RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy613
(545 letters)
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 513 bits (1324), Expect = e-173
Identities = 168/508 (33%), Positives = 251/508 (49%), Gaps = 50/508 (9%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ I G+ GK P S+N+ +FW L D +T+ RW P + G
Sbjct: 6 VVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDD-RRWKAGLYG-LP---------RRSG 54
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
L D FDA+FFG+ P +A MDPQLRL +E T+ A+ D G P L G+ T ++ GVS
Sbjct: 55 KLKDLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWVGVS 114
Query: 135 TADYKDILNEARHK-------GLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSL 187
++ + L+ G ++ M+ANR+S+ F+F GPS +DTACSSSL
Sbjct: 115 GSETSEALSRDPETLVGYSMVGCQRA-------MMANRLSFFFDFRGPSIALDTACSSSL 167
Query: 188 IAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENGRCMTFDQRANGYVRS 247
+A+ A +++H C A+ GG+N+L PN ++ + G+LS G C FD NGY RS
Sbjct: 168 MALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRS 227
Query: 248 EGVGVILLKPLKNAIIDNDHIYGIFRGNFENH-GGHSSSPTSPNMLAQKQLLIDVYRRAN 306
EGV +LL A +Y N G T P+ Q+QL+ +Y+ A
Sbjct: 228 EGVVAVLLTKKSLA----RRVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAG 283
Query: 307 INPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLE 366
+ P + YIEAHGTGTK+GDP E+NG+ A + PLL +GS K+N+GH E
Sbjct: 284 VAPESFEYIEAHGTGTKVGDPQELNGITRALCATRQ---EPLL-----IGSTKSNMGHPE 335
Query: 367 AASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYL-KLDNTPFYLVNKTCDWIQLDNNIPRR 425
ASG+ + KVLL L++ N H PN + L + +V++
Sbjct: 336 PASGLAALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVVDQPLPV------RGGN 389
Query: 426 AGVSSFGVGGSNVHVIIEEYRKNIKTKYIKENTVLVRIIMLSAKTKKSLKEYVILLLEFI 485
G++SFG GGSNVH+I+ + + L R++ S +T +++++ + L
Sbjct: 390 VGINSFGFGGSNVHIILRPNTQPPPAP--APHATLPRLLRASGRTPEAVQKLLEQGLRHS 447
Query: 486 IKEKNNFSLCDLAYTLQVGREAMKYRLA 513
++ L L V AM +R
Sbjct: 448 ---QDLAFLSMLNDIAAVPATAMPFRGY 472
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 535 bits (1380), Expect = e-171
Identities = 167/513 (32%), Positives = 254/513 (49%), Gaps = 50/513 (9%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ I G+ GK P S+N+ +FW L D +T RW P + G
Sbjct: 4 VVIAGMSGKLPESENLEEFWANLIGGVDMVT-ADDRRWKAGLYG-LP---------RRMG 52
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
L D FDA+FFG+ +A MDPQLR+ +E T+ A+ D G P+ L G+ T ++ GVS
Sbjct: 53 KLKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVGVS 112
Query: 135 TADYKDILNEARHK-------GLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSL 187
++D + L+ G ++ M+ANR+S+ F+F GPS IDTACSSSL
Sbjct: 113 SSDASEALSRDPETLVGYSMIGCQRA-------MMANRLSFFFDFKGPSITIDTACSSSL 165
Query: 188 IAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENGRCMTFDQRANGYVRS 247
+A+ A +++ C A+ GG+N+L PN ++ K G+LS++G C +FD GY R+
Sbjct: 166 LALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRA 225
Query: 248 EGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSS-PTSPNMLAQKQLLIDVYRRAN 306
E V +LL A +Y N G T P+ Q+QL+ +Y A
Sbjct: 226 EAVVAVLLTKKSLA----RRVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAG 281
Query: 307 INPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLE 366
+P ++ YIEAHGTGTK+GDP E+NG+ +A PLL +GS K+N+GH E
Sbjct: 282 PDPESLEYIEAHGTGTKVGDPQELNGIVNALCATRR---EPLL-----IGSTKSNMGHPE 333
Query: 367 AASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLK-LDNTPFYLVNKTCDWIQLDNNIPRR 425
ASGV +IKVLL L++ N H PN + L + +V++
Sbjct: 334 PASGVAALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVDRPLPI------RGGN 387
Query: 426 AGVSSFGVGGSNVHVIIEEYRKNIKTKYIKENTVLVRIIMLSAKTKKSLKEYVILLLEFI 485
G++SFG GGSNVHVI++ + ++ L R++ S +T ++++ + L
Sbjct: 388 VGINSFGFGGSNVHVILQPNSRPAPPP--AQHAALPRLLQASGRTLEAVQTLLEQGLRHS 445
Query: 486 IKEKNNFSLCDLAYTLQVGREAMKYRLAIYVNS 518
++ + L V AM +R +
Sbjct: 446 ---RDLAFVGMLNEIAAVSPVAMPFRGYAVLGG 475
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 486 bits (1254), Expect = e-163
Identities = 170/523 (32%), Positives = 277/523 (52%), Gaps = 32/523 (6%)
Query: 15 IAIIGIGGKFPGSKNIN---DFWRKLENNEDAITEVPTSR-WDWKAIYGDPHLE-SGKTK 69
IAI+ + + PG +N W L + ++ PT R WD ++ P + G +
Sbjct: 8 IAIVSMACRLPG--GVNTPQRLWELLREGGETLSGFPTDRGWDLARLH-HPDPDNPGTSY 64
Query: 70 VKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAI 129
V GGFL DA FDA FFG+SP EA MDPQ RL +ET+W +E+AG P L G+ T +
Sbjct: 65 VDKGGFLDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTATGV 124
Query: 130 FAGVSTADYKDILNEARHK------GLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTAC 183
F GV+ Y + A G+ ++A + R+SY GPS +DTAC
Sbjct: 125 FLGVAKFGYGEDTAAAEDVEGYSVTGVAPAVA-------SGRISYTMGLEGPSISVDTAC 177
Query: 184 SSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENGRCMTFDQRANG 243
SSSL+A++ A+ESL +A+ GG ++A+P + + S+ L+ +GR F A+G
Sbjct: 178 SSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADG 237
Query: 244 YVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYR 303
+ SEGV ++LL+ L A + + + RG+ N G S+ ++P+ AQ++++
Sbjct: 238 FGFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALE 297
Query: 304 RANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIG 363
+ P ++ +EAHGTGT LGDPIE N L + + PL LGSVK+NIG
Sbjct: 298 SCGLEPGDVDAVEAHGTGTALGDPIEANALLDTYGRDRD-ADRPLW-----LGSVKSNIG 351
Query: 364 HLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNNIP 423
H +AA+GV G++KV+L L+ ++P H++ P ++ + L+ W + +
Sbjct: 352 HTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDWSSGGVALLAGNQPWRRGER--T 409
Query: 424 RRAGVSSFGVGGSNVHVIIEEYRKNIKTKYIKENTVLVRIIMLSAKTKKSLKEYVILLLE 483
RRA VS+FG+ G+N HVI+EE + + + V +++SA++ +L+ + E
Sbjct: 410 RRAAVSAFGISGTNAHVIVEEAPEREHRETTAHDGRPV-PLVVSARSTAALRAQAAQIAE 468
Query: 484 FIIKEKNNFSLCDLAYTLQVGREAMKYRLAIYVNSYEDLIKKL 526
+ E+ + L + L R ++R A+ ++ E+ ++ L
Sbjct: 469 LL--ERPDADLAGVGLGLATTRARHEHRAAVVASTREEAVRGL 509
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 479 bits (1234), Expect = e-160
Identities = 187/533 (35%), Positives = 287/533 (53%), Gaps = 38/533 (7%)
Query: 3 KLNSLEDIDTNTIAIIGIGGKFPGS-KNINDFWRKLENNEDAITEVPTSRWDWKAIYGDP 61
+L +E IAI+G+ +FPG + FW + DAI E P R W+ DP
Sbjct: 29 RLREVEHRAGEPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRG-WEP---DP 84
Query: 62 HLESGKTKVKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSK 121
+ GG L A FDA FFGISP EA MDPQ R+ +E +W ALE AG+ P
Sbjct: 85 D-------ARLGGMLAAAGDFDAGFFGISPREALAMDPQQRIMLEISWEALERAGHDPVS 137
Query: 122 LSGSKTAIFAGVSTADYKDILNEARHK-------GLVKSLAEPFPFMIANRVSYLFNFHG 174
L GS T +F GV T DY +EA + G S+A + RV+Y G
Sbjct: 138 LRGSATGVFTGVGTVDYGPRPDEAPDEVLGYVGTGTASSVA-------SGRVAYCLGLEG 190
Query: 175 PSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENGRC 234
P+ +DTACSS L A++ A+ESL C LALAGGV +++SP G L+ +GRC
Sbjct: 191 PAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLAADGRC 250
Query: 235 MTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLAQ 294
F + A+G+ +EG GV++L+ L A + + + RG+ N G S+ T+P+ AQ
Sbjct: 251 KPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQ 310
Query: 295 KQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCG 354
++++ A + ++Y+EAHGTGT+LGDPIEV+ L S + + PL
Sbjct: 311 QRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAERD-PDDPLW----- 364
Query: 355 LGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD 414
+GSVK+NIGH +AA+GV GV+K +L L++ ++P H P+ ++ D +V++
Sbjct: 365 IGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEPSPQIEWDLGAVSVVSQARS 424
Query: 415 WIQLDNNIPRRAGVSSFGVGGSNVHVIIEEYRKNIKTKYIKENTVLVRIIMLSAKTKKSL 474
W + PRRAGVSSFG+ G+N HVI+EE + + + ++ + ++LS + ++++
Sbjct: 425 WPAGER--PRRAGVSSFGISGTNAHVIVEEAPEADEPEPAPDSGPVP--LVLSGRDEQAM 480
Query: 475 KEYVILLLEFIIKEKNNFSLCDLAYTLQVGREAMKYRLAIYVNSYEDLIKKLQ 527
+ L + + + SL D +TL R A ++R + V ++ + L+
Sbjct: 481 RAQAGRLADH-LAREPRNSLRDTGFTLATRRSAWEHRAVV-VGDRDEALAGLR 531
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 133 bits (335), Expect = 8e-33
Identities = 66/421 (15%), Positives = 118/421 (28%), Gaps = 114/421 (27%)
Query: 36 KLENNEDA-ITEVPTSRWDWKAIYGDPHLESGKTKVKWGGFLYDA---DC---------F 82
K ++ + I E+P + L G T ++ A D +
Sbjct: 946 KHQHGDKVDIFEIPETGEYSVK------LLKGAT-----LYIPKALRFDRLVAGQIPTGW 994
Query: 83 DANFFGISPAEAEVMDPQLRLFIETTWA------ALEDAGYPPSK-------------LS 123
+A +GIS +DP + A +G S
Sbjct: 995 NAKTYGISDDIISQVDP----ITL--FVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCS 1048
Query: 124 GSKTAIFAGVST--ADYKDILNEARHKGLVKSLAEPF--PFMIAN----RVSYLFNFHGP 175
GS GVS +KD V++ I L + GP
Sbjct: 1049 GS---GMGGVSALRGMFKDRFK----DEPVQN---DILQESFINTMSAWVNMLLISSSGP 1098
Query: 176 SEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNIT-IASSKAGLLS----E 230
+ AC++S+ +++ +E++ + + GG + + KA S E
Sbjct: 1099 IKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKA--TSNTLEE 1156
Query: 231 NGRCMT-------FDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENH-GGH 282
T NG++ ++G G+ ++ A+ IYGI
Sbjct: 1157 FEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIG 1216
Query: 283 SSSP-------------------TSPNMLAQKQLLIDVYRRANIN---PYTINYIEAHGT 320
S P SPN+ + + V R A I + ++
Sbjct: 1217 RSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAE 1276
Query: 321 GTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIG-HLEAASGVIGVIKVLL 379
D E ++ +E L + + G I ++ L
Sbjct: 1277 EIPSEDQNEFLLERTREIH-NEAESQ--------LRAAQQQWGNDFYKRDPRIAPLRGAL 1327
Query: 380 M 380
Sbjct: 1328 A 1328
Score = 101 bits (253), Expect = 1e-22
Identities = 39/247 (15%), Positives = 69/247 (27%), Gaps = 26/247 (10%)
Query: 208 GGVNILASPNITIASSKAGLLSENGRCMTFDQRANG----------YVRSEGVGVILLKP 257
G+ A + + + L+ R R ++ E +
Sbjct: 1224 KGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQ 1283
Query: 258 LKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEA 317
+ + I+ + L + +
Sbjct: 1284 NEFLLERTREIHNEAESQL-RAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASF 1342
Query: 318 HGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKV 377
HGT TK D E + L P++ K GH + A+G +
Sbjct: 1343 HGTSTKANDKNESATINEMMKHLGRSEGNPVI-----GVFQKFLTGHPKGAAGAWMMNGA 1397
Query: 378 LLMLKYKKIPGNPHLKIPNSYL-KLDNTPFYLVNKTCDWIQLDNNIPRRAGVS-SFGVGG 435
L +L IPGN + + L + + + +KT ++ D RA SFG G
Sbjct: 1398 LQILNSGIIPGNRNADNVDKILEQFEYVLY--PSKT---LKTDGV---RAVSITSFGFGQ 1449
Query: 436 SNVHVII 442
I+
Sbjct: 1450 KGGQAIV 1456
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 124 bits (315), Expect = 2e-31
Identities = 86/467 (18%), Positives = 165/467 (35%), Gaps = 88/467 (18%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ I G+G + PG FW L + A S +D + +
Sbjct: 5 VVITGVGVRAPGGNGTRQFWELLTSGRTATR--RISFFD-----------PSPYRSQVAA 51
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIF---- 130
+AD P E + MD + + A +G P L ++ +
Sbjct: 52 ---EADFDPVAEG-FGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSA 107
Query: 131 -AGVST--ADYKDILNEARHKGLVKSLAEPF--PFMIAN----RVSYLFNFHGPSEVIDT 181
A ++ +Y + + R + + +++ + V++ GP ++ T
Sbjct: 108 VAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVST 167
Query: 182 ACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSENGRCMT-- 236
C+S L ++ A+ ++ + D+ AG + +P I +A + +A + N
Sbjct: 168 GCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITP-IVVACFDAIRA-TTARNDDPEHAS 225
Query: 237 --FDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSS----PTSPN 290
FD +G+V +EG + +L+ +A+ I+ E G + T
Sbjct: 226 RPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHA------EISGYATRCNAYHMTGLK 279
Query: 291 ------MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYY 344
+ L + + I+YI AHG+GT+ D E K A E H
Sbjct: 280 ADGREMAETIRVAL----DESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGE-HA-R 333
Query: 345 KTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNT 404
+TP + S+K+ +GH A G + + +L L++ +P +L+ + LD
Sbjct: 334 RTP-------VSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYV 386
Query: 405 PFYLVNKTCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEYR 446
P R + G GG +++ +
Sbjct: 387 P---------------LEARERKLRSVLTVGSGFGGFQSAMVLRDAE 418
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 121 bits (307), Expect = 3e-30
Identities = 106/459 (23%), Positives = 173/459 (37%), Gaps = 85/459 (18%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNE---DAITEVPTSRWDWKAIYGDPHLESGKTKVKWG 73
+ GIG P + W + +T + VK
Sbjct: 8 VTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPD----------------DFPVKIA 51
Query: 74 GFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGV 133
L D FD + + EA MD I + A++D+G + ++ ++ G
Sbjct: 52 AELKD---FDVEKY-LEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVGVWIGS 107
Query: 134 STADYKDILNEARHKGLVKSLAE---PF--PFMIAN----RVSYLFNFHGPSEVIDTACS 184
+ E +++ + PF P MI + +VS F G + TAC+
Sbjct: 108 GIGGMETF--ETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTTVTACA 165
Query: 185 SSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSENGRCMT----F 237
++ +I A + + + D + GG + +++A ++KA LS N T F
Sbjct: 166 TATNSIGDAFKVIERGDADAMITGGAEAPITK-MSLAGFTANKA--LSLNPDPETACRPF 222
Query: 238 DQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGG------HSSSPTSPNM 291
D+ +G++ EG G+++L+ ++A IY G G H ++P +PN
Sbjct: 223 DKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVG-----YGATGDAYHITAP-APNG 276
Query: 292 LAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKP 351
+ + A + P ++YI AHGT T D E +K+ F E H K
Sbjct: 277 EGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGE-HA-KKLA---- 330
Query: 352 YCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNK 411
+ S K+ GH ASG I I LL ++ I HLK + LD P
Sbjct: 331 ---ISSTKSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVP------ 381
Query: 412 TCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEY 445
N R A V+ SFG GG N ++ +
Sbjct: 382 ---------NEAREANVNVVISNSFGFGGHNATLVFKRI 411
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 122 bits (308), Expect = 3e-30
Identities = 105/459 (22%), Positives = 172/459 (37%), Gaps = 85/459 (18%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNE---DAITEVPTSRWDWKAIYGDPHLESGKTKVKWG 73
I G+G P ++ W D IT + T V
Sbjct: 32 ITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTE----------------PYSVHLA 75
Query: 74 GFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGV 133
G L + F+ I EA MD + I A++DA ++ + + ++ G
Sbjct: 76 GELKN---FNIEDH-IDKKEARRMDRFTQYAIVAAREAVKDAQLDINENTADRIGVWIGS 131
Query: 134 STADYKDILNEARHKGLVKSLAE---PF--PFMIAN----RVSYLFNFHGPSEVIDTACS 184
+ E HK L+ PF P +I + +VS GP+ TAC+
Sbjct: 132 GIGGMETF--EIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACA 189
Query: 185 SSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSENGRCMT----F 237
+ +I A + + + D + GG + + IA +S+A LS N T F
Sbjct: 190 TGTNSIGEAFKIVQRGDADAMITGGTEAPITH-MAIAGFSASRA--LSTNDDIETACRPF 246
Query: 238 DQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGG------HSSSPTSPNM 291
+ +G+V EG G+++++ L++A +IY G G H ++P +P
Sbjct: 247 QEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVG-----YGTTGDAYHITAP-APEG 300
Query: 292 LAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKP 351
+ + A I P + Y+ AHGT T +GD EV +K+ F E
Sbjct: 301 EGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGE--AAKHLK---- 354
Query: 352 YCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNK 411
+ S K+ GHL A+G I I L +K K+ H P+ LD P
Sbjct: 355 ---VSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIVP------ 405
Query: 412 TCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEY 445
N + ++ S G GG N ++ +++
Sbjct: 406 ---------NEAQDLDITYAMSNSLGFGGHNAVLVFKKF 435
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 118 bits (299), Expect = 3e-29
Identities = 107/461 (23%), Positives = 174/461 (37%), Gaps = 86/461 (18%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNE---DAITEVPTSRWDWKAIYGDPHLESGKTKVKWG 73
+ G+G P + D+W+ L IT S ++G
Sbjct: 11 VTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDAS----------------DQACRFG 54
Query: 74 GFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGV 133
G + D FDA F + EA+ MD + + A+ DA ++L+ + + G
Sbjct: 55 GEVKD---FDATQF-LDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGT 110
Query: 134 STADYKDILNEARHKGLVKSLAE---PF--PFMIAN----RVSYLFNFHGPSEVIDTACS 184
K + E + L+ PF P MIAN + GP+ TAC+
Sbjct: 111 GIGGLKVL--EDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACA 168
Query: 185 SSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSEN-----GRCMT 236
+ AI A + + GG +P ++ A S++A LS
Sbjct: 169 AGSNAIGDAFRLVQNGYAKAMICGGTEAAITP-LSYAGFASARA--LSFRNDDPLHASRP 225
Query: 237 FDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGG------HSSSPTSPN 290
FD+ +G+V EG G+++L+ L++A+ IYG G H ++P P+
Sbjct: 226 FDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVG-----YAMTCDAYHITAP-VPD 279
Query: 291 MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLK 350
+ + + + + P ++YI AHGT T D E +K A H Y
Sbjct: 280 GRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGN-HA-YNIA--- 334
Query: 351 PYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVN 410
+ S K+ GHL SG I + ++ + K+P +L+ P+ LD P
Sbjct: 335 ----VSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVP----- 385
Query: 411 KTCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEYR 446
R V SFG GG NV + ++Y+
Sbjct: 386 ----------GQSRALIVDVALSNSFGFGGHNVTLAFKKYQ 416
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 116 bits (292), Expect = 3e-28
Identities = 106/467 (22%), Positives = 176/467 (37%), Gaps = 84/467 (17%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNE---DAITEVPTSRWDWKAIYGDPHLESGKTK---- 69
+ G+G P + + WR+L + E +T + + +K
Sbjct: 5 VTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAF 64
Query: 70 VKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGY-PPSKLSGSKTA 128
V +G + FD + ++ + + + AL DA + P + +T
Sbjct: 65 VPYGSNPGE---FDEALW----LNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTG 117
Query: 129 IFAGVSTADYKDILNEAR---HKGLVK-SLAEPF--PFMIAN----RVSYLFNFHGPSEV 178
+ G DI+ A+ K L + S PF P ++ N VS + F GP+
Sbjct: 118 VSIGGGIGSICDIVEAAQLICEKRLRRLS---PFFIPKILVNMASGHVSMKYGFQGPNHA 174
Query: 179 IDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSENGR-- 233
TAC++ +I A + + D+ +AGG +++A S+A LS
Sbjct: 175 AVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDA-LSVAGFSRSRA--LSTKFNSS 231
Query: 234 ----CMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSP--- 286
FD +G+V EG GVI+L+ ++A IY G G S
Sbjct: 232 PQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCG-----YGMSGDAHHI 286
Query: 287 TSPN------MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSEL 340
T P +LA + L R++ + P I+Y+ AH T T +GD +E +K+ FSE
Sbjct: 287 TQPPEDGKGAVLAMTRAL----RQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSE- 341
Query: 341 HEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLK 400
H S K GHL A+G + I +L + + P ++K P+
Sbjct: 342 HAT------SGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFD 395
Query: 401 LDNTPFYLVNKTCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVII 442
P ++ V SFG GG+N ++
Sbjct: 396 KRFMPL--------------TTSKKMLVRTAMSNSFGFGGTNASLLF 428
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 115 bits (290), Expect = 4e-28
Identities = 80/468 (17%), Positives = 130/468 (27%), Gaps = 108/468 (23%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNE---DAITEVPTSRWDWKAIYGDPHLESGKTKVKWG 73
I G+G P + +W + + +T S +
Sbjct: 13 ITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVS----------------RYPATLA 56
Query: 74 GFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGV 133
G + D F A I DP RL + AL+DA P L+ +
Sbjct: 57 GQIDD---FHAPDH-IPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTAN 112
Query: 134 STADYKDILNEARHKGLVKSLAE-------PF--PFMIAN----RVSYLFNFHGPSEVID 180
+ + E + L + ++S GPS +
Sbjct: 113 ACGGFDFTHRE------FRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALV 166
Query: 181 TACSSSLIAIN---RAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSENGRC 234
+ L A+ R I + L ++GGV+ P +S +S
Sbjct: 167 AEQAGGLDALGHARRTIR----RGTPLVVSGGVDSALDP-WGWVSQIASGR--ISTATDP 219
Query: 235 MT----FDQRANGYVRSEGVGVILLKPLKNAIIDN-DHIYGIFRGNFENHGGHSSS---- 285
FD+RA GYV EG +++L+ A YG E G S+
Sbjct: 220 DRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYG------ELAGCASTFDPAP 273
Query: 286 PTSPN---MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHE 342
+ A + L A P ++ + A G G D E + F
Sbjct: 274 GSGRPAGLERAIRLAL----NDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGR-EG 328
Query: 343 YYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLD 402
T K G L + G + V+ L+ L+ I + +D
Sbjct: 329 VPVT----------VPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGID 378
Query: 403 NTPFYLVNKTCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEY 445
PR + G G N ++ +
Sbjct: 379 LVL---------------GEPRSTAPRTALVLARGRWGFNSAAVLRRF 411
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 114 bits (289), Expect = 7e-28
Identities = 90/460 (19%), Positives = 147/460 (31%), Gaps = 87/460 (18%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGGFL 76
I G+GG ++ L+ +A+ WD+ + L
Sbjct: 10 ITGMGGVTALGSRWDEIEAALKAGRNAVR--RMPDWDYFESL----------HTRLAAPL 57
Query: 77 YDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSK-LSGSKTAIFAGVST 135
F + M + + AL DAG+ + +S + + G S+
Sbjct: 58 PG---FAQPAD-WPRKKTRSMGRVSMYAVRASELALADAGFAGDESISDGRMGVAYGSSS 113
Query: 136 ADYKDILNEARHKGLVKSLAE---PF--PFMIAN----RVSYLFNFHGPSEVIDTACSSS 186
+ I A L M+ + VS ++ G +AC+S
Sbjct: 114 GSVEPI--RAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASG 171
Query: 187 LIAINRAIESLHLKNCDLALAGGVNILASPNIT-IASSKAGLLSE-----NGRCMTFDQR 240
AI A E++ + L LAGG L+ P + + A S + FD +
Sbjct: 172 SQAIGYAYENIAMGKQTLMLAGGAEELSGPAVAVFDTLYA--TSTRNDEPHLTPRPFDAK 229
Query: 241 ANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSP----TSPNM----L 292
+G V EG ++L+ ++A I+ E G +S T P
Sbjct: 230 RDGLVVGEGAATLVLEEYEHAKARGATIHA------EIVGFGCNSDGAHMTQPTASTMAR 283
Query: 293 AQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPY 352
A + L A ++ I Y+ AHGT T GD E F E + P
Sbjct: 284 AMQLAL----EDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGE-----RMP----- 329
Query: 353 CGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPN-SYLKLDNTPFYLVNK 411
+ S+K+ +GH A G + + M+K +L + + LD
Sbjct: 330 --ISSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACAPLDYIR------ 381
Query: 412 TCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEYR 446
R +F GG N +I R
Sbjct: 382 ---------GEARAIDAEYVMSNNFAFGGINTSLIFRRVR 412
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 113 bits (286), Expect = 2e-27
Identities = 102/453 (22%), Positives = 173/453 (38%), Gaps = 77/453 (16%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNE---DAITEVPTSRWDWKAIYGDPHLESGKTKVKWG 73
+ G+G P + W+ L + I TS K+
Sbjct: 22 VTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS----------------AYATKFA 65
Query: 74 GFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGV 133
G + D F+ IS E MD ++ I A++D+G ++ + ++ G
Sbjct: 66 GLVKD---FNCEDI-ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGS 121
Query: 134 STADYKDILNEARHKGLVKSLAE---PF--PFMIAN----RVSYLFNFHGPSEVIDTACS 184
I E H L+ PF P I N ++ ++ GPS I TA +
Sbjct: 122 GIGGLGLI--EENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAAT 179
Query: 185 SSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSE-----NGRCMT 236
S + I A + + D+ +AGG ++P + + +++A LS
Sbjct: 180 SGVHNIGHAARIIAYGDADVMVAGGAEKASTP-LGVGGFGAARA--LSTRNDNPQAASRP 236
Query: 237 FDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGG------HSSSPTSPN 290
+D+ +G+V +G G+++L+ ++A IY G G H +SP N
Sbjct: 237 WDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVG-----FGMSSDAYHMTSP-PEN 290
Query: 291 MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLK 350
+ + R A I I Y+ AHGT T GD E +K+ F E +
Sbjct: 291 GAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGE-AA-SRVL--- 345
Query: 351 PYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVN 410
+ S K+ GHL A+G + I +L L+ + +P +L P+ LD P +
Sbjct: 346 ----VSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVP----H 397
Query: 411 KTCDWIQLDNNIPRRAGVS-SFGVGGSNVHVII 442
+ ++ + SFG GG+N +I
Sbjct: 398 EARQVSGME------YTLCNSFGFGGTNGSLIF 424
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 112 bits (284), Expect = 4e-27
Identities = 94/467 (20%), Positives = 157/467 (33%), Gaps = 104/467 (22%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNE---DAITEVPTSRWDWKAIYGDPHLESGKTKVKWG 73
+ G G P +FW L + IT+ S V
Sbjct: 27 VTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHS----------------DFDVHNA 70
Query: 74 GFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGV 133
+ D F + + + D + A+ A L+ + +
Sbjct: 71 AEIQD---FPFDKY-FVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVAS 126
Query: 134 STADYKDILNEARHKGLVKSLAE-------PF--PFMIAN----RVSYLFNFHGPSEVID 180
K+I ++ V L E P P + N V+ F +G + I+
Sbjct: 127 GIGGIKEIEDQ------VLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSIN 180
Query: 181 TACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSENGRCMT- 236
TACSSS AI A S+ D+ L GG +P IA + A LS
Sbjct: 181 TACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITP-FAIAGFQALTA--LSTTEDPTRA 237
Query: 237 ---FDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSP----TSP 289
FD+ NG+V EG G+++L+ L++A I E G ++ TSP
Sbjct: 238 SIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILA------EVVGYGNTCDAYHMTSP 291
Query: 290 N------MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEY 343
+ + A K L A I+P + Y+ AHGT T + E + + +
Sbjct: 292 HPEGQGAIKAIKLAL----EEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGK---- 343
Query: 344 YKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDN 403
+ P + S K+ GHL A+G + I + +++ +P + Y++ +
Sbjct: 344 -EVP-------VSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANV 395
Query: 404 TPFYLVNKTCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEY 445
+ +FG GG N + + +
Sbjct: 396 VY---------------GQGLEKEIPYAISNTFGFGGHNAVLAFKRW 427
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 112 bits (283), Expect = 5e-27
Identities = 108/465 (23%), Positives = 175/465 (37%), Gaps = 93/465 (20%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTK----VKW 72
I GIG P + W +L E I ++K+I V
Sbjct: 25 ITGIGLVTPLGVGTHLVWDRLIGGESGIV--SLVGEEYKSI---------PCSVAAYVPR 73
Query: 73 GGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGY-PPSKLSGSKTAIFA 131
G F+ F +S ++ + M + I A++D+G+ P S+ T +
Sbjct: 74 GSDEGQ---FNEQNF-VSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAI 129
Query: 132 GVSTADYKDILNEAR---HKGLVK-SLAEPF--PFMIAN----RVSYLFNFHGPSEVIDT 181
G+ + + A KG K S PF P ++ N +VS + GP+ + T
Sbjct: 130 GMGMIPLEVVSETALNFQTKGYNKVS---PFFVPKILVNMAAGQVSIRYKLKGPNHAVST 186
Query: 182 ACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSENGR----C 234
AC++ A+ + + + D+ +AGG + SP +++A ++A LS N C
Sbjct: 187 ACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISP-LSLAGFSRARA--LSTNSDPKLAC 243
Query: 235 MTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSP---TSPN- 290
F + +G+V EG V++L+ ++A+ IY G G S T+P+
Sbjct: 244 RPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLG-----YGLSGDAGHITAPDP 298
Query: 291 -----MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYK 345
+ L + A + P I+YI AH T T LGD E +K F + H Y
Sbjct: 299 EGEGALRCMAAAL----KDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKD-HA-YA 352
Query: 346 TPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTP 405
+ S K GHL A+G + L Y+K+P +L L+ P
Sbjct: 353 LA-------VSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVP 405
Query: 406 FYLVNKTCDWIQLDNNIPRRAGVS--------SFGVGGSNVHVII 442
+ SFG GG+N + I
Sbjct: 406 ---------------LKAQEWKTEKRFIGLTNSFGFGGTNATLCI 435
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 111 bits (281), Expect = 8e-27
Identities = 85/412 (20%), Positives = 146/412 (35%), Gaps = 86/412 (20%)
Query: 77 YDADCFDANFFG---------ISPAEAEVMDPQLRLFIETTWA----ALEDAGYPPSKLS 123
Y F G + A+ DAG ++S
Sbjct: 60 YAELGFRCQVHGAPDIDIESLVDRRAMRFHGR----GTAWNHIAMDQAIADAGLTEEEVS 115
Query: 124 GSKTAIFAGVSTADYKDILNEA---RHKGLVKSLAEPF--PFMIAN----RVSYLFNFHG 174
+T I G + I++ A R KG + PF P +++ ++ F G
Sbjct: 116 NERTGIIMGSGGPSTRTIVDSADITREKGPKR--VGPFAVPKAMSSTASATLATFFKIKG 173
Query: 175 PSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLS--ENG 232
+ I +AC++S I A E + D AGG L +++ G +S N
Sbjct: 174 INYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWT-LSVLFDAMGAMSSKYND 232
Query: 233 R----CMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSP-- 286
+D+ +G+V + G GV++L+ L+ A+ IYG E G ++S
Sbjct: 233 TPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYG------EIVGYGATSDGY 286
Query: 287 --TSPN----MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSEL 340
+P+ + K L V I+YI H T T GD E+ ++ F
Sbjct: 287 DMVAPSGEGAIRCMKMALSTV-------TSKIDYINPHATSTPAGDAPEIEAIRQIFGA- 338
Query: 341 HEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLK 400
+ P + + K+ GH A+GV I LLM++ I + H++ +
Sbjct: 339 GDV------CPP--IAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDPAFA 390
Query: 401 -LDNTPFYLVNKTCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEYR 446
+ ++ SFG GG+N ++ + Y+
Sbjct: 391 DMPIVR---------------KRIDNVQLNTVLSNSFGFGGTNATLVFQRYQ 427
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 109 bits (274), Expect = 6e-26
Identities = 105/392 (26%), Positives = 155/392 (39%), Gaps = 71/392 (18%)
Query: 82 FDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVSTADYKDI 141
D + + E +D ++ + ALEDAG P L + G +
Sbjct: 54 VDPGAY-LDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTGIGGMETW 112
Query: 142 LNEARHKGLVKSLAE---PF--PFMIAN----RVSYLFNFHGPSEVIDTACSSSLIAINR 192
EA+ + ++ PF P MIAN ++ + F GPS + TAC++ A+
Sbjct: 113 --EAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGS 170
Query: 193 AIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSE-----NGRCMTFDQRANGY 244
A+ + L DL LAGG +P + I +A LS F +G+
Sbjct: 171 ALRMIQLGEADLVLAGGTEAAITP-MAIGAFAVMRA--LSTRNEEPEKASRPFTLSRDGF 227
Query: 245 VRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSP---TSPN------MLAQK 295
V EG GV++L+ ++A IY G G S+ T P+ LA
Sbjct: 228 VMGEGAGVLVLEAYEHAKKRGARIYAELVG-----FGRSADAHHITEPHPEGKGAALAMA 282
Query: 296 QLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGL 355
+ L + A I P + YI AHGT T +GD EV +K F + H + +
Sbjct: 283 RAL----KDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGD-HA-KRLM-------V 329
Query: 356 GSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCDW 415
S K+ IGHL A+G + I + L + IP +L+ P+ L LD P
Sbjct: 330 SSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVP----E----- 380
Query: 416 IQLDNNIPRRAGVS-----SFGVGGSNVHVII 442
PR A V SF GG N +
Sbjct: 381 -------PREAKVDYALSNSFAFGGHNAVLAF 405
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 107 bits (270), Expect = 3e-25
Identities = 102/472 (21%), Positives = 173/472 (36%), Gaps = 94/472 (19%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNE---DAITEVPTSRWDWKAIYGDPHLESGKTKVKWG 73
+ GIG P W++L + + K + G V+
Sbjct: 28 VTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAK-VGGT---------VQDV 77
Query: 74 GFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGY-PPSKLSGSKTAIFAG 132
+ FD + E MD +++ + AL +AG+ P ++ +TA
Sbjct: 78 AEDPEGG-FDPERS-VPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVA 135
Query: 133 V------STADYKDILNEARHKGLVK-SLAEPF--PFMIAN----RVSYLFNFHGPSEVI 179
A+ I +G+ + S PF PF ++N ++S F GP
Sbjct: 136 SGIGGFPGLAEAVRIGET---RGVRRLS---PFTIPFFLSNLAAGQISIKHRFRGPLGCP 189
Query: 180 DTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSENGR--- 233
TAC++S+ AI A+ + D+ LAGG +++ +++A LS
Sbjct: 190 VTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDK-VSLGGFAAARA--LSTGFSEEP 246
Query: 234 ---CMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSP---T 287
FD+ +G+V EG +++++ L +A+ G G ++ T
Sbjct: 247 VRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIG-----YGTTADAYHMT 301
Query: 288 SPN------MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELH 341
+ M A K L R ++ P ++Y+ AH T T +GD E+ LK+ F
Sbjct: 302 AGPDDGSGAMRAMKLAL----RMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGV-G 356
Query: 342 EYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKL 401
+ S K+ GHL A+G I +L L+ +PG +L+ P+
Sbjct: 357 AGPA---------ISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDP---- 403
Query: 402 DNTPFYLVNKTCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEYRKN 448
D + L R V FG GG N V+ Y +
Sbjct: 404 ----------AADGLDLIGPAARHVPVEIALSNGFGFGGVNASVLFRRYPSD 445
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 106 bits (268), Expect = 3e-25
Identities = 80/413 (19%), Positives = 149/413 (36%), Gaps = 89/413 (21%)
Query: 77 YDADCFDANFFG---------ISPAEAEVMDPQLRLFIETTWA----ALEDAGYPPSKL- 122
++ +G I M + A+ DAG P
Sbjct: 39 LKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSD----ASIYAFLSMEQAIADAGLSPEAYQ 94
Query: 123 SGSKTAIFAGVSTADYKDILNEA----RHKGLVKSLAEPF--PFMIAN----RVSYLFNF 172
+ + + AG + + A +GL P+ +A+ ++ F
Sbjct: 95 NNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKA--VGPYVVTKAMASGVSACLATPFKI 152
Query: 173 HGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSENG 232
HG + I +AC++S I A+E + L D+ AGG L + G LS
Sbjct: 153 HGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE-MACEFDAMGALSTKY 211
Query: 233 R------CMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSP 286
T+D +G+V + G G+++++ L++A+ HIY E G ++S
Sbjct: 212 NDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYA------EIVGYGATSD 265
Query: 287 ----TSPN----MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFS 338
+P+ + K + + I+Y+ +HGT T +GD E+ ++ F
Sbjct: 266 GADMVAPSGEGAVRCMKMAM----HGVDTP---IDYLNSHGTSTPVGDVKELAAIREVFG 318
Query: 339 ELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSY 398
+ + + KA GH A+GV I LLML++ I + +++ +
Sbjct: 319 D-KSPA----------ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQ 367
Query: 399 LKLDNTPFYLVNKTCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEYR 446
N ++ SFG GG+N +++ + +
Sbjct: 368 AAGLNIV---------------TETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 106 bits (268), Expect = 5e-25
Identities = 90/465 (19%), Positives = 162/465 (34%), Gaps = 98/465 (21%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNE---DAITEVPTSRWDWKAIYGDPHLESGKTKVKWG 73
+ GI + + W+ L + + + + +D V+ G
Sbjct: 32 VTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFDLP--------------VRIG 77
Query: 74 GFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGV 133
G L + + + ++ E M R+ + E+AG P + +I G+
Sbjct: 78 GHLLE----EFDHQ-LTRIELRRMGYLQRMSTVLSRRLWENAGSPEVDTNRLMVSIGTGL 132
Query: 134 ----STADYKDILNEARHKGLVK-SLAEPF--PFMIAN----RVSYLFNFHGPSEVIDTA 182
D + +G+ S P + N V + +A
Sbjct: 133 GSAEELVFSYDDMRA---RGMKAVS---PLTVQKYMPNGAAAAVGLERHAKAGVMTPVSA 186
Query: 183 CSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSEN----GRCM 235
C+S AI RA + + L D A+ GGV + IA + + + N G C
Sbjct: 187 CASGAEAIARAWQQIVLGEADAAICGGVETRIEA-VPIAGFAQMRIVMSTNNDDPAGACR 245
Query: 236 TFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSS----PTSPN- 290
FD+ +G+V EG ++L++ ++A +I G +S +P+
Sbjct: 246 PFDRDRDGFVFGEGGALLLIETEEHAKARGANILA------RIMGASITSDGFHMVAPDP 299
Query: 291 -----MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYK 345
A + + + A + P I+++ AH TGT++GD E + +A +
Sbjct: 300 NGERAGHAITRAI----QLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGG----NR 351
Query: 346 TPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTP 405
+ + K+ +GH A G + I +L L+ + IP +L + + LD
Sbjct: 352 PA-------VYAPKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVA 404
Query: 406 FYLVNKTCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEY 445
PR SFG GG NV + Y
Sbjct: 405 ---------------GEPRPGNYRYAINNSFGFGGHNVAIAFGRY 434
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 104 bits (262), Expect = 2e-24
Identities = 91/466 (19%), Positives = 154/466 (33%), Gaps = 102/466 (21%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNE---DAITEVPTSRWDWKAIYGDPHLESGKTKVKWG 73
+ + S +I W+ L E A+ + ++WD VK G
Sbjct: 16 VTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTKWDLA--------------VKIG 61
Query: 74 GFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGV 133
G L D + + + M R+ E AG P + G+
Sbjct: 62 GHLKD----PVDSH-MGRLDMRRMSYVQRMGKLLGGQLWESAGSPEVDPDRFAVVVGTGL 116
Query: 134 ----STADYKDILNEARHKGLVK-SLAEPF--PFMIAN----RVSYLFNFHGPSEVIDTA 182
+ D++N G K S P ++ N + +A
Sbjct: 117 GGAERIVESYDLMNA---GGPRKVS---PLAVQMIMPNGAAAVIGLQLGARAGVMTPVSA 170
Query: 183 CSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSEN-----GRC 234
CSS AI A + + + D+A+ GGV + IA +A +S
Sbjct: 171 CSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEA-LPIAAFSMMRA--MSTRNDEPERAS 227
Query: 235 MTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSS----PTSPN 290
FD+ +G+V E ++L++ ++A G +S +P
Sbjct: 228 RPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLA------RLLGAGITSDAFHMVAPA 281
Query: 291 ------MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYY 344
A + L A ++P I+++ AHGT T +GD E N ++ A +
Sbjct: 282 ADGVRAGRAMTRSL----ELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCD----- 332
Query: 345 KTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNT 404
+ + K+ +GH A G + + +L L+ IP + + P+ + LD
Sbjct: 333 -------QAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVV 385
Query: 405 PFYLVNKTCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEY 445
PR SFG GG NV + Y
Sbjct: 386 A---------------GEPRYGDYRYAVNNSFGFGGHNVALAFGRY 416
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 103 bits (260), Expect = 4e-24
Identities = 111/470 (23%), Positives = 180/470 (38%), Gaps = 98/470 (20%)
Query: 17 IIGIGGKFPGSKNINDFWRKLENNE---DAITEVPTSRWDWKAIYGDPHLESGKTKVKWG 73
I G+G P + + + W++L E +TE + I + G
Sbjct: 14 ITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQ-IACR---------IPVG 63
Query: 74 GFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSK---TAIF 130
F+ + + P E +DP + + AL+DAG+ P I
Sbjct: 64 D--GTNGTFNPDLH-MDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIG 120
Query: 131 AGV----STADYKDILNEARHKGLVK-SLAEPF--PFMIAN----RVSYLFNFHGPSEVI 179
+G+ + L + KG + S PF P + N VS GP+ +
Sbjct: 121 SGIGGIEGIVEAGYTLRD---KGPRRIS---PFFIPGRLINLASGHVSIKHKLRGPNHSV 174
Query: 180 DTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIA---SSKAGLLSENGR--- 233
TAC++ AI A + + D+ +AGG S I++A + KA LS R
Sbjct: 175 VTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSR-ISLAGFAACKA--LS-TERNDD 230
Query: 234 ----CMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSP--- 286
+D+ +G+V EG G+++L+ L++A+ IY G G S
Sbjct: 231 PTAASRPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIG-----YGMSGDAFHI 285
Query: 287 TSPN------MLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSEL 340
T+P L +RA I P I+YI AHGT T + D IE+ ++ E
Sbjct: 286 TAPTESGEGAQRCMVAAL----KRAGIVPDEIDYINAHGTST-MADTIELGAVERVVGE- 339
Query: 341 HEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLK 400
K + S K++IGHL A+G + L ++ P +L P + +
Sbjct: 340 AA-AKIS-------MSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQTR 391
Query: 401 LDNTPFYLVNKTCDWIQLDNNIPRRAGVS-----SFGVGGSNVHVIIEEY 445
+D P + PR + SFG GG+N +++ Y
Sbjct: 392 IDLVP---------------HKPRERKIDVALSNSFGFGGTNASLVLRRY 426
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 96.9 bits (241), Expect = 5e-21
Identities = 48/299 (16%), Positives = 87/299 (29%), Gaps = 51/299 (17%)
Query: 82 FDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYP----------PSKLSGSKTAIFA 131
+DA +G+ + +DP + + AL +G S++ +
Sbjct: 1168 WDARRYGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVG 1227
Query: 132 GVSTADYKDILNEARHKGLVKSLAEPF--PFMIAN----RVSYLFNFHGPSEVIDTACSS 185
G S + + + V+ + L + GP + AC++
Sbjct: 1228 GTSA--LRGMYKDRYLDKPVQK---DILQESFVNTMAAWVNMLLLSSTGPIKTPVGACAT 1282
Query: 186 SLIAINRAIESLHLKNCDLALAGGVNILASPNITIAS---------SKAGLLSENGR--- 233
++ +++ +++ + L GG S S A GR
Sbjct: 1283 AVESLDVGYDTIMQGKARVCLVGG----FDDFQEEGSYEFANMGATSNAKEEFARGREPG 1338
Query: 234 --CMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNM 291
NG++ S+G GV ++ + A+ IYGI S +P
Sbjct: 1339 EMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQ 1398
Query: 292 LAQKQLLIDVYRRANINPYTINY-----------IEAHGTGTKLGDPIEVNGLKSAFSE 339
I Y I+ L EV +KS SE
Sbjct: 1399 GVLTTAREKS-GNFPSPLLDIKYRRRQLELRRQQIKQWKESEYLYLQEEVAAIKSQRSE 1456
Score = 75.4 bits (185), Expect = 3e-14
Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 13/141 (9%)
Query: 303 RRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANI 362
+ + HGT T D E + + L +L K
Sbjct: 1508 ATWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVL-----GIFQKYLT 1562
Query: 363 GHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNNI 422
GH + A+G + L +L +PGN + + ++ F + I+ D
Sbjct: 1563 GHPKGAAGAWMLNGCLQVLNTGIVPGNRNADNVDKVME----QFDYIVYPSRSIKTD--- 1615
Query: 423 PRRAGVS-SFGVGGSNVHVII 442
+A SFG G I
Sbjct: 1616 GIKAFSVTSFGFGQKGAQAIG 1636
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 84.3 bits (208), Expect = 4e-17
Identities = 42/246 (17%), Positives = 65/246 (26%), Gaps = 24/246 (9%)
Query: 208 GGVNILASPNITIASSKAGLLSENGRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDND- 266
G+ A + + + L+ R R + LK I D
Sbjct: 1423 KGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQ 1482
Query: 267 ---------HIYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEA 317
I+ + L + +
Sbjct: 1483 NEFLLERTREIHNEAESQL-RAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASF 1541
Query: 318 HGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKV 377
HGT TK D E + L P++ K GH + A+G +
Sbjct: 1542 HGTSTKANDKNESATINEMMKHLGRSEGNPVI-----GVFQKFLTGHPKGAAGAWMMNGA 1596
Query: 378 LLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNNIPRRAGVS-SFGVGGS 436
L +L IPGN + + L+ F V ++ D RA SFG G
Sbjct: 1597 LQILNSGIIPGNRNADNVDKILE----QFEYVLYPSKTLKTD---GVRAVSITSFGFGQK 1649
Query: 437 NVHVII 442
I+
Sbjct: 1650 GGQAIV 1655
Score = 80.4 bits (198), Expect = 7e-16
Identities = 48/315 (15%), Positives = 93/315 (29%), Gaps = 70/315 (22%)
Query: 82 FDANFFGISPAEAEVMDPQLRLFIETTWA------ALEDAGYP----------PSKLSGS 125
++A +GIS +DP + A +G S++
Sbjct: 1193 WNAKTYGISDDIISQVDP----ITL--FVLVSVVEAFIASGITDPYEMYKYVHVSEVGNC 1246
Query: 126 KTAIFAGVSTADYKDILNEARHKGLVKSLAEPF--PFMIAN----RVSYLFNFHGPSEVI 179
+ GVS + + + V++ I L + GP +
Sbjct: 1247 SGSGMGGVSA--LRGMFKDRFKDEPVQN---DILQESFINTMSAWVNMLLISSSGPIKTP 1301
Query: 180 DTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNIT-IASSKAGLLS----ENGRC 234
AC++S+ +++ +E++ + + GG + + KA S E
Sbjct: 1302 VGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKA--TSNTLEEFEHG 1359
Query: 235 MT-------FDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENH-GGHSSSP 286
T NG++ ++G G+ ++ A+ IYGI S P
Sbjct: 1360 RTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVP 1419
Query: 287 -------------------TSPNMLAQKQLLIDVYRRANIN---PYTINYIEAHGTGTKL 324
SPN+ + + V R A I + ++
Sbjct: 1420 APGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPS 1479
Query: 325 GDPIEVNGLKSAFSE 339
D E ++
Sbjct: 1480 EDQNEFLLERTREIH 1494
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 8e-10
Identities = 99/620 (15%), Positives = 191/620 (30%), Gaps = 184/620 (29%)
Query: 29 NINDFWRKLENN--EDAITEVPTSRWDWKAIYGDPHLESGKTKVKW----------GGFL 76
+ F + +D + + + I SG ++ W F+
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 77 YDADCFDANFFGISPAEAEVMDPQL--RLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
+ + F +SP + E P + R++IE L + +K + S+ + +
Sbjct: 84 EEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 135 TADYKDILNEAR-HKGLV--------KS-LA----------EPFPFMIANRVSYLFNF-- 172
A L E R K ++ K+ +A F ++ +L N
Sbjct: 142 QA-----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF----KIFWL-NLKN 191
Query: 173 -HGPSEVID-------------TACSSSLIAINRAIESLH-----------LKNCDL--- 204
+ P V++ T+ S I I S+ +NC L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 205 ---------ALAGGVNILASPNITIASSKAGLLSENGRC-MTFDQRANGYVRSEGVGVIL 254
A IL T LS ++ D + E +L
Sbjct: 252 NVQNAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LL 307
Query: 255 LKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINY 314
LK L D E + P +++A+ + D T +
Sbjct: 308 LKYLDCRPQDLPR---------EVLTTN---PRRLSIIAE--SIRD-------GLATWDN 346
Query: 315 IEAHGTGTKLGDPIE--VNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVI 372
+ H KL IE +N L+ A E + + + A+I
Sbjct: 347 WK-HVNCDKLTTIIESSLNVLEPA--EYRKMFD------RLSVFPPSAHI---------- 387
Query: 373 GVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCDW---------IQLDNNIP 423
+L ++ + I + + + N K LV K I L+ +
Sbjct: 388 -PTILLSLIWFDVIKSDVMV-VVNKLHKYS-----LVEK--QPKESTISIPSIYLELKVK 438
Query: 424 RRAGVSSFGVGGSNVH-VIIEEYRKNIKTKYIKENTVLVRI-------I---MLSAKTKK 472
+ +H I++ Y NI + ++ + + I + + + +
Sbjct: 439 LENEYA--------LHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 473 SLKEYVILLLEF------IIKEKNNFSLC-DLAYTLQVGREAMKYRLAIYVNS--YEDLI 523
+ + ++ L+F I + ++ + TLQ + Y+ I N YE L+
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK---FYKPYICDNDPKYERLV 545
Query: 524 KKLQDYLNKKITNGIYTNFS 543
+ D+L K N I + ++
Sbjct: 546 NAILDFLPKIEENLICSKYT 565
Score = 56.0 bits (134), Expect = 3e-08
Identities = 64/534 (11%), Positives = 142/534 (26%), Gaps = 155/534 (29%)
Query: 53 DWKAIYGDPHLESGKT----KVKWGGFLYDADCFDANFFGI-------SPAEAEVMDPQL 101
I G SGKT V F I + V++
Sbjct: 151 KNVLIDGVLG--SGKTWVALDV-----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 102 RLF--IETTWAALEDAGY-PPSKLSGSKTAIFAGVSTADYKD---ILNEARHKGLVKSLA 155
+L I+ W + D ++ + + + + Y++ +L ++ +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-- 261
Query: 156 EPFPF----MIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVN 211
F ++ R + +F + + + + E L L
Sbjct: 262 --FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSL----LLKYLDCR 314
Query: 212 ILASPN--ITIASSKAGLLSENGRCMTFDQRANGYVRSEGVGVILLKPLKNAI------- 262
P +T + +++E+ R +G + + L I
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIR--------DGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 263 --IDNDHIY---GIFRGN-------FENHGGHSSSPTSPNMLAQ--KQLLIDVYRRANIN 308
+ ++ +F + ++ + K L++ ++ +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKES 424
Query: 309 PYTIN--YIEAHGTGTKLGDPIEVNGLKSAFSELH----EYYKTPLLKPYCGLGSVKAN- 361
+I Y+E LH ++Y P K + +
Sbjct: 425 TISIPSIYLELKVKLENE-------------YALHRSIVDHYNIP--KTFDSDDLIPPYL 469
Query: 362 -------IGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD 414
IGH HLK ++ ++
Sbjct: 470 DQYFYSHIGH--------------------------HLKNIEHPERMTLFRMVFLD--FR 501
Query: 415 WIQLDNNIPRRAGVSSFGVGGS-NVHVIIEEYRKNIKTKYIKENTVLVRIIMLSAKTKKS 473
+++ I R + G N ++ Y+ YI +N
Sbjct: 502 FLE--QKI-RHDSTAWNASGSILNTLQQLKFYKP-----YICDN-------------DPK 540
Query: 474 LKEYVILLLEFIIKEKNNFSLCDLAYTLQVGREAMKYRLAIYVNSYEDLIKKLQ 527
+ V +L+F+ K + N L++ A+ +E+ K++Q
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRI---ALMAEDEAI---FEEAHKQVQ 588
Score = 38.7 bits (89), Expect = 0.006
Identities = 60/351 (17%), Positives = 96/351 (27%), Gaps = 115/351 (32%)
Query: 3 KLNSL--EDIDTNTIAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGD 60
+ L E + TN + I D W+ + N D +T + S +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLN------- 364
Query: 61 PHLESGKTKVKWGGFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAAL--EDAGYP 118
LE + + FD + P A + L L W + D
Sbjct: 365 -VLEPAEYR----------KMFDR--LSVFPPSAHIPTILLSLI----WFDVIKSDVMVV 407
Query: 119 PSKLSGSKTAIFAGVSTADYK--DILNEAR---------HKGLVKSLAEPFPF----MIA 163
+KL + + + I E + H+ +V P F +I
Sbjct: 408 VNKLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 164 NRV-SYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIAS 222
+ Y ++ G HLKN +
Sbjct: 467 PYLDQYFYSHIG----------------------HHLKNIEHP----------------- 487
Query: 223 SKAGLLSE---NGRCMTFDQ---RANGYVRSEGVGVIL-----LKPLKNAIIDNDHIYGI 271
+ L + R F + R + + G IL LK K I DND Y
Sbjct: 488 ERMTLFRMVFLDFR---FLEQKIRHDSTAWN-ASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 272 FRG---NF-ENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAH 318
+F N++ K D+ R A + + EAH
Sbjct: 544 LVNAILDFLPKIE--------ENLICSKYT--DLLRIALMAEDEAIFEEAH 584
Score = 29.1 bits (64), Expect = 5.1
Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 26/112 (23%)
Query: 438 VHVIIEEYRKNIKTKYIKENTVLVRIIMLSAKTKKSLKEYVILLLEFIIKEKNNFSLCD- 496
+ V + + N K +++ + + I+ +K+ + II K+ S
Sbjct: 22 LSVFEDAFVDNFDCKDVQD---MPKSIL----SKEEIDH--------IIMSKDAVSGTLR 66
Query: 497 LAYTLQVGREAMKYRLAIYVNS-----YEDLIKKLQDYLNKKITNGIYTNFS 543
L +TL +E M + +V Y+ L+ ++ ++ + + +
Sbjct: 67 LFWTLLSKQEEMVQK---FVEEVLRINYKFLMSPIKT--EQRQPSMMTRMYI 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 61/344 (17%), Positives = 92/344 (26%), Gaps = 132/344 (38%)
Query: 76 LYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALED--AGYPPSKLSGSKTAIFAGV 133
LY S A +V + F +T ++ D P + T F G
Sbjct: 1635 LYKT----------SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL-----TIHFGGE 1679
Query: 134 S----TADYKDILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVID--------- 180
+Y ++ E G +K+ E F N S + F ++
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKT--EKI-FKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 181 TACSSSLIAINRAIESLHLKNCDLALAG---G-VNILASPNITIASSKAGLLSENGRCMT 236
T A ++S L D AG G LAS A ++S
Sbjct: 1737 TLME---KAAFEDLKSKGLIPADATFAGHSLGEYAALASL--------ADVMS------- 1778
Query: 237 FDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNMLAQKQ 296
+ V ++ +RG + + +
Sbjct: 1779 IES-----------LVEVVF---------------YRGMTMQ-----------VAVPRDE 1801
Query: 297 LLIDVYRRANINPYTI----------NYIEAHGTGTKLGDPIE-VNGLKSAFSELHEYYK 345
L Y INP + +E G T G +E VN Y
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT--GWLVEIVN------------YN 1847
Query: 346 TPLLKPYCGLGS--VKANIGHLEAASGVIGVIKVLLMLKYKKIP 387
V A G L A + V VL +K +KI
Sbjct: 1848 VE--------NQQYVAA--GDLRA---LDTVTNVLNFIKLQKID 1878
Score = 52.4 bits (125), Expect = 4e-07
Identities = 72/451 (15%), Positives = 129/451 (28%), Gaps = 148/451 (32%)
Query: 159 PFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNI 218
P ++ HG E L+ + L+ IL P
Sbjct: 8 PLTLS---------HGSLEH------VLLVPTASFFIASQLQEQFNK------ILPEPTE 46
Query: 219 TIA-----SSKAGLLSENGRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFR 273
A ++ A L+ + F GYV S ++P K D + +
Sbjct: 47 GFAADDEPTTPAELVGK------F----LGYVSSL------VEPSKVG--QFDQVLNLCL 88
Query: 274 GNFENH--GG---HS----SSPTSPNMLAQKQLLIDVYRRANI---NPYTINY----IEA 317
FEN G H+ + L + + LI Y A I P+ A
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 318 HGTG-TKL-------GDPIEVNGLKSAFSELHEYYKT--PLLKPYCGLGSVKANIGHLEA 367
G G +L G+ + F EL + Y+T L+ ++
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDY------FEELRDLYQTYHVLVGDL------------IKF 190
Query: 368 ASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNKTCD---WIQLDNNIP- 423
++ + L L LD + + + W++ +N P
Sbjct: 191 SA------ETLSEL---------------IRTTLDAEKVF--TQGLNILEWLENPSNTPD 227
Query: 424 ----RRAGVSSFGVG-GSNVHVII---------EEYRKNIKTKYIKENTVLVRIIMLSAK 469
+S +G H ++ E R +K ++ + +
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 470 TKKSLKEYVILLLE--FII----KE---KNNFSLCDLAYTLQVGREAMKYRLAIYVNSYE 520
+ +S V + F I E + L +L+ L+I + E
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 521 DL---IKKLQDYL--NKKI----TNGIYTNF 542
+ + K +L K++ NG N
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNG-AKNL 377
Score = 50.0 bits (119), Expect = 2e-06
Identities = 61/380 (16%), Positives = 123/380 (32%), Gaps = 146/380 (38%)
Query: 4 LNSLEDIDTNTIAIIGIGGKFPGSKNINDFW---RKL------------ENNEDAITEVP 48
++ + + +AI F G N +D++ R L + + + ++E+
Sbjct: 146 FRAVGEGNAQLVAI------FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 49 TSRWDWKAIYGDPHLESGKTKVKWGGFLYDADCF-DANFFGISPAEAEVMDP-----QLR 102
+ D + ++ G ++W L + D ++ + P QL
Sbjct: 200 RTTLDAEKVFTQ-----GLNILEW---LENPSNTPDKDYL----LSIPISCPLIGVIQLA 247
Query: 103 LFIETTWAALEDAGYPPSKLSGSKTAIFAGVSTADYKDILNEARHKGLVKSLA------- 155
++ + G+ P +L + G + +GLV ++A
Sbjct: 248 HYV----VTAKLLGFTPGELR----SYLKGATG----------HSQGLVTAVAIAETDSW 289
Query: 156 EPFPFMIANRVSYLFNFHG-------------PSEVIDT------------ACSS-SLIA 189
E F + ++ LF F G PS + D+ + S+ +
Sbjct: 290 ESFFVSVRKAITVLF-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 190 INRAIESL--HL---KNCDLALAGGVN-----ILASP-------NITIASSKAGLLSENG 232
+ + HL K +++L VN +++ P N+T+ +KA +
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISL---VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 233 RCMTFDQRA-NGYVR---------SEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGH 282
R + F +R R S LL P + +I+ D + + N
Sbjct: 406 R-IPFSERKLKFSNRFLPVASPFHSH-----LLVPA-SDLINKD----LVKNNVS----- 449
Query: 283 SSSPTSPNMLAQKQLLIDVY 302
K + I VY
Sbjct: 450 ---------FNAKDIQIPVY 460
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 39.2 bits (92), Expect = 0.002
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 466 LSAKTKKSLKEYVILLLEFIIKEKNNFSLCDLAYTLQVG-REAMKYRLAIYVNSYEDLIK 524
A +L + + + L DLA L R + R A V + L+
Sbjct: 8 CGAPDAAALTGLLTRVRAAA-TALSRPELTDLAAGLAAAHRGDVPARFAAAVRDADGLVA 66
Query: 525 KL 526
L
Sbjct: 67 AL 68
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 32.8 bits (76), Expect = 0.29
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 21/101 (20%)
Query: 110 AALEDAGYPPSKLSGSKTAIFAGVSTADYKDILNEARHKGLVKSLAEPFPFMIANRVSYL 169
A++ G P ++ I + N AR L + R
Sbjct: 39 EAVKRGGVEPHEVD---EVILGHCIQRTDE--ANTARTAALAAGFPDTVTGYTIQRQ--- 90
Query: 170 FNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGV 210
CSS + AI A + L ++ +AGGV
Sbjct: 91 -------------CSSGMQAIMSAAMQIQLGVSEVVVAGGV 118
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 31.7 bits (73), Expect = 0.56
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 20/101 (19%)
Query: 110 AALEDAGYPPSKLSGSKTAIFAGVSTADYKDILNEARHKGLVKSLAEPFPFMIANRVSYL 169
++ +G P ++ + A +D N AR L+ NR+
Sbjct: 36 VLVDRSGVPKEEVE---DVYAGCANQAG-EDNRNVARMALLLAGFPVEVAGCTVNRL--- 88
Query: 170 FNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGV 210
C S L A+ +A ++ + + GV
Sbjct: 89 -------------CGSGLEAVAQAARAIWAGEGKVYIGSGV 116
>2uy6_B PAP PILI, PAP fimbrial major pilin protein; donor strand
complementation, PILI/N-terminal extension, pilus
biogenesis, donor-strand exchange; 2.50A {Escherichia
coli} SCOP: b.2.3.2 PDB: 2uy7_B
Length = 163
Score = 30.7 bits (69), Expect = 0.73
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 30/116 (25%)
Query: 171 NFHGPSEVIDTACS-----------------SSLIAINRAIE---SLHLKNCDLALAGGV 210
F+ V+D CS S L A + + L NCD+ G
Sbjct: 12 TFNN--TVVDAPCSISQKSADQSIDFGQLSKSFLEAGGVSKPMDLDIELVNCDITAFKGG 69
Query: 211 NILASPNITIASSKAGLLSENGRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDND 266
N + +A G + G+ +++ KN + D
Sbjct: 70 NGAKKGTVKLAF--------TGPIVNGHSDELDTNGGTGLAIVVQGAGKNVVFDGS 117
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 31.0 bits (71), Expect = 1.1
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 16/69 (23%)
Query: 142 LNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKN 201
+E R E NR CSS L A+ ++
Sbjct: 93 ASECRMAAFYAGFPETVAVRTVNRQ----------------CSSGLQAVADVAAAIKAGF 136
Query: 202 CDLALAGGV 210
D+ + G+
Sbjct: 137 YDIGIGAGL 145
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 30.6 bits (70), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 179 IDTACSSSLIAINRAIESLHLKNCDLALAGGV 210
++ C+S L A+N A + + DL LAGGV
Sbjct: 92 LNRFCASGLEAVNTAAQKVRSGWDDLVLAGGV 123
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 30.5 bits (70), Expect = 1.5
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 175 PSEV----IDTACSSSLIAINRAIESLHLKNCDLALAGGV 210
P V ++ C SS+ A++ A + + + L GGV
Sbjct: 79 PHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGV 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.5
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 393 KIPNSYLKL---DNTPFYLVNKTCD 414
K+ S LKL D+ P + T +
Sbjct: 24 KLQAS-LKLYADDSAPALAIKATME 47
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 30.6 bits (70), Expect = 1.6
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 16/69 (23%)
Query: 142 LNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKN 201
AR + + E P NR CSS L A+ + +
Sbjct: 92 AIMARIAQFLSDIPETVPLSTVNRQ----------------CSSGLQAVASIAGGIRNGS 135
Query: 202 CDLALAGGV 210
D+ +A GV
Sbjct: 136 YDIGMACGV 144
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 30.2 bits (69), Expect = 1.8
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 175 PSEV----IDTACSSSLIAINRAIESLHLKNCDLALAGGV 210
P + C SS+ A++ A +++ N D+ + GGV
Sbjct: 82 PHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGV 121
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 30.2 bits (69), Expect = 1.9
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 16/69 (23%)
Query: 142 LNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKN 201
E R L + PF+ NR CSS L A+N + +
Sbjct: 76 ATEHRAACLASGIPYSTPFVALNRQ----------------CSSGLTAVNDIANKIKVGQ 119
Query: 202 CDLALAGGV 210
D+ LA GV
Sbjct: 120 IDIGLALGV 128
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix,
ARAC family, activator, DNA-binding transcription,
transcription regulation; HET: PAM; 1.90A {Vibrio
cholerae}
Length = 276
Score = 29.9 bits (67), Expect = 2.2
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 1/100 (1%)
Query: 439 HVIIEEYRKNIKTKYIKENTVLVRIIMLSAKTKKSLKEYVILLLEFIIKEKNNFSLCDLA 498
I + I + N + L + V+ + +E N
Sbjct: 88 DSFIRSLKSYILGDLMIRN-LYSENKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKV 146
Query: 499 YTLQVGREAMKYRLAIYVNSYEDLIKKLQDYLNKKITNGI 538
+ + K +I++ D ++K+ + IT
Sbjct: 147 FFSGFFSKVEKKYNSIFITDDLDAMEKISCLVKSDITRNW 186
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG,
protein structure initiative, midwest center for STRU
genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Length = 131
Score = 27.7 bits (62), Expect = 5.4
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 485 IIKEKNNFSLCDLAYTLQVGREAMKYRLAIYVNSYEDLIKKLQDYLNKKI 534
I + L D YTL + + + + +D++K ++ + I
Sbjct: 45 FITKNRRLFLTDSRYTLIAKQSVHGFDIIESKDPLKDIVKFVEVDKLETI 94
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 188
Score = 28.1 bits (62), Expect = 5.4
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 208 GGVNILASPNITIA------SSKAGLLSENGRCMTFDQRANGYVRSEGVGVILLKPLKNA 261
V IL P + + +++ +L G+ +TFDQ A +G G +LL +
Sbjct: 88 DDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLAL--ESPKGRGTVLLSGPRKG 145
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_O
Length = 121
Score = 27.6 bits (61), Expect = 5.5
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 186 SLIAINRAIESLHLKNCDLALAGGV----NILASPNITIA------SSKAGLLSENGRCM 235
S+ I RA++ N + + G V I P T+A ++A ++ G C+
Sbjct: 43 SVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECI 102
Query: 236 TFDQRANGYVRSEGVGVILLK 256
T DQ A +G ++L+
Sbjct: 103 TLDQLAV--RAPKGQNTLILR 121
>2jty_A Type-1A pilin, type-1 fimbrial protein, A chain; protein/PILI/FIM,
cell projection, fimbrium, chimera, chaper structural
protein; NMR {Escherichia coli}
Length = 184
Score = 27.8 bits (62), Expect = 6.2
Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 33/117 (28%)
Query: 171 NFHGPSEVIDTACSSSLIAINRAIE---------------------SLHLKNCDLALAGG 209
+F G EV++ AC+ ++++ ++ ++ L +CD +A
Sbjct: 11 HFKG--EVVNAACAVDAGSVDQTVQLGQVRTASLAQEGATSSAVGFNIQLNDCDTNVASK 68
Query: 210 VNILASPNITIASSKAGLLSENGRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDND 266
+ I + +L+ + + VGV +L A+ +
Sbjct: 69 AAVAFLGT-AIDAGHTNVLALQS---------SAAGSATNVGVQILDRTGAALTLDG 115
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 28.2 bits (64), Expect = 6.8
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 21/101 (20%)
Query: 110 AALEDAGYPPSKLSGSKTAIFAGVSTADYKDILNEARHKGLVKSLAEPFPFMIANRVSYL 169
A++ A P + ++ GV TA N AR L + P M N V
Sbjct: 41 EAIKRANITPDMID---ESLLGGVLTAGLG--QNIARQIALGAGIPVEKPAMTINIV--- 92
Query: 170 FNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGV 210
C S L +++ A + + L + D+ L GG
Sbjct: 93 -------------CGSGLRSVSMASQLIALGDADIMLVGGA 120
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding;
2.29A {Homo sapiens}
Length = 1128
Score = 28.6 bits (63), Expect = 7.2
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 478 VILLLEFIIKEKNNFSLCDLAYTLQVGREAMKY-RLAIYVNSYEDLIKKLQDYLN 531
+++LL I + K L + A+ + G +Y RL + YE+ +KK+ +
Sbjct: 143 LMILLSRIEERKAIIGLYNYAHEMTHGASDREYPRLGQMIVDYENPLKKMMEEFV 197
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_R
Length = 188
Score = 27.7 bits (61), Expect = 7.3
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 206 LAGGVNILASPNITIA------SSKAGLLSENGRCMTFDQRANGYVRSEGVGVILLKPLK 259
+ + I P + + +++A +++ G C+TFDQ A G ILL+ K
Sbjct: 86 ITDDMRIQEVPAMKVTALRFTETARARIINAGGECLTFDQLAL--RAPTGENTILLRGPK 143
Query: 260 NA 261
NA
Sbjct: 144 NA 145
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R
3o58_R 3o5h_R 3u5e_Q 3u5i_Q
Length = 186
Score = 27.7 bits (61), Expect = 8.4
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 208 GGVNILASPNITIA------SSKAGLLSENGRCMTFDQRANGYVRSEGVGVILLKPLKNA 261
I P T+A ++A ++ G C+T DQ A +G ++L+ +N+
Sbjct: 89 DDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRA--PKGQNTLILRGPRNS 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.404
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,590,743
Number of extensions: 540659
Number of successful extensions: 1390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1269
Number of HSP's successfully gapped: 76
Length of query: 545
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 447
Effective length of database: 3,965,535
Effective search space: 1772594145
Effective search space used: 1772594145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)