2060c
Length = 475
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 287 TSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDP-------IEVNGLKSAFSE 339
T N+ K ++++Y+ N+ TI+++ H L D + + +K
Sbjct: 181 TWDNLDPYKLTMLEIYKHFNLCQLTIDFL-GHAVALYLNDDYLKQPAYLTLERIKLYMQS 239
Query: 340 LHEYYKTPLLKPYCGLGSVKANIGHLEAASG 370
+ + K+P + P GLG + + A +G
Sbjct: 240 ISAFGKSPFIYPLYGLGGIPEGFSRMCAING 270
>pdb|1LLA|A Chain A, Crystal Structure Of Deoxygenated Limulus Polyphemus
Subunit Ii Hemocyanin At 2.18 Angstroms Resolution:
Clues For A Mechanism For Allosteric Regulation
pdb|1NOL|A Chain A, Oxygenated Hemocyanin (Subunit Type Ii)
Length = 628
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 320 TGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCG--LGSVKANIGHLEAASGVIGVIKV 377
T T L DPI N + + HEY T LKPY L + + + V V+
Sbjct: 351 TSTSLRDPIFYNWHRFIDNIFHEYKNT--LKPYDHDVLNFPDIQVQDVTLHARVDNVVHT 408
Query: 378 L-----LMLKYKKIPGNPHLKIPNSYLKLDNTPF-YLVN 410
L LK+ PGN I Y LD+ PF Y VN
Sbjct: 409 FMREQELELKHGINPGNA-RSIKARYYHLDHEPFSYAVN 446
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 442 IEEYRKNIKTKYIKENTVLVRIIMLSAKTKKSLKEYVILLLEFIIKEKNNFS--LCDLAY 499
+EEY + TKYI VR ++ K +EYV + + ++ ++ ++ Y
Sbjct: 34 LEEYYPDNVTKYIGGG---VRALLEKVLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPY 90
Query: 500 TLQVGREAMK---YRLAIYVNSYEDLIKKLQDYLN 531
TL EA+K ++LA+ N E+L KK+ D LN
Sbjct: 91 TL----EALKSKGFKLAVVSNKLEELSKKILDILN 121
>pdb|1OXY|A Chain A, Crystallographic Analysis Of Oxygenated And Deoxygenated
States Of Arthropod Hemocyanin Shows Unusual Differences
Length = 628
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 320 TGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCG--LGSVKANIGHLEAASGVIGVIKV 377
T T L DPI N + + HEY T LKPY L + + + V V+
Sbjct: 351 TSTSLRDPIFYNWHRFIDNIFHEYKNT--LKPYDHDVLNFPDIQVQDVTLHARVDNVVHT 408
Query: 378 L-----LMLKYKKIPGNPHLKIPNSYLKLDNTPF-YLVN 410
L LK+ PGN I Y LD+ PF Y VN
Sbjct: 409 FMREQELELKHGINPGNA-RSIKAKYYHLDHEPFSYAVN 446
>pdb|1LL1|A Chain A, Hydroxo Bridge Met Form Hemocyanin From Limulus
Length = 628
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 320 TGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCG--LGSVKANIGHLEAASGVIGVIKV 377
T T L DPI N + + HEY T LKPY L + + + V V+
Sbjct: 351 TSTSLRDPIFYNWHRFIDNIFHEYKNT--LKPYDHDVLNFPDIQVQDVTLHARVDNVVHT 408
Query: 378 L-----LMLKYKKIPGNPHLKIPNSYLKLDNTPF-YLVN 410
L LK+ PGN I Y LD+ PF Y VN
Sbjct: 409 FMREQELELKHGINPGNA-RSIKARYYHLDHEPFSYAVN 446
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,498,187
Number of Sequences: 62578
Number of extensions: 716106
Number of successful extensions: 1873
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1711
Number of HSP's gapped (non-prelim): 63
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)