RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy613
(545 letters)
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 186 bits (472), Expect = 7e-56
Identities = 52/262 (19%), Positives = 91/262 (34%), Gaps = 30/262 (11%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ + G+G P F + + + + R+D A+
Sbjct: 4 VVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPIT--RFDASALPVRIA------------ 49
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
A+ + E +D ++ + ALEDAG P L + G
Sbjct: 50 ----AEVDVDPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTG 105
Query: 135 TADYKDILNEARHK-GLVKSLAEPF------PFMIANRVSYLFNFHGPSEVIDTACSSSL 187
+ ++R + PF M + ++ + F GPS + TAC++
Sbjct: 106 IGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGA 165
Query: 188 IAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSEN-----GRCMTFDQRAN 242
A+ A+ + L DL LAGG +P A + LS F +
Sbjct: 166 DALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRD 225
Query: 243 GYVRSEGVGVILLKPLKNAIID 264
G+V EG GV++L+ ++A
Sbjct: 226 GFVMGEGAGVLVLEAYEHAKKR 247
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 175 bits (444), Expect = 7e-52
Identities = 49/262 (18%), Positives = 98/262 (37%), Gaps = 29/262 (11%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ + G+G P + W+ L + I+ + +D A K+ G
Sbjct: 4 VVVTGLGMLSPVGNTVESTWKALLAGQSGISLID--HFDTSAYA-----------TKFAG 50
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
+ D +C D E MD ++ I A++D+G ++ + ++ G
Sbjct: 51 LVKDFNCEDIISR----KEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSG 106
Query: 135 TADYK-------DILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSL 187
++N K + M+A ++ ++ GPS I TA +S +
Sbjct: 107 IGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGV 166
Query: 188 IAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSEN-----GRCMTFDQRAN 242
I A + + D+ +AGG ++P A LS +D+ +
Sbjct: 167 HNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERD 226
Query: 243 GYVRSEGVGVILLKPLKNAIID 264
G+V +G G+++L+ ++A
Sbjct: 227 GFVLGDGAGMLVLEEYEHAKKR 248
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 158 bits (399), Expect = 6e-46
Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 19/214 (8%)
Query: 232 GRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNM 291
FD +G+V +EG + +L+ +A+ I+ G + + +
Sbjct: 5 HASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADG 64
Query: 292 LAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKP 351
+ + + + I+YI AHG+GT+ D E K A E
Sbjct: 65 REMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHA---------R 115
Query: 352 YCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNK 411
+ S+K+ +GH A G + + +L L++ +P +L+ + LD P +
Sbjct: 116 RTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVPLEARER 175
Query: 412 TCDWIQLDNNIPRRAGVSSFGVGGSNVHVIIEEY 445
R G GG +++ +
Sbjct: 176 K----------LRSVLTVGSGFGGFQSAMVLRDA 199
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 158 bits (399), Expect = 2e-45
Identities = 44/262 (16%), Positives = 87/262 (33%), Gaps = 29/262 (11%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ + G+G P + D+W+ L + I + R+D
Sbjct: 4 VVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPIT--RFDAS---------------DQAC 46
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
+ EA+ MD + + A+ DA ++L+ + + G
Sbjct: 47 RFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIGTG 106
Query: 135 TAD-------YKDILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSL 187
+L++ + + M + + GP+ TAC++
Sbjct: 107 IGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGS 166
Query: 188 IAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSEN-----GRCMTFDQRAN 242
AI A + + GG +P + A LS FD+ +
Sbjct: 167 NAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRD 226
Query: 243 GYVRSEGVGVILLKPLKNAIID 264
G+V EG G+++L+ L++A+
Sbjct: 227 GFVMGEGSGILILEELESALAR 248
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 154 bits (390), Expect = 5e-44
Identities = 51/261 (19%), Positives = 85/261 (32%), Gaps = 28/261 (10%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ + G G P +FW L + I + ++D E
Sbjct: 11 VVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGIT--KFDHSDFDVHNAAE---------- 58
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
+ D + A+ A L+ + +
Sbjct: 59 -----IQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVASG 113
Query: 135 TADYKDILNEA-RHKGLVKSLAEPF------PFMIANRVSYLFNFHGPSEVIDTACSSSL 187
K+I ++ R +P P M + V+ F +G + I+TACSSS
Sbjct: 114 IGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSN 173
Query: 188 IAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSEN----GRCMTFDQRANG 243
AI A S+ D+ L GG +P LS + FD+ NG
Sbjct: 174 DAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNG 233
Query: 244 YVRSEGVGVILLKPLKNAIID 264
+V EG G+++L+ L++A
Sbjct: 234 FVMGEGSGMLVLESLEHAEKR 254
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 153 bits (387), Expect = 2e-43
Identities = 51/268 (19%), Positives = 94/268 (35%), Gaps = 14/268 (5%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGK-TKVKWG 73
+ + G+G P + + WR+L + E I + K+ + L + K
Sbjct: 3 VVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVA 62
Query: 74 GFL---YDADCFDANFFGISPAEAEVMDPQLRLF----IETTWAALEDAGYPPSKLSGSK 126
F+ + FD + S A A + + + W E+ + +S
Sbjct: 63 AFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGG 122
Query: 127 TAIFAGVSTADYKDILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSS 186
+ I + + + + M + VS + F GP+ TAC++
Sbjct: 123 GIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATG 182
Query: 187 LIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSEN------GRCMTFDQR 240
+I A + + D+ +AGG S++ LS FD
Sbjct: 183 AHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCD 242
Query: 241 ANGYVRSEGVGVILLKPLKNAIIDNDHI 268
+G+V EG GVI+L+ ++A I
Sbjct: 243 RDGFVIGEGSGVIVLEEYEHAKRRGAKI 270
>d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 161
Score = 133 bits (335), Expect = 2e-37
Identities = 41/177 (23%), Positives = 64/177 (36%), Gaps = 18/177 (10%)
Query: 268 IYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDP 327
IY G + + + N + + R A I I Y+ AHGT T GD
Sbjct: 2 IYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDK 61
Query: 328 IEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIP 387
E +K+ F E + S K+ GHL A+G + I +L L+ + +P
Sbjct: 62 AEAQAVKTIFGEAA---------SRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVP 112
Query: 388 GNPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNNIPRRAGVSSFGVGGSNVHVIIEE 444
+ LDN + +SFG GG+N +I ++
Sbjct: 113 PTIN---------LDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 160
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 130 bits (327), Expect = 4e-35
Identities = 46/268 (17%), Positives = 86/268 (32%), Gaps = 32/268 (11%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
I G+G N + L IT +
Sbjct: 4 AVITGLGIVSSIGNNQQEVLASLREGRSGITFSQ--ELKDSGMRSHVW------------ 49
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGS-KTAIFAGV 133
+ I M + A+ DAG P + + + AG
Sbjct: 50 ----GNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGS 105
Query: 134 STADYKDILNEARHKGLVKSLAEPFPFMI--------ANRVSYLFNFHGPSEVIDTACSS 185
+ + A + L P+++ + ++ F HG + I +AC++
Sbjct: 106 GGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACAT 165
Query: 186 SLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSEN-----GRCMTFDQR 240
S I A+E + L D+ AGG L + L ++ T+D
Sbjct: 166 SAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAH 225
Query: 241 ANGYVRSEGVGVILLKPLKNAIIDNDHI 268
+G+V + G G+++++ L++A+ HI
Sbjct: 226 RDGFVIAGGGGMVVVEELEHALARGAHI 253
>d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 161
Score = 119 bits (300), Expect = 2e-32
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 19/179 (10%)
Query: 268 IYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDP 327
IYG G + + P+ + + + + + P ++YI AHGT T D
Sbjct: 2 IYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDV 61
Query: 328 IEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIP 387
E +K A + S K+ GHL SG I + ++ + K+P
Sbjct: 62 TETRAIKQALGN---------HAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVP 112
Query: 388 GNPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNNIPRRAGVSSFGVGGSNVHVIIEEYR 446
+L+ P+ LD P A +SFG GG NV + ++Y+
Sbjct: 113 PTINLENPDPECDLDYVPGQSRALI----------VDVALSNSFGFGGHNVTLAFKKYQ 161
>d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 161
Score = 118 bits (297), Expect = 6e-32
Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 16/175 (9%)
Query: 269 YGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPI 328
Y G + H + + + R++ + P I+Y+ AH T T +GD +
Sbjct: 1 YAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAV 60
Query: 329 EVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPG 388
E +K+ FSE S K GHL A+G + I +L + + P
Sbjct: 61 EARAIKTVFSEHATSGTLAF-------SSTKGATGHLLGAAGAVEAIFSILAIHHGVAPM 113
Query: 389 NPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNNIPRRAGVSSFGVGGSNVHVIIE 443
++K P+ P K + R A +SFG GG+N ++
Sbjct: 114 TLNVKNPDPIFDKRFMPLTTSKKM---------LVRTAMSNSFGFGGTNASLLFA 159
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 194
Score = 117 bits (293), Expect = 5e-31
Identities = 37/214 (17%), Positives = 66/214 (30%), Gaps = 23/214 (10%)
Query: 232 GRCMTFDQRANGYVRSEGVGVILLKPLKNAIIDNDHIYGIFRGNFENHGGHSSSPTSPNM 291
+ FD+RA GYV EG +++L+ A H + + P
Sbjct: 4 RAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPAG 63
Query: 292 LAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDPIEVNGLKSAFSELHEYYKTPLLKP 351
++ + A P ++ + A G G D E + F
Sbjct: 64 --LERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREGVPVT------ 115
Query: 352 YCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIPGNPHLKIPNSYLKLDNTPFYLVNK 411
K G L + G + V+ L+ L+ I + +D ++ +
Sbjct: 116 -----VPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGID----LVLGE 166
Query: 412 TCDWIQLDNNIPRRAGVSSFGVGGSNVHVIIEEY 445
PR A V + G G N ++ +
Sbjct: 167 PRST------APRTALVLARGRWGFNSAAVLRRF 194
>d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 159
Score = 112 bits (280), Expect = 1e-29
Identities = 46/176 (26%), Positives = 66/176 (37%), Gaps = 20/176 (11%)
Query: 268 IYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDP 327
IY G + H + P + + A I P + YI AHGT T +GD
Sbjct: 2 IYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDR 61
Query: 328 IEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIP 387
EV +K F + + S K+ IGHL A+G + I + L + IP
Sbjct: 62 AEVLAIKRVFGDHA---------KRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIP 112
Query: 388 GNPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNNIPRRAGVSSFGVGGSNVHVIIE 443
+L+ P+ L LD P K A +SF GG N + +
Sbjct: 113 PTINLEDPDPELDLDFVPEPREAK-----------VDYALSNSFAFGGHNAVLAFK 157
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 109 bits (273), Expect = 4e-28
Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 30/230 (13%)
Query: 15 IAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWGG 74
+ I G+G + PG FW L + A + +D +
Sbjct: 3 VVITGVGVRAPGGNGTRQFWELLTSGRTATRRIS--FFDPS---------------PYRS 45
Query: 75 FLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGVS 134
+ FD G P E + MD + + A +G P L ++ + G +
Sbjct: 46 QVAAEADFDPVAEGFGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSA 105
Query: 135 TADYKDILNEARHKGLVKSLAEP-------------FPFMIANRVSYLFNFHGPSEVIDT 181
A + E E P ++ V++ GP ++ T
Sbjct: 106 VAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVST 165
Query: 182 ACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLSEN 231
C+S L ++ A+ ++ + D+ AG + +P + +
Sbjct: 166 GCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR 215
>d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 151
Score = 99.8 bits (248), Expect = 2e-25
Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 28/177 (15%)
Query: 269 YGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTIN-YIEAHGTGTKLGDP 327
Y G G +P+ + + A T Y+ +HGT T +GD
Sbjct: 1 YAEIVGYGATSDGAD--MVAPSGEGA----VRCMKMAMHGVDTPIDYLNSHGTSTPVGDV 54
Query: 328 IEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIP 387
E+ ++ F + + + KA GH A+GV I LLML++ I
Sbjct: 55 KELAAIREVFGDKS-----------PAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIA 103
Query: 388 GNPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNNIPRRAGVSSFGVGGSNVHVIIEE 444
+ +++ + +V +T D +SFG GG+N +++ +
Sbjct: 104 PSINIEELDEQ----AAGLNIVTETTDRE------LTTVMSNSFGFGGTNATLVMRK 150
>d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 158
Score = 99.5 bits (247), Expect = 4e-25
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 22/178 (12%)
Query: 268 IYGIFRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKLGDP 327
I G + + P + + A I+P + Y+ AHGT T +
Sbjct: 2 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEK 61
Query: 328 IEVNGLKSAFSELHEYYKTPLLKPYCGLGSVKANIGHLEAASGVIGVIKVLLMLKYKKIP 387
E + + + + S K+ GHL A+G + I + +++ +P
Sbjct: 62 GESGAIVAVLGK------------EVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVP 109
Query: 388 GNPHLKIPNSYLKLDNTPFYLVNKTCDWIQLDNNIPRRAGVSSFGVGGSNVHVIIEEY 445
+ Y++ + + K A ++FG GG N + + +
Sbjct: 110 MTAGTSEVSDYIEANVVYGQGLEKE----------IPYAISNTFGFGGHNAVLAFKRW 157
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 94.4 bits (233), Expect = 9e-23
Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 25/223 (11%)
Query: 14 TIAIIGIGGKFPGSKNINDFWRKLENNEDAITEVPTSRWDWKAIYGDPHLESGKTKVKWG 73
++ I G+G P + +W + + + V R+D ++
Sbjct: 1 SVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVT--RFDVS---------------RYP 43
Query: 74 GFLYDADCFDANFFGISPAEAEVMDPQLRLFIETTWAALEDAGYPPSKLSGSKTAIFAGV 133
L I DP RL + AL+DA P L+ +
Sbjct: 44 ATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTAN 103
Query: 134 STADYKDILNEARHKGLVKSLAEPFPFMIAN-------RVSYLFNFHGPSEVIDTACSSS 186
+ + E R + A ++S GPS + +
Sbjct: 104 ACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGG 163
Query: 187 LIAINRAIESLHLKNCDLALAGGVNILASPNITIASSKAGLLS 229
L A+ A ++ L ++GGV+ P ++ +G +S
Sbjct: 164 LDALGHARRTIRR-GTPLVVSGGVDSALDPWGWVSQIASGRIS 205
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme
[TaxId: 117187]}
Length = 349
Score = 34.4 bits (78), Expect = 0.031
Identities = 26/189 (13%), Positives = 50/189 (26%), Gaps = 18/189 (9%)
Query: 101 LRLFIETTWAALEDAGYPPSKLSGSKTAIF-AGVSTADYKDILNEARHKGLVKSLAEPFP 159
+ TT+A D + P +SGS I A D S +P
Sbjct: 45 VTFKGTTTFATTADNDFNPIVISGSNITITGASGHVIDGNGQAYWDGKGSNSNSNQKPDH 104
Query: 160 FMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAIESLHLKNCDLALAGGVNILASPNIT 219
F++ + + L N + + G+ +
Sbjct: 105 FIVVQKTTGNSKITN------------LNIQNWPVHCFDITGSSQLTISGLILDNRAGDK 152
Query: 220 I-ASSKAGLLSENGRCMTFDQRANGYVR----SEGVGVILLKPLKNAIIDNDHIYGIFRG 274
A S + + N + + + + N ++ N + G
Sbjct: 153 PNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGTNIVVSNMYCSGGHGL 212
Query: 275 NFENHGGHS 283
+ + GG S
Sbjct: 213 SIGSVGGKS 221
>d1l3la2 d.110.5.1 (A:2-169) Transcription factor TraR, N-terminal
domain {Agrobacterium tumefaciens [TaxId: 358]}
Length = 168
Score = 27.7 bits (61), Expect = 2.1
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 135 TADYKDILNEARHKGLVKSLAEPFPFMIANRVSYLFNFHGPSEVIDTACSSSLIAINRAI 194
+ D + + A G+ + P AN +F VID +A I
Sbjct: 94 SKDERAFYDHASDFGIRSGIT--IPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATI 151
Query: 195 ESLHLKNCDLALA 207
+H + L
Sbjct: 152 GQIHARISFLRTT 164
>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal
fragment {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 26.2 bits (57), Expect = 5.4
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 272 FRGNFENHGGHSSSPTSPNMLAQKQLLIDVYRRANINPYTINYIEAHGTGTKL 324
F + G S + + + + + +Y Y Y G G ++
Sbjct: 60 FLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGAQI 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.404
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,108,748
Number of extensions: 102476
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 23
Length of query: 545
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 455
Effective length of database: 1,171,896
Effective search space: 533212680
Effective search space used: 533212680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)