BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6130
(295 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328702292|ref|XP_001952290.2| PREDICTED: recombination repair protein 1-like [Acyrthosiphon
pisum]
Length = 317
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 191/293 (65%), Gaps = 18/293 (6%)
Query: 4 KKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNK 63
+K A + +SKKR + D+ +KK+KS V+ LN+I++ C K
Sbjct: 7 QKKMADYITATTDNSKKRVRNNDGDDSESKKSKSTQVD------------LNQINFDCEK 54
Query: 64 KNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKF 123
K+ G N KI SWNVAGLRA +KK+ ++Y+KKED DI CLQE KC E Q+P E K+
Sbjct: 55 KSAKGLTWNLKIISWNVAGLRAWLKKDVVEYLKKEDPDIICLQEIKCTEKQMPDEAKL-- 112
Query: 124 PEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKN--EHYGRNCNSNIVNTFYIRKNV 181
P YK Y S KAGY+GV LY+K KP V G K+ ++ GR + F + +
Sbjct: 113 PGYKIYINSGDKAGYSGVALYSKTKPISVRMGKEIKDLDDNEGRVIEAEYEQFFLVSTYI 172
Query: 182 PNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGF 241
PNAGAGLKTL KR++WD+ F ++L +LD +KPV+L GDLNV+H+ ID+ANP TNT+SAGF
Sbjct: 173 PNAGAGLKTLPKRMKWDEAFRKYLKELDTKKPVVLTGDLNVAHEEIDIANPKTNTKSAGF 232
Query: 242 TIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
T EERD+ S LL++GF D+FR L P++TGAYT+W+Y +R++N G +YF
Sbjct: 233 TKEERDNMSLLLEQGFVDTFRTLNPEKTGAYTFWTYFH-NSRAKNVGWRLDYF 284
>gi|242004144|ref|XP_002422991.1| Recombination repair protein, putative [Pediculus humanus corporis]
gi|212505907|gb|EEB10253.1| Recombination repair protein, putative [Pediculus humanus corporis]
Length = 332
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 140/296 (47%), Positives = 187/296 (63%), Gaps = 13/296 (4%)
Query: 1 MGPKKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKID-- 58
M +KA K + + +KK K + +DSD++ K SG V+ K+ +EK LNKID
Sbjct: 1 MPKRKAVQKTITEFADVNKKAKVKKDDSDSSNKVETSGKVKGKS--ETSEKKPLNKIDTD 58
Query: 59 -----YSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHET 113
+ C K + G NFKI+SWNV L++ K G++Y+++E D+ C QETKC E
Sbjct: 59 FDIIDFKCAKNSSAGNSWNFKISSWNVVSLKSITNKNGMEYVRRESPDVMCFQETKCSEK 118
Query: 114 QLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIV 172
P E K+ P Y Y+ + K GYAGV LY+K+KP V G+G K ++ GR +
Sbjct: 119 NAPSESKL--PGYHRYFAAGVKEGYAGVALYSKLKPLSVKIGIGHKEHDTEGRVITAEYE 176
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ + + VPNAG GL TL KRL+WD F +L KLD+EKPVIL GDLNV+H IDL NP
Sbjct: 177 DFYLVTAYVPNAGRGLVTLPKRLKWDVAFKGYLKKLDSEKPVILCGDLNVAHNEIDLKNP 236
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+TNT++AGFT EERD F+ LL+ GF D+FR LYP + GAYTYW+Y+ ARSRN G
Sbjct: 237 STNTKTAGFTQEERDGFTKLLNAGFIDTFRKLYPNKEGAYTYWNYIG-NARSRNAG 291
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 134/276 (48%), Positives = 179/276 (64%), Gaps = 14/276 (5%)
Query: 16 KSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKI 75
+ SK+ S E+ + KT+ V NK +NE D+ C+K N G + N KI
Sbjct: 33 RKSKRTASSTEEPASKRAKTEPKPVMNKVDTDLNE------TDFDCDKLNAEGNKYNLKI 86
Query: 76 ASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPK 135
+SWNV+G+RA +KK G++YI KEDADI LQETKC + +LP EVK+K Y Y+L S K
Sbjct: 87 SSWNVSGIRALIKKSGMEYIMKEDADIVALQETKCDKNKLPEEVKLK--GYHHYFLDSKK 144
Query: 136 AGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
AGY GV LYTK KP + YGL KN + GR + N +++ VPNAG L TL
Sbjct: 145 AGYCGVALYTKQKPIDIQYGL--KNSEFDDEGRLITAEYPNFYFLNVYVPNAGQKLVTLP 202
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
KRL+W++ F ++ +LD +KPVI+ GD+NV+H+ IDL NP TNT++AGFT EER+ +
Sbjct: 203 KRLQWNEAFKSYVKQLDEKKPVIICGDMNVAHQEIDLTNPKTNTKNAGFTKEEREGMTDF 262
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L GF D+FR LYP +TGAYT+WSY + ARS+N G
Sbjct: 263 LAAGFVDTFRSLYPDKTGAYTFWSYFA-NARSKNIG 297
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 135/283 (47%), Positives = 179/283 (63%), Gaps = 20/283 (7%)
Query: 7 AAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNK 66
A+K DK + SS +K+ K + ++NK +L++ID+ C K N+
Sbjct: 54 ASKSTDKSDDSSTSKKA----------KNEPKQMQNKTD------TNLDEIDFGCTKSNQ 97
Query: 67 LGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY 126
G++ N KI +WNV+G+RA +KK GLDYI KEDADI LQETKC + ++P EVK+ P Y
Sbjct: 98 EGKKHNLKICTWNVSGIRAVIKKHGLDYITKEDADIIALQETKCDKGKMPDEVKL--PGY 155
Query: 127 KTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAG 185
Y+L S K GY GV L++K KP V YGL + GR F I VPNAG
Sbjct: 156 HHYFLDSKKPGYCGVALFSKEKPISVKYGLNDSTFDTEGRIITVEFPEFFVINVYVPNAG 215
Query: 186 AGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
L TL KRLEW+KLF +H+ +LD +KPVI+ GD+NV+H+ IDL NP TNT++AGFT EE
Sbjct: 216 QKLVTLPKRLEWNKLFKKHIEELDQKKPVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEE 275
Query: 246 RDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
R+ + L GF D+FR LYP+ GAYT+WSY + ARS+N G
Sbjct: 276 RNDMTDFLAAGFIDTFRSLYPEIEGAYTFWSYFA-NARSKNIG 317
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 178/282 (63%), Gaps = 10/282 (3%)
Query: 8 AKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKL 67
+K + K SK+ E+ A KT S+ NK +NE I++ C K N
Sbjct: 35 SKTEETSNKRSKRNTDHTEEPSAKRAKTDVKSIINKTDTDLNE------INFDCLKLNAT 88
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G + N KI+SWNV+G+RA +KK G+ YI KEDADI LQETKC +LP E+K+ Y
Sbjct: 89 GNKYNLKISSWNVSGIRAVIKKNGIKYIAKEDADIVALQETKCDSNKLPEEIKLN--GYH 146
Query: 128 TYWLSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGA 186
Y+L S K+GY GV L+TK KP V YGL ++ ++ GR + +N + I VPNAG
Sbjct: 147 YYFLESKKSGYCGVALFTKEKPIDVKYGLNNSEFDNEGRLITAEYLNFYLINVYVPNAGQ 206
Query: 187 GLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEER 246
L TL KRL+W+++F ++ LD +KPVI+ GD+NV+HK IDL NP TN ++AGFTIEER
Sbjct: 207 KLVTLPKRLKWNEIFKTYVRNLDEKKPVIICGDMNVAHKEIDLRNPKTNIKNAGFTIEER 266
Query: 247 DSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
D + L GF D+FR LYP +T AYT+WSY + ARS+N G
Sbjct: 267 DGMTDFLATGFVDTFRALYPDKTDAYTFWSYFA-NARSKNIG 307
>gi|291222020|ref|XP_002731016.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 338
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/277 (48%), Positives = 183/277 (66%), Gaps = 10/277 (3%)
Query: 20 KRKSEVEDSDANTKKTKSGSVENK-ATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASW 78
KRKS +D++ KTK V+NK A G +EK +L+ +D+S N K G+E N K+ SW
Sbjct: 36 KRKS----NDSDAMKTKKTKVDNKEAKGAGSEKPTLDSLDFSLNAKTTDGKEWNIKLVSW 91
Query: 79 NVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGY 138
NV G+RA K EG Y+ KED DIF +QETKC E ++P +VK F Y +YW + + GY
Sbjct: 92 NVNGVRAWCKNEGHKYVSKEDPDIFTIQETKCQEGEVPDDVK--FDGYHSYWSYAEEKGY 149
Query: 139 AGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEW 197
AG GLY+KV+P VTYG+G K++ GR + ++I +PNAG GLK L R EW
Sbjct: 150 AGTGLYSKVEPISVTYGIGINKHDKEGRCITAEYEKFYFISTYIPNAGKGLKRLSYRQEW 209
Query: 198 DKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGF 257
DK F E++ KLD +KP+I GDLNV+H+ IDL NP TN ++AGF+ EER+ F+ L+ G
Sbjct: 210 DKDFREYMKKLDEKKPIIWCGDLNVAHQEIDLTNPKTNKKTAGFSKEEREGFTKHLEIGL 269
Query: 258 TDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
DS+RHL P++TG +++W+YM AR +N G +YF
Sbjct: 270 VDSYRHLNPEKTGEWSFWTYMM-NARGKNIGWRLDYF 305
>gi|390176532|ref|XP_001356149.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|388858703|gb|EAL33209.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 648
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/288 (47%), Positives = 180/288 (62%), Gaps = 18/288 (6%)
Query: 6 AAAKVVDKEEKSSKKRKSEVEDSDA--NTKKTKSGSVENKATGPMNEKLSLNKIDYSCNK 63
A +K V +K++ KSE + DA +K +K+ +E K++L+K D++
Sbjct: 335 AESKPVRGRKKAATATKSEAAEDDAVDGSKTSKTKKLEKAGEA----KVNLDKADFALPA 390
Query: 64 KNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKF 123
+ NFKI+SWNVAGLRA +KK+GL + E+ DIFCLQETKC QLP E+
Sbjct: 391 EKVF----NFKISSWNVAGLRAWLKKDGLQSLALEEPDIFCLQETKCSNDQLPEEL-THV 445
Query: 124 PEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKN 180
P Y YWL P GYAGV +Y+K+ P V YG+G NE + GR + + I
Sbjct: 446 PGYHPYWLCMP-GGYAGVAIYSKIMPINVEYGIG--NEEFDDVGRMITAEYEKFYLINVY 502
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPN+G L L+ R+ W+KLFH ++ KLDA K V++ GD+NVSH IDL NP TNT++AG
Sbjct: 503 VPNSGRKLVNLEARMRWEKLFHSYVQKLDALKAVVICGDMNVSHNEIDLENPKTNTKNAG 562
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
FT EERD + LL GF D+FRHLYP + GAYTYW+YMS AR+RN G
Sbjct: 563 FTKEERDKMTELLGLGFVDTFRHLYPDKKGAYTYWTYMS-NARARNVG 609
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/277 (47%), Positives = 182/277 (65%), Gaps = 5/277 (1%)
Query: 14 EEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNE-KLSLNKIDYSCNKKNKLGEEPN 72
+E + KK K+E ++S +TKS + + K N+ +L++ID+ C K N G+E N
Sbjct: 15 DEPAPKKAKNEPKESKKTNNETKSTTKKAKDEPKQNKIDTNLDEIDFECMKPNVEGKEYN 74
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
KI +WNV+G+RA +KK GLDYI KEDADI LQETKC + ++P E+K+ Y Y+L
Sbjct: 75 LKICTWNVSGIRAVIKKNGLDYIAKEDADIIALQETKCGKDKMPDEIKLS--GYHHYFLD 132
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
S ++GY GV L+ K KP V YGL N + GR + F + VPNAG L TL
Sbjct: 133 SKQSGYCGVALFCKEKPVSVKYGLNNSNFDSEGRIIAAEFPEFFMVNVYVPNAGQKLVTL 192
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
KRLEW+K+F +++ +LD +KPVI+ GD+NV+H+ IDL NP TNT++AGFT EERD +
Sbjct: 193 PKRLEWNKIFKKYIEELDQKKPVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERDGMTD 252
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L GF D+FR LYP + GAYT+WSY + AR+++ G
Sbjct: 253 FLAAGFIDTFRLLYPDKEGAYTFWSYFA-NARNKDIG 288
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/220 (54%), Positives = 148/220 (67%), Gaps = 8/220 (3%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
N KI SWNVAGLRA +KK+GL I E+ DIFCLQETKC QLP EV + P Y YWL
Sbjct: 453 NLKICSWNVAGLRAWLKKDGLQLIDLEEPDIFCLQETKCANDQLPEEV-TRLPGYHPYWL 511
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGL 188
P GYAGV +Y+K+ P V YG+G NE + GR + + I VPN+G L
Sbjct: 512 CMP-GGYAGVAIYSKIMPIHVEYGIG--NEEFDDVGRMITAEYEKFYLINVYVPNSGRKL 568
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
L+ R+ W+KLF ++ KLDA KPV++ GD+NVSH PIDL NP NT++AGFT EERD
Sbjct: 569 VNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDK 628
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ LL GF D+FRHLYP R GAYT+W+YM+ AR+RN G
Sbjct: 629 MTELLGLGFVDTFRHLYPDRKGAYTFWTYMA-NARARNVG 667
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/220 (54%), Positives = 148/220 (67%), Gaps = 8/220 (3%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
N KI SWNVAGLRA +KK+GL I E+ DIFCLQETKC QLP EV + P Y YWL
Sbjct: 426 NLKICSWNVAGLRAWLKKDGLQLIDLEEPDIFCLQETKCANDQLPEEV-TRLPGYHPYWL 484
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGL 188
P GYAGV +Y+K+ P V YG+G NE + GR + + I VPN+G L
Sbjct: 485 CMP-GGYAGVAIYSKIMPIHVEYGIG--NEEFDDVGRMITAEYEKFYLINVYVPNSGRKL 541
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
L+ R+ W+KLF ++ KLDA KPV++ GD+NVSH PIDL NP NT++AGFT EERD
Sbjct: 542 VNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDK 601
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ LL GF D+FRHLYP R GAYT+W+YM+ AR+RN G
Sbjct: 602 MTELLGLGFVDTFRHLYPDRKGAYTFWTYMA-NARARNVG 640
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/220 (54%), Positives = 148/220 (67%), Gaps = 8/220 (3%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
N KI SWNVAGLRA +KK+GL I E+ DIFCLQETKC QLP EV + P Y YWL
Sbjct: 426 NLKICSWNVAGLRAWLKKDGLQLIDLEEPDIFCLQETKCANDQLPEEV-TRLPGYHPYWL 484
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGL 188
P GYAGV +Y+K+ P V YG+G NE + GR + + I VPN+G L
Sbjct: 485 CMP-GGYAGVAIYSKIMPIHVEYGIG--NEEFDDVGRMITAEYEKFYLINVYVPNSGRKL 541
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
L+ R+ W+KLF ++ KLDA KPV++ GD+NVSH PIDL NP NT++AGFT EERD
Sbjct: 542 VNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDK 601
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ LL GF D+FRHLYP R GAYT+W+YM+ AR+RN G
Sbjct: 602 MTELLGLGFVDTFRHLYPDRKGAYTFWTYMA-NARARNVG 640
>gi|390176534|ref|XP_003736152.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858704|gb|EIM52225.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 675
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 159/241 (65%), Gaps = 12/241 (4%)
Query: 51 KLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKC 110
K++L+K D++ + NFKI+SWNVAGLRA +KK+GL + E+ DIFCLQETKC
Sbjct: 405 KVNLDKADFALPAEKVF----NFKISSWNVAGLRAWLKKDGLQSLALEEPDIFCLQETKC 460
Query: 111 HETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNC 167
QLP E+ P Y YWL P GYAGV +Y+K+ P V YG+G NE + GR
Sbjct: 461 SNDQLPEEL-THVPGYHPYWLCMP-GGYAGVAIYSKIMPINVEYGIG--NEEFDDVGRMI 516
Query: 168 NSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPI 227
+ + I VPN+G L L+ R+ W+KLFH ++ KLDA K V++ GD+NVSH I
Sbjct: 517 TAEYEKFYLINVYVPNSGRKLVNLEARMRWEKLFHSYVQKLDALKAVVICGDMNVSHNEI 576
Query: 228 DLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNT 287
DL NP TNT++AGFT EERD + LL GF D+FRHLYP + GAYTYW+YMS AR+RN
Sbjct: 577 DLENPKTNTKNAGFTKEERDKMTELLGLGFVDTFRHLYPDKKGAYTYWTYMS-NARARNV 635
Query: 288 G 288
G
Sbjct: 636 G 636
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/280 (47%), Positives = 177/280 (63%), Gaps = 13/280 (4%)
Query: 13 KEEKSSKKRKSEVEDSDANTKK---TKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGE 69
K E + K+ K ++D++ T K T SV N+ +NE ID+ C+K N G
Sbjct: 48 KSEATKKRSKHSIDDNEEPTAKRFKTDKKSVLNRIDTNLNE------IDFGCSKLNAKGN 101
Query: 70 EPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTY 129
+ N KI+SWNV+G+RA +KK G++Y+ KEDADI LQETKC + +LP EVK+ Y Y
Sbjct: 102 KYNLKISSWNVSGIRAVIKKNGMEYMLKEDADIIALQETKCDKNKLPEEVKLN--GYHYY 159
Query: 130 WLSSPKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
+L S K GY GV LYTK KP + YGL + + GR + N + I VPNAG L
Sbjct: 160 FLESKKPGYCGVALYTKEKPIDIKYGLDNVEFDSEGRLITAEYSNFYLINVYVPNAGQKL 219
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
TL KRL+W++ F ++ LD +KPVI+ GD+NV+H+ IDL NP TN ++AGFT EER
Sbjct: 220 ITLPKRLKWNEAFKAYVKNLDEKKPVIICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSG 279
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ LD GF D+FR LYP + GAYT+WSY + ARS+N G
Sbjct: 280 MTDFLDAGFVDTFRALYPNKEGAYTFWSYFA-NARSKNIG 318
>gi|157127237|ref|XP_001654881.1| ap endonuclease [Aedes aegypti]
gi|108872984|gb|EAT37209.1| AAEL010781-PA [Aedes aegypti]
Length = 612
Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 124/238 (52%), Positives = 162/238 (68%), Gaps = 5/238 (2%)
Query: 58 DYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPP 117
DY+ + + G+E NFKI+SWNVAGLR+ V K GLD+ + E DI C+QETKC + QLP
Sbjct: 345 DYASLEFDLTGKEFNFKISSWNVAGLRSWVGKGGLDFFEHEKPDILCIQETKCVDDQLPE 404
Query: 118 EVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY-GRNCNSNIVNTFY 176
EV+ Y YWL P GYAGV +Y+K P VTYGLG + + GR + F
Sbjct: 405 EVRH-IKGYHPYWLCKP-GGYAGVAIYSKKMPFNVTYGLGDEEQDADGRLLTAEYEKFFL 462
Query: 177 IRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNT 236
+ VPNAG GL TL KR+ WD+ FH++L LDA+KPVIL GD+NV+H+ IDLANP TN
Sbjct: 463 VCVYVPNAGRGLVTLPKRMRWDEKFHKYLKDLDAKKPVILCGDMNVAHEEIDLANPKTNK 522
Query: 237 RSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++AGFT EER+ + LL GF D+FR LYP+++GAYT+W+YM AR++N G +YF
Sbjct: 523 KNAGFTPEEREGMTKLLSLGFVDTFRQLYPEQSGAYTFWTYMG-NARAKNVGWRLDYF 579
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/291 (46%), Positives = 180/291 (61%), Gaps = 12/291 (4%)
Query: 1 MGPKKAAAKVVDKE--EKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKID 58
MG K V E +K SK+ + E+ A KT SV N+ +LN+ID
Sbjct: 14 MGIKSEKKNKVKSEATKKRSKRNTDDNEEPTAKRFKTDKKSVLNRID------TNLNEID 67
Query: 59 YSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPE 118
+ C+K N G + N KI+SWNV+G+RA +KK G++Y+ KEDADI LQETKC + +LP E
Sbjct: 68 FGCSKLNAKGNKYNLKISSWNVSGIRAVIKKNGMEYMLKEDADIIALQETKCDKNKLPEE 127
Query: 119 VKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYI 177
VK+ Y Y+L S K GY GV LYTK KP + YGL + + GR + N + +
Sbjct: 128 VKLN--GYHYYFLESKKPGYCGVALYTKEKPIDIKYGLDNVEFDSEGRLITAEYSNFYLV 185
Query: 178 RKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTR 237
VPNAG L TL KRL+W++ F ++ LD +KPVI+ GD+NV+H+ IDL NP TN +
Sbjct: 186 NVYVPNAGQKLITLPKRLKWNEAFKAYVKNLDEKKPVIICGDMNVAHQKIDLKNPDTNKK 245
Query: 238 SAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+AGFT EER + LD GF D+FR LYP + GAYT+WSY + ARS+N G
Sbjct: 246 NAGFTQEERSGMTDFLDAGFVDTFRALYPDKEGAYTFWSYFA-NARSKNIG 295
>gi|233305|gb|AAB19427.1| Rrp1=recombination repair protein 1 [Drosophila, Peptide, 253 aa]
Length = 253
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/217 (53%), Positives = 146/217 (67%), Gaps = 4/217 (1%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
KI SWNVAGLRA +KK+GL I E+ DIFCLQETKC QLP EV + P Y YWL
Sbjct: 1 LKICSWNVAGLRAWLKKDGLQLIDLEEPDIFCLQETKCANDQLPEEVT-RIPGYHPYWLC 59
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
P GYAGV +Y+K+ P V YG+G + + GR + + I VPN+G L L
Sbjct: 60 MP-GGYAGVAIYSKIMPIHVEYGIGNEEFDDVGRMITAEYEKFYLINVYVPNSGRKLVNL 118
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W+KLF ++ KLDA KPV++ GD+NVSH PIDL NP NT++AGFT EERD +
Sbjct: 119 EPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTE 178
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LL GF D+FRHLYP R GAYT+W+YM+ AR+RN G
Sbjct: 179 LLGLGFVDTFRHLYPDRKGAYTFWTYMA-NARARNVG 214
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 162/236 (68%), Gaps = 3/236 (1%)
Query: 53 SLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHE 112
+L++I++ C K N GE+ N KI +WNV+G+RA +KK G+ Y+++EDADI LQETKC
Sbjct: 120 NLDEINFDCEKVNADGEKYNIKICTWNVSGIRAVLKKNGMTYLEREDADIIALQETKCET 179
Query: 113 TQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIV 172
++P EVK+K Y Y+L S KAGY G+ LY+K +P ++ GL + + GR +
Sbjct: 180 KKIPDEVKLK--GYTRYFLDSKKAGYCGMALYSKKEPIDISMGLDEEFDDEGRLITAEYE 237
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ + + VPNAG L TL KRL+W++ F +H+ LD +KPVI+ GD+NV+H+ IDL NP
Sbjct: 238 HFYLVNVYVPNAGNKLVTLPKRLKWNEAFKKHIQDLDKKKPVIICGDMNVAHQEIDLKNP 297
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
TNT++AGFT EERD + L GF D+FR LYP +T AYT+W+Y + ARS+N G
Sbjct: 298 KTNTKNAGFTKEERDGMTDFLQAGFVDTFRLLYPDKTDAYTFWAYFN-NARSKNIG 352
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 115/224 (51%), Positives = 157/224 (70%), Gaps = 4/224 (1%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
N K+ SWNV G+RA + KEGL+Y+KKE DIF +QETKC +++LPPE+K Y +Y+L
Sbjct: 96 NLKLCSWNVNGVRAWLGKEGLEYLKKEQPDIFAIQETKCSDSKLPPEMK-SVEGYHSYFL 154
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ + GY+GV L K+KP V YG+G K++ GR + + + VPNAG L
Sbjct: 155 AGDQEGYSGVALLAKIKPLDVKYGIGMEKHDKEGRVITAEFDKFYLVAVYVPNAGKKLVR 214
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R+EWDK F +L +L+A+K V+L GD+NV+H+ IDLANP TN ++AGFT EERD F+
Sbjct: 215 LDYRMEWDKDFRAYLKELEAKKHVVLCGDMNVAHQEIDLANPKTNKKNAGFTQEERDGFT 274
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL+ GF DSFRHLYP + GAYT+W+YM AR++N G +YF
Sbjct: 275 ALLESGFVDSFRHLYPDKKGAYTFWTYMM-NARAKNVGWRLDYF 317
>gi|357614743|gb|EHJ69244.1| ap endonuclease [Danaus plexippus]
Length = 630
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/295 (45%), Positives = 180/295 (61%), Gaps = 19/295 (6%)
Query: 2 GPKKA-AAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYS 60
G KKA A+++ D E +K+R+ + + ++ N KKTK+ + ID+S
Sbjct: 311 GQKKAEASELQDTGEPINKRRRKDDKATEDNKKKTKAAT-------------DYESIDFS 357
Query: 61 CNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVK 120
+ G+E NFKIA+WNV G+RA + K GLDY+K E DI CLQETKC +LP EVK
Sbjct: 358 NKSQTSQGKEWNFKIANWNVDGIRAWMGKGGLDYLKYEKPDILCLQETKCALDKLPYEVK 417
Query: 121 MKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRK 179
P Y YWLSS K GYAGVG+YT V YGL + + GR + + I
Sbjct: 418 -NIPGYHAYWLSSDKDGYAGVGIYTTKLAMNVQYGLQNEELDSEGRIITAEYEQFYLICT 476
Query: 180 NVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSA 239
VPNAG L +L KRL+W+ F EH+ LD +KPVI+ GD+NV+H IDL NP TN ++A
Sbjct: 477 YVPNAGRKLVSLPKRLKWNDEFREHVKALDEKKPVIICGDMNVAHNEIDLTNPKTNKKNA 536
Query: 240 GFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYF 293
GFT EER + LL GF D+FRH +P++ AYT+WSYM+ +R++N G +YF
Sbjct: 537 GFTEEERAGMTELLGDGFVDTFRHFHPEKV-AYTFWSYMA-NSRAKNVGWRLDYF 589
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST]
gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST]
Length = 606
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/224 (52%), Positives = 151/224 (67%), Gaps = 5/224 (2%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
NFKI+SWNVAGLR+ V K GL++I+ E DI C+QETKC E Q+P E + Y YWL
Sbjct: 353 NFKISSWNVAGLRSWVGKGGLEFIEHEKPDILCVQETKCTEDQMPDEARH-IKGYHPYWL 411
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
P G+AGV +Y+K P V YGLG + + GR + + + VPNAG L T
Sbjct: 412 CKP-GGHAGVAIYSKKMPFHVAYGLGDEEQDQDGRLLTAEYEKFYLVCVYVPNAGRKLVT 470
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L KRL W++ FH++L LDA+KPVIL GD+NV+H+ IDLANP TN ++AGFT EER+ +
Sbjct: 471 LPKRLRWNEKFHQYLRDLDAKKPVILCGDMNVAHEEIDLANPKTNKKNAGFTPEEREGMT 530
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCT-NYF 293
LL GF D+FR LYP RTGAYT+W+YM AR++N G +YF
Sbjct: 531 ELLSYGFVDTFRKLYPDRTGAYTFWTYMG-GARAKNVGWRLDYF 573
>gi|312381587|gb|EFR27301.1| hypothetical protein AND_06082 [Anopheles darlingi]
Length = 517
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/224 (52%), Positives = 151/224 (67%), Gaps = 5/224 (2%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
N+KI+SWNVAGLR+ V K GLD+I+ E DI CLQETKC E QLP E + Y YWL
Sbjct: 23 NYKISSWNVAGLRSWVGKGGLDFIEHEQPDILCLQETKCTEDQLPDEAR-HIKGYHPYWL 81
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
P GYAGV +Y++ P V+YGLG + + GR + + + VPNAG L T
Sbjct: 82 CKP-GGYAGVAIYSRKMPIHVSYGLGDEEQDQDGRLLTAEYEKFYLVCVYVPNAGNKLVT 140
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L KR+ WD+ FH++L +LD++KPVIL GD+NV+H+ IDLANP TN ++AGFT EERD S
Sbjct: 141 LPKRMRWDEKFHQYLRELDSKKPVILCGDMNVAHEEIDLANPKTNKKNAGFTQEERDGLS 200
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF D+FR LYP R AY++W+YM AR++N G +YF
Sbjct: 201 KLLSFGFVDTFRQLYPDRKAAYSFWTYMG-GARAKNVGWRLDYF 243
>gi|189235831|ref|XP_966759.2| PREDICTED: similar to ap endonuclease, partial [Tribolium
castaneum]
Length = 344
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/270 (44%), Positives = 168/270 (62%), Gaps = 11/270 (4%)
Query: 17 SSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNK-------IDYSCNKKNKLGE 69
S K +++VE++ K+ S K T P + K N I++ C K+ G+
Sbjct: 76 SGNKEETQVEEAKKPQKRKAVAS--KKETEPDSTKAPKNSTVTNWENINFKCTTKSPKGK 133
Query: 70 EPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTY 129
PNF I +WNV GLR+ +KK LD +K ++ DI C+QETKC +LP EVK Y+T
Sbjct: 134 APNFHITTWNVGGLRSWLKKGCLDILKYDEPDILCIQETKCAVDKLPEEVKT-IEGYETL 192
Query: 130 WLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRK-NVPNAGAGL 188
W SS K GYAGVG+ K KP V YG+ +K C + TF++ VPNAG L
Sbjct: 193 WCSSDKDGYAGVGIMVKDKPLNVIYGIDSKEHDTEGRCITVEYETFFVVNVYVPNAGRKL 252
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
TL KRL+W++ F + + LD++KPVI+ GD+NV+HK IDLANP TNT++AGFT+EERD
Sbjct: 253 VTLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVAHKEIDLANPKTNTKNAGFTVEERDG 312
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYM 278
++ L G+ D +RHLYP++ AYT+W+YM
Sbjct: 313 MTAFLGNGYVDIYRHLYPEKEKAYTFWTYM 342
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 117/251 (46%), Positives = 159/251 (63%), Gaps = 5/251 (1%)
Query: 46 GPMNEKLS-LNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFC 104
GP N ++ I++ C K+ G+ PNF I +WNV GLR+ +KK LD +K + DI C
Sbjct: 965 GPKNSTVTNWENINFKCTTKSPKGKAPNFHITTWNVDGLRSWLKKGCLDILKYDKPDILC 1024
Query: 105 LQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYG 164
+QETKC +LP EVK Y+T W S K GYAGVG+ K KP V YG+ +K
Sbjct: 1025 IQETKCAVYKLPEEVKT-IEGYETLWCCSDKDGYAGVGIMVKDKPLNVIYGIDSKEHDTE 1083
Query: 165 RNCNSNIVNTFYIRKN-VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVS 223
C + TF++ VP+AG L TL KRL+W++ F + + LD++KPVI+ GD+NV+
Sbjct: 1084 GRCITVEYETFFVVNVYVPHAGRNLVTLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVA 1143
Query: 224 HKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTAR 283
HK IDLANP TNT SAGF++EERD ++ L G+ D +RHLYP++ AYT+W YM + AR
Sbjct: 1144 HKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGYVDIYRHLYPEKEKAYTFWIYM-RNAR 1202
Query: 284 SRNTGCT-NYF 293
N G +YF
Sbjct: 1203 PNNVGWRLDYF 1213
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 155/228 (67%), Gaps = 4/228 (1%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G + ++KI +WNV G+R+ +K GL+YI++EDAD++CLQETKC E +LPPEV + YK
Sbjct: 90 GRKGSWKIVTWNVNGIRSWLKNGGLEYIEEEDADVYCLQETKCSEEKLPPEV-TNYKGYK 148
Query: 128 TYWLSSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGA 186
+Y+L+ K GY+GVG+ ++ P V YGL +++ GR F + VPNAG
Sbjct: 149 SYFLAGDKEGYSGVGIMSRKTPLNVEYGLSLEEHDSEGRVITLEFEEFFLVNSYVPNAGR 208
Query: 187 GLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEER 246
GL LD RL WD+ F ++LV L +K VIL GDLNV+H IDL NP TN ++AGFT EER
Sbjct: 209 GLVRLDYRLTWDRDFRKYLVGLKKKKSVILTGDLNVAHNEIDLKNPKTNKKNAGFTEEER 268
Query: 247 DSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ LL++GF D+FR LYP+R GAYT+W+YM AR++N G +YF
Sbjct: 269 QGLTDLLEEGFVDTFRKLYPEREGAYTFWTYM-MNARAKNVGWRLDYF 315
>gi|270010058|gb|EFA06506.1| hypothetical protein TcasGA2_TC009405 [Tribolium castaneum]
Length = 983
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 156/245 (63%), Gaps = 4/245 (1%)
Query: 46 GPMNEKLS-LNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFC 104
GP N ++ I++ C K+ G+ PNF I +WNV GLR+ +KK LD +K + DI C
Sbjct: 740 GPKNSTVTNWENINFKCTTKSPKGKAPNFHITTWNVDGLRSWLKKGCLDILKYDKPDILC 799
Query: 105 LQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYG 164
+QETKC +LP EVK Y+T W S K GYAGVG+ K KP V YG+ +K
Sbjct: 800 IQETKCAVYKLPEEVKT-IEGYETLWCCSDKDGYAGVGIMVKDKPLNVIYGIDSKEHDTE 858
Query: 165 RNCNSNIVNTFYIRKN-VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVS 223
C + TF++ VP+AG L TL KRL+W++ F + + LD++KPVI+ GD+NV+
Sbjct: 859 GRCITVEYETFFVVNVYVPHAGRNLVTLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVA 918
Query: 224 HKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTAR 283
HK IDLANP TNT SAGF++EERD ++ L G+ D +RHLYP++ AYT+W YM + AR
Sbjct: 919 HKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGYVDIYRHLYPEKEKAYTFWIYM-RNAR 977
Query: 284 SRNTG 288
N G
Sbjct: 978 PNNVG 982
>gi|348524661|ref|XP_003449841.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Oreochromis niloticus]
Length = 310
Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 122/234 (52%), Positives = 154/234 (65%), Gaps = 8/234 (3%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+K G N KI SWNV GLRA VKK+GLD++++ED DI CLQETKC E LP E+ P
Sbjct: 47 SKDGRNANMKITSWNVDGLRAWVKKKGLDWVREEDPDILCLQETKCAEKALPAEIT-SMP 105
Query: 125 EY-KTYWLSS-PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKN 180
EY YW +S K GY+GV + K +P KVTYG+G K EH GR + + + +
Sbjct: 106 EYPHKYWAASGDKEGYSGVAMLCKTEPIKVTYGIG-KEEHDKEGRVITAEFPSFYLVTAY 164
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNA GL LD R WD F +L +LD +KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 165 VPNASRGLVRLDYRKTWDVDFRAYLSELDMQKPLVLCGDLNVAHQEIDLKNPKGNKKNAG 224
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER+ FS LL GF DSFR LYP++T AYT+W+YM ARS+N G +YF
Sbjct: 225 FTPEEREGFSQLLAAGFVDSFRELYPEQTNAYTFWTYM-MNARSKNVGWRLDYF 277
>gi|410918464|ref|XP_003972705.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Takifugu
rubripes]
Length = 314
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 156/234 (66%), Gaps = 8/234 (3%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+K G + N KI SWNV GLRA VKK+GLD++++E+ D+ CLQETKC E LP ++ P
Sbjct: 51 SKDGRDANMKITSWNVDGLRAWVKKKGLDWVREENPDVLCLQETKCAEKSLPADI-TSMP 109
Query: 125 EYK-TYWL-SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKN 180
EY YW S K GY+GV + +K +P KVTYG+G K EH GR + + F +
Sbjct: 110 EYPFKYWAGSDDKEGYSGVAMLSKTEPIKVTYGIG-KEEHDKEGRVITAEFSSFFLVTVY 168
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPN+G GL LD R WD F +L +LD +KPV+L GDLNV+H+ IDL NP N ++AG
Sbjct: 169 VPNSGRGLVRLDYRKTWDVDFRTYLSELDIQKPVVLCGDLNVAHQEIDLKNPKGNKKNAG 228
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER+ FS LL+ GF DSFR LYP++T AY++W+YM AR +N G +YF
Sbjct: 229 FTAEEREGFSQLLEAGFVDSFRELYPEQTHAYSFWTYM-MNARDKNVGWRLDYF 281
>gi|443711514|gb|ELU05263.1| hypothetical protein CAPTEDRAFT_159745 [Capitella teleta]
Length = 307
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 171/281 (60%), Gaps = 17/281 (6%)
Query: 20 KRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKI---DYSCNKKNKLGEEPNFKIA 76
KRKS+ D SG+ + K +++ S+ + DYS K G++ N K +
Sbjct: 4 KRKSDASSGDG------SGAKKKKLARTPSKRESIPDVSGNDYSSEAATKDGKKWNLKFS 57
Query: 77 SWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKA 136
SWNV G+RA V+K G Y+ ED DIFC+QETKC + +P + ++ Y YWLS K
Sbjct: 58 SWNVNGIRAWVEKNGHSYVTAEDPDIFCVQETKCAKDLIPDDANIE--GYHAYWLSGDKD 115
Query: 137 GYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKR 194
GY+G GLY+K +P VTYG+ K EH GR + +++ VPNAG GL L R
Sbjct: 116 GYSGTGLYSKQEPLSVTYGI-DKEEHDKEGRVITAEFDKFYFVTAYVPNAGRGLPRLSYR 174
Query: 195 LE-WDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
E WD F E+L LDA+KPV++ GDLNV+HK ID+ANP +N +SAGFT +ER FS LL
Sbjct: 175 SEKWDPDFREYLKNLDAKKPVVMCGDLNVAHKEIDIANPKSNKKSAGFTPQERQGFSELL 234
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ GF D+FR LYP+ T Y+YW+YM AR +N G +YF
Sbjct: 235 EAGFVDAFRELYPEETKKYSYWTYMG-NARGKNVGWRLDYF 274
>gi|340382054|ref|XP_003389536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Amphimedon queenslandica]
Length = 372
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/241 (49%), Positives = 159/241 (65%), Gaps = 6/241 (2%)
Query: 57 IDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLP 116
ID S + KNK G K +SWNV G+RA +K G++Y+ +E D+FC+QETKC E LP
Sbjct: 101 IDLSSDAKNKDGSPWTHKFSSWNVNGVRAWLKASGIEYVNQECPDVFCIQETKCSEKDLP 160
Query: 117 PEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTF 175
+ +++ P Y +YW S+ + GY+G GLY+K +P VTYG+G K+++ GR + +
Sbjct: 161 -KSELEVPGYHSYWNSAEQKGYSGTGLYSKEEPINVTYGIGIPKHDNEGRVITAEFEKFY 219
Query: 176 YIRKNVPNAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTT 234
++ +PNAG LK L R+ EWD F ++L LD KPV+L GDLNV+HK ID+ANP T
Sbjct: 220 FVTAYIPNAGDKLKRLSYRVGEWDPDFKKYLKSLDENKPVVLCGDLNVAHKEIDIANPKT 279
Query: 235 NTRSAGFTIEERDSFSSLL-DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNY 292
N RSAGFT EER+SFSSLL D DSFR LYP + AY+YWSY S AR N G +Y
Sbjct: 280 NQRSAGFTKEERESFSSLLEDNKLIDSFRDLYPDKKEAYSYWSYRS-NARKNNKGWRLDY 338
Query: 293 F 293
F
Sbjct: 339 F 339
>gi|47087383|ref|NP_998586.1| DNA-(apurinic or apyrimidinic site) lyase [Danio rerio]
gi|33416367|gb|AAH55545.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Danio rerio]
Length = 310
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/234 (52%), Positives = 150/234 (64%), Gaps = 8/234 (3%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+K G N KI SWNV GLRA VKK GLD+++KED DI CLQETKC E LP ++ P
Sbjct: 47 SKDGRAANMKITSWNVDGLRAWVKKNGLDWVRKEDPDILCLQETKCAEKALPADIT-AMP 105
Query: 125 EY-KTYWLSSP-KAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKN 180
EY YW S K GY+GV + K +P VTYG+G K EH GR + + F +
Sbjct: 106 EYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIG-KEEHDKEGRVITAEFPDFFLVTAY 164
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNA GL LD R WD F +L LDA KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 165 VPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAG 224
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER+ F+ LL+ GFTDSFR LYP + AYT+W+YM ARS+N G +YF
Sbjct: 225 FTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMM-NARSKNVGWRLDYF 277
>gi|317374848|sp|A0MTA1.1|APEX1_DANRE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=zAP1
gi|117549778|gb|ABK35081.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549788|gb|ABK35082.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549790|gb|ABK35083.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549792|gb|ABK35084.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
Length = 310
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/234 (52%), Positives = 150/234 (64%), Gaps = 8/234 (3%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+K G N KI SWNV GLRA VKK GLD+++KED DI CLQETKC E LP ++ P
Sbjct: 47 SKDGRAANMKITSWNVDGLRAWVKKNGLDWVRKEDPDILCLQETKCAEKALPADIT-GMP 105
Query: 125 EY-KTYWLSSP-KAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKN 180
EY YW S K GY+GV + K +P VTYG+G K EH GR + + F +
Sbjct: 106 EYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIG-KEEHDKEGRVITAEFPDFFLVTAY 164
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNA GL LD R WD F +L LDA KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 165 VPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAG 224
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER+ F+ LL+ GFTDSFR LYP + AYT+W+YM ARS+N G +YF
Sbjct: 225 FTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMM-NARSKNVGWRLDYF 277
>gi|432942680|ref|XP_004083030.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Oryzias latipes]
Length = 311
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/234 (50%), Positives = 151/234 (64%), Gaps = 8/234 (3%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+K G N KI SWNV GLRA VKK GLD++++E D+ CLQETKC E LP E+ P
Sbjct: 48 SKDGRSANMKITSWNVDGLRAWVKKGGLDWVREEAPDVLCLQETKCAEKDLPAEI-TSMP 106
Query: 125 EY-KTYW-LSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKN 180
EY YW +S K GY+GV + +K +P KVTYG+G K EH GR + F +
Sbjct: 107 EYPHKYWAVSDDKEGYSGVAMLSKTEPLKVTYGIG-KEEHDKEGRVITAEFPTFFLVTAY 165
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNA GL LD R WD F +L +LD +KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 166 VPNASRGLVRLDYRKTWDVDFQAYLTELDVQKPLVLCGDLNVAHQEIDLKNPKGNKKNAG 225
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER+ FS LL GF DSFR LYP++ AYT+W+YM + R++N G +YF
Sbjct: 226 FTPEEREGFSQLLAAGFVDSFRELYPEQANAYTFWTYMMNS-RAKNVGWRLDYF 278
>gi|162329921|pdb|2O3C|A Chain A, Crystal Structure Of Zebrafish Ape
gi|162329922|pdb|2O3C|B Chain B, Crystal Structure Of Zebrafish Ape
gi|162329923|pdb|2O3C|C Chain C, Crystal Structure Of Zebrafish Ape
Length = 282
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/234 (52%), Positives = 150/234 (64%), Gaps = 8/234 (3%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+K G N KI SWNV GLRA VKK GLD+++KED DI CLQETKC E LP ++ P
Sbjct: 19 SKDGRAANMKITSWNVDGLRAWVKKNGLDWVRKEDPDILCLQETKCAEKALPADIT-AMP 77
Query: 125 EY-KTYWLSSP-KAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKN 180
EY YW S K GY+GV + K +P VTYG+G K EH GR + + F +
Sbjct: 78 EYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIG-KEEHDKEGRVITAEFPDFFLVTAY 136
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNA GL LD R WD F +L LDA KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 137 VPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAG 196
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER+ F+ LL+ GFTDSFR LYP + AYT+W+YM ARS+N G +YF
Sbjct: 197 FTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYM-MNARSKNVGWRLDYF 249
>gi|350645454|emb|CCD59806.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 281
Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 152/227 (66%), Gaps = 6/227 (2%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
N L + NFKI SWNV G+RA +K G++YIKKE+ADIFC+QETKC ++P E K+ P
Sbjct: 57 NPLSSKWNFKIVSWNVNGIRAVIKNNGMEYIKKENADIFCIQETKCPLHKIPSEAKV--P 114
Query: 125 EYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPN 183
Y+++W S+ KAGYAG L++K+ P KVTYG+G K ++ GR + + + VPN
Sbjct: 115 SYQSFWSSADKAGYAGTALFSKISPIKVTYGIGKKMHDDEGRVITAEYDKFYLVTAYVPN 174
Query: 184 AGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFT 242
+G GL L R EWD F E+L KLD+ KPVI+ GDLNV+H+ IDLA P TN ++AGFT
Sbjct: 175 SGQGLIRLPYREKEWDPDFLEYLRKLDSTKPVIVCGDLNVAHEEIDLARPETNHKTAGFT 234
Query: 243 IEERDSFSSLLDKG-FTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ER F+ LL D++RH YP R G Y++WSY + ARS N G
Sbjct: 235 DQERSGFTKLLSSANLIDTYRHFYPDRRGVYSFWSYRT-AARSINNG 280
>gi|229366136|gb|ACQ58048.1| DNA-apurinic or apyrimidinic site lyase [Anoplopoma fimbria]
Length = 310
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 152/234 (64%), Gaps = 8/234 (3%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+K G + N KI SWNV GLRA VKK GLD++++E D+ CLQETKC E LP E+ P
Sbjct: 47 SKDGRDANMKITSWNVDGLRAWVKKNGLDWVREEAPDVLCLQETKCSEKALPAEI-TSMP 105
Query: 125 EY-KTYWLSS-PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKN 180
EY YW +S K GY+GV + K +P KVTYG+G K EH GR + N + +
Sbjct: 106 EYPHKYWAASDEKQGYSGVAMLCKTEPLKVTYGIG-KEEHDKEGRVITAEFPNFYLVTTY 164
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPN+ GL LD R WD+ F +L +LD +KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 165 VPNSSKGLVRLDYRKTWDEDFRAYLSELDMQKPLVLCGDLNVAHQEIDLKNPKGNKKNAG 224
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT+EER+ F LL GF DSFR LYP++ AYT+W+YM +R +N G +YF
Sbjct: 225 FTVEEREGFGQLLGSGFADSFRELYPEQANAYTFWTYMM-NSRGKNVGWRLDYF 277
>gi|47213945|emb|CAF94476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/231 (50%), Positives = 151/231 (65%), Gaps = 8/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G + N KI SWNV GLRA VKK+GLD++++E+ D+ CLQETKC E LP ++ PEY
Sbjct: 60 GRDANTKITSWNVDGLRAWVKKKGLDWVREENPDVLCLQETKCAEKSLPADI-TSMPEYP 118
Query: 128 -TYWLSSP-KAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPN 183
YW S K GY+GV + K +P KVTYG+G K EH GR + F + VPN
Sbjct: 119 YKYWAGSDDKEGYSGVAMLCKTEPVKVTYGIG-KEEHDKEGRVITAEFPGFFLVTAYVPN 177
Query: 184 AGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTI 243
+G GL LD R WD F +L +LD +KPV+L GDLNV+H+ IDL NP N ++AGFT
Sbjct: 178 SGRGLVRLDYRKTWDADFRTYLSELDVQKPVVLCGDLNVAHQEIDLKNPKGNKKNAGFTA 237
Query: 244 EERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
EER+ F LL+ GF DSFR LYP+++ AY++W+YM AR +N G +YF
Sbjct: 238 EEREGFGQLLEAGFVDSFRELYPEQSHAYSFWTYM-MNARDKNVGWRLDYF 287
>gi|170051904|ref|XP_001861978.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872934|gb|EDS36317.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 340
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 153/238 (64%), Gaps = 5/238 (2%)
Query: 58 DYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPP 117
DYS G E N KI+SWNVAGLR+ V+K L++++ E DI CLQETKC E QLP
Sbjct: 73 DYSKLSFGHEGGEFNVKISSWNVAGLRSWVEKGCLEFLEHEAPDILCLQETKCTEDQLPE 132
Query: 118 EVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFY 176
E + Y YWL P GYAGV +Y+K P V+YGLG + + GR + +
Sbjct: 133 EAR-HIKGYHPYWLCKP-GGYAGVAIYSKKMPFNVSYGLGDAEQDEDGRLLTAEYEKFYL 190
Query: 177 IRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNT 236
+ VPNAG L TL KR+ WD+ F ++L LDA+KPVIL GD+NV+H IDLANP TN
Sbjct: 191 VCVYVPNAGRKLVTLPKRMRWDEKFLQYLRDLDAKKPVILCGDMNVAHAEIDLANPKTNK 250
Query: 237 RSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++AGFT EERD ++LL GF D+FR YP++ AYT+W+YM AR++N G +YF
Sbjct: 251 KNAGFTQEERDGMTNLLSHGFVDTFRQRYPEQKAAYTFWTYMG-NARAKNVGWRLDYF 307
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 115/224 (51%), Positives = 149/224 (66%), Gaps = 5/224 (2%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
NFKI SWNV GLRA +K ++ KED D+FC+QETKC +P E K+ Y YW
Sbjct: 4 NFKITSWNVNGLRAWLKNNSKSFVSKEDPDVFCIQETKCALADIPKEAKL--AGYHCYWN 61
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
S+ + GY+GVGL +K +P KV+YG+G K ++ GR + + + VPN+G GL
Sbjct: 62 SAEQKGYSGVGLCSKKEPIKVSYGMGNKEHDKEGRVITAEYEDFHLVTSYVPNSGRGLPR 121
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L R +W+K F +L KLD KPVIL GDLNV+HK IDLANP TNTR+AGFT EER F+
Sbjct: 122 LGYRQQWNKDFLSYLKKLDEIKPVILCGDLNVAHKDIDLANPKTNTRTAGFTKEERADFT 181
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL +GF D+FR LYP + AYT+WSYM AR++N G +YF
Sbjct: 182 TLLGEGFKDTFRELYPDKKSAYTFWSYMG-GARAKNVGWRLDYF 224
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 176/304 (57%), Gaps = 29/304 (9%)
Query: 1 MGPKKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYS 60
MGPK+ + V +E+ + KK +TKS EN P E+L +++
Sbjct: 1 MGPKRISN--VTREKTAVKK------------PRTKSSKDEN-LNSPDVEQLKTQNLNW- 44
Query: 61 CNK--------KNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHE 112
C K L N K+ SWNV G+RA +K G++YIKKE+ADIFC+QETKC
Sbjct: 45 CTKYPGSSPELAKPLSATWNLKLVSWNVNGIRAVIKNGGMEYIKKENADIFCIQETKCPL 104
Query: 113 TQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNI 171
++P E K+ P Y+++W S+ KAGYAG L++K+ P KVTYG+G K ++ GR +
Sbjct: 105 HKIPSEAKL--PSYQSFWSSADKAGYAGTALFSKIAPKKVTYGIGRKVHDEEGRVITAEF 162
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLA 230
+ + VPNAG GL L R EWD F E+L KLDA KPVI+ GDLNV+H+ IDLA
Sbjct: 163 DRFYLVTAYVPNAGQGLARLPYREKEWDPDFLEYLRKLDATKPVIVCGDLNVAHEEIDLA 222
Query: 231 NPTTNTRSAGFTIEERDSFSSLLDKG-FTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC 289
P TN ++AGFT +ER F+ LL D++RH YP R AY++WSY + N
Sbjct: 223 RPDTNHKTAGFTDQERSGFTKLLSSANLIDTYRHFYPDRREAYSFWSYRTGARLINNGWR 282
Query: 290 TNYF 293
+YF
Sbjct: 283 LDYF 286
>gi|387015594|gb|AFJ49916.1| DNA-(apurinic or apyrimidinic site) lyase-like [Crotalus
adamanteus]
Length = 316
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 164/258 (63%), Gaps = 12/258 (4%)
Query: 40 VENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKED 99
E +A GP+ + +K+ S KK L K+ SWNV G+RA VKK+GL+++ KED
Sbjct: 34 AEKEADGPILYQDPPDKVTSSSGKKYTL------KVTSWNVDGIRAWVKKKGLEWVNKED 87
Query: 100 ADIFCLQETKCHETQLPPEVK--MKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLG 157
D+ CLQETKC E QLP +++ ++P +K + S+ K GY+GV L +K KP VTYG+G
Sbjct: 88 PDVLCLQETKCAEKQLPADIRDLAEYP-HKFWACSNDKEGYSGVALLSKNKPLDVTYGIG 146
Query: 158 TK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVIL 216
+ ++ GR + + F + VPNAG GL L+ R WD+ F +L L A KP+IL
Sbjct: 147 EEEHDKEGRVITAEFSSYFLVTTYVPNAGRGLVRLEYRQRWDEAFRSYLKGLAARKPLIL 206
Query: 217 IGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWS 276
GDLNV+H+ IDL NP N ++AGFT EER F+ LL+ GF D+FRHLYP AYT+W+
Sbjct: 207 CGDLNVAHQEIDLKNPKGNKKNAGFTPEERAGFTQLLEAGFVDTFRHLYPNTPYAYTFWT 266
Query: 277 YMSKTARSRNTGC-TNYF 293
YM AR++N G +YF
Sbjct: 267 YMM-NARAKNVGWRLDYF 283
>gi|198420194|ref|XP_002123983.1| PREDICTED: similar to APEX nuclease (multifunctional DNA repair
enzyme) 1 [Ciona intestinalis]
Length = 337
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 178/296 (60%), Gaps = 19/296 (6%)
Query: 1 MGPKKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYS 60
M P +A+ K E ++ ++K E++ K T+ ENK + +KL
Sbjct: 24 MAPTRASLKREMAEAENVVEKKKAKEENGNGEKATEKREEENKV---VEKKL-------- 72
Query: 61 CNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVK 120
+ K G + N KI+SWNVAG+RA VKK+G+ ++K E DIF LQETKC E +P E+K
Sbjct: 73 ---ETKDGRQFNLKISSWNVAGVRAWVKKDGVKWVKGESPDIFTLQETKCSEKDIPQELK 129
Query: 121 MKFPEYKTYW-LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIR 178
EY W ++ G++GVGL++KVKP +V +G+G + ++ GR + + +
Sbjct: 130 -DLKEYHMSWNVAKSTKGFSGVGLFSKVKPLEVKFGIGVEEHDQEGRTITAEYDKFYLVS 188
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNA GLK L+ RL+W+ F ++ LD +KPV+L GD+NVSH IDLANP N ++
Sbjct: 189 TYVPNAQRGLKRLEYRLKWNSDFLAYIKSLDEKKPVVLCGDMNVSHHEIDLANPKGNKKN 248
Query: 239 AGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGF+ EERD + LL GFTD++R LYP TG YT+W+YM R++N G +YF
Sbjct: 249 AGFSQEERDGMTELLQSGFTDTYRDLYPDLTGQYTFWTYMG-NCRAKNVGWRLDYF 303
>gi|213512198|ref|NP_001135227.1| DNA-(apurinic or apyrimidinic site) lyase [Salmo salar]
gi|197631957|gb|ACH70702.1| APEX nuclease 1 [Salmo salar]
gi|209154634|gb|ACI33549.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
gi|209154684|gb|ACI33574.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
Length = 312
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 127/283 (44%), Positives = 163/283 (57%), Gaps = 11/283 (3%)
Query: 16 KSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKI 75
K +KK + E D D + + K P L + D +K G N KI
Sbjct: 3 KRAKKNEQEAGDGDHDNGTAPAAKKGKKVKEPEAPILYSDPPD---KMNSKDGRAANMKI 59
Query: 76 ASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KTYWLSS- 133
SWNV GLRA VKK+GLD+++ E D+ CLQETKC E LP E+ PE+ YW S
Sbjct: 60 TSWNVDGLRAWVKKKGLDWVRDEAPDVLCLQETKCAEKSLPDEI-TSMPEFPHKYWAGSD 118
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+GV + K +P KVTYG+G K EH GR + F + VPN+G GL L
Sbjct: 119 EKEGYSGVAMLCKTEPLKVTYGIG-KEEHDKEGRVITAEFPTFFLVTAYVPNSGRGLVRL 177
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R WD F +L LD KP++L GDLNV+H+ IDL N N ++AGFT EER+ F+
Sbjct: 178 DYRKTWDVEFKAYLSDLDKRKPLVLCGDLNVAHEEIDLKNSKGNKKNAGFTAEEREGFNQ 237
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTDSFR LYP++ AYT+W+YM +RS+N G +YF
Sbjct: 238 LLAAGFTDSFRELYPEQANAYTFWTYMM-NSRSKNVGWRLDYF 279
>gi|296090736|ref|NP_001171688.1| DNA-(apurinic or apyrimidinic site) lyase [Gallus gallus]
gi|194722849|dbj|BAG66138.1| APEX nuclease [Gallus gallus]
Length = 300
Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 118/277 (42%), Positives = 161/277 (58%), Gaps = 15/277 (5%)
Query: 20 KRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWN 79
KR + ED +A KS +A P +D ++ G NFK+ SWN
Sbjct: 3 KRSKKGEDGEAEVVSAKS---PREAAAPY--------VDPPVREETADGRPYNFKVTSWN 51
Query: 80 VAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP-KAGY 138
V GLRA V+K GL +++ E D+ CLQETKC +P E+ +W S+ ++GY
Sbjct: 52 VDGLRAWVRKGGLQWLQSEAPDVVCLQETKCGAESIPSELSQLPHLPHKFWGSAVGRSGY 111
Query: 139 AGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEW 197
+GVGL ++ P +VT+G+G + ++ GR + + + + VPN+G GL L R W
Sbjct: 112 SGVGLLSRTAPIRVTHGIGIEEHDAEGRVLTAEFPSVYVVSAYVPNSGRGLNRLQYRQRW 171
Query: 198 DKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGF 257
D F L +LDA+KPV+L GDLNV+H+ IDL NP +N RS GFT EERD+F +LLD GF
Sbjct: 172 DGAFKSFLQRLDAQKPVVLCGDLNVAHREIDLRNPKSNRRSPGFTQEERDAFGALLDGGF 231
Query: 258 TDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
DSFR LYP AYT+W+YM AR RN G +YF
Sbjct: 232 LDSFRLLYPDVPNAYTFWTYMGG-ARERNVGWRLDYF 267
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 147/223 (65%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RACVKK LDY DADIFCLQETK E Q + ++ Y+ YW
Sbjct: 1 MKLISWNVNGIRACVKKGFLDYFTDIDADIFCLQETKLQEGQ----INLELEGYEQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK KP +V YGLG + ++ GR + + + PN+ + L L
Sbjct: 57 AVKKGYSGTAIFTKQKPIEVKYGLGIEEHDQEGRVITLEFEDFYLVNVYTPNSQSELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ +F E+L LD KPVIL GDLNV+HK IDL NP TN ++AGFT EER+ +
Sbjct: 117 DYRMKWEDIFREYLKDLDNIKPVILCGDLNVAHKEIDLKNPKTNRKNAGFTDEERNKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTDSFR+LYP++ G+Y++WSYM K AR N+G +YF
Sbjct: 177 LLESGFTDSFRYLYPEKEGSYSWWSYMRK-ARENNSGWRIDYF 218
>gi|260808574|ref|XP_002599082.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
gi|229284358|gb|EEN55094.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
Length = 272
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/226 (50%), Positives = 145/226 (64%), Gaps = 5/226 (2%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
N KIASWNV GLR VKK G YI +ED DI CLQETKC E +P E Y YW
Sbjct: 13 NLKIASWNVDGLRGTVKKNGHAYIPQEDPDIICLQETKCTEKDVPKEFTATVEGYHGYWY 72
Query: 132 S-SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
S + K GYAG L +K KP KVTYG+G +++ GR + + + + VPNAG GL
Sbjct: 73 SPTEKKGYAGTALLSKTKPIKVTYGIGVDEHDDEGRVITAEFDDFYMVTAYVPNAGRGLV 132
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTIEERDS 248
LD R WD+ F +L KLD +KPV+L GDLNV+H IDL NP N ++ GFT +ER+
Sbjct: 133 RLDYRGTWDEAFTAYLKKLDKKKPVVLCGDLNVAHNEIDLKNPKGNKNKTPGFTDKEREG 192
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
F++LLD+GF DS+R LYP+ T YT+WSYM AR++N G +YF
Sbjct: 193 FTTLLDEGFKDSYRELYPEETDCYTFWSYMGG-ARAKNVGWRLDYF 237
>gi|375086371|ref|ZP_09732783.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
gi|374565408|gb|EHR36677.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
Length = 251
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRAC+ K ++ + DADIFCLQETK P ++++ P YK YW S+
Sbjct: 2 KFVSWNVNGLRACMNKGFMETFQTLDADIFCLQETKMQ----PHQLELDLPRYKQYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V+YGLG + ++H GR F + PN+ L+ LD
Sbjct: 58 EKKGYSGTAIFTKVEPLNVSYGLGIEEHDHEGRVITLEFDKFFMVCVYTPNSKRELERLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +LV+L+ +KPV++ GDLNV+HK IDL NP TN RSAGFT EER + L
Sbjct: 118 YRMQWEDAFRNYLVELNKQKPVVMCGDLNVAHKEIDLKNPKTNRRSAGFTDEERSKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+LYP +T Y++WSYM K AR N G +YF
Sbjct: 178 LQAGFVDTFRYLYPDKTSIYSWWSYMRK-ARENNAGWRIDYF 218
>gi|383754456|ref|YP_005433359.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366508|dbj|BAL83336.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 250
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRAC+KK ++ K DAD+FCLQETK P + + P YK YW S+
Sbjct: 2 KFISWNVNGLRACLKKGFMESFCKLDADVFCLQETKMQ----PEQAILDLPGYKQYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++++++P VTYGLG + ++H GR F + PN+ L+ L
Sbjct: 58 EKKGYSGTAVFSRIEPLHVTYGLGIEEHDHEGRVITLEFPEMFLVTVYTPNSKRELERLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F +L+KLD +KPVI+ GDLNV+H+ IDL NP TN +AGFT EER F L
Sbjct: 118 YRMEWEDAFRAYLMKLDEQKPVIVCGDLNVAHQEIDLKNPKTNHHNAGFTDEERGKFGEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR LYP RTG YT+WSY+ K AR N G +YF
Sbjct: 178 LDAGFIDTFRTLYPDRTGIYTWWSYLRK-ARDNNAGWRIDYF 218
>gi|327278208|ref|XP_003223854.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Anolis carolinensis]
Length = 314
Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 161/255 (63%), Gaps = 12/255 (4%)
Query: 43 KATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADI 102
+A GP+ + +K+ S KK L K+ SWNV G+RA VKK+G++++ +E+ DI
Sbjct: 35 EADGPILYEDPPDKLTSSNGKKYTL------KVTSWNVDGIRAWVKKKGVEWVSEENPDI 88
Query: 103 FCLQETKCHETQLPPEVKMKFPEY-KTYW-LSSPKAGYAGVGLYTKVKPNKVTYGLGTK- 159
CLQETKC E QLP +++ EY YW S K GY+GV L +KVKP +V YG+G +
Sbjct: 89 LCLQETKCAEKQLPADIR-DLAEYPHKYWACSEDKEGYSGVALLSKVKPLEVKYGIGEEE 147
Query: 160 NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGD 219
++ GR + + F + VPNAG GL L+ R WD F +L L A KP+IL GD
Sbjct: 148 HDKEGRVITAEFPSYFLVTSYVPNAGRGLVRLEYRQSWDVAFRSYLKGLAARKPLILCGD 207
Query: 220 LNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMS 279
LNV+H+ IDL NP N ++AGFT EER F+ LL++GF D+FRHLYP AYT+W+YM
Sbjct: 208 LNVAHEEIDLKNPKGNKKNAGFTPEERAGFTKLLEEGFVDTFRHLYPDTAYAYTFWTYMM 267
Query: 280 KTARSRNTGC-TNYF 293
ARS+N G +YF
Sbjct: 268 -NARSKNVGWRLDYF 281
>gi|327278210|ref|XP_003223855.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Anolis carolinensis]
Length = 306
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 151/230 (65%), Gaps = 6/230 (2%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY- 126
G++ K+ SWNV G+RA VKK+G++++ +E+ DI CLQETKC E QLP +++ EY
Sbjct: 46 GKKYTLKVTSWNVDGIRAWVKKKGVEWVSEENPDILCLQETKCAEKQLPADIR-DLAEYP 104
Query: 127 KTYW-LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
YW S K GY+GV L +KVKP +V YG+G + ++ GR + + F + VPNA
Sbjct: 105 HKYWACSEDKEGYSGVALLSKVKPLEVKYGIGEEEHDKEGRVITAEFPSYFLVTSYVPNA 164
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD F +L L A KP+IL GDLNV+H+ IDL NP N ++AGFT E
Sbjct: 165 GRGLVRLEYRQSWDVAFRSYLKGLAARKPLILCGDLNVAHEEIDLKNPKGNKKNAGFTPE 224
Query: 245 ERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F+ LL++GF D+FRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 225 ERAGFTKLLEEGFVDTFRHLYPDTAYAYTFWTYMM-NARSKNVGWRLDYF 273
>gi|449664158|ref|XP_002161039.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Hydra
magnipapillata]
Length = 352
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 158/259 (61%), Gaps = 12/259 (4%)
Query: 41 ENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDA 100
E K T +EK+ D+ G KI SWNVAGLRA V K GL+Y+ +ED
Sbjct: 56 EKKVTDLKDEKMETMPSDFESKTVTADGRTSTLKICSWNVAGLRAWVNKNGLNYVIEEDP 115
Query: 101 DIFCLQETKCHETQLPPEV-KMK-FPE--------YKTYWLSSPKAGYAGVGLYTKVKPN 150
D+ CLQETKC E LP +V +MK P+ Y YW ++ K G +GV L+ K+KP
Sbjct: 116 DVLCLQETKCTENDLPGQVLQMKNGPKVTNVSNSGYYMYWCNAKKKGCSGVSLWCKLKPL 175
Query: 151 KVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLD 209
KVTYGLG K ++ GR + + I VPN+G L LD R W+ + ++ +L
Sbjct: 176 KVTYGLGIKEHDSEGRLITAEFEKYYIITTYVPNSGQKLIRLDYRRIWNTDYKNYVGELK 235
Query: 210 AEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRT 269
+KPVI+ GD NV+H ID+ANP +N R+AGFT EER F++LL+ G+ D+FR L P++T
Sbjct: 236 KKKPVIMCGDFNVAHTEIDIANPNSNKRNAGFTEEERSDFTALLEDGYIDTFRKLNPEKT 295
Query: 270 GAYTYWSYMSKTARSRNTG 288
GAYT+W+YM ARS+N G
Sbjct: 296 GAYTFWTYMM-NARSKNKG 313
>gi|260881707|ref|ZP_05405068.2| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
gi|260848221|gb|EEX68228.1| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
Length = 253
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 143/223 (64%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRAC+KK ++ K DAD+F LQETK P + + P Y+ YW S
Sbjct: 3 MKCISWNVNGLRACLKKGFMESFVKLDADVFALQETKMQ----PEQAILDLPGYRQYWNS 58
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++++++P VTYGLG + ++H GR + +++ PN+ GL+ L
Sbjct: 59 AERKGYSGTAVFSRIEPLAVTYGLGIEEHDHEGRVITLEFPDCYFVTVYTPNSKRGLERL 118
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R+EW+ F +LV LDA+KPVI+ GDLNV+H IDL NP TN +AGFT EER F+
Sbjct: 119 AYRMEWEDAFRAYLVALDAKKPVIVCGDLNVAHTEIDLKNPKTNHHNAGFTDEERGKFTE 178
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF D+FR LYP RTG YT+WSY+ K AR N G +YF
Sbjct: 179 LLDAGFIDTFRALYPDRTGIYTWWSYLRK-ARDTNAGWRIDYF 220
>gi|45361461|ref|NP_989307.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
gi|39794455|gb|AAH64266.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|51703687|gb|AAH80950.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|89267865|emb|CAJ83004.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
Length = 316
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 149/230 (64%), Gaps = 6/230 (2%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G++ KI+SWNV G+RA +KK+GL+++++ED I CLQE KC E LPPE+K PEY
Sbjct: 56 GKKYTLKISSWNVDGIRAWIKKQGLNWVREEDPHIMCLQEIKCAEKLLPPEIK-DMPEYP 114
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ + P K GY+GV + K KP VTYG+G + ++ GR + + F I VPN+
Sbjct: 115 HKYWACPDEKEGYSGVAMLCKDKPLNVTYGIGIEEHDKEGRVITAEFDSFFLIAAYVPNS 174
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
GL LD R WD F +L LD++KP+IL GDLNV+H+ IDL NP TN ++ GFT +
Sbjct: 175 SRGLVRLDYRQRWDVDFRAYLKGLDSKKPLILCGDLNVAHQEIDLKNPKTNKKTPGFTPQ 234
Query: 245 ERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL +G+ DSFR LYP + AYT+W+YM AR++N G +YF
Sbjct: 235 ERQGFGELLAEGYLDSFRELYPDKPSAYTFWTYMM-NARAKNVGWRLDYF 283
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 147/224 (65%), Gaps = 7/224 (3%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
N K SWNV GLRAC+KK LD K +AD FCLQETK P ++++ P Y YW
Sbjct: 3 NLKYISWNVNGLRACIKKGFLDSFKNLNADCFCLQETKLQ----PHQIELNIPGYYQYWN 58
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
S+ K GY+G L+TK+KP V+YG+ + ++ GR + N F + PN+ L
Sbjct: 59 SAIKKGYSGTALFTKIKPISVSYGMNIEEHDQEGRLITAEFENHFLVVCYTPNSQRQLAR 118
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R++W+ F +L+KL KPVIL GDLNV+HK IDLANP++N ++AGFT +ER FS
Sbjct: 119 LEYRMKWENDFKNYLLKLTESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKFS 178
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL+ GFTD+FR+LYP + AY++WSY +K+ R RN G +YF
Sbjct: 179 TLLENGFTDTFRYLYPDKKDAYSWWSYFAKS-RERNIGWRIDYF 221
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 147/224 (65%), Gaps = 7/224 (3%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
N K SWNV GLRAC+KK LD K +AD FCLQETK P ++++ P Y YW
Sbjct: 3 NLKYISWNVNGLRACIKKGFLDSFKNLNADCFCLQETKLQ----PHQIELDIPGYYQYWN 58
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
S+ K GY+G L+TK+KP V+YG+ + ++ GR + N F + PN+ L
Sbjct: 59 SAIKKGYSGTALFTKIKPISVSYGMNIEEHDQEGRLITAEFKNHFLVVCYTPNSQRQLAR 118
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R++W+ F +L+KL KPVIL GDLNV+HK IDLANP++N ++AGFT +ER FS
Sbjct: 119 LEYRMKWENDFKNYLLKLTESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKFS 178
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL+ GFTD+FR+LYP + AY++WSY +K+ R RN G +YF
Sbjct: 179 TLLENGFTDTFRYLYPDKKDAYSWWSYFAKS-RERNIGWRIDYF 221
>gi|281417190|ref|ZP_06248210.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
gi|281408592|gb|EFB38850.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
Length = 251
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 144/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K LDY KK DADIFC+QE+K P +++++ Y YW +
Sbjct: 3 KLISWNVNGLRACINKGFLDYFKKADADIFCIQESKVQ----PGQIELELDGYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++T++KP V G+G +++ GR N + + PNA L+ LD
Sbjct: 59 ERKGYSGTAVFTRIKPLYVQNGIGIDEHDREGRVITLEFDNYYLVNVYTPNAKKELERLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +LV L A+KPVI+ GD+NV+HK IDL NP +N RSAGFT EER F+ L
Sbjct: 119 YRMKWEDDFRNYLVGLKAKKPVIVCGDMNVAHKEIDLKNPESNRRSAGFTDEERAKFTEL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR YP +TGAYT+WSYM AR+RN G +YF
Sbjct: 179 LNAGFIDTFRFFYPDKTGAYTWWSYMF-NARARNAGWRIDYF 219
>gi|390345498|ref|XP_789515.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Strongylocentrotus purpuratus]
Length = 342
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 155/232 (66%), Gaps = 5/232 (2%)
Query: 59 YSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPE 118
Y+ ++K++ GE N KI++WNV G++A +KK G+DY+ KE DIF QETK T+ PPE
Sbjct: 75 YTTDRKSESGEACNLKISAWNVGGMKAWIKKGGIDYLTKESPDIFFAQETKIDATKPPPE 134
Query: 119 VKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYI 177
+ +Y + ++ K GY+GV L++K +P VT G+G + ++ GR + + +++
Sbjct: 135 ADLD--DYHITYNAAEKKGYSGVALFSKKEPLSVTKGMGIEEHDKEGRLITAEYDSFYFV 192
Query: 178 RKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-T 236
VPN+ L LD R EWDK FH +L KLDA+KPVI GD+NV+H+ IDL NP +N
Sbjct: 193 GVYVPNSSRKLVRLDYRQEWDKDFHAYLKKLDAKKPVICCGDMNVAHEEIDLKNPKSNRN 252
Query: 237 RSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++ GFT +ER+ F+SLLD GF DSFRHLYP+ AY++W+YM R++N G
Sbjct: 253 KTPGFTDQEREGFTSLLDMGFVDSFRHLYPEEADAYSFWTYMG-NCRAKNVG 303
>gi|225420139|ref|ZP_03762442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
gi|225041196|gb|EEG51442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
Length = 251
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K LDY K+ DAD+FCLQETK E Q + + P Y YW +
Sbjct: 3 KLISWNVNGLRACVGKGFLDYFKEADADVFCLQETKLQEGQ----IDLDLPGYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YGLG + ++ GR + F + PN+ GL LD
Sbjct: 59 QKKGYSGTAMFTKEEPVSVRYGLGIEEHDMEGRVIAAEFQEYFVVTCYTPNSQDGLARLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F +L KL+ EKPVI GDLNV+HK IDL NP +N ++AGFT EER F+ L
Sbjct: 119 YRMEWENAFLAYLKKLEEEKPVIFCGDLNVAHKEIDLKNPKSNRKNAGFTDEERGKFTDL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+ YP R G Y++WSY +AR++N G +YF
Sbjct: 179 LGAGFIDTFRYFYPDREGIYSWWSYRF-SARAKNAGWRIDYF 219
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+KK L+Y + DIFC+QETK E Q + ++ P Y YW +
Sbjct: 2 KLISWNVNGLRACLKKGFLEYFNEVSGDIFCVQETKLQEGQ----IDLELPGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK++P V YG+G K++ GR + + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKIQPLTVQYGIGEAKHDKEGRVITLEFCDYYLVNVYTPNSQRELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL+W+ F +LV LD+EKPVI+ GDLNV+HK IDL NP N R+AGFT EER+ + L
Sbjct: 118 YRLQWEDAFKNYLVNLDSEKPVIVCGDLNVAHKEIDLKNPKNNKRNAGFTEEERNKLTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP GAYT+WSY++K AR RN G +YF
Sbjct: 178 LNAGFIDTFRYFYPDTEGAYTWWSYITK-ARERNAGWRIDYF 218
>gi|125972979|ref|YP_001036889.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|256004776|ref|ZP_05429751.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|385779105|ref|YP_005688270.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|419721683|ref|ZP_14248840.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
gi|419725225|ref|ZP_14252277.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|125713204|gb|ABN51696.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|255991226|gb|EEU01333.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|316940785|gb|ADU74819.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|380771412|gb|EIC05280.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|380782260|gb|EIC11901.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
Length = 251
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 144/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K LDY KK DADIFC+QE+K P +++++ Y YW +
Sbjct: 3 KLISWNVNGLRACINKGFLDYFKKADADIFCIQESKVQ----PGQIELELDGYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++T++KP V G+G +++ GR N + + PNA L+ LD
Sbjct: 59 ERKGYSGTAVFTRIKPLCVQNGIGIDEHDREGRVITLEFDNYYLVNVYTPNAKKELERLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +LV L A+KPVI+ GD+NV+HK IDL NP +N RSAGFT EER F+ L
Sbjct: 119 YRMKWEDDFRNYLVGLKAKKPVIVCGDMNVAHKEIDLKNPESNRRSAGFTDEERAKFTEL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR YP +TGAYT+WSYM AR+RN G +YF
Sbjct: 179 LNAGFIDTFRFFYPDKTGAYTWWSYMF-NARARNAGWRIDYF 219
>gi|291561139|emb|CBL39938.1| exodeoxyribonuclease III [butyrate-producing bacterium SS3/4]
Length = 284
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 146/222 (65%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K L+Y+K+ DADIFC+QE+K E Q V ++ P Y YW +
Sbjct: 36 KMISWNVNGLRACLGKGFLEYLKESDADIFCIQESKLQEGQ----VDLELPGYHQYWNYA 91
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P VTYGLG + ++H GR + + + PN+ GLK LD
Sbjct: 92 EKKGYSGTAMFTKEEPIAVTYGLGIEEHDHEGRVITAEFPEYYVVTCYTPNSQDGLKRLD 151
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L +L+ +KPVI GDLNV+H+ IDL NP TN ++AGF+ EER F+ L
Sbjct: 152 YRMQWEDAFRAYLKELETKKPVIFCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKFTEL 211
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + G Y++WSY +AR++N G +YF
Sbjct: 212 LEAGFVDTFRYFYPDQEGIYSWWSYRF-SARAKNAGWRIDYF 252
>gi|148225041|ref|NP_001085229.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
laevis]
gi|47937489|gb|AAH72056.1| MGC78928 protein [Xenopus laevis]
Length = 316
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 149/230 (64%), Gaps = 6/230 (2%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G++ KI+SWNV G+RA +KK+GL+++++ED I CLQE KC E LPP+VK PEY
Sbjct: 56 GKKYTLKISSWNVDGIRAWIKKQGLNWVREEDPHIMCLQEIKCAEKLLPPDVK-DMPEYP 114
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ + P K GY+GV + K KP VTYG+G + ++ GR + + F I +PN+
Sbjct: 115 HKYWACPDEKEGYSGVAMLCKDKPLNVTYGIGIEEHDKEGRVITAEFDSFFVIAAYIPNS 174
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
GL LD R WD F +L LD++KP+IL GDLNV+H+ IDL NP TN ++ GFT +
Sbjct: 175 SRGLVRLDYRQRWDVDFRAYLKGLDSKKPLILCGDLNVAHQEIDLKNPKTNKKTPGFTPQ 234
Query: 245 ERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL +G+ DSFR LYP + AYT+W+YM AR++N G +YF
Sbjct: 235 ERQGFGELLAEGYLDSFRELYPDKPSAYTFWTYMM-NARAKNVGWRLDYF 283
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 139/222 (62%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K +DY K DADIFC+QETK E Q+ E+ Y+ YW
Sbjct: 1 MKLISWNVNGLRACVNKGFIDYFKASDADIFCVQETKLQEGQICLELG---ESYRQYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++T+++P V YG+ E GR + + + PNA L L+
Sbjct: 58 AEKKGYSGTAVFTRIEPLSVRYGMEEDREPEGRMITLEFESFYLVTVYTPNAKRDLSRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F +L +LDA KPVI+ GDLNV+H+ +DL N +N ++GFT EERD + L
Sbjct: 118 YRLEWEERFRRYLQELDARKPVIVCGDLNVAHQEMDLKNAKSNHGNSGFTPEERDKMTRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FRH YP RT AYT+WS+M K R RN G +YF
Sbjct: 178 LDAGFTDTFRHRYPDRTDAYTWWSFMPKV-RERNIGWRIDYF 218
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 138/222 (62%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K +DY + DADIFC+QETK Q+ ++ PEY+ YW
Sbjct: 1 MKLVSWNVNGLRACVTKGFMDYFNEADADIFCVQETKLQAGQIELDLG---PEYQQYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++T++ P V YGL +E GR + + + PNA L LD
Sbjct: 58 AEKKGYSGTAVFTRIAPLSVRYGLEEDSEPEGRVITLEFEDFYLVNVYTPNAKRDLSRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F +L++LD KPVI+ GDLNV+H+ IDL N +N ++GFT+EER + L
Sbjct: 118 YRLEWEERFRTYLLQLDERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFRH YP RT Y++WSYM+K R RN G +YF
Sbjct: 178 LAAGFIDSFRHFYPDRTDVYSWWSYMAKV-RERNIGWRIDYF 218
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 145/222 (65%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV GLRACVKK LD +++ DADIFC+QETK E Q + ++ P+Y YW +
Sbjct: 3 QLVSWNVNGLRACVKKGFLDVMEQLDADIFCIQETKLQEGQ----IDLELPDYYQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK+KP V G+G +H GR + F + PN+ + L L
Sbjct: 59 EKKGYSGTAVFTKIKPLSVKNGIGVDEFDHEGRVITLEFDDYFLVTCYTPNSQSELARLS 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F E+L+KL+ +KPVIL GDLNV+H IDL NP TN ++AGFT EER+ F+ L
Sbjct: 119 YRMDWEENFREYLLKLEEDKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREKFTKL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP T AY++WSY + AR +N G +YF
Sbjct: 179 LEAGFIDTFRHFYPDVTEAYSWWSYRFR-AREKNAGWRIDYF 219
>gi|227522924|ref|ZP_03952973.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227089953|gb|EEI25265.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 252
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK+ + +K DAD FC+QETK E QL K+ P Y+ Y+ +
Sbjct: 2 KFISWNVNGLRAVVKKDFAEIFQKLDADFFCIQETKMQEGQL----KLDLPGYRQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K +P V+YG+ + +H GR N + + VPN+GA LK LD
Sbjct: 58 ERKGYSGTAIFAKDEPLTVSYGIQAPEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WDK FH +L +LD+ KPVIL GDLNV+H IDL NP +N +AGFT EER SF+ L
Sbjct: 118 FRMGWDKAFHAYLNQLDSHKPVILCGDLNVAHHEIDLKNPQSNHHNAGFTDEERQSFTKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD+GF D+FRH YP + Y++WSY + R RN G +YF
Sbjct: 178 LDQGFMDTFRHFYPDKEDIYSWWSYRFHS-RDRNAGWRIDYF 218
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 148/222 (66%), Gaps = 5/222 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K D+ K+ D+DIFC+QETK E Q+ E++ + Y+ YW +
Sbjct: 3 KLVSWNVNGLRACIGKGFWDFFKEVDSDIFCIQETKLQEGQV--ELEQELEGYEQYWNYA 60
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK+KP + G+G + +++ GR F + PN+ L+ L+
Sbjct: 61 VKKGYSGTAIFTKIKPVSSSCGIGIEEHDNEGRVITLEFDQYFLVNVYTPNSKRELERLE 120
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L +L+ KPVI+ GD+NV+HK ID+ NP +N RSAGFT+EER+ FS L
Sbjct: 121 YRMKWEDDFRIYLKQLEETKPVIICGDMNVAHKEIDIKNPRSNKRSAGFTMEEREKFSEL 180
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L++GF DS+R LYP +TGAYT+WSYM K AR RN G +YF
Sbjct: 181 LEQGFVDSYRTLYPDKTGAYTWWSYMFK-ARERNVGWRIDYF 221
>gi|320163204|gb|EFW40103.1| APEX nuclease [Capsaspora owczarzaki ATCC 30864]
Length = 429
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 152/237 (64%), Gaps = 5/237 (2%)
Query: 53 SLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHE 112
+L + Y+ ++ G+ NFKIA WNV GL+ +K+ L Y++ E D+ C+QETKC E
Sbjct: 158 ALKTLTYTTSRAAPNGKPINFKIACWNVNGLKNAIKEGCLQYLEYEKPDVLCIQETKCGE 217
Query: 113 TQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNI 171
++P + + P Y YW S+ K GYAG G+Y+K +P +V++GL +++ GR +
Sbjct: 218 GEIPADSAV--PGYYGYWYSAQKRGYAGTGMYSKTQPIRVSFGLNVPEHDTEGRVITAEF 275
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ + + VPN+G L+TL R WD F +L+ LDA+KPV+L GDLNV+H IDL N
Sbjct: 276 ADFYLVTAYVPNSGQKLETLPYRQTWDVAFRTYLLSLDAKKPVVLCGDLNVAHNEIDLKN 335
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P TN RSAGFT +ER+ F+++L F DSFR LYP+ + AY++WSY +R+ N G
Sbjct: 336 PKTNKRSAGFTPQEREGFTTILGTEFVDSFRVLYPEES-AYSFWSY-RHNSRALNVG 390
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 137/222 (61%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K +DY + DADIFC+QETK Q+ ++ PEY+ YW
Sbjct: 1 MKLVSWNVNGLRACVTKGFMDYFNEADADIFCVQETKLQAGQIELDLG---PEYQQYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++T++ P V YGL +E GR + + PNA L LD
Sbjct: 58 AEKKGYSGTAVFTRIAPLSVRYGLEEDSEPEGRVITLEFEGFYLVNVYTPNAKRDLSRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F +L++LD KPVI+ GDLNV+H+ IDL N +N ++GFT+EER + L
Sbjct: 118 YRLEWEERFRTYLLQLDERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFRH YP RT Y++WSYM+K R RN G +YF
Sbjct: 178 LAAGFIDSFRHFYPDRTDVYSWWSYMAKV-RERNIGWRIDYF 218
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 146/222 (65%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV GLRAC+ K +++ +AD+FC+QE+K Q + FP Y+ YW S+
Sbjct: 2 RLISWNVNGLRACMNKGFMEFFNSVNADVFCIQESKMQREQ----AEFDFPNYEEYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +++K+KP V Y +G ++ GR + + + + PN+ L+ L+
Sbjct: 58 EKKGYSGVAIFSKIKPLSVEYDMGIAHHDKEGRIITAEFSDFYLVNVYTPNSKRELERLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F L L+++KPVI+ GDLNV+HK IDL NP TN R+AGFT EER+ S+L
Sbjct: 118 YRMEWEDDFRTFLKNLESKKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMSAL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD++RH YP++ GAYT+WSYM K AR+ NTG +YF
Sbjct: 178 LDSGFTDTYRHFYPEKQGAYTWWSYMGK-ARANNTGWRIDYF 218
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
Length = 254
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 143/223 (64%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRAC+KK +D DAD FCLQETK P +++++ P Y YW S
Sbjct: 4 LKYISWNVNGLRACIKKGFMDAFNALDADCFCLQETKLQ----PHQIELELPGYHQYWNS 59
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P VTYGLG + ++ GR ++ + + + PN+ GL L
Sbjct: 60 AVKKGYSGTAIFTKEEPLSVTYGLGIEEHDQEGRLITADFGSHYLLCCYTPNSQRGLARL 119
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R+ W+K E++ KL AEKPVIL GDLNV+H+ ID+ANP +N ++AGFT EER +
Sbjct: 120 SYRMTWEKAMKEYMTKLAAEKPVILCGDLNVAHEDIDIANPASNHKNAGFTDEERGRMTD 179
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTDSFRHL+P AY++WSY +K AR RN G +YF
Sbjct: 180 LLAAGFTDSFRHLHPDEKDAYSWWSYFAK-ARERNVGWRIDYF 221
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 138/222 (62%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K LDY K DADIFC+QETK E Q+ E+ Y+ YW
Sbjct: 1 MKLISWNVNGLRACVNKGFLDYFKASDADIFCVQETKLQEGQIGIELG---EPYRKYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++T+++P V YG+ E GR + + + PNA L L+
Sbjct: 58 AEKKGYSGTAIFTRIEPQSVRYGMEEDAEPEGRIITLEFESFYLVTVYTPNAKRDLSRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F +L +LDA KPVI+ GDLNV+H+ IDL N +N ++GFT EERD + L
Sbjct: 118 YRLEWEERFRRYLQELDAHKPVIVCGDLNVAHQEIDLKNAKSNQGNSGFTPEERDKMTRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP RT AYT+WS+M K R RN G +YF
Sbjct: 178 LEAGFIDTFRHRYPDRTDAYTWWSFMPKV-RERNIGWRIDYF 218
>gi|227512799|ref|ZP_03942848.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227083999|gb|EEI19311.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
Length = 252
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK+ + +K DAD FC+QETK E QL K+ P Y+ Y+ +
Sbjct: 2 KFISWNVNGLRAVVKKDFAEIFQKLDADFFCIQETKMQEGQL----KLDLPGYRQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K +P V+YG+ + +H GR N + + VPN+GA LK LD
Sbjct: 58 ERKGYSGTAIFAKDEPLTVSYGIQAPEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WDK FH +L +LD+ KPVIL GDLNV+H IDL NP +N +AGFT EER SF+ L
Sbjct: 118 FRMGWDKAFHAYLNQLDSHKPVILCGDLNVAHYEIDLKNPQSNHHNAGFTDEERQSFTKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD+GF D+FRH YP + Y++WSY + R RN G +YF
Sbjct: 178 LDQGFMDTFRHFYPDKEDIYSWWSYRFHS-RDRNAGWRIDYF 218
>gi|227509865|ref|ZP_03939914.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190789|gb|EEI70856.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 252
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK+ + +K DAD FC+QETK E QL K+ P Y+ Y+ +
Sbjct: 2 KFISWNVNGLRAVVKKDFAETFQKLDADFFCIQETKMQEGQL----KLDLPGYRQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K +P V+YG+ + +H GR N + + VPN+GA LK LD
Sbjct: 58 ERKGYSGTAIFAKDEPLTVSYGIQAPEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WDK FH +L +LD+ KPVIL GDLNV+H IDL NP +N +AGFT EER SF+ L
Sbjct: 118 FRMGWDKAFHAYLNQLDSHKPVILCGDLNVAHHEIDLKNPKSNHHNAGFTDEERQSFTKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD+GF D+FRH YP + Y++WSY + R RN G +YF
Sbjct: 178 LDQGFMDTFRHFYPDKEDIYSWWSYRFHS-RDRNAGWRIDYF 218
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 147/222 (66%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLR+C+ K D+ K+ DADIFC+QETK E QL E++ Y+ YW +
Sbjct: 3 KLVSWNVNGLRSCIGKGFWDFFKEVDADIFCVQETKLQEGQLELEIE----GYEHYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK+KP + G+G + +++ GR F + PN+ L+ L+
Sbjct: 59 VKKGYSGTAIFTKIKPVSSSCGIGIEEHDNEGRVITLEFEEFFLVNVYTPNSKRELERLE 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F E+L +L+ KPVI+ GD+NV+H+ IDL NP +N RSAGFT+EER+ FS L
Sbjct: 119 YRMKWEDDFREYLKQLEQTKPVIICGDMNVAHQEIDLKNPRSNKRSAGFTMEEREKFSQL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR LYP +TGAYT+WSYM K+ R +N G +YF
Sbjct: 179 LEHGFVDTFRMLYPDKTGAYTWWSYMFKS-REKNAGWRIDYF 219
>gi|406027905|ref|YP_006726737.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
gi|405126394|gb|AFS01155.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
Length = 256
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VK + + KK DAD FC+QETK E QL ++ P Y+ Y+ +
Sbjct: 2 KFISWNVNGLRAAVKHDFAETFKKLDADFFCIQETKMQEGQL----ELDLPGYQQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK P VTYG+ + H GR + + + VPN+GAGLK LD
Sbjct: 58 ERKGYSGTAIFTKHAPLDVTYGINSDEFNHEGRAITLEYPDFYLVTSYVPNSGAGLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+K F+++L +LDA+KPVIL GDLNV+HK IDL NP +N +AGFT EER F++L
Sbjct: 118 FRMGWNKAFYQYLTELDAKKPVILCGDLNVAHKEIDLKNPQSNHHNAGFTDEERQDFTNL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH YP +T Y++WSY + R RN G +YF
Sbjct: 178 LKAGFMDTFRHFYPDQTDIYSWWSYRFHS-RDRNAGWRIDYF 218
>gi|150388422|ref|YP_001318471.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
gi|149948284|gb|ABR46812.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
Length = 251
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 140/223 (62%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RACVKK LDY + DADIFC+QE+K E Q +++ Y+ YW
Sbjct: 1 MKLVSWNVNGIRACVKKGFLDYFNEVDADIFCIQESKLQEGQ----IELDLEGYEQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY-GRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK KP V YG+G + + GR + + PN+ GL+ L
Sbjct: 57 AVKKGYSGTAVFTKEKPISVKYGVGEEEDEEEGRVLTLEFDQFYLVNVYTPNSKRGLERL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F HL +LDA KPVIL GDLNV+H+ IDL NP +N +SAGFT EER+ +
Sbjct: 117 DGRMIWEDEFRAHLKELDAIKPVILCGDLNVAHEEIDLKNPKSNKKSAGFTNEEREKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF DSFR+ YP GAY++WSYM K AR RN G +YF
Sbjct: 177 LLTSGFIDSFRYFYPDLEGAYSWWSYMGK-ARERNAGWRIDYF 218
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|386008552|ref|YP_005926830.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|386027157|ref|YP_005947933.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|386732521|ref|YP_006206017.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281392|ref|YP_006682290.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404287210|ref|YP_006693796.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405750132|ref|YP_006673598.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|405753007|ref|YP_006676472.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|405755941|ref|YP_006679405.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|406704564|ref|YP_006754918.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|417315430|ref|ZP_12102109.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|422809864|ref|ZP_16858275.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|424714659|ref|YP_007015374.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823542|ref|ZP_18248555.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|336023738|gb|AEH92875.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|378752065|gb|EHY62652.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|384391279|gb|AFH80349.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219332|emb|CBY70696.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|404222207|emb|CBY73570.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|404225141|emb|CBY76503.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|404228027|emb|CBY49432.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404246139|emb|CBY04364.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361594|emb|CBY67867.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|424013843|emb|CCO64383.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
Length = 251
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q +++ P YK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQ----IELDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKVEPLSVQYGLGVPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 118 YRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+ YP T AY++WSY AR+RNTG +YF
Sbjct: 178 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTGWRIDYF 218
>gi|334319618|ref|XP_001379263.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Monodelphis domestica]
Length = 320
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 148/231 (64%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E++LPPE++ P
Sbjct: 59 GKSSTLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSESKLPPELQ-DLPGLT 117
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ SSP K GY+GVGL ++ P VTYG+G + ++ GR + + VPNA
Sbjct: 118 YQYWSSPSDKEGYSGVGLLSRQCPLSVTYGIGEEEHDQEGRVIVAEFEAFVLVTAYVPNA 177
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L A+KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 178 GRGLVRLEYRQRWDEAFRKFLKGLSAKKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 237
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL TDSFRHLYP+ AYT+W+YM AR++N G +YF
Sbjct: 238 ERQGFGELLQAVPLTDSFRHLYPEAAYAYTFWTYM-MNARAKNVGWRLDYF 287
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC K D + DAD FCLQETK E QL + F Y +YW +
Sbjct: 3 KLISWNVNGLRACCDKGFRDIFTQLDADFFCLQETKMQEGQLD----LSFEGYTSYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P +VTYGLG +++H GR + F + PN+ GLK LD
Sbjct: 59 EKKGYSGTAIFTKHQPLQVTYGLGIDEHDHEGRVITLEMEKFFLVTVYTPNSQDGLKRLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WD F +L KLD KPV++ GDLNV+HK IDL NP TN +AGFT +ER+ F L
Sbjct: 119 YRMTWDDDFRAYLQKLDQSKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQLL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP++T Y++WSY K AR +N G +YF
Sbjct: 179 LDAGFIDTFRYFYPEQTNIYSWWSYRFK-AREKNAGWRIDYF 219
>gi|410456343|ref|ZP_11310205.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
gi|409928167|gb|EKN65287.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
Length = 250
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 138/223 (61%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACVKK LDY ++ DADIFC+QETK E Q + + Y YW
Sbjct: 1 MKLVSWNVNGLRACVKKGFLDYFQEVDADIFCVQETKLQEGQ----ISLDLDGYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK++P V YG+GT ++E GR + F + PN+ L +
Sbjct: 57 AIKKGYSGTAVFTKIEPISVRYGVGTDESEEEGRILTLEFDDFFLVNIYTPNSQRDLARI 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
RLEW+ EHL +LD KPVIL GDLNV+H+ IDL N +N ++GFT EER +S
Sbjct: 117 GYRLEWESRILEHLKELDKLKPVILCGDLNVAHQEIDLRNSKSNVGNSGFTDEERGKMTS 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF DS+RH YP + GAYT+WSYM K R RN G +YF
Sbjct: 177 LLSAGFVDSYRHFYPDQEGAYTWWSYMMK-VRERNIGWRIDYF 218
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K D+ DADIFC+QETK H P + ++ Y+ YW S+
Sbjct: 2 KLISWNVNGLRACLSKGFEDFFNTADADIFCIQETKMH----PDQAEIGLIGYEKYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T++ P VTYGL + ++ GR + F + PN+ L LD
Sbjct: 58 VKKGYSGTAVFTRIAPLSVTYGLNIEEHDQEGRIITLEFEDFFLVNVYTPNSKRELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L LD KPVI+ GD+NV+H+ ID+ NP TN R+AGFT EERD ++L
Sbjct: 118 YRMRWEDEFRTYLTALDQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKMTAL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD+FRH+YP + AYT+WSYM AR+RN G +YF
Sbjct: 178 LEAGFTDTFRHIYPDKIDAYTWWSYM-MNARARNIGWRIDYF 218
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 145/223 (65%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRAC K D + +AD FCLQETK E QL ++F Y++YW
Sbjct: 2 LKFISWNVNGLRACYDKGFADAFNRLEADFFCLQETKMQEGQLD----VQFEGYQSYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++KVKP VTYGLG + ++H GR + + + I PN+ L+ L
Sbjct: 58 AEKKGYSGTAIFSKVKPLSVTYGLGIEEHDHEGRVITLELESYYLITVYTPNSQEELRRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++WD F +L KL+ +KPVI+ GDLNV+HK IDL NP TN ++AGFT EER F++
Sbjct: 118 DYRMKWDDDFRAYLKKLEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFTT 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTD+FR+ YP++ G Y++WSY K AR +N G +YF
Sbjct: 178 LLESGFTDTFRYFYPEQEGIYSWWSYRFK-AREKNAGWRIDYF 219
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV+K L+Y ++ DADIFC+QETK E Q + + P Y YW +
Sbjct: 2 KLVSWNVNGLRACVRKGFLNYFEEVDADIFCVQETKLQEGQ----IDLNLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V YGLG + ++ GR + + + PN+ L LD
Sbjct: 58 EKKGYSGTAVFTKDKPLDVKYGLGIEEHDKEGRVITLEFEDFYLVNVYTPNSQRELTRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +LD+ KPVIL GDLNV+HK IDL NP+TN R+AGFT EER + L
Sbjct: 118 YRMTWEDEFRNYLKELDSIKPVILCGDLNVAHKEIDLKNPSTNRRNAGFTDEERGKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+ YP + AYT+WSYM K AR RN G +YF
Sbjct: 178 LGTGFIDTFRYFYPDKEDAYTWWSYMRK-ARDRNVGWRIDYF 218
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q +++ P YK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQ----IELDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKVEPLSVQYGLGIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 118 YRMTFEDAILEYVKNLDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+ YP T AY++WSY AR+RNTG +YF
Sbjct: 178 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTGWRIDYF 218
>gi|255024226|ref|ZP_05296212.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-208]
Length = 216
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 139/216 (64%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q +++ P YK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQ----IELDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKVEPLSVQYGLGVPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 118 YRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LD GF DSFR+ YP T AY++WSY AR+RNTG
Sbjct: 178 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTG 212
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K D+ DADIFC+QETK H P + ++ Y+ YW S+
Sbjct: 2 KLISWNVNGLRACLSKGFEDFFNTADADIFCIQETKMH----PDQAEIGLIGYEKYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T++ P VTYGL + ++ GR + F + PN+ L LD
Sbjct: 58 VKKGYSGTAVFTRITPLSVTYGLNIEEHDQEGRIITLEFEDFFLVNVYTPNSKRELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L LD KPVI+ GD+NV+H+ ID+ NP TN R+AGFT EERD ++L
Sbjct: 118 YRMRWEDEFRTYLTALDQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKMTAL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD+FRH+YP + AYT+WSYM AR+RN G +YF
Sbjct: 178 LEAGFTDTFRHIYPDKIDAYTWWSYMMN-ARARNIGWRIDYF 218
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 135/222 (60%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K LDY K+ DADIFCLQETK E Q+ ++ EY+ YW
Sbjct: 1 MKLVSWNVNGLRACVGKGFLDYFKEADADIFCLQETKLQEGQIELDLG---SEYEQYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++T++KP V YG+ E GR + + PNA L LD
Sbjct: 58 AEKKGYSGTAVFTRIKPLSVRYGMEEDYEPEGRIITLEFEQFYLVTVYTPNAKRDLSRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F +L LDA KPVI+ GDLNV+H PID+ N +N ++G+T+EER + L
Sbjct: 118 YRMEWEDRFRTYLTGLDAVKPVIVCGDLNVAHNPIDIKNAKSNEGNSGYTLEERGKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH YP R G Y++WSYM K R RN G +YF
Sbjct: 178 LASGFIDTFRHFYPDREGVYSWWSYMPKI-RERNIGWRIDYF 218
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 145/223 (65%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRAC K +D + +AD FCLQETK E QL KF Y +YW
Sbjct: 2 LKFISWNVNGLRACYDKGFVDVFHRLEADFFCLQETKMQEGQLDA----KFEGYHSYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++KVKP VTYGLG + ++H GR + + + I PN+ L+ L
Sbjct: 58 AEKKGYSGTAIFSKVKPLSVTYGLGIEEHDHEGRVITLELESFYLITVYTPNSQEELRRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F +L KL+ +KPVI+ GDLNV+HK IDL NP TN ++AGFT EER F++
Sbjct: 118 DYRMKWEDDFRAYLKKLEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERTKFTT 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTD+FR+ YP++ G Y++WSY K AR +N+G +YF
Sbjct: 178 LLESGFTDTFRYFYPEQEGIYSWWSYRFK-AREKNSGWRIDYF 219
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 145/223 (65%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRAC K +D + +AD FCLQETK E QL KF Y +YW
Sbjct: 2 LKFISWNVNGLRACYDKGFVDVFHRLEADFFCLQETKMQEGQLDA----KFEGYHSYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++KVKP VTYGLG + ++H GR + + + I PN+ L+ L
Sbjct: 58 AEKKGYSGTAIFSKVKPLSVTYGLGIEEHDHEGRVITLELESFYLITVYTPNSQEELRRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F +L KL+ +KPVI+ GDLNV+HK IDL NP TN ++AGFT EER F++
Sbjct: 118 DYRMKWEDDFRAYLKKLEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFTT 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTD+FR+ YP++ G Y++WSY K AR +N+G +YF
Sbjct: 178 LLESGFTDTFRYFYPEQEGIYSWWSYRFK-AREKNSGWRIDYF 219
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|386044090|ref|YP_005962895.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|386047434|ref|YP_005965766.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|386050759|ref|YP_005968750.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404284278|ref|YP_006685175.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404411083|ref|YP_006696671.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|405758833|ref|YP_006688109.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|345534425|gb|AEO03866.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|345537324|gb|AEO06764.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|346424605|gb|AEO26130.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404230909|emb|CBY52313.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|404233780|emb|CBY55183.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404236715|emb|CBY58117.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
Length = 251
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q +++ P YK YW +
Sbjct: 2 RLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQ----IELDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKVEPLSVQYGLGIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 118 YRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+ YP T AY++WSY AR+RNTG +YF
Sbjct: 178 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTGWRIDYF 218
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|422416297|ref|ZP_16493254.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q +++ P YK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQ----IELDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR + + + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKVEPLSVQYGLGVPEHDTEGRVITLEFEDFYMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 118 YRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+ YP T AY++WSY AR+RNTG +YF
Sbjct: 178 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTGWRIDYF 218
>gi|404413860|ref|YP_006699447.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|404239559|emb|CBY60960.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|441474667|emb|CCQ24421.1| Exodeoxyribonuclease [Listeria monocytogenes N53-1]
Length = 251
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q +++ P YK YW +
Sbjct: 2 RLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQ----IELDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKVEPLSVQYGLGIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 118 YRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+ YP T AY++WSY AR+RNTG +YF
Sbjct: 178 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTGWRIDYF 218
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 137/221 (61%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K LDY K+ DADIFC+QETK E Q+ E+ +Y+ YW +
Sbjct: 2 KLVSWNVNGLRACVNKGFLDYFKQTDADIFCVQETKLQEGQIELELG---SDYRQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GY+G ++T+++P V YG+ E GR + + + PNA L L
Sbjct: 59 QKKGYSGTAVFTRLEPLSVRYGIEEDEEPEGRIITLEFQHFYLVNVYTPNAKRDLSRLSY 118
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
RLEW++ F +L +LDA KPVI+ GDLNV+H+ IDL N +N ++GFT+EER + LL
Sbjct: 119 RLEWEERFRRYLQQLDAVKPVIICGDLNVAHQEIDLKNAKSNLGNSGFTLEERGKMTDLL 178
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GF DSFR YP RT Y++WSYM+K R RN G +YF
Sbjct: 179 AAGFIDSFRFFYPDRTDVYSWWSYMAKV-RERNIGWRIDYF 218
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 141/222 (63%), Gaps = 4/222 (1%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC++K +DY K DADIFC+QETK E Q E + Y +W +
Sbjct: 2 KLVSWNVNGLRACLQKGFMDYFKAIDADIFCIQETKLQENQKDIE-GLDLNGYYAFWNFA 60
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V+YG+GT ++ GR F + PN+ GL LD
Sbjct: 61 EKKGYSGTAVFTKYKPLSVSYGIGTPHHDKEGRVITLEYEKFFLVNTYTPNSQRGLTRLD 120
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F +L+KLD+ KPVIL GDLNV+H+ ID+ NP N R+AGFT EER+ + L
Sbjct: 121 YRMQWEEDFRSYLLKLDSLKPVILCGDLNVAHQEIDIKNPAANRRNAGFTDEEREKMTIL 180
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM AR +N G +YF
Sbjct: 181 LNSGFIDTFRYFYPDKKDAYTWWSYMH-NAREKNIGWRVDYF 221
>gi|423100921|ref|ZP_17088626.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
gi|370792563|gb|EHN60427.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
Length = 256
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q +++ P YK YW +
Sbjct: 7 KLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQ----IELDLPAYKDYWNYA 62
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR + + + PN+ A LK LD
Sbjct: 63 VKKGYSGTAIFTKVEPLSVQYGLGVPEHDTEGRVITLEFEDFYMVTVYTPNSQAELKRLD 122
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 123 YRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 182
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+ YP T AY++WSY AR+RNTG +YF
Sbjct: 183 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTGWRIDYF 223
>gi|427413104|ref|ZP_18903296.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
gi|425715920|gb|EKU78906.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
Length = 251
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 145/223 (65%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA V K ++ +K DAD+FCLQETK Q ++++ P Y+ YW S
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFEKLDADMFCLQETKLQLHQ----IELELPGYEQYWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T+VKP V YG+G + ++ GR + N + + PN+ L L
Sbjct: 57 AVKKGYSGTAIFTRVKPLNVIYGIGIEEHDQEGRVITAEYDNFYLVTCYTPNSQRELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W+ F +L++LDA+KPVIL GDLNV+H IDL NP TN ++AGFT EER+ +
Sbjct: 117 EYRMTWEDAFRAYLLELDAKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFTDEEREKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTD+FR LYP T AY++WSYM K AR RN G +YF
Sbjct: 177 LLNAGFTDTFRKLYPDVTDAYSWWSYMGK-ARDRNVGWRIDYF 218
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404408223|ref|YP_006690938.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404242372|emb|CBY63772.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
Length = 251
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y ++ D+DIFCLQETK E Q +++ P YK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFEEVDSDIFCLQETKLQEGQ----IELDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKVEPLSVQYGLGVPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 118 YRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+ YP T AY++WSY AR+RNTG +YF
Sbjct: 178 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTGWRIDYF 218
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q +++ P YK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQ----IELDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YG G +++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKVEPLSVQYGFGVPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 118 YRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+ YP T AY++WSY AR+RNTG +YF
Sbjct: 178 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTGWRIDYF 218
>gi|290562880|gb|ADD38834.1| DNA-apurinic or apyrimidinic site lyase [Lepeophtheirus salmonis]
Length = 317
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 152/236 (64%), Gaps = 4/236 (1%)
Query: 61 CNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYI-KKEDADIFCLQETKCHETQLPPEV 119
C + K + N KI SWNVAG+RA +KK L Y+ + E DIFCLQETKC ET++P E+
Sbjct: 49 CTQTQKGKKSCNLKITSWNVAGVRAWIKKGSLSYLLETEKPDIFCLQETKCSETKIPCEL 108
Query: 120 KMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIR 178
K +W + K GY+GV L++KVKP V GL +++ + GR + F +
Sbjct: 109 KELKDYPHQFWAFAKKEGYSGVALFSKVKPLDVQVGLQSQDHDEEGRIIIAEFEFFFLLT 168
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG L TLDKRL+WD L + + +L+ +KPVI GDLNV+H IDLANP TN ++
Sbjct: 169 TYVPNAGRKLVTLDKRLDWDLLLRKKMKELNKKKPVIASGDLNVAHTEIDLANPKTNQKN 228
Query: 239 AGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT EER F LL GF D++R L P++TGAYT+W+YM AR++N G +YF
Sbjct: 229 AGFTPEERAGFDDLLSLGFVDTYRKLNPEKTGAYTFWTYM-MNARAKNVGWRLDYF 283
>gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|386054035|ref|YP_005971593.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|346646686|gb|AEO39311.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
Length = 251
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q +++ P YK YW +
Sbjct: 2 RLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQ----IELDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKVEPLSVQYGLGIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 118 YRMTFEDAILEYVKNLDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+ YP T AY++WSY AR+RNTG +YF
Sbjct: 178 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTGWRIDYF 218
>gi|422413323|ref|ZP_16490282.1| exodeoxyribonuclease III, partial [Listeria innocua FSL S4-378]
gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q +++ P YK YW +
Sbjct: 4 KLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQ----IELDLPAYKDYWNYA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR + + + PN+ A LK LD
Sbjct: 60 VKKGYSGTAIFTKVEPLSVQYGLGVPEHDTEGRVITLEFEDFYMVTVYTPNSQAELKRLD 119
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 120 YRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 179
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+ YP T AY++WSY AR+RNTG +YF
Sbjct: 180 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTGWRIDYF 220
>gi|339443513|ref|YP_004709518.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
gi|338902914|dbj|BAK48416.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
Length = 289
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 144/235 (61%), Gaps = 7/235 (2%)
Query: 61 CNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVK 120
C +K K K SWNV G+RACV K LDY DADIFCLQETK E QL +++
Sbjct: 28 CIRKQKNRRRIGMKFISWNVNGIRACVNKGFLDYFHAADADIFCLQETKLQEGQLALDLE 87
Query: 121 MKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRK 179
F YW + K GY+G ++TK +P V+YGLG + ++ GR +++
Sbjct: 88 GYFQ----YWNYAEKKGYSGTAVFTKEEPLSVSYGLGIEAHDQEGRVITLEYETFYFVTV 143
Query: 180 NVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSA 239
PN+ + LK LD R+EW+ F +L LD EKPVI+ GD+NV+H+ IDL NP TN ++A
Sbjct: 144 YTPNSQSELKRLDYRMEWEDDFRAYLTGLDREKPVIVCGDMNVAHQEIDLKNPKTNRKNA 203
Query: 240 GFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GFT EER F+ LLD G+ D++R+ YP + G Y++WSY K AR +N G +YF
Sbjct: 204 GFTDEERQKFTELLDSGWIDTWRYFYPDQEGVYSWWSYRFK-AREKNAGWRIDYF 257
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC K + + DAD FCLQETK E QL + F Y +YW +
Sbjct: 2 KLISWNVNGLRACCDKGFREAFQTLDADFFCLQETKMQEGQLD----LSFEGYTSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T +KP VTYGLG ++H GR + N + + PN+ GLK LD
Sbjct: 58 EKKGYSGTAIFTHLKPLNVTYGLGIDVHDHEGRVITLEMDNFYLVTVYTPNSQDGLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L++LD +KPV++ GDLNV+HK IDL NP TN +AGFT +ER+ F L
Sbjct: 118 YRMTWEDDFRNYLLELDKKKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQIL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP++TG Y++WSY K AR +N G +YF
Sbjct: 178 LDAGFIDTFRYFYPEQTGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|398816273|ref|ZP_10574926.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
gi|398032975|gb|EJL26295.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
Length = 254
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 140/221 (63%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K DY K+ +ADIFCLQETK E Q+ E+ EY YW +
Sbjct: 3 KLISWNVNGLRACVNKGFYDYFKEANADIFCLQETKLQEGQIEMEIG---EEYHQYWNYA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GY+G ++T+++P V YGL +E GR + + + PNA L LD
Sbjct: 60 EKKGYSGTAVFTRMEPLSVRYGLEEDHEPEGRVITLEFQDFYLVTVYTPNAKRDLSRLDY 119
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
RLEW+ F +L++LDA+KPV++ GDLNV+H+ IDL N +N ++GFT EER+ +SLL
Sbjct: 120 RLEWEDRFRNYLLQLDAKKPVVVCGDLNVAHQEIDLKNAKSNRNNSGFTPEEREKMTSLL 179
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GF D++R+ YP +T AYT+WS+M K R RN G +YF
Sbjct: 180 AAGFVDTYRYFYPDQTDAYTWWSFMPKV-RERNIGWRIDYF 219
>gi|331702430|ref|YP_004399389.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
gi|329129773|gb|AEB74326.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
Length = 256
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VK + + ++ DAD FC+QETK E QL ++ P Y+ Y+ +
Sbjct: 2 KFISWNVNGLRAAVKHDFAETFQQLDADFFCIQETKMQEGQL----ELDLPGYQQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK P VTYG+ + +H GR + + + VPN+GAGLK LD
Sbjct: 58 ERKGYSGTAIFTKHAPMHVTYGINSDEFDHEGRAITLEYPDFYLVTSYVPNSGAGLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+K F+++L +LDA+KPVIL GDLNV+HK I+L NP +N +AGFT EER F+ L
Sbjct: 118 FRMGWNKAFYQYLTELDAKKPVILCGDLNVAHKEIELKNPQSNHHNAGFTDEERQDFTKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH YP +T Y++WSY + R RN G +YF
Sbjct: 178 LKAGFMDTFRHFYPDQTDIYSWWSYRFHS-RDRNAGWRIDYF 218
>gi|365854004|ref|ZP_09394256.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
gi|363711540|gb|EHL95270.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
Length = 250
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK+ K DAD F +QETK E QL ++ P Y Y+ +
Sbjct: 2 KFISWNVNGLRAVVKKDFAATFNKLDADFFSIQETKMQEGQL----ELDLPGYHQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G L+ K +P V YG+ + +H GR + + + VPN+GAGLK LD
Sbjct: 58 ERKGYSGTALFAKQEPMSVMYGIQSDEFDHEGRAITLEYPDFYLVTSYVPNSGAGLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WD F ++L +LD EKPVIL GDLNV+HK IDL NP +N +AGFT EERDSF+
Sbjct: 118 FRMGWDAAFQDYLSRLDKEKPVILCGDLNVAHKTIDLKNPQSNHHNAGFTDEERDSFTRF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFRH YP Y++WSY AR RN G +YF
Sbjct: 178 LDMGFMDSFRHFYPDMEDIYSWWSYRFH-ARDRNAGWRIDYF 218
>gi|330836714|ref|YP_004411355.1| exodeoxyribonuclease III [Sphaerochaeta coccoides DSM 17374]
gi|329748617|gb|AEC01973.1| exodeoxyribonuclease III Xth [Sphaerochaeta coccoides DSM 17374]
Length = 252
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 135/216 (62%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+R+C+ K LDY DADIFCLQETK E Q E+ P+Y YW +
Sbjct: 3 KFVSWNVNGIRSCLGKGFLDYFFSTDADIFCLQETKLQEGQHDIEL----PDYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY-GRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G L++K KP +VT+G+ E GR + F + PN+ L LD
Sbjct: 59 QKKGYSGTALFSKEKPVRVTFGIAPFIEDAEGRVITAEYPAYFLVCVYTPNSQRELLRLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++WD F +++ L+A KPV + GDLNV+HK IDL NP +N R+AGFT EERD FS
Sbjct: 119 YRMKWDDAFRAYILSLEAMKPVFVCGDLNVAHKEIDLKNPKSNVRNAGFTQEERDKFSLF 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LD GFTDSFRHLYP Y++WSYM+ AR++N G
Sbjct: 179 LDAGFTDSFRHLYPHVIDRYSWWSYMA-NARAKNIG 213
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 141/222 (63%), Gaps = 4/222 (1%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC++K +DY K DADIFC+QETK E Q E + Y +W +
Sbjct: 2 KLVSWNVNGLRACLQKGFMDYFKAIDADIFCIQETKLQENQKDIE-GLDLNGYYAFWNFA 60
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V+YG+GT ++ GR F + PN+ GL L+
Sbjct: 61 EKKGYSGTAVFTKYKPLSVSYGIGTPHHDKEGRVITLEYKKFFLVNAYTPNSQRGLTRLN 120
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW++ F +L+KLD+ KPVIL GDLNV+H+ ID+ NP N R+AGFT EER+ + L
Sbjct: 121 YRMEWEEDFRSYLLKLDSVKPVILCGDLNVAHQEIDIKNPAANRRNAGFTDEEREKMTIL 180
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM AR +N G +YF
Sbjct: 181 LNSGFIDTFRYFYPDKKDAYTWWSYMH-NAREKNIGWRVDYF 221
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 147/222 (66%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K D+ K+ DADIFC+QETK E Q ++++ Y+ YW +
Sbjct: 3 KLVSWNVNGLRACIGKGFWDFFKEVDADIFCVQETKLQEGQ----IELELEGYEHYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK+KP + G+G + +++ GR F + PN+ L+ L+
Sbjct: 59 VKKGYSGTAIFTKIKPVSSSCGIGIEEHDNEGRVITLEFEEYFLVNVYTPNSKRELERLE 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L +L+ KPVI+ GD+NV+H+ ID+ NP +N RSAGFT+EER+ FS L
Sbjct: 119 YRMKWEDDFRVYLKQLEQTKPVIICGDMNVAHQEIDIKNPRSNKRSAGFTMEEREKFSEL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L++GF D+FR LYP +TGAYT+WSYM K AR +N G +YF
Sbjct: 179 LEQGFVDTFRTLYPDKTGAYTWWSYMFK-AREKNVGWRIDYF 219
>gi|351701700|gb|EHB04619.1| DNA-(apurinic or apyrimidinic site) lyase [Heterocephalus glaber]
Length = 318
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/284 (42%), Positives = 164/284 (57%), Gaps = 14/284 (4%)
Query: 14 EEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNF 73
E+ KR+ E + S KK + E GP+ + D K + G+
Sbjct: 12 EDGEEPKREPEAKKSKVGAKKNEK---EAAGDGPVLYE------DPPDKKTSPSGKSATL 62
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS- 132
KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ YW +
Sbjct: 63 KICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSGLSHQYWSAP 122
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
S K GY+GVGL ++ P KVTYG+G + ++ GR + + + VPNAG GL L
Sbjct: 123 SDKEGYSGVGLLSRQCPLKVTYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRL 182
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +ER F
Sbjct: 183 EYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGE 242
Query: 252 LLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL TDSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 243 LLQAVPLTDSFRHLYPNAAYAYTFWTYMM-NARSKNVGWRLDYF 285
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 138/222 (62%), Gaps = 6/222 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K LDY + DAD FCLQETK E Q+ E+ Y +W +
Sbjct: 2 KFVSWNVNGLRASVNKGFLDYFNEMDADFFCLQETKLQEGQIKLELG---EAYHLFWHYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY-GRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP ++YGLG ++E GR N + + PNA L LD
Sbjct: 59 EKKGYSGTAIFTKHKPLSISYGLGEEDEDTEGRVITLEYENFYLVTVYTPNARRDLSRLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W+++F +L+KLD KPVI+ GDLNV+H+ IDL N +N ++GFT EER+ + L
Sbjct: 119 FRLAWEEMFRGYLIKLDEHKPVIVCGDLNVAHQDIDLKNAKSNRGNSGFTDEEREKMTRL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+LYP RT AYT+WS+M K R RN G +YF
Sbjct: 179 LDAGFIDSFRYLYPDRTDAYTWWSFMPKI-RERNVGWRIDYF 219
>gi|282880102|ref|ZP_06288822.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
gi|281305975|gb|EFA98015.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
Length = 249
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 144/222 (64%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACVKK + ++ DAD FCLQETK E QL ++FP Y +YW +
Sbjct: 2 KFISWNVNGLRACVKKNFQESFQQLDADFFCLQETKMQEGQLD----LQFPGYTSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YTK KP V+YGLG + ++ GR + + F I VPN+ LK LD
Sbjct: 58 EKKGYSGTAIYTKHKPIHVSYGLGIEEHDQEGRVITLEMEDFFLITVYVPNSQDELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F ++ +LD KPVI+ GDLNV+H+ IDL NP TN R+AGFT EER+ + L
Sbjct: 118 YRMKWEDDFRAYITQLDQIKPVIICGDLNVAHEEIDLKNPKTNKRNAGFTDEERNKMTRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+LYP++ Y++WSY + AR +N G +YF
Sbjct: 178 LDNGFIDTFRYLYPEQI-TYSWWSYRFR-AREKNAGWRIDYF 217
>gi|153815015|ref|ZP_01967683.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
gi|145847583|gb|EDK24501.1| exodeoxyribonuclease III [Ruminococcus torques ATCC 27756]
Length = 252
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV+K LD+ + DADIFC+QE+K E QL ++ P Y YW +
Sbjct: 4 KFVSWNVNGIRACVQKGFLDFFTEADADIFCIQESKMQEGQL----ELDLPGYHQYWNYA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P VTYG+G + ++ GR + +++ PN+ L LD
Sbjct: 60 VKKGYSGTAVFTKKEPLSVTYGIGIEEHDQEGRVITCEFEDFYFVTVYTPNSQNELARLD 119
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L KL+ +KPVI+ GD+NV+HK IDL NP TN ++AGFT EER F+ L
Sbjct: 120 YRMRWEDDFRMYLKKLEEKKPVIVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERGKFTEL 179
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP R G Y++WSY +AR++N G +YF
Sbjct: 180 LDAGFIDTFRYFYPDREGIYSWWSY-RFSARAKNAGWRIDYF 220
>gi|317501545|ref|ZP_07959741.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088593|ref|ZP_08337504.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440482|ref|ZP_08620069.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
gi|316897056|gb|EFV19131.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407550|gb|EGG87050.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012927|gb|EGN42818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
Length = 250
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV+K LD+ + DADIFC+QE+K E QL ++ P Y YW +
Sbjct: 2 KFVSWNVNGIRACVQKGFLDFFTEADADIFCIQESKMQEGQL----ELDLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P VTYG+G + ++ GR + +++ PN+ L LD
Sbjct: 58 VKKGYSGTAVFTKKEPLSVTYGIGIEEHDQEGRVITCEFEDFYFVTVYTPNSQNELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L KL+ +KPVI+ GD+NV+HK IDL NP TN ++AGFT EER F+ L
Sbjct: 118 YRMRWEDDFRMYLKKLEEKKPVIVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP R G Y++WSY +AR++N G +YF
Sbjct: 178 LDAGFIDTFRYFYPDREGIYSWWSYRF-SARAKNAGWRIDYF 218
>gi|345861274|ref|ZP_08813541.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
gi|344325629|gb|EGW37140.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
Length = 250
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 143/223 (64%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACVK LD+ KE+ADIFC+QETK E Q+P V+ Y YW +
Sbjct: 2 KLISWNVNGIRACVKNGFLDFFAKENADIFCIQETKVQEEQIPFRVE----GYYQYWNFA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G +++K++PNK+ YG+G K EH GR + + PN+ GL L
Sbjct: 58 QKKGYSGTAIFSKMEPNKIVYGMG-KEEHDQEGRVITLEFGEYYVVTVYTPNSQRGLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R++W++ F +L L+ KPVI+ GDLNV+H IDL NP+TN ++AGF+ EER+ F
Sbjct: 117 EYRMKWEEDFLNYLKDLENSKPVIVCGDLNVAHTEIDLKNPSTNRKNAGFSAEERNKFDE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L++ GF D+FR YP +T AYT+WSYM AR+ N G +YF
Sbjct: 177 LMNNGFVDTFRFFYPNKTEAYTWWSYMF-NARANNAGWRIDYF 218
>gi|367462704|gb|ADJ96599.2| DNA repair enzyme APEX-1 [Camelus dromedarius]
Length = 318
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 164/272 (60%), Gaps = 11/272 (4%)
Query: 28 SDANTKKTKSGS--VENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRA 85
++ KK+K+G+ E +A G E +L + D K + G+ KI SWNV GLRA
Sbjct: 19 TEPEAKKSKTGAKKTEKEAAG---EGAALYE-DPPDQKTSPSGKSATLKICSWNVDGLRA 74
Query: 86 CVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS-SPKAGYAGVGLY 144
+KK+GLD++K+E DI CLQETKC E +LPPE++ YW + S K GY+GVGL
Sbjct: 75 WIKKKGLDWVKEEAPDILCLQETKCSENKLPPELQELSGLPHQYWSAPSDKEGYSGVGLL 134
Query: 145 TKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHE 203
++ P KV+YG+G + ++ GR + + VPNAG GL L+ R WD+ F +
Sbjct: 135 SRQCPIKVSYGIGEEEHDQEGRVIVAEFDAFVLVTVYVPNAGRGLVRLEYRQRWDEAFRK 194
Query: 204 HLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDSFR 262
L L + KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL DSFR
Sbjct: 195 FLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFR 254
Query: 263 HLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
HLYP AYT+W+YM ARS+N G +YF
Sbjct: 255 HLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 285
>gi|345314093|ref|XP_001516262.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Ornithorhynchus anatinus]
Length = 320
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 145/232 (62%), Gaps = 9/232 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVK--MKFPE 125
G+ KI SWNV GLRA VKK+GLD++++E DI CLQETKC E++LPPE+K FP
Sbjct: 59 GQPATLKICSWNVDGLRAWVKKKGLDWVREEAPDILCLQETKCAESKLPPELKDLSDFPH 118
Query: 126 YKTYWLS-SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPN 183
YW + + K GY+GVGL ++ +P V+YG+G + ++ GR + + VPN
Sbjct: 119 --RYWAAPADKEGYSGVGLLSRRRPLSVSYGIGEEEHDQEGRVIVAEFEAFVLVTVYVPN 176
Query: 184 AGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTI 243
+G GL LD R WD+ F L A KP++L GDLNV+H+ IDL NP N ++AGFT
Sbjct: 177 SGRGLVRLDYRQRWDQAFRRFLQAQAARKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTP 236
Query: 244 EERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 237 QERQGFGELLGTVDLADSFRHLYPAAAYAYTFWTYM-MNARSKNVGWRLDYF 287
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 132/222 (59%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K Y+K+ DADIFC+QETK E Q+ E EY YW
Sbjct: 1 MKLISWNVNGLRACVTKGFYTYLKETDADIFCVQETKLQEGQILME---NMEEYAQYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TK+KP V YGL E GR + + PN L L
Sbjct: 58 AEKKGYSGTAIFTKIKPLSVHYGLEENEEPEGRTITLEFEKFYLVNVYTPNTKRDLSRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW+ F +L +LDA+KPVI+ GDLNV+H+ IDL N N +AGFT EERD S L
Sbjct: 118 YRLEWEDRFRSYLQQLDAQKPVIICGDLNVAHQEIDLKNAKANYGNAGFTPEERDRMSQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP RT Y++WSYM K R RN G +YF
Sbjct: 178 LNAGFIDTFRYFYPDRTDVYSWWSYMPK-VRERNIGWRIDYF 218
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q+ ++K YK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQIELDLKA----YKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKVEPLSVQYGLGIPEHDTEGRVITLEFEAFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 118 YRMTFEDAILEYIKNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR+ YP T AY++WSY AR+RNTG +YF
Sbjct: 178 LDAGFIDSFRYFYPDLTDAYSWWSY-RMNARARNTGWRIDYF 218
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RAC+KK ++Y + +DADIFCLQETKC Q V++ Y YW
Sbjct: 1 MKLISWNVNGIRACLKKGFMEYFEAQDADIFCLQETKCSAGQ----VELDLKGYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P V+YGLG + ++ GR + + + PN+ L+ L
Sbjct: 57 AVKKGYSGTAIFTKKEPISVSYGLGIEEHDQEGRVITLEFEDFYMVTVYTPNSKNELERL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L KL+ KPV++ GD+NV+H+ IDL NP TN R+AGFT EER F+
Sbjct: 117 DYRMVWEDEFRSYLAKLNEAKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERSKFTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTDSFR+LYP R AY++WSY + AR NTG +YF
Sbjct: 177 LLKAGFTDSFRYLYPDRLHAYSWWSYRA-NARKNNTGWRIDYF 218
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 145/222 (65%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACV+K LD+ + DADIFC+QETK E QL E++ Y YW +
Sbjct: 2 KLISWNVNGIRACVQKGFLDFFHEADADIFCIQETKMQEGQLNLELE----RYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + +++ PN+ + L LD
Sbjct: 58 VKKGYSGTAVFTKKEPLSVSYGLGIEEHDQEGRVITCEFEDFYFVTVYTPNSQSELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KL+ +KPVI+ GDLNV+HK IDL NP TN ++AGFT EER F+ L
Sbjct: 118 YRMKWEDDFRAYLKKLEKKKPVIVTGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP + G Y++WSY +AR++N G +YF
Sbjct: 178 LDAGFIDTFRYFYPDQEGIYSWWSYRF-SARAKNAGWRIDYF 218
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC K + + DAD FCLQETK E QL + F Y +YW +
Sbjct: 4 KLISWNVNGLRACCDKGFREIFNELDADFFCLQETKMQEGQLD----LAFEGYTSYWNYA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+ +P VTYGLG +++H GR + N + + PN+ GLK LD
Sbjct: 60 EKKGYSGTAIFTRHQPLSVTYGLGIDEHDHEGRVITLEMENFYLVTVYTPNSQDGLKRLD 119
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W++ F ++L++LD +KPV++ GDLNV+HK IDL NP TN +AGFT +ER+ F L
Sbjct: 120 YRMTWEEDFRKYLLQLDRQKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQLL 179
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FRH YP + Y++WSY K AR +N G +YF
Sbjct: 180 LDAGFIDTFRHFYPTQENIYSWWSYRFK-AREKNAGWRIDYF 220
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACVKK LD+ K+ DADIFCLQETK E Q ++++ Y YW +
Sbjct: 2 KLISWNVNGIRACVKKGFLDFFKETDADIFCLQETKLQEGQ----IELELEGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P V+YGLG + ++ GR N + + PN+ L LD
Sbjct: 58 ERKGYSGTAIFTKQEPLSVSYGLGIEEHDQEGRVITLEFDNFYMVTVYTPNSKNELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L++L+ KPVI+ GDLNV+H+ IDL NP TN ++AGFTIEER S+L
Sbjct: 118 YRMVWEDEFRSYLLRLNETKPVIVCGDLNVAHQEIDLKNPKTNQKNAGFTIEERTKMSTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR YP+ GAY++WSY AR N G +YF
Sbjct: 178 LDSGFIDTFRFFYPELEGAYSWWSY-RFNARKNNAGWRIDYF 218
>gi|375364493|ref|YP_005132532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421729528|ref|ZP_16168658.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371570487|emb|CCF07337.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407076498|gb|EKE49481.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 252
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 143/218 (65%), Gaps = 7/218 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRA +KK ++ Y+++ ADI CLQETK + Q V ++ Y YW
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETKADILCLQETKVQDGQ----VSLQLEGYHDYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G +++K KP V YGLG + + GR N F + PNA GL+
Sbjct: 57 YAVKKGYSGTAVFSKEKPLHVFYGLGIDDHDQEGRVITLEFENLFVVNCYTPNAKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
+D RL+W+ F E+L KLD +KPVIL GDLNV+H+ IDL NP N ++AGF+ +ER++FS
Sbjct: 117 IDYRLQWEADFKEYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSDQEREAFS 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+LL+ GFTDSFR+LYP R GAY++WSY + AR +N G
Sbjct: 177 ALLNTGFTDSFRYLYPDREGAYSWWSYRT-NAREKNIG 213
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRAC +K + DAD FCLQETK E QL ++F Y++YW +
Sbjct: 2 KFISWNVNGLRACCEKGFKESFAALDADFFCLQETKMQEGQL----DLEFEGYRSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++++ P VTYGLG + ++ GR + + F + PN+ GLK LD
Sbjct: 58 EKKGYSGTAIFSRHAPLNVTYGLGLEEHDREGRVITLEMPDFFLVTVYTPNSQDGLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F +L++LD KPVI+ GDLNV+H+ IDL NP +N ++AGFT EER+ F L
Sbjct: 118 YRMQWEEAFRAYLLQLDTRKPVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGIL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR YP R G Y++WSY K AR +N G +YF
Sbjct: 178 LDSGFTDTFRFFYPDREGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|225026087|ref|ZP_03715279.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
gi|224956574|gb|EEG37783.1| exodeoxyribonuclease III [Eubacterium hallii DSM 3353]
Length = 250
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 145/223 (65%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWLS 132
K+ SWNV GLRACVKK D+ K+ DADIFC+QETK E Q+ PE Y+ YW
Sbjct: 2 KLISWNVNGLRACVKKGFEDFFKEADADIFCVQETKLQEGQIDFA-----PEGYECYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK P KV G+G + ++ GR + F++ PN+ + LK L
Sbjct: 57 AEKKGYSGTAVFTKKHPLKVWNGIGMEEHDQEGRVITLEFEDFFFVTVYTPNSQSELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F E+L +LD EKPVI+ GDLNV+H+ IDL NP TN ++AGFT EER+ F+
Sbjct: 117 DYRMKWEDDFREYLQELDKEKPVIMTGDLNVAHEEIDLKNPKTNKKNAGFTQEERNKFTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF DSFR+L P+ GAYT+WSY K AR ++ G +YF
Sbjct: 177 LLGAGFVDSFRYLNPELAGAYTWWSYRFK-AREKDAGWRIDYF 218
>gi|340758618|ref|ZP_08695204.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
Length = 253
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA V+K LDY K E+ADIFC+QETK E Q +++ Y YW +
Sbjct: 2 KLISWNVNGLRAAVQKGFLDYFKNENADIFCIQETKLQEGQ----IELDLEGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP +V+YGLG + ++ GR + + I PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKKKPIEVSYGLGIEEHDKEGRVITLEYEDFYMITVYTPNSQEELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +++KLD KPVI+ GDLNV+HK IDL NP +N ++AGF+ EER F+ L
Sbjct: 118 YRMSWEDEFRNYVMKLDKLKPVIICGDLNVAHKEIDLKNPKSNRKNAGFSDEERAKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFRH YP+ TGAY++WSY AR N G +YF
Sbjct: 178 LENGFIDSFRHFYPEVTGAYSWWSYRF-NARKNNAGWRIDYF 218
>gi|348577629|ref|XP_003474586.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cavia
porcellus]
Length = 318
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 163/284 (57%), Gaps = 14/284 (4%)
Query: 14 EEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNKKNKLGEEPNF 73
E+ KR+ E + S A KK + E GP + D K + G+
Sbjct: 12 EDGEEPKREPEAKKSKAGPKKNEK---EEAGEGPALYE------DPPDKKTSPSGKSATL 62
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS- 132
KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ YW +
Sbjct: 63 KICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSELSHQYWSAP 122
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
S K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNAG GL L
Sbjct: 123 SDKEGYSGVGLLSRQCPIKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRL 182
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +ER F
Sbjct: 183 EYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGE 242
Query: 252 LLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 243 LLQAVPLADSFRHLYPNAAYAYTFWTYMM-NARSKNVGWRLDYF 285
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 133/222 (59%), Gaps = 6/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K +Y + DADIFC+QETK E Q + + +P+Y YW
Sbjct: 1 MKLVSWNVNGLRACVNKGFSEYFAQTDADIFCVQETKLQEGQ----IALDYPDYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TKVKP V YGL +E GR + + PNA L LD
Sbjct: 57 AEKKGYSGTAVFTKVKPLSVRYGLEEDSEPEGRIITLEFDGFYLVTVYTPNAKRDLSRLD 116
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW+ F ++ LDA KPVIL GDLNV+H+ IDL N N ++GFT EER + L
Sbjct: 117 YRLEWEDRFRRYIAGLDAVKPVILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDL 176
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH YP++T AYT+WS M K R RN G +YF
Sbjct: 177 LGAGFIDTFRHFYPEQTDAYTWWSNMPKV-RERNVGWRIDYF 217
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 133/222 (59%), Gaps = 6/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K +Y + DADIFC+QETK E Q + + +P+Y YW
Sbjct: 1 MKLVSWNVNGLRACVNKGFSEYFAQTDADIFCVQETKLQEGQ----IALDYPDYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TKVKP V YGL +E GR + + PNA L LD
Sbjct: 57 AEKKGYSGTAVFTKVKPLSVRYGLEEDSEPEGRIITLEFDGFYLVTVYTPNAKRDLSRLD 116
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW+ F ++ LDA KPVIL GDLNV+H+ IDL N N ++GFT EER + L
Sbjct: 117 YRLEWEDRFRRYIAGLDAVKPVILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDL 176
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH YP++T AYT+WS M K R RN G +YF
Sbjct: 177 LGAGFIDTFRHFYPEQTDAYTWWSNMPKV-RERNVGWRIDYF 217
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RAC+KK ++Y + +DADIFCLQETKC Q V++ Y YW
Sbjct: 1 MKLISWNVNGIRACLKKGFMEYFEAQDADIFCLQETKCSAGQ----VELDLKGYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P V+YGLG + ++ GR + + + PN+ L+ L
Sbjct: 57 AVKKGYSGTAIFTKKEPISVSYGLGIEEHDQEGRVITLEFEDFYMVTVYTPNSKNELERL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L KL+ KPV++ GD+NV+H+ IDL NP TN R+AGFT EER F+
Sbjct: 117 DYRMIWEDEFRSYLAKLNEAKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERTKFTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTDSFR+LYP R AY++WSY + AR NTG +YF
Sbjct: 177 LLKAGFTDSFRYLYPDRLHAYSWWSYRA-NARKNNTGWRIDYF 218
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRAC +K + DAD FCLQETK E QL ++F Y++YW +
Sbjct: 2 KFISWNVNGLRACCEKGFKESFAALDADFFCLQETKMQEGQL----DLEFEGYRSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++++ P VTYGLG + ++ GR + + F + PN+ GLK LD
Sbjct: 58 EKKGYSGTAIFSRHAPLNVTYGLGLEEHDKEGRVITLEMPDFFLVTVYTPNSQDGLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F +L++LD KPVI+ GDLNV+H+ IDL NP +N ++AGFT EER+ F L
Sbjct: 118 YRMQWEEAFRAYLLQLDTRKPVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGIL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR YP R G Y++WSY K AR +N G +YF
Sbjct: 178 LDSGFTDTFRFFYPDREGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|426232864|ref|XP_004010439.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Ovis aries]
Length = 318
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 145/230 (63%), Gaps = 5/230 (2%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD+IK+E DI CLQETKC E +LP E++
Sbjct: 57 GKSATLKICSWNVDGLRAWIKKKGLDWIKEEAPDILCLQETKCSENKLPVELQELSGLPH 116
Query: 128 TYWLS-SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAG 185
YW + S K GY+GVGL ++ P KV+YG+G + ++ GR + + VPNAG
Sbjct: 117 QYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAG 176
Query: 186 AGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +E
Sbjct: 177 RGLVRLEYRQCWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RDSFSSLLDKG-FTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R F LL TDSFRHLYP R AYT+W+YM ARS+N G +YF
Sbjct: 237 RQGFGELLQAAPLTDSFRHLYPNRAYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|344305891|ref|XP_003421623.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Loxodonta africana]
Length = 318
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 144/230 (62%), Gaps = 5/230 (2%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 57 GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSEKKLPAELQDLPGLSH 116
Query: 128 TYWLS-SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAG 185
YWL+ S K GY+GVGL ++ P KV+YG+G + ++ GR + + VPNAG
Sbjct: 117 QYWLAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTVYVPNAG 176
Query: 186 AGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL LD R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +E
Sbjct: 177 RGLVRLDYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 237 RQGFGELLQAVPLADSFRHLYPDTAYAYTFWTYMM-NARSKNVGWRLDYF 285
>gi|374997767|ref|YP_004973266.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357216133|gb|AET70751.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 250
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVK LD+ KE+AD+FC+QETK E Q+P + Y +YW +
Sbjct: 2 KLISWNVNGLRACVKNGFLDFFTKENADVFCIQETKIQEEQIP----FQLDGYYSYWNFA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K +P V+YG+G + ++ GR F + PN+ GL LD
Sbjct: 58 QKKGYSGTAIFSKTEPINVSYGIGMEEHDQEGRVITLEYEPFFLVTVYTPNSQRGLARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L L+ KP+I GDLNV+H+ IDL NP TN ++AGFT EERD FS +
Sbjct: 118 YRMKWEDDFLAYLKTLEKSKPIIFCGDLNVAHQEIDLKNPKTNKKNAGFTSEERDKFSQV 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR YP++ AYT+WSYM AR+ N G +YF
Sbjct: 178 LNHGFIDSFRFFYPEQRDAYTWWSYMF-NARANNAGWRIDYF 218
>gi|416999368|ref|ZP_11939959.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333976808|gb|EGL77670.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 251
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA V K ++ + DADIFCLQETK P ++ ++ P Y+ YW S
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFNELDADIFCLQETKLQ----PDQISLELPGYEQYWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T++KP VT G+G + ++ GR + N + + PN+ L L
Sbjct: 57 AVKKGYSGTAVFTRIKPLSVTNGIGIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L++LD +KPVIL GDLNV+H+ IDL NP TN ++AGF+ EER +
Sbjct: 117 DYRMNWEDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FRHLYP Y++WSYM K AR RNTG +YF
Sbjct: 177 LLGAGFTDTFRHLYPDAIEQYSWWSYMGK-ARERNTGWRIDYF 218
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA V K ++ + DADIFCLQETK P ++ ++ P Y+ YW S
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFNELDADIFCLQETKLQ----PDQISLELPGYEQYWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T++KP VT G+G + ++ GR + N + + PN+ L L
Sbjct: 57 AVKKGYSGTAVFTRIKPLSVTNGIGIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L++LD +KPVIL GDLNV+H+ IDL NP TN ++AGF+ EER +
Sbjct: 117 DYRMTWEDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FRHLYP Y++WSYM K AR RNTG +YF
Sbjct: 177 LLGAGFTDTFRHLYPDAIEQYSWWSYMGK-ARERNTGWRIDYF 218
>gi|452857678|ref|YP_007499361.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081938|emb|CCP23712.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 252
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 145/219 (66%), Gaps = 9/219 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA +KK ++ Y+++ +ADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETEADILCLQETKVQDGQVSLQ-----PEGYHAYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K KP V YGLG + + GR N F + PNA GL+
Sbjct: 56 NYAVKKGYSGTAVFSKEKPLHVFYGLGIDDHDQEGRVITLEFENVFVVNCYTPNAKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D RL+W+ F ++L KLD +KPVIL GDLNV+H+ IDL NP N ++AGF+ +ER++F
Sbjct: 116 RIDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
S+LL+ GFTDSFR+LYP R GAY++WSY + AR +N G
Sbjct: 176 SALLNAGFTDSFRYLYPDREGAYSWWSYRT-NAREKNIG 213
>gi|395502890|ref|XP_003755806.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Sarcophilus harrisii]
Length = 321
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 148/231 (64%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E++LP E++ P
Sbjct: 60 GKPSTLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSESKLPSELQ-DLPGLT 118
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ SSP K GY+GVGL ++ P VT+G+G + ++ GR + + VPNA
Sbjct: 119 YQYWSSPTDKEGYSGVGLLSRQCPLNVTFGIGEEEHDQEGRVIVAEFEAFVLVTAYVPNA 178
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L+A+KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 179 GRGLVRLEYRQRWDEAFRKFLKGLNAKKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 238
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL TDSFRHLYP+ AYT+W+YM AR++N G +YF
Sbjct: 239 ERQGFGELLQAVPLTDSFRHLYPEAAYAYTFWTYM-MNARAKNVGWRLDYF 288
>gi|282877708|ref|ZP_06286523.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
gi|281300280|gb|EFA92634.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
Length = 249
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 143/222 (64%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACVKK+ DAD FCLQETK QL ++F Y++YW +
Sbjct: 2 KFISWNVNGLRACVKKDFEASFHHLDADFFCLQETKMQAGQL----DLQFEGYQSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YTK P VTYGLG +++H GR + + F I VPN+ L+ LD
Sbjct: 58 DKKGYSGTAIYTKHTPLNVTYGLGIDEHDHEGRVITMEMDDFFLITVYVPNSQDELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F ++++LDA KPVI+ GDLNV+H+ IDL NP TN R+AGFT EER+ + L
Sbjct: 118 YRMQWEDDFRAYVMQLDAIKPVIICGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTIL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRHLYP++ Y++WSY + AR +N G +YF
Sbjct: 178 LNNGFVDTFRHLYPEQV-TYSWWSYRFR-AREKNAGWRIDYF 217
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K + DADIFC+QETK H P + ++ Y+ YW S+
Sbjct: 2 KLISWNVNGLRACLSKGFEGFFNTADADIFCIQETKMH----PDQAEIGLIGYEKYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T++ P V YGL + ++ GR N F + PN+ L LD
Sbjct: 58 VKKGYSGTAVFTRITPLSVIYGLNIEEHDQEGRLITLEFENFFLVNVYTPNSKRELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L+ L+ KPVI+ GD+NV+H+ ID+ NP TN R+AGFT EERD ++L
Sbjct: 118 YRMRWEDEFRTYLITLNQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKMTAL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD+FRH+YP + AYT+WSYM AR+RN G +YF
Sbjct: 178 LEAGFTDTFRHIYPDKIDAYTWWSYMMN-ARARNIGWRIDYF 218
>gi|395502892|ref|XP_003755807.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Sarcophilus harrisii]
Length = 320
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 148/231 (64%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E++LP E++ P
Sbjct: 59 GKPSTLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSESKLPSELQ-DLPGLT 117
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ SSP K GY+GVGL ++ P VT+G+G + ++ GR + + VPNA
Sbjct: 118 YQYWSSPTDKEGYSGVGLLSRQCPLNVTFGIGEEEHDQEGRVIVAEFEAFVLVTAYVPNA 177
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L+A+KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 178 GRGLVRLEYRQRWDEAFRKFLKGLNAKKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 237
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL TDSFRHLYP+ AYT+W+YM AR++N G +YF
Sbjct: 238 ERQGFGELLQAVPLTDSFRHLYPEAAYAYTFWTYM-MNARAKNVGWRLDYF 287
>gi|331002672|ref|ZP_08326187.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
gi|330407085|gb|EGG86589.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
Length = 262
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA V K LD+ + DADIFC+QE+K E Q +++ P Y YW +
Sbjct: 13 KMISWNVNGLRAAVTKGFLDFFRDIDADIFCIQESKLSEGQ----IELDLPGYYDYWNYA 68
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++TK KP VTYG+G + +++ GR + + + I PN+ GL LD
Sbjct: 69 AKKGYSGVAVFTKDKPIGVTYGIGIEEHDNEGRVITAEYDDFYLITCYTPNSQRGLTRLD 128
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++++KL+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER +
Sbjct: 129 YRMAWEDAFLDYVLKLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKMDIV 188
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR LYP + GAY++WSYM AR++N G +YF
Sbjct: 189 LSSGFADSFRVLYPDKEGAYSWWSYMG-GARAKNVGWRIDYF 229
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 141/226 (62%), Gaps = 7/226 (3%)
Query: 70 EPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTY 129
E K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q FP Y+ Y
Sbjct: 2 ETIMKLISWNVNGLRACMNKGFMDFFNTIDADVFCIQESKMQKEQ----ATFDFPNYEEY 57
Query: 130 WLSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
W S+ K GY+GV +++K KP V Y +G + ++ GR + + F + PN+ L
Sbjct: 58 WNSAEKKGYSGVAIFSKKKPLSVAYDMGISHHDKEGRIITAEYNDFFLVNVYTPNSKREL 117
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
+ L+ R+EW+ F L L+ KPVI+ GDLNV+HK IDL NP TN R+AGFT EER+
Sbjct: 118 ERLEYRMEWEDDFRNFLKNLEVTKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEEREK 177
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
S LLD GFTD+FR+ +P GAY++WSYM K AR NTG +YF
Sbjct: 178 MSVLLDSGFTDTFRYFHPTLEGAYSWWSYMGK-ARENNTGWRIDYF 222
>gi|6753086|ref|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus musculus]
gi|113985|sp|P28352.2|APEX1_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|220337|dbj|BAA14382.1| APEX nuclease precursor [Mus musculus]
gi|533108|gb|AAC13769.1| apurinic/apyrimidinic endonuclease [Mus musculus]
gi|533329|dbj|BAA07270.1| APEX nuclease [Mus musculus]
gi|12850573|dbj|BAB28774.1| unnamed protein product [Mus musculus]
gi|30851442|gb|AAH52401.1| Apurinic/apyrimidinic endonuclease 1 [Mus musculus]
gi|148688888|gb|EDL20835.1| apurinic/apyrimidinic endonuclease 1 [Mus musculus]
Length = 317
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/295 (43%), Positives = 171/295 (57%), Gaps = 21/295 (7%)
Query: 4 KKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNK 63
KKAAA D EE S+ E + S KKT+ E GP+ + D K
Sbjct: 6 KKAAAD--DGEEPKSE---PETKKSKGAAKKTEK---EAAGEGPVLYE------DPPDQK 51
Query: 64 KNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKF 123
+ G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ +
Sbjct: 52 TSPSGKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-EL 110
Query: 124 PEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKN 180
P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + +
Sbjct: 111 PGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFESFVLVTAY 170
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 171 VPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 230
Query: 241 FTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 231 FTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 284
>gi|346986376|ref|NP_001231340.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
gi|4106095|gb|AAD02702.1| apurinic/apyrimidinic endonuclease [Cricetulus griseus]
gi|344257035|gb|EGW13139.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
Length = 317
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 163/274 (59%), Gaps = 15/274 (5%)
Query: 28 SDANTKKTKSGSVENK----ATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGL 83
S+ TKK+K + +N+ GP + D NK + G+ KI SWNV GL
Sbjct: 18 SEPETKKSKGAAKKNEKEAAGEGPFLYE------DAPDNKTSPGGKLATLKICSWNVDGL 71
Query: 84 RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS-SPKAGYAGVG 142
RA +KK+GLD++K+E DI CLQETKC E +LP E++ YW + S K GY+GVG
Sbjct: 72 RAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQDLPGLTHQYWSAPSDKEGYSGVG 131
Query: 143 LYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLF 201
L ++ P KV+YG+G + ++ GR + + + VPNAG GL L+ R WDK F
Sbjct: 132 LLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDKAF 191
Query: 202 HEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDS 260
+ L L + KP++L GDLNV+H+ IDL NP N ++AGFT +ER F LL TDS
Sbjct: 192 CKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTDS 251
Query: 261 FRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FRHLYP AYT+W+YM AR++N G +YF
Sbjct: 252 FRHLYPNTPYAYTFWTYMM-NARAKNVGWRLDYF 284
>gi|325854960|ref|ZP_08171676.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
gi|325483938|gb|EGC86878.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
Length = 249
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 145/223 (65%), Gaps = 8/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K+ K +AD FCLQETK QL + FP Y +YW
Sbjct: 1 MKLISWNVNGLRACVGKDFEQQFKALNADFFCLQETKMQAGQL----DISFPGYASYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK KP VTYG+G +++H GR + + + + PN+ GL+ L
Sbjct: 57 ADKKGYSGTAIFTKHKPLDVTYGIGMDEHDHEGRVITLEMDDFYLVTVYTPNSQDGLRRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+K F ++L +LD +KPV++ GD+NV+H+ ID+ NP TN R+AGFT EER+ +
Sbjct: 117 DYRMKWEKDFQDYLHRLDRKKPVVVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKMTQ 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF D+FR LYP++ Y++WSY + AR RNTG +YF
Sbjct: 177 LLDSGFIDTFRTLYPEQV-TYSWWSYRFR-ARERNTGWRIDYF 217
>gi|13162337|ref|NP_077062.1| DNA-(apurinic or apyrimidinic site) lyase [Rattus norvegicus]
gi|1168468|sp|P43138.2|APEX1_RAT RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|11878235|gb|AAG40859.1|AF309114_1 nuclease APEX [Rattus norvegicus]
gi|624915|dbj|BAA07938.1| APEX nuclease [Rattus norvegicus]
gi|5360709|dbj|BAA82124.1| Apex nuclease [Rattus norvegicus]
gi|50926078|gb|AAH78816.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Rattus
norvegicus]
gi|149033628|gb|EDL88426.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_a [Rattus
norvegicus]
Length = 317
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 171/295 (57%), Gaps = 21/295 (7%)
Query: 4 KKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNK 63
K+AAA+ D EE S+ + + + T+K +G P ++K S +
Sbjct: 6 KRAAAE--DGEEPKSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSAS-------- 55
Query: 64 KNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKF 123
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ +
Sbjct: 56 ----GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-EL 110
Query: 124 PEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKN 180
P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + +
Sbjct: 111 PGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFESFILVTAY 170
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 171 VPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 230
Query: 241 FTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT +ER F +L DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 231 FTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 284
>gi|325269387|ref|ZP_08136004.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
gi|324988308|gb|EGC20274.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
Length = 249
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 143/222 (64%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K+ K DAD FCLQETK QL + FP Y +YW +
Sbjct: 2 KLISWNVNGLRACVGKDFEQQFKALDADFFCLQETKMQAGQL----DISFPGYTSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VTYG+G +++H GR + + + + PN+ GL+ LD
Sbjct: 58 DKKGYSGTAIFTKHKPLDVTYGIGMDEHDHEGRVITLEMDDFYLVTVYTPNSQDGLRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+K F +L LD +KPV++ GD+NV+H+ ID+ NP TN R+AGFT EER+ + L
Sbjct: 118 YRMKWEKDFQNYLHWLDEKKPVVVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR LYP++ Y++WSY + AR RNTG +YF
Sbjct: 178 LDSGFIDTFRSLYPEQV-TYSWWSYRFR-ARERNTGWRIDYF 217
>gi|410961722|ref|XP_003987428.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Felis catus]
gi|410961726|ref|XP_003987430.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 3
[Felis catus]
gi|410961728|ref|XP_003987431.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 4
[Felis catus]
gi|410961730|ref|XP_003987432.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 5
[Felis catus]
Length = 318
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 147/231 (63%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL+ DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLEAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 285
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+R+CV K L+Y K+ DADIFC+QE+K E Q+ E++ Y YW +
Sbjct: 2 KLISWNVNGIRSCVTKGFLEYFKEMDADIFCIQESKLQEGQIDLELE----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V+YGLG + ++ GR N + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKEKPLSVSYGLGIEEHDKEGRVITLEFENFYMVTVYTPNSKNELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L LD +KPVI+ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDAFRDYLKVLDEKKPVIVCGDLNVAHKEIDLKNPKTNLRNAGFTEEERSKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP GAY++WSY AR++N G +YF
Sbjct: 178 LNAGFVDTFRYFYPDEVGAYSWWSYRF-NARAKNAGWRIDYF 218
>gi|444522078|gb|ELV13303.1| DNA-(apurinic or apyrimidinic site) lyase [Tupaia chinensis]
Length = 318
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 148/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 51 QKTSSSGKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 109
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + +
Sbjct: 110 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDKFVLVT 169
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 170 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 229
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL TDSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 230 AGFTPQERQGFGELLQAVPLTDSFRHLYPDTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|451344782|ref|YP_007443413.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449848540|gb|AGF25532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 252
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 142/218 (65%), Gaps = 7/218 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRA +KK ++ Y+++ ADI CLQETK + Q V ++ Y YW
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETKADILCLQETKVQDGQ----VSLQLEGYHDYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G +++K KP V YGLG + + GR N F + PNA GL+
Sbjct: 57 YAVKKGYSGTAVFSKEKPLHVFYGLGIDDHDQEGRVITLEFENLFVVNCYTPNAKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
+D RL+W+ F E+L KLD +KPVIL GDLNV+H+ IDL NP N ++AGF+ +ER++FS
Sbjct: 117 IDYRLQWEADFKEYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSDQEREAFS 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+LL+ GFTDSFR+LYP R G Y++WSY + AR +N G
Sbjct: 177 ALLNTGFTDSFRYLYPDREGGYSWWSYRT-NAREKNIG 213
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRAC+ K L+Y K DADIF +QETK E Q V+++ Y+ YW +
Sbjct: 2 KAVSWNVNGLRACLGKGFLEYFKDVDADIFAIQETKLQEGQ----VELELEGYEQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK+ P V YG+ + ++ GR N +++ VPN+ GL LD
Sbjct: 58 VKKGYSGTAVFTKISPLSVAYGIDIEEHDAEGRVITLEFENFYFVNVYVPNSQRGLTRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F E+L+KLD KPVI GD NV+H+ IDL NP +N ++AGFT EER + L
Sbjct: 118 YRMKWEDDFREYLIKLDGIKPVICCGDKNVAHQEIDLKNPKSNRKNAGFTDEERQKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+LYP + AYT+WSYM K AR +N G +YF
Sbjct: 178 LNSGFIDAFRYLYPDKKDAYTWWSYMFK-AREKNVGWRIDYF 218
>gi|288799645|ref|ZP_06405104.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
gi|288332893|gb|EFC71372.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
Length = 250
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 140/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K D K DAD FCLQETK QL ++F Y++YW +
Sbjct: 2 KFISWNVNGLRASVTKGFEDIFKTLDADFFCLQETKMQAGQL----DLQFEGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YTK P V YG+G +++H GR + + PN+ LK LD
Sbjct: 58 DKKGYSGTAIYTKHSPLSVQYGIGIDQHDHEGRVVTLEFEQFYLVTVYTPNSQDELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW++ F +LVKLDA KPV++ GD+NV+H+ IDL NP TN R+AGFT EER+ ++L
Sbjct: 118 YRMEWERDFQAYLVKLDASKPVVVCGDMNVAHQEIDLKNPKTNRRNAGFTDEEREKMTNL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+LYP+ Y++WSY K AR +NTG +YF
Sbjct: 178 LDNGFIDTFRYLYPEEV-TYSWWSYRFK-AREKNTGWRIDYF 217
>gi|410961724|ref|XP_003987429.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Felis catus]
Length = 404
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 175/300 (58%), Gaps = 18/300 (6%)
Query: 4 KKAAAKVVDKE-EKSSKKRKSEVEDSDANTKKTKSGSVENK----ATGPMNEKLSLNKID 58
++A A V+ K +K + E + KK+K G+ +N+ GP+ + D
Sbjct: 80 RRAFATVMPKRGKKGAVAEDGEEPKIEPEAKKSKVGAKKNEKEAAGEGPVLYE------D 133
Query: 59 YSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPE 118
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E
Sbjct: 134 PPDQKTSPSGKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAE 193
Query: 119 VKMKFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTF 175
++ + P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + +
Sbjct: 194 LQ-ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFV 252
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN 235
+ VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N
Sbjct: 253 LVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGN 312
Query: 236 TRSAGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++AGFT +ER F LL+ DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 313 KKNAGFTPQERQGFGELLEAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYF 371
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA V K ++ + DADIFCLQETK P ++ ++ P Y+ YW S
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFNELDADIFCLQETKLQ----PEQISLELPGYEQYWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T++KP VT G+G + ++ GR + N + + PN+ L L
Sbjct: 57 AVKKGYSGTAVFTRIKPLSVTNGIGIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W+ F +L++LD +KPVIL GDLNV+H+ IDL NP TN ++AGF+ EER +
Sbjct: 117 EYRMAWEDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FRHLYP Y++WSYM K AR RNTG +YF
Sbjct: 177 LLGAGFTDTFRHLYPDAIEQYSWWSYMGK-ARERNTGWRIDYF 218
>gi|291403439|ref|XP_002718079.1| PREDICTED: APEX nuclease 1 [Oryctolagus cuniculus]
Length = 318
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 148/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD+IK+E DI CLQETKC E +LP E++
Sbjct: 51 QKTSPSGKAATLKICSWNVDGLRAWIKKKGLDWIKEEAPDILCLQETKCSENKLPAELQ- 109
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + +
Sbjct: 110 ELPGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVT 169
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 170 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 229
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL TDSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 230 AGFTPQERQGFGELLQAVPLTDSFRHLYPDTAYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|401680683|ref|ZP_10812594.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
gi|400218294|gb|EJO49178.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
Length = 251
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 143/223 (64%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA V K +D + DADIFCLQETK P +++++ P Y+ +W S
Sbjct: 1 MKLISWNVNGLRAAVTKGFIDSFNELDADIFCLQETKLQ----PHQIELELPGYEQFWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T++KP VT G+G + ++ GR + N + + PN+ L L
Sbjct: 57 AVKKGYSGTAVFTRIKPIAVTNGIGIEEHDQEGRVITAEFDNFYLVCCYTPNSQRELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L++LD +KPVIL GDLNV+H IDL NP TN ++AGF+ EER ++
Sbjct: 117 DYRMAWEDAFRAYLLELDKKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTT 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTD+FR+LYP Y++WSYM K AR RN G +YF
Sbjct: 177 LLESGFTDTFRYLYPDAVDEYSWWSYMGK-ARDRNVGWRIDYF 218
>gi|394994125|ref|ZP_10386855.1| ExoA [Bacillus sp. 916]
gi|393805011|gb|EJD66400.1| ExoA [Bacillus sp. 916]
Length = 252
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 145/219 (66%), Gaps = 9/219 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA +KK ++ Y+++ +ADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLMSWNVNGLRAVMKKIDINTYVQETEADILCLQETKVQDGQVSLQ-----PEGYHAYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K KP V YGLG + + GR + F + PNA GL+
Sbjct: 56 NYAVKKGYSGTAVFSKEKPLHVLYGLGIDDHDQEGRVITLEFEHVFVVNCYTPNAKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D RL+W+ F ++L KLD +KPVIL GDLNV+H+ IDL NP N ++AGF+ +ER++F
Sbjct: 116 RIDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
S+LL+ GFTDSFR+LYP R GAY++WSY + AR +N G
Sbjct: 176 SALLNAGFTDSFRYLYPDREGAYSWWSYRT-NAREKNIG 213
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA V K ++ + DADIFCLQETK P ++ ++ P Y+ YW S
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFNELDADIFCLQETKLQ----PDQISLELPGYEQYWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T++KP VT G+G + ++ GR + N + + PN+ L L
Sbjct: 57 AVKKGYSGTAVFTRIKPLSVTNGIGIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W+ F +L++LD +KPVIL GDLNV+H+ IDL NP TN ++AGF+ EER +
Sbjct: 117 EYRMAWEDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FRHLYP Y++WSYM K AR RNTG +YF
Sbjct: 177 LLGAGFTDTFRHLYPDAIEEYSWWSYMGK-ARERNTGWRIDYF 218
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 141/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA V K ++ + DADIFCLQETK P ++ ++ P Y+ YW S
Sbjct: 1 MKLISWNVNGLRAAVTKGFMESFNELDADIFCLQETKLQ----PDQISLELPGYEQYWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T++KP VT G+G + ++ GR + N + + PN+ L L
Sbjct: 57 AVKKGYSGTAVFTRIKPLSVTNGIGIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L++LD +KPVIL GDLNV+H+ IDL NP N ++AGF+ EER +
Sbjct: 117 DYRMTWEDAFRNYLLELDKKKPVILCGDLNVAHQEIDLKNPKMNRKNAGFSDEERAKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FRHLYP Y++WSYM K AR RNTG +YF
Sbjct: 177 LLGAGFTDTFRHLYPDAIEQYSWWSYMGK-ARERNTGWRIDYF 218
>gi|385267001|ref|ZP_10045088.1| ExoA [Bacillus sp. 5B6]
gi|385151497|gb|EIF15434.1| ExoA [Bacillus sp. 5B6]
Length = 252
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 145/219 (66%), Gaps = 9/219 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA +KK ++ Y+++ +ADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETEADILCLQETKVQDGQVSLQ-----PEGYHAYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K KP V YGLG + + GR N F + PNA GL+
Sbjct: 56 NYAVKKGYSGTAVFSKEKPLHVFYGLGIDDHDQEGRVITLEFENVFVVNCYTPNAKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D RL+W+ F ++L KLD +KPVIL GDLNV+H+ IDL NP N ++AGF+ +ER++F
Sbjct: 116 RIDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
S+LL+ GFTD+FR+LYP R GAY++WSY + AR +N G
Sbjct: 176 SALLNAGFTDTFRYLYPDREGAYSWWSYRT-NAREKNIG 213
>gi|345018486|ref|YP_004820839.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033829|gb|AEM79555.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 144/224 (64%), Gaps = 8/224 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKC--HETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRAC++K +DY KK +ADIFC+QETK H+T L ++ Y +W
Sbjct: 2 KLVSWNVNGLRACLQKGFMDYFKKVNADIFCIQETKLQPHQTDLE---ELNLEGYYAFWN 58
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K Y+G ++TK KP V YG+G ++++ GR + + PN+ GL
Sbjct: 59 FAEKKAYSGTAVFTKYKPLSVNYGIGIPQHDNEGRVITLEYEKFYLVNTYTPNSQRGLTR 118
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L R+EW++ F +L+KLD+ KP+IL GDLNV+HK ID+ NP+ N R+AGFT EER+ +
Sbjct: 119 LSYRMEWEEDFRNYLLKLDSVKPIILCGDLNVAHKEIDIKNPSANRRNAGFTDEEREKMT 178
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GF D+FR+ YP + AYT+WSYM + AR +N G +YF
Sbjct: 179 MLLNSGFIDTFRYFYPHKKDAYTWWSYM-RNAREKNIGWRIDYF 221
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ + +AD+FC+QE+K Q FP Y+ YW S+
Sbjct: 2 KLISWNVNGLRACMNKGFMDFFETVNADVFCIQESKMQREQ----ATFDFPNYEEYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +++K KP V Y +G ++ GR + + + + PN+ L+ L
Sbjct: 58 EKKGYSGVAIFSKTKPLSVAYDMGIAHHDKEGRIICAEYKDFYLVNVYTPNSKRELERLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F +L L+ KPVI+ GDLNV+H+ IDL NP TN R+AGFT EER+ + L
Sbjct: 118 YRMEWEDDFRAYLKNLEKTKPVIVCGDLNVAHQEIDLKNPKTNRRNAGFTDEEREKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FRH YP GAY++WSYM K AR NTG +YF
Sbjct: 178 LDSGFTDTFRHFYPTLEGAYSWWSYMGK-ARENNTGWRIDYF 218
>gi|419842315|ref|ZP_14365665.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421501617|ref|ZP_15948576.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|386902224|gb|EIJ67066.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402265769|gb|EJU15229.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 250
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 143/223 (64%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RAC+KK ++Y + +DADIFCLQETKC Q V++ Y YW
Sbjct: 1 MKLISWNVNGIRACLKKGFMEYFQAQDADIFCLQETKCSAGQ----VELDLKGYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P V+YGLG + ++ GR + + + PN+ L+ L
Sbjct: 57 AEKKGYSGTAIFTKKEPLSVSYGLGIEEHDQEGRVICLEFEDFYMVTVYTPNSKNELERL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L KL+ +KPV++ GD+NV+H+ IDL NP TN R+AGFT EER+ F+
Sbjct: 117 DYRMIWEDEFRNYLSKLNEKKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERNKFTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTDSFR+LYP AY++WSY + AR NTG +YF
Sbjct: 177 LLQAGFTDSFRYLYPDTLHAYSWWSYRA-NARKNNTGWRIDYF 218
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 144/218 (66%), Gaps = 7/218 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRA +KK ++ Y+++ +ADI CLQETK + Q V ++ Y YW
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETEADILCLQETKVQDGQ----VSLQLEGYHAYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G +++K KP V YGLG + + GR + F + PNA GL+
Sbjct: 57 YAVKKGYSGTAVFSKEKPLHVFYGLGIDDHDQEGRVITLEFEHVFVVNCYTPNAKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
+D RL+W+ F ++L KLD +KPVIL GDLNV+H+ IDL NP N ++AGF+ +ER++FS
Sbjct: 117 IDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREAFS 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+LL+ GFTDSFR+LYP + GAY++WSY + AR +N G
Sbjct: 177 ALLNAGFTDSFRYLYPDQEGAYSWWSYRT-NAREKNIG 213
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 140/223 (62%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV+K LDY ++ DADIFC+QETK Q+ ++K Y YW
Sbjct: 1 MKLVSWNVNGLRACVRKGFLDYFQEVDADIFCVQETKLQSGQIELDLK----GYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P V YGLG +NE GR + + PN+ L L
Sbjct: 57 AEKKGYSGTAVFTKEEPLSVHYGLGDVENEPEGRIITLEFPKFYLVNVYTPNSQRDLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
RLEW+ +L+ LD +KPV+L GDLNV+H+ IDL NP +N ++GFT EER S
Sbjct: 117 PYRLEWEDRIRSYLIDLDKDKPVLLCGDLNVAHQEIDLRNPKSNQGNSGFTKEERAKMSE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GF D+FR+ YP++ GAYT+WSY++K AR RN G +YF
Sbjct: 177 LLNAGFIDTFRYFYPEKEGAYTWWSYINK-ARERNIGWRIDYF 218
>gi|154484298|ref|ZP_02026746.1| hypothetical protein EUBVEN_02011 [Eubacterium ventriosum ATCC
27560]
gi|149734775|gb|EDM50692.1| exodeoxyribonuclease III [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACV K +D+ + DADIFC+QE+K E QL E+ P Y YW +
Sbjct: 2 KLISWNVNGIRACVTKGFMDFFNEIDADIFCIQESKMQEGQLELEM----PGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YG+G + ++H GR + + + PN+ LK LD
Sbjct: 58 EKKGYSGTAIFTKKEPMDVKYGIGIEEHDHEGRVITLEFEDFYMVTCYTPNSQNELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KL+ KPV+L GDLNV+HK IDL NP TN ++AGFT EER+ + L
Sbjct: 118 YRMQWEDDFKAYLKKLEESKPVVLCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKMTKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP G Y++WSY K AR +N G +YF
Sbjct: 178 LDDGFIDTFRYFYPDLEGKYSWWSYRFK-AREKNAGWRIDYF 218
>gi|291543155|emb|CBL16265.1| exodeoxyribonuclease III [Ruminococcus bromii L2-63]
Length = 252
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K ++ K DADIFCLQETK E Q + + Y YW +
Sbjct: 3 KLISWNVNGLRACVTKGFENFFKDVDADIFCLQETKLQEGQ----IDLLLEGYHQYWCYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YG+G +++H GR + N F + PN+ + LK LD
Sbjct: 59 DKKGYSGTAMFTKEEPLNVCYGIGIDEHDHEGRVITAEFDNCFVVTCYTPNSQSELKRLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KL+ +KPVI+ GDLNV+HK IDL NP TN ++AGFT EER ++L
Sbjct: 119 YRMKWEDDFKAYLKKLEEKKPVIMCGDLNVAHKEIDLKNPKTNRKNAGFTDEERSKMTAL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D++R+ YP G Y++WSY K AR +N G +YF
Sbjct: 179 LDDGFIDTYRYFYPDTEGVYSWWSYRFK-AREKNAGWRIDYF 219
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 141/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRAC+ K L+ DADIF +QETK P + ++ P YK YW S
Sbjct: 1 MKLISWNVNGLRACLGKGFLESFAALDADIFSIQETKMQ----PGQAELDLPGYKQYWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T+++P VTYG+G++ ++ GR + + + VPNA L L
Sbjct: 57 AEKKGYSGTAVFTRLEPLNVTYGIGSEEHDREGRAITLEFEDFYLVNCYVPNAQRELTRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+EW+ +L++LD+ KPVI GDLNV+H+ IDL N +N +AGFT EER +
Sbjct: 117 DWRMEWEDALRAYLLELDSRKPVIYCGDLNVAHQEIDLKNAKSNRGNAGFTDEERAKMTQ 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GF DSFRHLYP +TGAY++WSYM AR +N G +YF
Sbjct: 177 LLEAGFVDSFRHLYPDKTGAYSWWSYMFH-AREKNAGWRIDYF 218
>gi|404483949|ref|ZP_11019164.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
gi|404342961|gb|EJZ69330.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
Length = 276
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA V K LD+ + DADIFC+QE+K E Q +++ P Y YW +
Sbjct: 27 KMISWNVNGLRAAVTKGFLDFFRDIDADIFCIQESKLSEGQ----IELDLPGYYDYWNYA 82
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++TK KP VTYG+G + +++ GR + + + I PN+ GL LD
Sbjct: 83 QKKGYSGVAVFTKDKPLNVTYGIGIEEHDNEGRVITAEYEDFYLITCYTPNSQRGLTRLD 142
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +++KL+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER +
Sbjct: 143 YRMTWEDAFLSYILKLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKMDVI 202
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR LYP +T AY++WSYM AR++N G +YF
Sbjct: 203 LTSGFCDSFRVLYPDKTDAYSWWSYMG-GARAKNVGWRIDYF 243
>gi|166030570|ref|ZP_02233399.1| hypothetical protein DORFOR_00233 [Dorea formicigenerans ATCC
27755]
gi|346308967|ref|ZP_08851071.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
gi|166029572|gb|EDR48329.1| exodeoxyribonuclease III [Dorea formicigenerans ATCC 27755]
gi|345901516|gb|EGX71315.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
Length = 250
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RAC K +D+ ++ DADIFC+QETK E QL ++ P Y YW +
Sbjct: 2 KFISWNVNGIRACAGKGFMDFFQETDADIFCIQETKMQEGQL----ELDTPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + ++I PN+ + L LD
Sbjct: 58 KKKGYSGTAIFTKQEPISVSYGLGIEEHDQEGRVITLEFEDFYFITVYTPNSQSELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F +L KL+ KPVI GDLNV+H IDL NP TN ++AGFT EER F+ L
Sbjct: 118 YRMKWEEDFLTYLKKLEETKPVIFCGDLNVAHTEIDLKNPKTNRKNAGFTDEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP++TG Y++WSY +AR++N G +YF
Sbjct: 178 LNAGFVDTFRYFYPEQTGIYSWWSYRF-SARAKNAGWRIDYF 218
>gi|223278400|ref|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|113912167|gb|AAI22611.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Bos taurus]
gi|296483354|tpg|DAA25469.1| TPA: DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|440900925|gb|ELR51950.1| DNA-(apurinic or apyrimidinic site) lyase [Bos grunniens mutus]
Length = 318
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 144/230 (62%), Gaps = 5/230 (2%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 57 GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPVELQELSGLSH 116
Query: 128 TYWLS-SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAG 185
YW + S K GY+GVGL ++ P KV+YG+G + ++ GR + + VPNAG
Sbjct: 117 QYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAG 176
Query: 186 AGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +E
Sbjct: 177 RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R F LL TDSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 237 RQGFGELLQAVPLTDSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|113983|sp|P23196.2|APEX1_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|118|emb|CAA40014.1| BAP 1 [Bos taurus]
Length = 318
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 144/230 (62%), Gaps = 5/230 (2%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 57 GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPVELQELSGLSH 116
Query: 128 TYWLS-SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAG 185
YW + S K GY+GVGL ++ P KV+YG+G + ++ GR + + VPNAG
Sbjct: 117 QYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAG 176
Query: 186 AGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +E
Sbjct: 177 RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R F LL TDSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 237 RQGFGELLQAVPLTDSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|304438523|ref|ZP_07398463.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368606|gb|EFM22291.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 250
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ K+ DAD FCLQETK E Q + P Y+ Y+ S+
Sbjct: 2 RFVSWNVNGLRAALKKGFMEAFKELDADAFCLQETKMQEGQ----AILDLPGYEQYFYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+VKP V YG+G +++H GR + + + PNA L+ LD
Sbjct: 58 EKKGYSGTAIFTRVKPLSVAYGIGIPEHDHEGRVITMEFNDVYLVTVYTPNAKRALERLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L+ L A+KPV++ GDLNV+H IDL NP +N R+AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR LYP TGAYT+WSY+ + AR N G +YF
Sbjct: 178 LNAGFVDTFRALYPDLTGAYTWWSYL-RHARETNAGWRIDYF 218
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
++ +WNV GLRAC+ K LD+ ++ DAD+ CLQETK P ++ ++ P Y+ +W S
Sbjct: 1 MRLVTWNVNGLRACLGKGFLDFFQRVDADVVCLQETKLQ----PDQIALELPGYRLFWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T+V+P VT G+G ++H GR + F + PNA L +
Sbjct: 57 AEKKGYSGTAVFTRVEPLSVTCGIGLDAHDHEGRVITAEFDGFFLVCCYTPNAQNELARI 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F +L++LD +KPV+L GDLNV+H+ IDL NP +N SAGF+ +ER +
Sbjct: 117 DYRMQWEDDFRAYLMELDKKKPVVLCGDLNVAHEEIDLKNPKSNRGSAGFSDQERGKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FR LYP RTGAYT+WSY AR N G +YF
Sbjct: 177 LLSSGFTDTFRALYPDRTGAYTWWSY-RFNARKNNAGWRIDYF 218
>gi|149692696|ref|XP_001505181.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Equus
caballus]
Length = 318
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 161/285 (56%), Gaps = 26/285 (9%)
Query: 33 KKTKSGSVENKATGPMNE-KLSLNKIDYSCNKKNKLGEEP------------------NF 73
K+ K G+V GP E + +K N+K GE P
Sbjct: 3 KRGKKGAVAEDGEGPKTEPEAKKSKTGTKKNEKEAAGEGPVLYEDPPDQKTSPSGKSATL 62
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P + S+
Sbjct: 63 KICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSHQYWSA 121
Query: 134 P--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
P K GY+GVGL ++ P KV+YG+G + ++ GR + + VPNAG GL
Sbjct: 122 PSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAGRGLVR 181
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +ER F
Sbjct: 182 LEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFG 241
Query: 251 SLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 242 ELLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 285
>gi|162329924|pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape
Length = 285
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 149/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KIASWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 18 QKTSPSGKPATLKIASWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 76
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G +++ GR + + +
Sbjct: 77 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVT 136
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 137 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 196
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 197 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 252
>gi|374583527|ref|ZP_09656621.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
gi|374419609|gb|EHQ92044.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
Length = 262
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 140/223 (62%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACVK +D+ KEDADIFCLQETK + Q+P Y YW +
Sbjct: 2 KLISWNVNGIRACVKNGFMDFFLKEDADIFCLQETKIQKEQIP----FTLDGYYQYWNFA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G +++K++P + YG+G K EH GR + + PN+ GL L
Sbjct: 58 QKKGYSGTAIFSKIEPLNIVYGMG-KEEHDKEGRLITLEFEKFYVVTVYAPNSQRGLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F +++ L+ KPVI+ GDLNV+HK +DL NP+TN ++AGFT EER F
Sbjct: 117 DYRMKWEDDFLNYIIGLEKCKPVIVCGDLNVAHKEMDLKNPSTNKKNAGFTPEERSKFDE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+++KGF D+FR YP +T AYT+WSYM AR+ N G +YF
Sbjct: 177 VINKGFVDTFRFFYPDKTQAYTWWSYMF-NARANNAGWRIDYF 218
>gi|402312986|ref|ZP_10831909.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
gi|400367562|gb|EJP20578.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
Length = 258
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA V K LD+ + DADIFC+QE+K E Q +++ P Y YW +
Sbjct: 9 KMISWNVNGLRAAVTKGFLDFFRDIDADIFCIQESKLSEGQ----IELDLPGYYDYWNYA 64
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++TK KP VTYG+G + +++ GR + + + I PN+ GL LD
Sbjct: 65 QKKGYSGVAVFTKDKPLNVTYGIGIEEHDNEGRVITAEYEDFYLITCYTPNSQRGLTRLD 124
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +++KL+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER +
Sbjct: 125 YRMTWEDAFLSYILKLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKMDVI 184
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR LYP +T AY++WSYM AR++N G +YF
Sbjct: 185 LTSGFCDSFRVLYPDKTDAYSWWSYMG-GARAKNVGWRIDYF 225
>gi|419718967|ref|ZP_14246261.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
gi|383304836|gb|EIC96227.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
Length = 252
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA V K LD+ + DADIFC+QE+K E Q +++ P Y YW +
Sbjct: 3 KMISWNVNGLRAAVTKGFLDFFRDIDADIFCIQESKLSEGQ----IELDLPGYYDYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++TK KP VTYG+G ++++ GR + + I PN+ GL LD
Sbjct: 59 TKKGYSGVAVFTKDKPINVTYGIGIDEHDNEGRVITAEYDEFYLITCYTPNSQRGLTRLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++++KL+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER +
Sbjct: 119 YRMTWEDAFLDYVLKLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKMDII 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR LYP +T AY++WSYM AR++N G +YF
Sbjct: 179 LSSGFVDSFRVLYPDKTDAYSWWSYMG-GARAKNVGWRIDYF 219
>gi|429759794|ref|ZP_19292289.1| exodeoxyribonuclease III [Veillonella atypica KON]
gi|429179014|gb|EKY20276.1| exodeoxyribonuclease III [Veillonella atypica KON]
Length = 251
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA V K +D + DADIFCLQETK P +++++ P Y+ +W S
Sbjct: 1 MKVISWNVNGLRAAVTKGFIDSFNELDADIFCLQETKLQ----PHQIELELPGYEQFWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T++KP VT G+G + ++ GR + N + + PN+ L L
Sbjct: 57 AVKKGYSGTAVFTRIKPIAVTNGIGIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L++LD +KPVIL GDLNV+H IDL NP TN ++AGF+ EER +
Sbjct: 117 DYRMTWEDAFRAYLLELDKKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTD+FR+LYP Y++WSYM K AR RN G +YF
Sbjct: 177 LLESGFTDTFRYLYPDAVDEYSWWSYMGK-ARDRNVGWRIDYF 218
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 143/223 (64%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RACVKK LD+ +E+ADIFC+QE+K E Q +++ Y YW
Sbjct: 1 MKLVSWNVNGIRACVKKGFLDFFMEENADIFCIQESKLQEGQ----IELNLDGYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK KP V+YG+ G + E GR+ N + + PN+ L L
Sbjct: 57 AEKKGYSGTAVFTKEKPLYVSYGIAGRETEPEGRSLTLEFENFYLLNVYTPNSKRDLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
RLEW+ E++++L+ +KPVIL GDLNV+H IDL N +N ++GFT EER +S
Sbjct: 117 PYRLEWEDEIREYILELEQKKPVILCGDLNVAHLDIDLKNARSNRGNSGFTDEERGKMTS 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL +GF DSFR+LYP++ GAYT+WSYM+K R RN G +YF
Sbjct: 177 LLSEGFVDSFRYLYPEQEGAYTWWSYMAKV-RERNIGWRIDYF 218
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402778258|ref|YP_006632202.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|452912770|ref|ZP_21961398.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
gi|585113|sp|P37454.1|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|402483437|gb|AFQ59946.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|407962942|dbj|BAM56182.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7613]
gi|407966954|dbj|BAM60193.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7003]
gi|452117798|gb|EME08192.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
Length = 252
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 146/224 (65%), Gaps = 8/224 (3%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRA ++K + L Y+K+EDADI CLQETK + Q V ++ +Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQ----VDLQPEDYHVYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G +++K +P +V YG+G + ++ GR N F + PN+ GL+
Sbjct: 57 YAVKKGYSGTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNSRRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
+D R++W++ ++++LD +KPVIL GDLNV+H+ IDL NP N +AGF+ +ER++F+
Sbjct: 117 IDYRMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFRH+YP GAY++WSY + AR RN G +YF
Sbjct: 177 RFLEAGFVDSFRHVYPDLEGAYSWWSYRA-GARDRNIGWRIDYF 219
>gi|327313318|ref|YP_004328755.1| exodeoxyribonuclease III [Prevotella denticola F0289]
gi|326944960|gb|AEA20845.1| exodeoxyribonuclease III [Prevotella denticola F0289]
Length = 249
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 142/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV KE K DAD FCLQETK QL + FP Y++YW +
Sbjct: 2 KFISWNVNGLRACVGKEFEQQFKDLDADFFCLQETKMQAGQL----DLSFPGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VTYG+G +++H GR + + + + PN+ GL+ LD
Sbjct: 58 DKKGYSGTAIFTKHKPLNVTYGIGIDEHDHEGRVITLEMDDFYLVTVYTPNSQDGLRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KLD +KPV++ GD+NV+H+ IDL NP TN ++AGFT EER+ + L
Sbjct: 118 YRMKWEDDFQAYLHKLDEKKPVVVCGDMNVAHQEIDLKNPKTNRKNAGFTDEEREKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP++ Y++WSY + AR RNTG +YF
Sbjct: 178 LGNGFIDTFRTLYPEQV-TYSWWSYRFR-ARERNTGWRIDYF 217
>gi|301788284|ref|XP_002929556.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Ailuropoda melanoleuca]
gi|301788286|ref|XP_002929557.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Ailuropoda melanoleuca]
gi|301788288|ref|XP_002929558.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 3
[Ailuropoda melanoleuca]
gi|281345899|gb|EFB21483.1| hypothetical protein PANDA_019762 [Ailuropoda melanoleuca]
Length = 318
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 143/230 (62%), Gaps = 5/230 (2%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 57 GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELSGLSH 116
Query: 128 TYWLS-SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAG 185
YW + S K GY+GVGL ++ P KV+YG+G + ++ GR + + VPNAG
Sbjct: 117 QYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNAG 176
Query: 186 AGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +E
Sbjct: 177 RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 236
Query: 246 RDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 237 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|340751024|ref|ZP_08687853.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K LDY K++ ADIFCLQETK E Q ++++ Y YW +
Sbjct: 2 KLISWNVNGLRACVGKGFLDYFKEQQADIFCLQETKLQEGQ----IELELDGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V YG+G + ++ GR + I PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKEKPISVHYGIGIEEHDKEGRVITLEFEKFYMITVYTPNSQEKLARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F +L++LD +KPVI+ GDLNV+HK IDL NP TN ++AGF+ EER+ + L
Sbjct: 118 YRMKWEEDFKNYLLELDKKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFSDEEREKMTKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+ YP +T Y++WSY +AR++N G +YF
Sbjct: 178 LESGFVDSFRYFYPNKTDIYSWWSYRF-SARAKNAGWRIDYF 218
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|384161680|ref|YP_005543753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|384166602|ref|YP_005547981.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|384170793|ref|YP_005552171.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|341830072|gb|AEK91323.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
Length = 252
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 144/219 (65%), Gaps = 9/219 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKED-ADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA +KK ++ +E ADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTCLQETKADILCLQETKVQDGQVSLQ-----PEGYHDYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++KVKP +V+YGLG + + GR N F + PNA GL+
Sbjct: 56 NYAVKKGYSGTAVFSKVKPLQVSYGLGIDDHDQEGRVITLEFENVFVVNCYTPNAKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D RL+W+ F ++L KLD +KPVIL GDLNV+H+ IDL NP N ++AGF+ +ER++F
Sbjct: 116 RIDYRLQWEADFKDYLQKLDQKKPVILCGDLNVAHREIDLKNPKANRKNAGFSDQEREAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
S LL+ GFTDSFR+LYP + GAY++WSY + AR +N G
Sbjct: 176 SVLLNAGFTDSFRYLYPDQEGAYSWWSYRT-NAREKNIG 213
>gi|402835045|ref|ZP_10883630.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
gi|402276400|gb|EJU25510.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
Length = 250
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 143/223 (64%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
+ SWNV GLRAC+ K + K DAD+F +QETK P + ++ YK YW S
Sbjct: 1 MRFVSWNVNGLRACLGKGFMQSFKALDADVFGVQETKMQ----PEQAILELTGYKQYWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++++++P V+YGLG + ++H GR + +++ PN+ GL+ L
Sbjct: 57 AEKKGYSGTAVFSRIEPLSVSYGLGIEEHDHEGRVIALEFDDLYFVTVYTPNSQRGLERL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R+ W++ F ++L+ LDA+KPV++ GDLNV+H IDL NP TN ++AGFT EER+ +
Sbjct: 117 AYRMTWEEAFRDYLLTLDAKKPVVVCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FR LYP +TG YT+WSY+ K AR N G +YF
Sbjct: 177 LLQAGFTDTFRALYPDKTGIYTWWSYLRK-ARETNAGWRIDYF 218
>gi|303229843|ref|ZP_07316620.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|303231217|ref|ZP_07317955.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514124|gb|EFL56128.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302515473|gb|EFL57438.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 251
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA V K +D + DADIFCLQETK P +++++ P Y+ +W S
Sbjct: 1 MKLISWNVNGLRAAVTKGFIDSFNELDADIFCLQETKLQ----PHQIELELPGYEQFWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T++KP VT G+G + ++ GR + N + + PN+ L L
Sbjct: 57 AVKKGYSGTAVFTRIKPIAVTNGIGIEEHDQEGRVITAEYDNFYLVCCYTPNSQRELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L++LD +KPVIL GDLNV+H IDL NP TN ++AGF+ EER +
Sbjct: 117 DYRMTWEDAFRAYLLELDKKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTD+FR+LYP Y++WSYM K AR RN G +YF
Sbjct: 177 LLESGFTDTFRYLYPDAVDEYSWWSYMGK-ARDRNVGWRIDYF 218
>gi|167771017|ref|ZP_02443070.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
gi|167666687|gb|EDS10817.1| exodeoxyribonuclease III [Anaerotruncus colihominis DSM 17241]
Length = 250
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 139/223 (62%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRAC+ K LD+ DAD CLQETK H+ Q ++ P Y+ +W S
Sbjct: 1 MKLVSWNVNGLRACLGKGFLDFFSAADADAVCLQETKMHQEQ----ADLELPGYQQFWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T+V P VTYG+G +++ GR + + PNA L L
Sbjct: 57 AEKKGYSGTAVFTRVPPLNVTYGIGMAEHDSEGRVITVEYEPFYLVNCYTPNAQRELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R++W+ F +L+ LDA+KPV+L GDLNV+H+ IDL NP TN R+AGF+ EER +
Sbjct: 117 EYRMKWEDDFRAYLMSLDAKKPVVLCGDLNVAHQEIDLKNPKTNRRNAGFSDEERAKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF D+FR LYP TGAYT+WSY+ + AR N G +YF
Sbjct: 177 LLAGGFVDTFRALYPDVTGAYTWWSYLRR-ARDTNAGWRIDYF 218
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| exodeoxyribonuclease III [Clostridium sp. L2-50]
Length = 262
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 143/231 (61%), Gaps = 7/231 (3%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
++ G K+ SWNV G+RACV K +D+ K+ DADIFC+QE+K E QL +++ P
Sbjct: 4 DQTGGSTTMKMISWNVNGIRACVGKNFMDFFKEADADIFCIQESKMQEGQL----QLELP 59
Query: 125 EYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPN 183
Y YW + K GY+G ++ K +P V YG+G + ++H GR N + + PN
Sbjct: 60 GYYQYWNYAEKKGYSGTAIFAKKEPLSVAYGIGIEEHDHEGRVITLEYDNFYMVTVYTPN 119
Query: 184 AGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTI 243
+ L LD R++W+ F E+L +L+ KPV++ GD+NV+H IDL NP TN ++AGFT
Sbjct: 120 SQNELARLDYRMKWEDDFREYLKQLEQTKPVVVCGDMNVAHTEIDLKNPKTNRKNAGFTD 179
Query: 244 EERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
EER+ FS+LLD GF D+FR P G Y++WSY K AR +N G +YF
Sbjct: 180 EEREKFSTLLDSGFVDTFRFFNPDAEGIYSWWSYRFK-AREKNAGWRIDYF 229
>gi|432112926|gb|ELK35512.1| DNA-(apurinic or apyrimidinic site) lyase [Myotis davidii]
Length = 320
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 59 GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 117
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + VPNA
Sbjct: 118 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNA 177
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 178 GRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 237
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 238 ERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 287
>gi|315652833|ref|ZP_07905807.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485035|gb|EFU75443.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 259
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA V K LD+ + DADIFC+QE+K E Q +++ P Y YW +
Sbjct: 10 KMISWNVNGLRAAVTKGFLDFFRDIDADIFCIQESKLSEGQ----IELDLPGYYDYWNYA 65
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++TK KP VTYG+G ++++ GR + + I PN+ GL LD
Sbjct: 66 TKKGYSGVAVFTKDKPINVTYGIGIDEHDNEGRVITAEYDEFYLITCYTPNSQRGLTRLD 125
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++ +KL+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER +
Sbjct: 126 YRMTWEDAFLDYALKLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKMDII 185
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR LYP +T AY++WSYM AR++N G +YF
Sbjct: 186 LSSGFVDSFRLLYPDKTDAYSWWSYMG-GARAKNVGWRIDYF 226
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWLS 132
K+ SWNV GLR+CV K LDY ++ DADI C+QETK E QL +++ PE Y+ YW
Sbjct: 2 KLISWNVNGLRSCVGKGFLDYFRRADADIVCVQETKLQEGQL----ELELPEGYRQYWNC 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++T+ +P V GL ++ GR F + PNA L L+
Sbjct: 58 AEKKGYSGTAVFTRFEPLSVRKGLSDGDDPEGRVLTLEFPAFFLVNVYTPNARRDLSRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W++ F +L +LDA KPV++ GDLNV+H+ IDL N N +AGFT EER++ + L
Sbjct: 118 YRIAWEERFRAYLKELDARKPVVVCGDLNVAHREIDLKNAKFNRGNAGFTDEEREAMTRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD+FRH YP RT AYT+WS+M K R RN G +YF
Sbjct: 178 LEAGFTDTFRHFYPDRTDAYTWWSFMPKV-RERNIGWRIDYF 218
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ K+ +AD+FCLQETK E Q + P Y+ Y+ S+
Sbjct: 2 RFVSWNVNGLRAALKKGFMESFKELNADVFCLQETKMQEGQ----AILDLPGYEQYFYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+VKP V+YG+G + +++ GR + + + + PNA L+ LD
Sbjct: 58 EKKGYSGTAIFTRVKPLSVSYGIGIEEHDNEGRVITMELPDVYLVTVYTPNAKRALERLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L+ L A+KPV++ GDLNV+H IDL NP +N R+AGFT EER F L
Sbjct: 118 YRMAWEDSFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP RTGAYT+WSY+ + AR N G +YF
Sbjct: 178 LAAGFVDTFRALYPDRTGAYTWWSYL-RHARETNAGWRIDYF 218
>gi|468371|gb|AAA21019.1| apurinic/apyrimidinic endonuclease [Rattus norvegicus]
Length = 316
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 167/296 (56%), Gaps = 19/296 (6%)
Query: 3 PKKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCN 62
PK+ D EE S+ + + + T+K +G P ++K S +
Sbjct: 2 PKRGKRAAEDGEEPKSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSAS------- 54
Query: 63 KKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK 122
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ +
Sbjct: 55 -----GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-E 108
Query: 123 FPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRK 179
P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + +
Sbjct: 109 LPGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFESFILVTA 168
Query: 180 NVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSA 239
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++A
Sbjct: 169 YVPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNA 228
Query: 240 GFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GFT +E F +L DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 229 GFTPQEAQGFGEMLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 283
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 131/222 (59%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K Y+K+ +ADIFC+QETK E Q+ E EY YW
Sbjct: 1 MKLISWNVNGLRACVTKGFYTYLKETNADIFCVQETKLQEGQILME---NMEEYTQYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TK+KP V YGL E GR N + + PN L L
Sbjct: 58 AEKKGYSGTAIFTKIKPLSVHYGLEENEEPEGRTITLEFENFYLVNVYTPNTKRDLSRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW+ F +L +LDA KPVI+ GDLNV+H+ IDL N N +AGFT EER+ S L
Sbjct: 118 YRLEWEDRFRSYLQQLDALKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSLL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR YP RT Y++WSYM K R RN G +YF
Sbjct: 178 LDAGFIDTFRTFYPDRTDVYSWWSYMPK-VRERNIGWRIDYF 218
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 141/222 (63%), Gaps = 4/222 (1%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRAC++K +DY KK +ADIFC+QETK Q E ++ Y +W +
Sbjct: 2 KFVSWNVNGLRACLQKGFMDYFKKVNADIFCIQETKLQPHQTGLE-ELNLEGYYAFWNFA 60
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K Y+G ++TK KP V YG+G ++++ GR + + PN+ GL L
Sbjct: 61 EKKAYSGTAVFTKYKPLSVNYGIGIPQHDNEGRVITLEYEKFYLVNTYTPNSQRGLTRLS 120
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW++ F +L+KLD+ KP+IL GDLNV+HK ID+ NP+ N R+AGFT EER+ + L
Sbjct: 121 YRMEWEEDFRNYLLKLDSVKPIILCGDLNVAHKEIDIKNPSANRRNAGFTDEEREKMTML 180
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR +N G +YF
Sbjct: 181 LNSGFIDTFRYFYPHKKDAYTWWSYM-RNAREKNIGWRIDYF 221
>gi|223278420|ref|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [Canis lupus familiaris]
Length = 318
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLP 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDTFVLVTAYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|357059246|ref|ZP_09120090.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
gi|355372575|gb|EHG19915.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
Length = 250
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ K+ DAD FCLQETK E Q + P Y+ Y+ S+
Sbjct: 2 RFVSWNVNGLRAALKKGFMESFKELDADAFCLQETKMQEGQ----AILDLPGYEQYFYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+++P V YG+GT +++H GR + + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTRIRPLSVNYGIGTPEHDHEGRVITMEFADVYLVTVYTPNSKNALARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L+ L A+KPV++ GDLNV+H IDL NP +N R+AGFT EER F+ L
Sbjct: 118 YRMVWEDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR LYP TGAYT+WSY+ + AR N G +YF
Sbjct: 178 LNAGFVDTFRALYPDVTGAYTWWSYL-RHARETNAGWRIDYF 218
>gi|410460164|ref|ZP_11313847.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
gi|409927394|gb|EKN64530.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
Length = 251
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 136/223 (60%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV+K LDY + ADIFC+QETK E Q + + Y YW
Sbjct: 1 MKLISWNVNGLRACVQKGFLDYFHEMGADIFCVQETKLQEGQ----IDLNLENYNQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNE-HYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK+KP V+YGLG E H GR + + + PN+ L L
Sbjct: 57 AAKKGYSGTAVFTKIKPISVSYGLGEHMEDHEGRAITLEFPSFYLVNVYTPNSQRDLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
RLEW+ +L++LD KPVIL GDLNV+H+ IDL N TN ++GFT EER+ +
Sbjct: 117 SYRLEWEDNIRNYLLELDKVKPVILCGDLNVAHQEIDLKNYKTNRGNSGFTDEEREKMTR 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF DSFR+LYP + Y++WSYM+K R RN G +YF
Sbjct: 177 LLDSGFVDSFRYLYPDKGDVYSWWSYMNK-VRERNIGWRIDYF 218
>gi|357041996|ref|ZP_09103703.1| exodeoxyribonuclease [Prevotella histicola F0411]
gi|355370010|gb|EHG17399.1| exodeoxyribonuclease [Prevotella histicola F0411]
Length = 249
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 145/222 (65%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K+ K DAD FC+QETK + QL + FP Y++YW +
Sbjct: 2 KLISWNVNGLRACVGKDFEQQFKDLDADFFCIQETKMQDGQL----DISFPGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V+YG+ + ++H GR + + F + PN+ GL+ L+
Sbjct: 58 EKKGYSGTAIFTKHKPLSVSYGIDIEEHDHEGRVITLEMDDFFLVTVYTPNSQDGLRRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KLDA+KPVI+ GD+NV+H+ ID+ NP TN R+AGFT EER+ + L
Sbjct: 118 YRMKWEDDFQAYLHKLDAKKPVIVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR LYP++ Y++WSY + AR RNTG +YF
Sbjct: 178 LNNGFIDTFRSLYPEQV-TYSWWSYRFR-ARERNTGWRIDYF 217
>gi|403289383|ref|XP_003935839.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
gi|403289385|ref|XP_003935840.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
Length = 318
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLP 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 285
>gi|296214367|ref|XP_002753758.1| PREDICTED: uncharacterized protein LOC100400557 isoform 1
[Callithrix jacchus]
gi|296214369|ref|XP_002753759.1| PREDICTED: uncharacterized protein LOC100400557 isoform 2
[Callithrix jacchus]
Length = 318
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLP 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|213021237|ref|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa]
gi|210062866|gb|ACJ06403.1| APEX nuclease 1 [Sus scrofa]
Length = 318
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 145/236 (61%), Gaps = 5/236 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 51 QKTSPSGKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQE 110
Query: 122 KFPEYKTYWLS-SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRK 179
YW + S K GY+GVGL ++ P KV+YG+G + ++ GR + +
Sbjct: 111 LSGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTA 170
Query: 180 NVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSA 239
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++A
Sbjct: 171 YVPNAGRGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNA 230
Query: 240 GFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 231 GFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|260887970|ref|ZP_05899233.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|330838548|ref|YP_004413128.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|260862221|gb|EEX76721.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|329746312|gb|AEB99668.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
Length = 250
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 143/223 (64%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
+ SWNV GLRAC+ K + K DAD+F +QETK P + ++ YK YW S
Sbjct: 1 MRFVSWNVNGLRACLGKGFMQSFKALDADVFGVQETKMQ----PEQAILELTGYKQYWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++++++P V+YGLG + ++H GR + +++ PN+ GL+ L
Sbjct: 57 AEKKGYSGTAVFSRIEPLSVSYGLGIEEHDHEGRVIALEFDDLYFVTVYTPNSQRGLERL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R+ W++ F ++L+ LDA+KPV++ GDLNV+H IDL NP TN ++AGFT EER+ +
Sbjct: 117 AYRMTWEEAFRDYLLALDAKKPVVVCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FR LYP +TG YT+WSY+ K AR N G +YF
Sbjct: 177 LLAAGFTDTFRALYPDKTGIYTWWSYLRK-ARETNAGWRIDYF 218
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV+K LD+ K+ DADIFC+QE+K E QL K++ Y +W +
Sbjct: 2 KFISWNVNGIRACVQKGFLDFFKEADADIFCIQESKMQEGQL----KLELEGYHQFWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P V YG+G + ++ GR +++ PN+ L LD
Sbjct: 58 ERKGYSGTAIFTKQEPLSVAYGIGMEEHDKEGRVITLEFEEFYFVTVYTPNSQNELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F ++L KL+A+KPVI GDLNV+H+ IDL NP TN ++AGFT EER F+ L
Sbjct: 118 YRMQWETEFLKYLKKLEAKKPVIFCGDLNVAHREIDLKNPKTNQKNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+ YP++ G Y++WSY +AR++N G +YF
Sbjct: 178 LSAGFIDTFRYFYPEQEGIYSWWSYRF-SARAKNAGWRIDYF 218
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 138/222 (62%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K +Y K+ +ADIFCLQETK E Q+ E+ Y YW
Sbjct: 1 MKLISWNVNGLRACVNKGFYEYFKEANADIFCLQETKLQEGQIEMEIG---EAYHQYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TK++P V YGL +E GR + + + PNA L LD
Sbjct: 58 AEKKGYSGTAVFTKMEPLSVRYGLEEDHEPEGRVITLEFQDFYLVTVYTPNAKRDLSRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW+ F +L++LD +KPV++ GDLNV+H+ IDL N +N ++GFT EER+ +SL
Sbjct: 118 YRLEWEDRFRNYLLQLDGKKPVVVCGDLNVAHQEIDLKNAKSNRGNSGFTPEEREKMTSL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D++R+ YP +T AYT+WS+M K R RN G +YF
Sbjct: 178 LAAGFVDTYRYFYPDQTDAYTWWSFMPKV-RERNIGWRIDYF 218
>gi|392395397|ref|YP_006431999.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526475|gb|AFM02206.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
Length = 250
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 139/223 (62%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ ++E ADIFCLQETK E Q+P +++ Y YW +
Sbjct: 2 KLISWNVNGLRACLNKGFMDFFEQEQADIFCLQETKLQEEQIPFQLE----GYYAYWNFA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G ++TK +P V+YG+G K EH GR + + PN+ GL L
Sbjct: 58 QKKGYSGTAVFTKNEPLSVSYGIG-KEEHDQEGRVITLEFETFYLVTVYAPNSQRGLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W++ F +L L+ KPVI GDLNV+H IDL NP +N ++AGF+ EER FS
Sbjct: 117 DYRMTWEEEFLSYLKSLEKSKPVIFCGDLNVAHTEIDLKNPKSNRKNAGFSDEERAKFSG 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF D+FRH YP +T +YT+WSYM AR+ N G +YF
Sbjct: 177 LLKNGFIDTFRHFYPDKTDSYTWWSYMF-NARTNNAGWRIDYF 218
>gi|374315128|ref|YP_005061556.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350772|gb|AEV28546.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 271
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 141/222 (63%), Gaps = 6/222 (2%)
Query: 67 LGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY 126
+GE P K+ SWNV GLRAC KK +Y+ + DADIFCLQETK E Q + + Y
Sbjct: 18 VGELP-VKLISWNVNGLRACQKKGFEEYLSRADADIFCLQETKLQEDQ----IALDKLSY 72
Query: 127 KTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGA 186
T+W + K GY+G L++K++P V+ +G + GR + + F I PN+
Sbjct: 73 HTFWSFAEKKGYSGTALFSKIQPISVSREIGHPLDSEGRTVTAEFEDYFVICCYTPNSQE 132
Query: 187 GLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEER 246
L ++ R++WD F +++ LD +KPV++ GDLNV+H PIDL NP N ++AG++I+ER
Sbjct: 133 KLARIELRMDWDAAFRKYVSDLDKKKPVLICGDLNVAHNPIDLKNPKQNEQNAGYSIQER 192
Query: 247 DSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
FS+LL GFTDSFR+LYP +T AY++WSY AR +N G
Sbjct: 193 QGFSTLLASGFTDSFRYLYPDKTDAYSWWSYRFH-AREKNIG 233
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 142/224 (63%), Gaps = 9/224 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
KI SWNV G+RACVKK +D+ K DADIFC+QE+K E Q +++ Y YW
Sbjct: 1 MKIVSWNVNGIRACVKKGFMDFFKDVDADIFCIQESKLQEGQ----IQLDLENYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNV--PNAGAGLKT 190
+ + GY+G ++TK +P V+YG+G ++ C + FY+ NV PN+ L
Sbjct: 57 AERKGYSGTAVFTKQEPLSVSYGIGEDDDEPEGRCITLEFEDFYLL-NVYTPNSKRDLSR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ RL W++ ++ +LD KPVI GDLNV+H IDL NP +N ++GFT EER+ S
Sbjct: 116 LEDRLHWEERVRAYIKELDEIKPVIYCGDLNVAHNEIDLRNPKSNHGNSGFTTEEREKMS 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL++GF DSFRHLYP++ +YT+WSYMSK R RN G +YF
Sbjct: 176 TLLNEGFVDSFRHLYPEKDQSYTWWSYMSK-VRERNIGWRIDYF 218
>gi|426376144|ref|XP_004054867.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376146|ref|XP_004054868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376148|ref|XP_004054869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376150|ref|XP_004054870.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
Length = 318
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNA
Sbjct: 116 YQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|18375501|ref|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375503|ref|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375505|ref|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|346644849|ref|NP_001231178.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|113984|sp|P27695.2|APEX1_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=APE-1; AltName: Full=REF-1;
AltName: Full=Redox factor-1; Contains: RecName:
Full=DNA-(apurinic or apyrimidinic site) lyase,
mitochondrial
gi|13399540|pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399541|pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399606|pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|354459810|pdb|3U8U|A Chain A, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459811|pdb|3U8U|B Chain B, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459812|pdb|3U8U|C Chain C, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459813|pdb|3U8U|D Chain D, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459814|pdb|3U8U|E Chain E, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459815|pdb|3U8U|F Chain F, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|19339022|gb|AAL86909.1|AF488551_1 APEX nuclease (multifunctional DNA repair enzyme) [Homo sapiens]
gi|32022|emb|CAA46925.1| AP endonuclease 1 [Homo sapiens]
gi|178747|gb|AAA58372.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|183780|gb|AAA58629.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|254069|gb|AAB22977.1| Ref-1 [Homo sapiens]
gi|13436404|gb|AAH04979.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|28071072|emb|CAD61917.1| unnamed protein product [Homo sapiens]
gi|54697126|gb|AAV38935.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|60655677|gb|AAX32402.1| APEX nuclease 1 [synthetic construct]
gi|61358645|gb|AAX41600.1| APEX nuclease 1 [synthetic construct]
gi|63100763|gb|AAH95428.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|119586867|gb|EAW66463.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586868|gb|EAW66464.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586869|gb|EAW66465.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586870|gb|EAW66466.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586871|gb|EAW66467.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586872|gb|EAW66468.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|158255636|dbj|BAF83789.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 148/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 51 QKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 109
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G +++ GR + + +
Sbjct: 110 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVT 169
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 170 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 229
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 230 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|219478|dbj|BAA14381.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
Length = 318
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 149/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
+K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 51 HKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 109
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G +++ GR + + +
Sbjct: 110 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVT 169
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 170 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 229
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 230 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
++ +WNV GLRAC+ K LD+ ++ DAD+ CLQETK P ++ ++ P Y+ +W S
Sbjct: 1 MRLVTWNVNGLRACLGKGFLDFFQRVDADVVCLQETKLQ----PDQIALELPGYRLFWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T+V+P VT G+G ++H GR + F + PNA L +
Sbjct: 57 AEKKGYSGTAVFTRVEPLSVTCGIGLDAHDHEGRVITAEFDGFFLVCCYTPNAQNELARI 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F +L++LD +KPV+L GDLNV+H+ IDL NP +N +AGF+ +ER +
Sbjct: 117 DYRMQWEDDFRAYLMELDKKKPVVLCGDLNVAHEEIDLKNPRSNRGNAGFSDQERGKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FR LYP RTGAYT+WSY AR N G +YF
Sbjct: 177 LLSSGFTDTFRALYPDRTGAYTWWSY-RFNARKNNAGWRIDYF 218
>gi|125490347|ref|NP_001074954.1| DNA-(apurinic or apyrimidinic site) lyase [Pan troglodytes]
gi|397481065|ref|XP_003811777.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481067|ref|XP_003811778.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481069|ref|XP_003811779.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|146286033|sp|A1YFZ3.1|APEX1_PANPA RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|146286034|sp|A2T6Y4.1|APEX1_PANTR RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|219474|dbj|BAA02633.1| APEX nuclease [Homo sapiens]
gi|1710232|gb|AAB50212.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|12803075|gb|AAH02338.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|14198174|gb|AAH08145.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|17939646|gb|AAH19291.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|30583311|gb|AAP35900.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|61358640|gb|AAX41599.1| APEX nuclease 1 [synthetic construct]
gi|61362429|gb|AAX42220.1| APEX nuclease 1 [synthetic construct]
gi|61362434|gb|AAX42221.1| APEX nuclease 1 [synthetic construct]
gi|121483845|gb|ABM54218.1| APEX1 [Pan paniscus]
gi|123981822|gb|ABM82740.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|123996645|gb|ABM85924.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|124111123|gb|ABM91939.1| APEX1 [Pan troglodytes]
gi|208965824|dbj|BAG72926.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|410220880|gb|JAA07659.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220882|gb|JAA07660.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220884|gb|JAA07661.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256572|gb|JAA16253.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256574|gb|JAA16254.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256576|gb|JAA16255.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294028|gb|JAA25614.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294030|gb|JAA25615.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294032|gb|JAA25616.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|1090503|prf||2019234A APEX nuclease
Length = 318
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 148/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 51 QKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 109
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + +
Sbjct: 110 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVT 169
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 170 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 229
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 230 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|283796572|ref|ZP_06345725.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|291075985|gb|EFE13349.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|295092540|emb|CBK78647.1| exodeoxyribonuclease III [Clostridium cf. saccharolyticum K10]
gi|295115277|emb|CBL36124.1| exodeoxyribonuclease III [butyrate-producing bacterium SM4/1]
Length = 251
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K LD +K DADIFC+QE+K Q + + P Y YW +
Sbjct: 3 KMISWNVNGLRACVGKGFLDVFRKLDADIFCIQESKLQAGQ----IDLDIPGYYQYWSYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G L++K +P V YGLG ++H GR + + + + PN+ L L
Sbjct: 59 DKKGYSGTALFSKEEPISVVYGLGIDAHDHEGRVITAEYEDYYVLTCYTPNSQNELARLP 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F +L KL+ +KPVI GDLNV+H+ IDL NP TN ++AGFT EER FS+L
Sbjct: 119 YRMEWEDAFLAYLKKLEEKKPVIFCGDLNVAHREIDLKNPRTNRKNAGFTDEERGKFSAL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D++RH YP G Y++WSY K AR +N G +YF
Sbjct: 179 LDAGFIDTYRHFYPDTEGVYSWWSYRFK-AREKNAGWRIDYF 219
>gi|299037|gb|AAB26054.1| APEX nuclease=major apurinic/apyrimidinic endonuclease [human,
Peptide, 317 aa]
Length = 317
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 149/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
+K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 50 HKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 108
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G +++ GR + + +
Sbjct: 109 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVT 168
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 169 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 228
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 229 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 284
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV+K LD+ K+ DADIFC+QE+K E QL K++ Y +W +
Sbjct: 2 KFISWNVNGIRACVQKGFLDFFKEADADIFCIQESKMQEGQL----KLELEGYHQFWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P V YG+G + ++ GR +++ PN+ L LD
Sbjct: 58 ERKGYSGTAIFTKQEPLSVAYGIGMEEHDKEGRVITLEFEEFYFVTVYTPNSQNELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F ++L KL+A+KPVI GDLNV+H+ IDL NP TN ++AGFT EER F+ L
Sbjct: 118 YRMQWETEFLKYLKKLEAKKPVIFCGDLNVAHREIDLKNPKTNRKNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+ YP++ G Y++WSY +AR++N G +YF
Sbjct: 178 LSAGFIDTFRYFYPEQEGIYSWWSYRF-SARAKNAGWRIDYF 218
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 146/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA ++K + L Y+K+EDADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQ-----PEGYHVYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K +P +V YG+G + ++ GR N F I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAVFSKQEPLQVIYGIGLEEHDQEGRVITLEFENVFVITVYTPNSRRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R++W++ ++++LD +KPVIL GDLNV+H+ IDL NP N +AGF+ +ER++F
Sbjct: 116 RIDYRMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L+ GF DSFRH+YP GAY++WSY + AR RN G +YF
Sbjct: 176 TRFLEAGFVDSFRHVYPDLEGAYSWWSYRA-GARDRNIGWRIDYF 219
>gi|30585287|gb|AAP36916.1| Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1
[synthetic construct]
gi|60653967|gb|AAX29676.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|373497233|ref|ZP_09587764.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
gi|404366853|ref|ZP_10972230.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|371963724|gb|EHO81271.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
Length = 253
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA V+K LDY K E+ADIFC+QETK E Q ++++ Y YW +
Sbjct: 2 KLISWNVNGLRAAVQKGFLDYFKNENADIFCVQETKLQEGQ----IELELEGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP +V+YGLG + ++ GR + + I PN+ L L
Sbjct: 58 EKKGYSGTAIFTKKKPIEVSYGLGIEEHDKEGRVITLEYDDFYMITVYTPNSQEELARLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +++KLD KPVI+ GDLNV+H+ IDL NP +N ++AGF+ EER F+ L
Sbjct: 118 YRMSWEDEFRNYVMKLDKLKPVIICGDLNVAHQEIDLKNPKSNRKNAGFSDEERAKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFRH YP+ TGAY++WSY AR N G +YF
Sbjct: 178 LKNGFVDSFRHFYPELTGAYSWWSYRF-NARKNNAGWRIDYF 218
>gi|297694584|ref|XP_002824554.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Pongo abelii]
gi|395745632|ref|XP_003778302.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|395745635|ref|XP_003778303.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|146286035|sp|A2T7I6.1|APEX1_PONPY RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|124054149|gb|ABM89264.1| APEX1 [Pongo pygmaeus]
Length = 318
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|395849480|ref|XP_003797352.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Otolemur
garnettii]
Length = 318
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ P
Sbjct: 57 GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPTELQ-DLPGLS 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDKFVLVTAYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L ++KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRKFLKGLTSQKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM AR++N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARAKNVGWRLDYF 285
>gi|60652565|gb|AAX28977.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G +++ GR + + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ +WNV GLRAC+ K D++ ADI C+QETK Q FP Y YW S+
Sbjct: 2 KLITWNVNGLRACMNKGFADFMTAAGADIVCVQETKMQREQ----ASFDFPGYHEYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K +P VTYGLG + ++ GR + + + + PN+ GL L+
Sbjct: 58 VKKGYSGTAVFSKTEPLSVTYGLGQEEHDQEGRVITAEYPDFYLVNVYTPNSQRGLTRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ +F ++ L +KPVI+ GDLNV+ +PIDL NP +N ++AGFT EER F
Sbjct: 118 YRMQWEDVFQDYCAGLARKKPVIVCGDLNVAAQPIDLKNPDSNHKNAGFTDEERAKFQQF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR LYP + GAYT+WSYM K AR RN G +YF
Sbjct: 178 LDHGFVDSFRSLYPDKEGAYTWWSYMFK-ARERNAGWRIDYF 218
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ ++ DAD FCLQETK E Q + P Y+ Y+ S+
Sbjct: 2 RFVSWNVNGLRAALKKGFMESFRELDADAFCLQETKMQEGQ----AILDLPGYEQYFYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+VKP V YG+G + +++ GR + + + PNA L+ LD
Sbjct: 58 EKKGYSGTAIFTRVKPLSVAYGIGISAHDNEGRVITMEFDDVYLVTVYTPNAKRALERLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L+ L A+KPV++ GDLNV+H IDL NP +N R+AGFT EER F+ L
Sbjct: 118 YRMMWEDAFRAFLLGLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP RTGAYT+WSY+ + AR N G +YF
Sbjct: 178 LQAGFIDTFRALYPDRTGAYTWWSYL-RHARETNAGWRIDYF 218
>gi|146286032|sp|A1YES6.1|APEX1_GORGO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|120974134|gb|ABM46644.1| APEX1 [Gorilla gorilla]
Length = 318
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 147/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 51 QKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 109
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + +
Sbjct: 110 ELPGLSYQYWSAPXXKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVT 169
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 170 AYVPNAGRGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 229
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 230 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|118138505|pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138506|pdb|2ISI|B Chain B, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138507|pdb|2ISI|C Chain C, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|443428279|pdb|4IEM|A Chain A, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428283|pdb|4IEM|B Chain B, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428287|pdb|4IEM|C Chain C, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428291|pdb|4IEM|D Chain D, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
Length = 317
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 148/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 50 QKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 108
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G +++ GR + + +
Sbjct: 109 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVT 168
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 169 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 228
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 229 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 284
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 140/222 (63%), Gaps = 6/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RACV+K LDY ++ +AD+FC+QETK E Q + ++ Y YW
Sbjct: 1 MKLISWNVNGIRACVRKGFLDYFQEVNADVFCIQETKLQEGQ----IDLQLEGYYQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TK KP V+YG+G ++E GR + + PN+ L L+
Sbjct: 57 AVKKGYSGTAVFTKQKPLSVSYGVGKESEDEGRIITLEFEQCYVVNVYTPNSKRDLARLE 116
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
+RL+W+ +L KL++ K VIL GDLNV+H IDL NP N ++GFTIEER ++L
Sbjct: 117 ERLQWEDDLLVYLKKLNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTL 176
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+LYP + GAYT+WSYM+K R RN G +YF
Sbjct: 177 LASGFLDTFRYLYPNQEGAYTWWSYMNKV-RERNIGWRIDYF 217
>gi|386760800|ref|YP_006234017.1| ExoA protein [Bacillus sp. JS]
gi|384934083|gb|AFI30761.1| ExoA [Bacillus sp. JS]
Length = 252
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 147/225 (65%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA ++K + L Y+K+EDADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQ-----PEGYHVYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K +P +V YG+G + ++ GR N F + PN+ GL+
Sbjct: 56 NYAVKKGYSGTAVFSKQEPLRVMYGIGIEEHDQEGRVITLEFENVFVMTIYTPNSRRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R++W++ ++++LD +KPVIL GDLNV+H+ IDL NP N ++AGF+ +ER +F
Sbjct: 116 RIDYRMQWEEALLSYILELDKKKPVILCGDLNVAHQEIDLKNPKANRKNAGFSDQERGAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
S LL+ G+ DSFRH+YP GAY++WSY + AR RN G +YF
Sbjct: 176 SRLLEAGYVDSFRHVYPDLEGAYSWWSYRA-GARDRNIGWRIDYF 219
>gi|355668893|gb|AER94340.1| APEX nuclease 1 [Mustela putorius furo]
Length = 317
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 56 GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPVELQ-ELPGLS 114
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + VPNA
Sbjct: 115 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDAFVLVTAYVPNA 174
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 175 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 234
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 235 ERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 284
>gi|402875487|ref|XP_003901536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
gi|402875489|ref|XP_003901537.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
Length = 318
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRHCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTTYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM-NARSKNVGWRLDYF 285
>gi|374295499|ref|YP_005045690.1| exodeoxyribonuclease III [Clostridium clariflavum DSM 19732]
gi|359824993|gb|AEV67766.1| exodeoxyribonuclease III [Clostridium clariflavum DSM 19732]
Length = 251
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA + K L++ K+EDADIFC+QETK E Q + + Y YW +
Sbjct: 3 KMISWNVNGIRAAMGKGFLEFFKQEDADIFCIQETKVQEGQ----ITLPLEGYCQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++TKV+P V+YG+G + +++ GR + + I PN+ GL LD
Sbjct: 59 KKKGYSGVAVFTKVEPVSVSYGIGIEEHDNEGRVITLEFDDYYVITVYTPNSQKGLTRLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L L+ KPVI+ GD NV+HK IDL NP +N ++AGFT EER F +
Sbjct: 119 YRMKWEDDFLAYLKALERNKPVIVCGDFNVAHKEIDLKNPQSNRKNAGFTDEERSKFDNY 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ GF DSFR+LYP +TGAYT+WSYM AR N G +YF
Sbjct: 179 INNGFIDSFRYLYPDKTGAYTWWSYMF-NARQNNAGWRIDYF 219
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430756766|ref|YP_007207426.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430021286|gb|AGA21892.1| Exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 252
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 146/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA ++K + L Y+K+EDADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQ-----PEGYHVYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K +P +V YG+G + ++ GR N F + PN+ GL+
Sbjct: 56 NYAVKKGYSGTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNSRRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R++W++ ++++LD +KPVIL GDLNV+H+ IDL NP N +AGF+ +ER++F
Sbjct: 116 RIDYRMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L+ GF DSFRH+YP GAY++WSY + AR RN G +YF
Sbjct: 176 TRFLEAGFVDSFRHVYPDLEGAYSWWSYRA-GARDRNIGWRIDYF 219
>gi|384475785|ref|NP_001245038.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|90078218|dbj|BAE88789.1| unnamed protein product [Macaca fascicularis]
gi|355693074|gb|EHH27677.1| hypothetical protein EGK_17940 [Macaca mulatta]
gi|355767431|gb|EHH62612.1| hypothetical protein EGM_21005 [Macaca fascicularis]
gi|383417983|gb|AFH32205.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946780|gb|AFI36995.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946782|gb|AFI36996.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946784|gb|AFI36997.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
Length = 318
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRHCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTTYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMM-NARSKNVGWRLDYF 285
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LD+ K+ DADIFC+QETK E Q + + + +YW +
Sbjct: 3 KLISWNVNGLRACVKKGFLDFFKESDADIFCIQETKLQEGQ----IDLDLDGFNSYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V G+G + +++ GR + + + PN+ GL+ LD
Sbjct: 59 EKKGYSGTAVFTKEEPLSVKIGIGIEEHDNEGRVLTLEFNDFYLVNVYTPNSKQGLERLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ +F ++L +L+ +KPVIL GDLNV+HK IDL NP N ++AGFT EER+ + L
Sbjct: 119 YRMVWEDVFRQYLKELEKKKPVILCGDLNVAHKEIDLKNPKVNRKNAGFTDEEREKITQL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D++R YP + GAY++WSY AR+ N G +YF
Sbjct: 179 LDSGFIDTYRFFYPDKEGAYSWWSYRF-NARANNAGWRIDYF 219
>gi|154502978|ref|ZP_02040038.1| hypothetical protein RUMGNA_00800 [Ruminococcus gnavus ATCC 29149]
gi|153796517|gb|EDN78937.1| exodeoxyribonuclease III [Ruminococcus gnavus ATCC 29149]
Length = 250
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACV+K L++ ++ DADIFCLQETK Q +++ Y+ YW +
Sbjct: 2 KLISWNVNGIRACVQKGFLEFFREADADIFCLQETKLQAGQ----IELDLEGYEQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VTYG+G + ++ GR +++ PN+ L LD
Sbjct: 58 VKKGYSGTAVFTKKKPLNVTYGIGIEEHDQEGRVITLEFEEFYFVTVYTPNSQNELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KL+ EKPVI GDLNV+HK IDL NP TN ++AGFT EER F+ +
Sbjct: 118 YRMKWESDFLAYLKKLEEEKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTEM 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + G Y++WSY +AR++N G +YF
Sbjct: 178 LNAGFIDTFRYFYPDQEGIYSWWSYRF-SARAKNAGWRIDYF 218
>gi|157830335|pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease
Hap1 Suggests The Recognition Of Extra-Helical
Deoxyribose At Dna Abasic Sites
Length = 287
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 26 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 84
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G +++ GR + + + VPNA
Sbjct: 85 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNA 144
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 145 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 204
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 205 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 254
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RA + K LDY K DAD+FC+QETKC E Q V+++ P Y YW +
Sbjct: 2 KCVSWNVNGVRAVLTKGFLDYFKAVDADVFCIQETKCQEGQ----VEIELPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G L++K +P V+YGLG +++ GR + + + PNA L +D
Sbjct: 58 QKKGYSGTALFSKKEPLSVSYGLGIAEHDTEGRVITAEFEEAYVVTVYTPNAQNELARID 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L KL+ KPVI+ GDLNV+H+ IDL NP TN +AGF+ EER F L
Sbjct: 118 YRMAWEDAFKAYLKKLEENKPVIICGDLNVAHQEIDLKNPKTNRGNAGFSDEERGKFGEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP GAY++WSY K AR +NTG +YF
Sbjct: 178 LEAGFIDTFRYFYPDLEGAYSWWSYRFK-AREKNTGWRIDYF 218
>gi|432942682|ref|XP_004083031.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Oryzias latipes]
Length = 298
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 141/234 (60%), Gaps = 21/234 (8%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+K G N KI SWNV GLRA VKK GLD ETKC E LP E+ P
Sbjct: 48 SKDGRSANMKITSWNVDGLRAWVKKGGLD-------------ETKCAEKDLPAEI-TSMP 93
Query: 125 EY-KTYW-LSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKN 180
EY YW +S K GY+GV + +K +P KVTYG+G K EH GR + F +
Sbjct: 94 EYPHKYWAVSDDKEGYSGVAMLSKTEPLKVTYGIG-KEEHDKEGRVITAEFPTFFLVTAY 152
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNA GL LD R WD F +L +LD +KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 153 VPNASRGLVRLDYRKTWDVDFQAYLTELDVQKPLVLCGDLNVAHQEIDLKNPKGNKKNAG 212
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER+ FS LL GF DSFR LYP++ AYT+W+YM + R++N G +YF
Sbjct: 213 FTPEEREGFSQLLAAGFVDSFRELYPEQANAYTFWTYMMNS-RAKNVGWRLDYF 265
>gi|443631581|ref|ZP_21115762.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349386|gb|ELS63442.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 252
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 145/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA ++K + L Y+K+EDADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQ-----PEGYHMYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K +P +V YG+G + ++ GR N F + PNA GL+
Sbjct: 56 NYAVKKGYSGTAVFSKQEPQRVMYGIGIEEHDQEGRVITLEFENMFVMTVYTPNAKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R++W++ ++++LD +KPVIL GDLNV+H+ IDL NP N +AGF+ +ER +F
Sbjct: 116 RIDYRMQWEEDLLSYILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQERGAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L+ GF DSFRH+YP GAY++WSY + AR RN G +YF
Sbjct: 176 TRFLEAGFIDSFRHVYPDLEGAYSWWSYRA-GARDRNIGWRIDYF 219
>gi|347549181|ref|YP_004855509.1| putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982252|emb|CBW86246.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 251
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y + DADIFCLQETK Q + + PEYK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFESVDADIFCLQETKLQAGQ----IDLDLPEYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK++P V YGL +++ GR F I PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKIEPISVRYGLDIPEHDTEGRVITLEFEKFFMITVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ ++ KLD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER F++
Sbjct: 118 YRMTFEDAILTYVKKLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTTF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+ YP GAY++WSY AR++NTG +YF
Sbjct: 178 LEAGFVDSFRYFYPDLEGAYSWWSY-RMNARAQNTGWRIDYF 218
>gi|6980804|pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980805|pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980812|pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
gi|6980813|pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 149/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
+K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 9 HKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 67
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G +++ GR + + +
Sbjct: 68 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVT 127
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 128 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 187
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 188 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 243
>gi|380796163|gb|AFE69957.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Macaca mulatta]
Length = 297
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 36 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 94
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNA
Sbjct: 95 HQYWSAPSDKEGYSGVGLLSRHCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTTYVPNA 154
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 155 GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 214
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 215 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 264
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV+K L++ + DADIFC+QETK E QL E++ Y YW +
Sbjct: 2 KFISWNVNGIRACVQKGFLEFFSQADADIFCIQETKMQEGQLSLELE----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K++P V YG+G + ++ GR + +++ PNA L LD
Sbjct: 58 VKKGYSGTAVFSKIEPLSVVYGIGIEEHDQEGRVITLEYEDFYFVTVYTPNAQNELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F L KL+ KPV++ GD+NV+HK IDL NP TN +SAGF+ EER F+ L
Sbjct: 118 YRMKWEDDFRAWLKKLEENKPVVVTGDMNVAHKEIDLKNPKTNRKSAGFSDEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP + G Y++WSY + AR +N G +YF
Sbjct: 178 LDAGFIDTFRYFYPDQEGIYSWWSYRFR-AREKNAGWRIDYF 218
>gi|313897464|ref|ZP_07831007.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
gi|312957834|gb|EFR39459.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
Length = 254
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 144/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV G+RAC++K +D+ K+ DAD+FC+QETK P +++++ P Y Y S+
Sbjct: 2 RLVSWNVNGIRACMQKGFMDFFKEIDADVFCIQETKMQ----PGQLEIETPGYYQYMNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K KP VTYGLG + ++H GR + + + PN+ GL LD
Sbjct: 58 EKKGYSGTMVFSKQKPLSVTYGLGIEEHDHEGRVITCEYEDFYLVCVYTPNSKDGLLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L KL+ K V++ GDLNV+HK IDL NP TN R+AGFT EER S L
Sbjct: 118 YRMVWEDAFRAYLHKLNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKMSVL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+LYPK+ G Y++WSY K AR +N G +YF
Sbjct: 178 LESGFIDSFRYLYPKQEGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|178743|gb|AAA58371.1| apurinic endonuclease [Homo sapiens]
Length = 318
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 144/226 (63%), Gaps = 7/226 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P + S
Sbjct: 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLSHQYWS 120
Query: 133 SP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+P K GY+GVGL ++ P KV+YG+G +++ GR + + + VPNAG GL
Sbjct: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +ER F
Sbjct: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
Query: 250 SSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|6980832|pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
gi|6980833|pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 149/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
+K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 12 HKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 70
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G +++ GR + + +
Sbjct: 71 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVT 130
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 131 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 190
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 191 AGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 246
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ K+ +AD+FCLQETK E Q + P Y+ Y+ S+
Sbjct: 2 RFVSWNVNGLRAALKKGFMESFKELNADVFCLQETKMQEGQ----AILDLPGYEQYFYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+VKP V+YG+G + +++ GR + + + + PNA L+ LD
Sbjct: 58 EKKGYSGTAIFTRVKPLSVSYGIGIEEHDNEGRVITMELPDVYLVTVYTPNAKRALERLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L+ L A+KPV++ GDLNV+H IDL NP +N R+AGFT EER F L
Sbjct: 118 YRMAWEDSFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP +TGAYT+WSY+ + AR N G +YF
Sbjct: 178 LAAGFVDTFRALYPDKTGAYTWWSYL-RHARETNAGWRIDYF 218
>gi|357060646|ref|ZP_09121414.1| exodeoxyribonuclease [Alloprevotella rava F0323]
gi|355375951|gb|EHG23219.1| exodeoxyribonuclease [Alloprevotella rava F0323]
Length = 259
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRAC K D + DAD FCLQETK QL + F Y++YW +
Sbjct: 11 KFISWNVNGLRACDGKGFRDAFRNLDADFFCLQETKMQAGQLD----IDFEGYESYWNYA 66
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK P VTYGLG +++H GR + N F I PN+ L+ LD
Sbjct: 67 EKKGYSGTAIFTKHHPLNVTYGLGHEEHDHEGRVITLEMDNFFLITVYTPNSQDELRRLD 126
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F E+L++L+ +KPVI+ GDLNV+H+ IDL NP TN R+AGFT EER+ + L
Sbjct: 127 YRMTWEDAFREYLLELNKKKPVIVCGDLNVAHQEIDLKNPKTNRRNAGFTDEEREKMTQL 186
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD+FR P TGAY++WSY + AR +N G +YF
Sbjct: 187 LNAGFTDTFRFFNPDLTGAYSWWSYRFR-AREKNAGWRIDYF 227
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC K D + +AD FCLQETK QL + F Y +YW +
Sbjct: 2 KLISWNVNGLRACCDKGFRDAFTRLNADFFCLQETKMQAGQL----DLAFDGYTSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+ +P V+YG+G +++ GR + N + + PN+ GLK LD
Sbjct: 58 EKKGYSGTAIFTRHQPLNVSYGMGIDEHDREGRVITLEMENFYLVTVYTPNSQDGLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L++LDA+KPV++ GDLNV+HK IDL NP TN +AGFT +ER+ F +L
Sbjct: 118 YRMTWEDAFRRYLLELDAKKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP++ G Y++WSY + AR +N G +YF
Sbjct: 178 LDAGFIDTFRYFYPEQEGIYSWWSYRFR-AREKNAGWRIDYF 218
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 138/224 (61%), Gaps = 9/224 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCH--ETQLPPEVKMKFPEYKTYW 130
K+ SWNV GLRACV K +DY + DADIFCLQETK + +LP E + Y YW
Sbjct: 1 MKLISWNVNGLRACVTKGFMDYFNESDADIFCLQETKLQAGQIELPLEGR-----YSQYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++TKV+P V YG+ +E GR + + PNA L
Sbjct: 56 NYAVKKGYSGTAVFTKVEPLTVRYGIEEDSEDEGRILTLEFDRFYLVNVYTPNAKRDLSR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L RLEW+ F +L++LDA+KPVI+ GDLNV+H+ IDL N +N ++GFT EER +
Sbjct: 116 LGYRLEWEDRFRAYLLELDAQKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTTEERGKMT 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GF D+FRHL+P+R A+++WS+M K R RN G +YF
Sbjct: 176 DLLESGFIDTFRHLHPERDDAFSWWSFMPKV-RERNIGWRIDYF 218
>gi|323483337|ref|ZP_08088727.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323691163|ref|ZP_08105441.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|355627198|ref|ZP_09049134.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
gi|323403435|gb|EGA95743.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323504773|gb|EGB20557.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|354820443|gb|EHF04859.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K LD K+ DADIFC+QE+K Q + ++ Y YW +
Sbjct: 3 KLISWNVNGLRACVGKGFLDIFKELDADIFCIQESKLQGGQ----IDLELDGYYQYWSYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G L+TK +P VTYGLG + ++H GR + + + I PN+ GL L
Sbjct: 59 EKKGYSGTALFTKEEPLSVTYGLGIEAHDHEGRVITAEFPDYYVITCYTPNSQDGLARLP 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KL+ KPVI GDLNV+H+ IDL NP +N ++AGFT EER F+ L
Sbjct: 119 YRMQWEDDFLSYLKKLEEHKPVIFCGDLNVAHREIDLKNPKSNRKNAGFTDEERGKFTQL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D++RH YP + G Y++WSY K AR +N G +YF
Sbjct: 179 LESGFIDTYRHFYPDQEGIYSWWSYRFK-AREKNAGWRIDYF 219
>gi|164688495|ref|ZP_02212523.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM
16795]
gi|164602908|gb|EDQ96373.1| exodeoxyribonuclease III [Clostridium bartlettii DSM 16795]
Length = 252
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV K LD+ + DADIFCLQETK E Q +++ P Y YW +
Sbjct: 2 KFISWNVNGIRACVTKGFLDFFNEVDADIFCLQETKLQEGQ----IELDLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YG+ + ++ GR N +++ PN+ + LK LD
Sbjct: 58 EKKGYSGTAIFTKQEPISVNYGIQIEEHDKEGRVITLEFDNFYFVTVYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F ++L+KL+++K VI+ GDLNV+HK IDL NP TN ++AGFT +ER+ F+ L
Sbjct: 118 YRMKWEDDFRKYLLKLNSKKGVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDQEREKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D++RH P + G Y++WSY K AR +N G +YF
Sbjct: 178 LESGFIDTYRHFNPDKEGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|266623165|ref|ZP_06116100.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
gi|288865076|gb|EFC97374.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
Length = 251
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K LDY K+ DADIFC+QE+K E Q ++++ Y YW +
Sbjct: 3 KLISWNVNGLRACVGKGFLDYFKEVDADIFCIQESKLSEGQ----IELELSGYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YG+G + ++H GR + + + + PN+ GL L
Sbjct: 59 EKKGYSGTAMFTKEEPLSVAYGIGIEEHDHEGRVITAEFSDYYVVTCYTPNSKDGLARLP 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L L+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER F+ L
Sbjct: 119 YRMVWEDAFLRYLKGLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR YP R Y++WSY +ARS+N G +YF
Sbjct: 179 LDAGFIDTFRWFYPDREEIYSWWSYRF-SARSKNAGWRIDYF 219
>gi|154688190|ref|YP_001423351.1| ExoA [Bacillus amyloliquefaciens FZB42]
gi|154354041|gb|ABS76120.1| ExoA [Bacillus amyloliquefaciens FZB42]
Length = 252
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 144/219 (65%), Gaps = 9/219 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA +KK ++ Y+++ ADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMKKIDINTYVQETAADILCLQETKVQDGQVSLQ-----PEGYHAYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K KP V YGLG + + GR + F + PNA GL+
Sbjct: 56 NYAVKKGYSGTAVFSKEKPLHVLYGLGIDDHDQEGRVITLEFEHVFVVNCYTPNAKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D RL+W+ F ++L KLD +KPVIL GDLNV+H+ IDL NP N ++AGF+ +ER++F
Sbjct: 116 RIDYRLQWEADFKDYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
S+LL+ GFTDSFR+LYP + GAY++WSY + AR +N G
Sbjct: 176 SALLNAGFTDSFRYLYPDQEGAYSWWSYRT-NAREKNIG 213
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 139/223 (62%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWLS 132
K SWNV GLRACV K +D+ + DADIFCLQETK E Q+ PE Y++YW
Sbjct: 2 KFISWNVNGLRACVTKGFMDFFNEVDADIFCLQETKLQEGQIDLN-----PEGYESYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK KP V YG+G +++H GR + +++ PN+ LK L
Sbjct: 57 ADKKGYSGTAIFTKKKPLSVAYGIGIDEHDHEGRVITLEFEDFYFVTVYTPNSQTELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W+ F +L LD++KPV++ GDLNV+HK IDL NP TN ++AGFT EER+ F+
Sbjct: 117 EYRMRWEDDFRAYLKNLDSKKPVVMCGDLNVAHKEIDLKNPKTNRKNAGFTDEERNKFTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP G Y++WSY AR N G +YF
Sbjct: 177 FLESGFIDTFRYFYPDAEGMYSWWSYRF-NARKNNAGWRIDYF 218
>gi|167759302|ref|ZP_02431429.1| hypothetical protein CLOSCI_01649 [Clostridium scindens ATCC 35704]
gi|336422208|ref|ZP_08602360.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663176|gb|EDS07306.1| exodeoxyribonuclease III [Clostridium scindens ATCC 35704]
gi|336009118|gb|EGN39116.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
Length = 250
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV+K +++ ++ DADIFC+QE+K E QL E P Y YW +
Sbjct: 2 KFVSWNVNGIRACVQKGFMEFFQEADADIFCIQESKMQEGQLELET----PGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YG+G + ++ GR + ++I PN+ L L
Sbjct: 58 KKKGYSGTAIFTKQEPISVSYGIGIEEHDQEGRVITLEFEDYYFITVYTPNSQNELARLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KL+ KPVI GDLNV+HK IDL NP TN ++AGFT EER F+SL
Sbjct: 118 YRMQWEDDFLAYLKKLEEAKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFTSL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+D GF D+FR+ YP G Y++WSY +AR++N G +YF
Sbjct: 178 VDAGFIDTFRYFYPDAQGIYSWWSY-RFSARAKNAGWRIDYF 218
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 145/224 (64%), Gaps = 8/224 (3%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRA ++K + L Y+K+EDADI CLQETK + Q V ++ Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQ----VDLQPDGYHVYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G +++K +P +V YG+G + ++ GR N F + PN+ GL+
Sbjct: 57 YAVKKGYSGTAVFSKQEPLRVMYGIGIEEHDQEGRVITLEFENLFVMTVYTPNSKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
+D R++W++ ++++LD +KPVIL GDLNV+H+ IDL NP N +AGF+ +ER +F+
Sbjct: 117 IDYRMQWEEALLSYILELDKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQERGAFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GF DSFRH+YP GAY++WSY + AR RN G +YF
Sbjct: 177 RLLEAGFVDSFRHVYPDLEGAYSWWSYRA-GARDRNIGWRLDYF 219
>gi|309775417|ref|ZP_07670420.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916806|gb|EFP62543.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 254
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 145/223 (65%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
++ SWNV G+RAC++K +D+ + DADIFC+QETK P +++++ P Y Y S
Sbjct: 1 MRLVSWNVNGIRACMQKGFMDFFNEIDADIFCIQETKMQ----PGQLEIETPLYHQYMNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P V+YGLG + ++H GR + + + PN+ GL L
Sbjct: 57 AEKKGYSGTMVFSKQEPIHVSYGLGIEEHDHEGRVITCEYEDFYLVCVYTPNSKDGLLRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+EW+ F +L KL+ K V++ GDLNV+HK IDL NP TN R+AGFT EER+ S
Sbjct: 117 DYRMEWEDAFRTYLHKLNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERNKMSV 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF DS+R+LYP++ G Y++WSY K AR +N G +YF
Sbjct: 177 LLDSGFIDSYRYLYPEQEGVYSWWSYRFK-AREKNAGWRIDYF 218
>gi|281423696|ref|ZP_06254609.1| exodeoxyribonuclease III [Prevotella oris F0302]
gi|281402248|gb|EFB33079.1| exodeoxyribonuclease III [Prevotella oris F0302]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 139/222 (62%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K+ + +AD FCLQETK QL ++FP Y +YW +
Sbjct: 2 KFISWNVNGLRACVGKDFSQSFETLNADFFCLQETKMQAGQL----DLQFPGYTSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +Y + +P VTYG+G +++H GR N F + PNA GL+ LD
Sbjct: 58 DKKGYSGTAIYARKEPIAVTYGIGIDEHDHEGRVITLEYDNFFLVTVYTPNAQDGLRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +LD +KPVI+ GDLNV+H+ IDL NP +N R+AGFT EERD + L
Sbjct: 118 YRMTWEDDFQAYLHRLDEQKPVIVCGDLNVAHQEIDLKNPKSNRRNAGFTDEERDKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR LYP++ Y++WSY + AR +N G +YF
Sbjct: 178 LSHGFTDTFRTLYPEQV-TYSWWSYRFR-AREKNAGWRIDYF 217
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 129/222 (58%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K Y+K+ + DIFC+QETK E Q+ E EY YW
Sbjct: 1 MKLISWNVNGLRACVTKGFYTYLKETNPDIFCVQETKLQEGQILME---NMEEYTQYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TK+KP V YGL E GR + + PN L L
Sbjct: 58 AEKKGYSGTAIFTKIKPLSVHYGLEENGEPEGRTITLEFEKFYLVNVYTPNTKRDLSRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW+ F +L +LDA KPVI+ GDLNV+H+ IDL N N +AGFT EER+ S L
Sbjct: 118 YRLEWEDRFRSYLQQLDASKPVIICGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH YP RT Y++WSYM K R RN G +YF
Sbjct: 178 LGAGFIDTFRHFYPDRTEVYSWWSYMPK-VRERNIGWRIDYF 218
>gi|336433570|ref|ZP_08613387.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016006|gb|EGN45803.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
Length = 250
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACV+K L++ ++ DADIFCLQETK Q +++ Y+ YW +
Sbjct: 2 KLISWNVNGIRACVQKGFLEFFREADADIFCLQETKLQAGQ----IELDLEGYEQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP +TYG+G + ++ GR +++ PN+ L LD
Sbjct: 58 VKKGYSGTAVFTKKKPLNMTYGIGIEEHDQEGRVITLEFEEFYFVTVYTPNSQNELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KL+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER F+ +
Sbjct: 118 YRMKWESDFLAYLKKLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTEM 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP + G Y++WSY +AR++N G +YF
Sbjct: 178 LDAGFIDTFRYFYPDQEGIYSWWSYRF-SARAKNAGWRIDYF 218
>gi|325970995|ref|YP_004247186.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
gi|324026233|gb|ADY12992.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
Length = 250
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 138/217 (63%), Gaps = 7/217 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRA ++K+G D Y+K+ +ADIFCLQETK E Q + + Y TYW
Sbjct: 1 MKLVSWNVNGLRA-IQKKGFDEYLKQSNADIFCLQETKLQEDQ----ISLVTEGYHTYWS 55
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G L++K +P V G+G ++ GR + + + PN+ L L
Sbjct: 56 FAEKKGYSGTALFSKQEPVSVQRGIGHPLDNEGRTVTAEFEQFYVVCCYTPNSQEALARL 115
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++WD+ F ++ L + KPVI+ GDLNV+H+ IDL +P N R+AG++IEER+ F+S
Sbjct: 116 DTRMDWDEAFRSYVCSLASMKPVIICGDLNVAHQSIDLRHPKANERNAGYSIEERNQFTS 175
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LLD GF D+FR+LYP R G Y++WSY K AR N G
Sbjct: 176 LLDAGFIDTFRYLYPNREGIYSWWSYRFK-ARENNAG 211
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 144/224 (64%), Gaps = 7/224 (3%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
+ K SWNV GLRAC+KK + K+ DAD FCLQETK P ++++ P Y YW
Sbjct: 3 SLKYISWNVNGLRACMKKGFMQSFKELDADCFCLQETKLQ----PDQIELDLPGYYQYWN 58
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
S+ K GY+G L+TK+KP VTYG+G + ++ GR ++ + + PN+ GL
Sbjct: 59 SAVKKGYSGTALFTKIKPLSVTYGIGMEEHDQEGRVITADFNDHCLVTCYTPNSQRGLAR 118
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L R++W+ F ++L+ L +KPVIL GDLNV+H+ IDLANP +N +AGFT +ER+ +
Sbjct: 119 LTYRMKWEDDFKKYLLDLSKKKPVILCGDLNVAHEEIDLANPASNHMNAGFTDDERNKMT 178
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTDSFR+L+ + AY++WSY +K+ R RN G +YF
Sbjct: 179 ELLSDGFTDSFRYLHQDKKDAYSWWSYFAKS-RERNIGWRIDYF 221
>gi|373465510|ref|ZP_09556970.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
gi|371760225|gb|EHO48917.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
Length = 256
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 132/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK+ DAD FC+QETK QL + P Y Y+ +
Sbjct: 6 KFISWNVNGLRAVVKKDFDKTFNDLDADFFCIQETKMQAGQLA----LTLPGYHQYFNYA 61
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK P V YG+ + +H GR + + VPN+GA LK LD
Sbjct: 62 ERKGYSGTAIFTKHAPLNVYYGIQSDEFDHEGRAITLEYPTFYLVTSYVPNSGAKLKRLD 121
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WD F ++L L+ EKPVIL GDLNV+HK IDL NP TN +AGFT EER+SFS
Sbjct: 122 FRMGWDVAFQQYLANLNKEKPVILCGDLNVAHKTIDLKNPQTNHHNAGFTDEERNSFSHF 181
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD+GF D+FRH YP T Y++WSY AR RN G +YF
Sbjct: 182 LDQGFMDTFRHFYPDMTDIYSWWSYRFH-ARDRNAGWRIDYF 222
>gi|418030667|ref|ZP_12669152.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471726|gb|EHA31839.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 252
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 145/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA ++K + L Y+K+EDADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQ-----PEGYHVYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K +P +V YG+G + ++ GR N F + PN+ GL+
Sbjct: 56 NYAVKKGYSGTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNSRRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R++W++ ++++LD +KPVIL GDLNV+H+ IDL NP N +AGF+ +ER +F
Sbjct: 116 RIDYRMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQERGAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L+ GF DSFRH+YP GAY++WSY + AR RN G +YF
Sbjct: 176 TRFLEAGFVDSFRHVYPDLEGAYSWWSYRA-GARDRNIGWRIDYF 219
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ K+ DAD FCLQETK E Q + P Y+ Y+ S+
Sbjct: 7 RFVSWNVNGLRAALKKGFMESFKELDADAFCLQETKMQEGQ----AILDLPGYEQYFYSA 62
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+VKP V YGLG + ++H GR + + + PN+ L LD
Sbjct: 63 EKKGYSGTAIFTRVKPLSVAYGLGIEEHDHEGRVITMEFEDIYLVTVYTPNSKNALARLD 122
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W+ F L+ L A+KPV++ GDLNV+H IDL NP +N R+AGFT EER + L
Sbjct: 123 YRLVWEDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKLTEL 182
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP TGAYT+WSY+ + AR N G +YF
Sbjct: 183 LGAGFIDTFRALYPDLTGAYTWWSYL-RHARETNAGWRIDYF 223
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| exodeoxyribonuclease III [Anaerofustis stercorihominis DSM 17244]
Length = 251
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ +WNV GLRACV K +D+ + D+DIF +QETK + Q ++M P Y+ YW +
Sbjct: 2 KLVTWNVNGLRACVNKGFMDFFNEVDSDIFSVQETKLQKGQ----IEMDIPGYEEYWDYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++K+KP V GL K GR + N + + PN+ LK LD
Sbjct: 58 EKKGYSGTATFSKIKPISVKTGLEEEKFSKEGRVITAEYENFYLVNVYTPNSQNELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F ++L +LD KPVI+ GDLNV+H+ IDL NP TN ++AGFTIEERD +SL
Sbjct: 118 YRMEWEDYFADYLCELDKVKPVIMCGDLNVAHREIDLKNPKTNKKNAGFTIEERDKMTSL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L +GF DS+R+LYP G YT+WSY AR N G +YF
Sbjct: 178 LKRGFVDSYRYLYPDIEGVYTWWSYRF-NARKNNAGWRIDYF 218
>gi|403071080|ref|ZP_10912412.1| exodeoxyribonuclease [Oceanobacillus sp. Ndiop]
Length = 253
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 135/223 (60%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RACVKK LDY + DADIFC+QE+K E Q + ++ Y YW
Sbjct: 1 MKLVSWNVNGIRACVKKGFLDYFNEIDADIFCIQESKLQEGQ----INLELDGYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++TK KP V YGLG + N+ GR F + PN+ L L
Sbjct: 57 AIRKGYSGTAVFTKKKPLHVRYGLGKEDNQEEGRIITLEFNEFFLVNVYTPNSKRDLTRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D RLEW+ + +L +LD EKPVI GDLNV+H+ IDL N TN ++GFT +ER +
Sbjct: 117 DYRLEWEDELYSYLRELDEEKPVIYCGDLNVAHQEIDLKNHKTNHGNSGFTAQERGKMTR 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF D+ RH +P + G Y++WSYM KT R RN G +YF
Sbjct: 177 LLDSGFVDTLRHFHPDKEGIYSWWSYM-KTIRERNIGWRIDYF 218
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACV+K D+ K+ DADIFC+QE+K Q +++ F Y YW +
Sbjct: 2 KLISWNVNGIRACVQKGFCDFFKEVDADIFCIQESKLQAGQ----IELDFEGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P +VTYG+G + ++ GR + + + PN+ L L
Sbjct: 58 EKKGYSGTAIFTKKEPLQVTYGMGIEEHDKEGRVITLEFEDFYMVTVYTPNSQNELARLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F L KL+ KPV++ GDLNV+HK IDL NP TN +AGFTIEER FS L
Sbjct: 118 YRMEWEDEFRRFLKKLEETKPVVVCGDLNVAHKEIDLKNPNTNQMNAGFTIEERTKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP Y++WSY K AR +NTG +YF
Sbjct: 178 LEAGFIDTFRYFYPDAMDMYSWWSYRFK-AREKNTGWRIDYF 218
>gi|332263793|ref|XP_003280936.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263795|ref|XP_003280937.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263797|ref|XP_003280938.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263799|ref|XP_003280939.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|441667374|ref|XP_004091971.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
Length = 318
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKTATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVGL ++ P KV+YG+G + ++ GR + + + VPNA
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNA 175
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 176 GRGLVRLEYRQRWDEALRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 138/223 (61%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+ K +D+ ADIFC+QETK + Q V++ Y YW +
Sbjct: 2 KLVSWNVNGIRACLAKGFMDFFNSVSADIFCIQETKVQQGQ----VQLDLEGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ GY+G L+T+ KP V G+G NEH GR + + + PN+ GL L
Sbjct: 58 IRKGYSGTALFTREKPLSVVDGIGM-NEHDNEGRVLTAEYDKFYLVTVYTPNSQRGLTRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F E+L +LD KPVI+ GDLNV+H+ ID+ NP N R+AGFT EER+ +
Sbjct: 117 DYRMKWEDDFREYLKRLDTTKPVIICGDLNVAHREIDIKNPEANRRNAGFTDEEREKMTM 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTDSFR+LYP +T AYT+WSYM AR +N G +YF
Sbjct: 177 LIQSGFTDSFRYLYPDKTDAYTWWSYMF-NAREKNIGWRIDYF 218
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 129/222 (58%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K Y+K+ + DIFC+QETK E Q+ E EY YW
Sbjct: 1 MKLISWNVNGLRACVTKGFYTYLKETNPDIFCVQETKLQEGQILME---NMEEYTQYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TK+KP V YGL E GR + + PN L L
Sbjct: 58 AEKKGYSGTAIFTKIKPLSVHYGLEENGEPEGRTITLEFEKFYLVNVYTPNTKRDLSRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW+ F +L +LDA KPVI+ GDLNV+H+ IDL N N +AGFT EER+ S L
Sbjct: 118 YRLEWEDRFRSYLQQLDASKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH YP RT Y++WSYM K R RN G +YF
Sbjct: 178 LGAGFIDTFRHFYPDRTEVYSWWSYMPK-VRERNIGWRIDYF 218
>gi|421882518|ref|ZP_16313789.1| Exodeoxyribonuclease III [Helicobacter bizzozeronii CCUG 35545]
gi|375315363|emb|CCF81785.1| Exodeoxyribonuclease III [Helicobacter bizzozeronii CCUG 35545]
Length = 250
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 140/221 (63%), Gaps = 7/221 (3%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
+ SWNV GLRAC++K +++++ ADIFC+QETK H P + F +Y ++W S+
Sbjct: 3 LVSWNVNGLRACMQKGFKEFLEQSGADIFCVQETKMH----PEQANFIFEDYASFWNSAQ 58
Query: 135 KAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GY+GV +K P TYG+G +++ GR N + + VPN+ GL LD
Sbjct: 59 KKGYSGVLTLSKNAPINTTYGIGVAQHDLEGRVVTCEYANFYLVNVYVPNSQRGLLRLDY 118
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
RL+W++ F + L L K V++ GDLNV+HK IDL NP +N +AGF+ EER +FS LL
Sbjct: 119 RLKWEEAFRQFLADLMGHKAVVVCGDLNVAHKEIDLKNPESNHHNAGFSPEERHAFSQLL 178
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
D G D++RH YP + G YT+WSYM++ AR+RN G +YF
Sbjct: 179 DLGLIDTYRHFYPNQQGIYTWWSYMNE-ARARNIGWRIDYF 218
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK ++ ++ DAD FCLQETK E Q +++ FP Y YW +
Sbjct: 2 KFISWNVNGLRAIVKKGFVEIFEELDADFFCLQETKLQEGQ----IELDFPGYYDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V+YG+G +++ GR + N + + PN+ + LK LD
Sbjct: 58 EKKGYSGTAIFTKHKPLDVSYGIGKPEHDQEGRVITLSYPNYYVVTCYTPNSKSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KLD+EKPVIL GDLNV+H+ IDL N TN SAGF+ EER FS+L
Sbjct: 118 YRMQWEDDFQLYLKKLDSEKPVILCGDLNVAHENIDLKNWKTNQLSAGFSKEERMKFSAL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP GAYT+W+Y AR N G +YF
Sbjct: 178 LDAGFIDTFRYFYPDLEGAYTWWNYRF-NARKTNAGWRIDYF 218
>gi|431795205|ref|YP_007222110.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785431|gb|AGA70714.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 250
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 138/223 (61%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+ K +D+ +KE ADIFCLQETK Q+P +++ Y YW +
Sbjct: 2 KLISWNVNGIRACLNKGFMDFFEKEQADIFCLQETKIQADQIPFQLE----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G ++TK +P KVTYG+G K EH GR + + PN+ GL L
Sbjct: 58 QKKGYSGTAVFTKQEPLKVTYGIG-KEEHDQEGRVITLEFEGFYLVTVYTPNSQRGLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W++ F L L+ KPVI GDLN++H IDL NP TN ++AGF+ EER F
Sbjct: 117 EYRMTWEEEFLSFLKNLEQAKPVIFCGDLNMAHTEIDLKNPKTNRKNAGFSDEERAKFGE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL KGF D+FR+ YP +T AYT+WSYM AR+ N G +YF
Sbjct: 177 LLKKGFIDTFRYFYPDKTEAYTWWSYMF-NARANNAGWRIDYF 218
>gi|317497391|ref|ZP_07955713.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895311|gb|EFV17471.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 250
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACVKK LD+ + DADIFC+QE+K E QL + PEY YW +
Sbjct: 2 KFISWNVNGIRACVKKGFLDFFNETDADIFCIQESKMQEGQL----DLNLPEYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G G++TK +P V YGLG + ++ GR + ++I PN+ + L L
Sbjct: 58 VKKGYSGTGIFTKEEPISVFYGLGIEEHDQEGRVITLEFKDYYFITVYTPNSQSELARLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F +L KL+ +KPVI GDLNV+ + IDL NP TN ++AGFT EER+ ++
Sbjct: 118 YRMKWEEDFLAYLKKLEEKKPVIFCGDLNVAVEEIDLKNPKTNRKNAGFTDEEREKMRTI 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+LYP +TG Y++WSY AR N G +YF
Sbjct: 178 LNNGFIDTFRYLYPDQTGIYSWWSYRF-NARKNNAGWRIDYF 218
>gi|449096551|ref|YP_007429042.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
gi|449030466|gb|AGE65705.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
Length = 252
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 145/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA ++K + L Y+K+EDADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQ-----PEGYHVYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K +P +V YG+G + ++ GR N F + PN+ GL+
Sbjct: 56 NYALKKGYSGTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFENVFVMTVYTPNSRRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R++W++ ++++LD +KPVIL GDLNV+H+ IDL NP N +AGF+ +ER +F
Sbjct: 116 RIDYRMQWEEALLSYILELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQERGAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L+ GF DSFRH+YP GAY++WSY + AR RN G +YF
Sbjct: 176 TRFLEAGFVDSFRHVYPDLEGAYSWWSYRA-GARDRNIGWRIDYF 219
>gi|15893514|ref|NP_346863.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|337735433|ref|YP_004634880.1| exodeoxyribonuclease ExoA [Clostridium acetobutylicum DSM 1731]
gi|384456943|ref|YP_005669363.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|15023055|gb|AAK78203.1|AE007535_5 Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|325507632|gb|ADZ19268.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|336292303|gb|AEI33437.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum DSM 1731]
Length = 250
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K LDY K+ DAD+FCLQETK E Q V+++ P Y +W +
Sbjct: 2 KLISWNVNGLRACITKGFLDYFKEVDADVFCLQETKIQEGQ----VELELPGYYDFWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP +YG+ K++ GR + + + PN+ L L+
Sbjct: 58 EKKGYSGTAIFTKKKPISYSYGINEEKHDKEGRVITLEFEDFYMVTVYTPNSKEKLARLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F +L LD +KPVI+ GD+NV+H IDL NP TNT++AGF+ EER F+ L
Sbjct: 118 YRMEWEDSFRNYLKALDEKKPVIVCGDMNVAHTEIDLKNPKTNTKNAGFSPEERSKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D++R+ YP + G Y++WSY K AR +N G +YF
Sbjct: 178 LEAGFIDTYRYFYPDKEGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y DADIFCLQETK Q + + P YK YW +
Sbjct: 2 KLISWNVNGLRAVVKKGFLEYFDSVDADIFCLQETKLQAGQ----IDLDLPGYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YGLG + ++ GR N F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKKEPLSVQYGLGIEEHDTEGRVITLEFENFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ ++ KLD KPVIL GDLNV+H+ IDL NP TN ++AGF+ EER F++
Sbjct: 118 YRMTFEDAILAYVKKLDETKPVILCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+ YP AY++WSY AR+RNTG +YF
Sbjct: 178 LEAGFVDSFRYFYPDLEDAYSWWSY-RMNARARNTGWRIDYF 218
>gi|302345223|ref|YP_003813576.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
gi|302150206|gb|ADK96468.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
Length = 249
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV KE K DAD FCLQETK QL + FP Y++YW +
Sbjct: 2 KFISWNVNGLRACVGKEFEQQFKDLDADFFCLQETKMQAGQL----DLSFPGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YTK KP VTYG+ +++H GR + + + + PN+ GL+ L+
Sbjct: 58 DKKGYSGTAIYTKHKPLSVTYGIDIDEHDHEGRVITLEMEDFYLVTVYTPNSQDGLRRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KLD +KPVI+ GD+NV+H+ IDL NP TN ++AGFT EER+ + L
Sbjct: 118 YRMKWEDDFQAYLHKLDEKKPVIVCGDMNVAHQEIDLKNPKTNHKNAGFTDEEREKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP++ Y++WSY + AR +NTG +YF
Sbjct: 178 LSNGFIDTFRTLYPEQV-TYSWWSYRFR-AREKNTGWRIDYF 217
>gi|346314587|ref|ZP_08856106.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|373124043|ref|ZP_09537885.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|422327142|ref|ZP_16408169.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
gi|345906322|gb|EGX76051.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|371659875|gb|EHO25135.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|371663836|gb|EHO29020.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
Length = 254
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 144/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV G+RAC++K +D+ K+ DAD+FC+QETK P +++++ P Y Y S+
Sbjct: 2 RLVSWNVNGIRACMQKGFMDFFKEIDADVFCIQETKMQ----PGQLEIETPGYYQYMNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K KP VTYGLG + ++H GR + + + PN+ GL LD
Sbjct: 58 EKKGYSGTMVFSKQKPLSVTYGLGIEEHDHEGRVITCEYEDFYLVCVYTPNSKDGLLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L KL+ K V++ GDLNV+HK IDL NP TN R+AGFT EER S L
Sbjct: 118 YRMVWEDAFRAYLHKLNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKMSVL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+LYP++ G Y++WSY K AR +N G +YF
Sbjct: 178 LESGFIDSFRYLYPEQEGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LD+ +++ADIFCLQETK E Q ++++ Y +W +
Sbjct: 2 KLISWNVNGLRACVKKGFLDFFHEQNADIFCLQETKLQEGQ----IELELDGYHQFWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V YG+G ++E GR + + + NA L L
Sbjct: 58 LKKGYSGTAVFTKQKPISVRYGVGELESEDEGRIITLEFDSFYLVNVYTINAKRDLSRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
+RLEW+ E+L+ LD KPV+ GDLNV+H +DL N +N ++GFT+EER ++L
Sbjct: 118 ERLEWEDALKEYLLDLDRHKPVVYCGDLNVAHAEVDLKNARSNHGNSGFTLEERGKMTTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+LYP+RT A+T+WSYM + R+RN G +YF
Sbjct: 178 LESGFIDSFRYLYPERTDAFTWWSYM-RDVRARNIGWRIDYF 218
>gi|304384068|ref|ZP_07366522.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
gi|304334784|gb|EFM01060.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
Length = 250
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 146/222 (65%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K + + DAD FCLQETK E QL ++F Y+ YW +
Sbjct: 2 KFVSWNVNGLRACVGKSFEESFRMLDADFFCLQETKMQEGQL----NLQFEGYEAYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YT+ +P V+YG+G + ++H GR + + + PN+ GLK L
Sbjct: 58 EKKGYSGTAIYTRHQPQSVSYGMGVEAHDHEGRIITLEMPGFYLVTVYTPNSQDGLKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F +++ KLDA+KPVI+ GD+NV+H+ ID+ NP TN +AGFT EER+ F++L
Sbjct: 118 YRMQWEEDFLQYIKKLDAKKPVIICGDMNVAHEEIDIKNPKTNRHNAGFTDEERNKFTTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L +GFTD+FR+ YP++ Y++WSY + AR++N G +YF
Sbjct: 178 LSEGFTDTFRYKYPEQV-RYSWWSYRFQ-ARAKNAGWRIDYF 217
>gi|421526611|ref|ZP_15973218.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257168|gb|EJU07643.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 253
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK E QL ++K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSEGQLDLDLK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + I PN+ L+ LD
Sbjct: 58 EKKGYSGTAIFTKEEPLSVSYGLGIEEHDKEGRVITLEFEKFYMITVYTPNSKDELQRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FRH YP AY++WSY + AR NTG +YF
Sbjct: 178 LAAGFTDTFRHFYPDLEHAYSWWSYRA-NARKNNTGWRIDYF 218
>gi|32024|emb|CAA42437.1| HAP1 [Homo sapiens]
Length = 318
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 147/237 (62%), Gaps = 7/237 (2%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
K + G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++
Sbjct: 51 QKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ- 109
Query: 122 KFPEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIR 178
+ P + S+P K GY+GVGL ++ P KV+YG+G +++ GR + + +
Sbjct: 110 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVT 169
Query: 179 KNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRS 238
VPNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++
Sbjct: 170 AYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKN 229
Query: 239 AGFTIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
AGFT +E F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 230 AGFTPQEAQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYM-MNARSKNVGWRLDYF 285
>gi|225548156|ref|ZP_03769441.1| hypothetical protein RUMHYD_00135 [Blautia hydrogenotrophica DSM
10507]
gi|225040687|gb|EEG50933.1| exodeoxyribonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 251
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RAC+KK +Y ++ +ADIFC+QETKC E Q V++ P Y YW S+
Sbjct: 2 KFISWNVNGIRACLKKGFEEYFQEANADIFCIQETKCQEGQ----VELTLPGYHQYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K +P V+YG+G + ++ GR + +++ PN+ L L
Sbjct: 58 VRKGYSGTAIFAKREPLSVSYGIGIEEHDQEGRVITLEYEDFYFVTVYTPNSQNELARLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F E+L KL+ KPV+ GDLNV+H+ IDL NP TN ++AGFT EER F+ +
Sbjct: 118 YRMDWERDFLEYLTKLEERKPVVWCGDLNVAHQEIDLKNPKTNRKNAGFTDEERACFTKV 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + G Y++WSY + AR +N G +YF
Sbjct: 178 LESGFIDTFRYFYPDQEGIYSWWSYRFR-AREKNAGWRIDYF 218
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 137/230 (59%), Gaps = 13/230 (5%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +KK L+ DAD FCLQETK Q V + P+Y YW +
Sbjct: 2 KFISWNVNGLRAVLKKNFLEVFTDLDADFFCLQETKLQAGQ----VDLDLPDYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VT GLG + GR + + + PN+ LK LD
Sbjct: 58 QKKGYSGTAIFTKKKPLAVTKGLGLAEFDQEGRVLTLEYEDFYLVNCYTPNSQDKLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL+W+ F +HL L +KPVIL GDLNV+H IDL NP N ++AGF+I+ER + ++L
Sbjct: 118 FRLQWEAAFSDHLTNLATKKPVILCGDLNVAHNEIDLKNPKPNQKNAGFSIQERQAMTAL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG-------CTNYFGP 295
L +GFTD+FRH+Y +TGAY++WSY AR+RN G C+N P
Sbjct: 178 LARGFTDTFRHIYLDKTGAYSWWSY-RFNARARNAGWRIDYFICSNALLP 226
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422345838|ref|ZP_16426752.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|373227503|gb|EHP49817.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
Length = 250
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 137/224 (61%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LDY K EDADIFCLQETK E Q + + Y YW +
Sbjct: 2 KLISWNVNGLRACVKKGFLDYFKSEDADIFCLQETKLQEGQ----IDLDLEGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGLKT 190
K GY+G ++TK +P V YG+ EH+ GR + F + PN+ + L
Sbjct: 58 EKKGYSGTAIFTKKEPLNVYYGINM--EHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R+EW+ F +L++L ++K V++ GDLNV+HK IDL NP TN ++AGFT EERD FS
Sbjct: 116 LEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFS 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL GF D+FR+ P G Y++WSY AR N G +YF
Sbjct: 176 TLLSSGFIDTFRYFNPDLEGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|299821801|ref|ZP_07053689.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
gi|299817466|gb|EFI84702.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
Length = 254
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 136/223 (60%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA VKK DY K+ DADIFC+QETK Q+ E Y YW +
Sbjct: 2 RFISWNVNGLRAAVKKGFSDYFKEADADIFCVQETKLQAGQIELE---GLEGYHDYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGL--GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G ++TK +P V YGL N+ GR +++ PN+ A LK L
Sbjct: 59 VKKGYSGTAVFTKEEPLSVQYGLPEDVHNQE-GRVITLEFPAFYFVTVYTPNSQAELKRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R EW++ F +H++ LD +KPV+ GDLNV+H+ IDL NP TN ++ GF+ +ER F
Sbjct: 118 DYRTEWEQAFADHIIALDKQKPVVFCGDLNVAHQEIDLKNPKTNRKNPGFSDQERAMFGQ 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF D+FR+LYP++ AY++WSY ARSRN G +YF
Sbjct: 178 LLDNGFVDTFRYLYPEQEDAYSWWSY-RMNARSRNVGWRIDYF 219
>gi|417409485|gb|JAA51243.1| Putative exodeoxyribonuclease iii, partial [Desmodus rotundus]
Length = 301
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 40 GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLS 98
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNA 184
+ S+P K GY+GVG+ ++ P KV+YG+G + ++ GR + + VPNA
Sbjct: 99 HQYWSAPSDKEGYSGVGILSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNA 158
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
G GL L+ R WD+ F + L + + KP++L GDLNV+H+ IDL NP N ++AGFT +
Sbjct: 159 GRGLVRLEYRQRWDEAFRKFLKGVASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 218
Query: 245 ERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 219 ERQGFGELLQAVPLVDSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYF 268
>gi|336435960|ref|ZP_08615673.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008000|gb|EGN38019.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
Length = 250
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV+K D ++ DADIFC+QETK E QL E+ Y YW +
Sbjct: 2 KLVSWNVNGLRACVQKGFQDIFREIDADIFCVQETKMQEGQLDLEL----DGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P VTYG+G + ++ GR + +++ PN+ LK LD
Sbjct: 58 VKKGYSGTAVFTKQEPIGVTYGIGIEEHDQEGRVITCEFEDFYFVTVYTPNSQNELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L LD +KPV++ GD+NV+H IDL NP +N ++AGFT EER F+ L
Sbjct: 118 YRMRWEDDFRAYLKALDEKKPVVVTGDMNVAHAEIDLKNPKSNRQNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP + G Y++WSY K AR +N G +YF
Sbjct: 178 LDAGFIDTFRYFYPDQEGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|350268379|ref|YP_004879686.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601266|gb|AEP89054.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 252
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 144/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA ++K + L Y+K+EDADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQ-----PEGYHVYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K KP V YG+G + ++ GR N F + PN+ GL+
Sbjct: 56 NYAVKKGYSGTAVFSKQKPLHVMYGIGIEEHDQEGRVITLEFENLFVMTVYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R++W++ ++++LD +KPVIL GDLNV+H+ IDL NP N +AGF+ +ER +F
Sbjct: 116 RIDYRMQWEEALLSYILELDKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSEQERGAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L+ GF DSFRH+YP GAY++WSY + AR RN G +YF
Sbjct: 176 TRFLEAGFVDSFRHVYPDLEGAYSWWSYRA-GARDRNIGWRLDYF 219
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACVKK LD+ ++ DAD+FCLQETK + Q + ++ P Y+ YW +
Sbjct: 2 KFVSWNVNGLRACVKKGFLDFFQQVDADVFCLQETKLQKGQ----ISLELPGYEQYWNDA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK P VTYG+G E+ GR + + PNA L L
Sbjct: 58 ERKGYSGTAIFTKHSPLSVTYGIGDHFPENEGRVITLEFETYYVVTMYTPNAKRDLSRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL+W+K E+L L +KPV+ GDLNV+H+PID+ N N ++GFT EER F L
Sbjct: 118 YRLQWEKAAREYLTLLATQKPVVFCGDLNVAHQPIDVRNDRANVGNSGFTDEERAEFGKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP A+T+WSYM+ R+RN G +YF
Sbjct: 178 LEAGFVDTFRHFYPDDEDAFTWWSYMANV-RARNIGWRIDYF 218
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 141/223 (63%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC++K D+ +E+ADIFC+QETK H P + F Y+++W S+
Sbjct: 2 KLISWNVNGLRACMQKGFADFFNREEADIFCVQETKMH----PEQADFAFDGYQSFWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNV--PNAGAGLKTL 191
K GY+G ++T+V P V Y +G + EH G + + + NV PN+ L L
Sbjct: 58 EKKGYSGTAVFTRVPPLSVRYDMG-EPEHTGEGRVITVESEAFFLVNVYTPNSQRDLVRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L+ L+ +KPV++ GD+NV+H+ ID+ NP +N +AGFT EER +
Sbjct: 117 DYRMRWEDAFRAYLLTLNRDKPVVVCGDMNVAHREIDIKNPKSNIHNAGFTPEERQKMTD 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GF D+FR LYP++ AYT+WSYM K AR RN G +YF
Sbjct: 177 LLEAGFIDTFRALYPEQKDAYTWWSYMRK-ARERNAGWRIDYF 218
>gi|330843681|ref|XP_003293776.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
gi|325075853|gb|EGC29694.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
Length = 249
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 150/226 (66%), Gaps = 9/226 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWL 131
K+ SWNVAG R+ + K DY+ KE+ DI CLQETK T++ K P Y+ +++
Sbjct: 1 LKVISWNVAGFRSVLTKGFSDYVVKENPDILCLQETKIKPTEVQ---KSSIPSGYEYHFV 57
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGA-GLK 189
S+ +AG+ G GL TK+KP + +G+G K++ GR + + + + +PN+G+ GLK
Sbjct: 58 SADQAGHHGTGLLTKLKPLSLKFGIGIAKHDTEGRVITAEYDDFYLVNTYIPNSGSRGLK 117
Query: 190 TLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
LD R+ EWD F ++LV+LD +KPV+ GDLNV+H IDL NP TNT+SAGFTI+ER S
Sbjct: 118 NLDYRIKEWDVDFQKYLVELDKKKPVVWCGDLNVAHTEIDLKNPKTNTKSAGFTIQERTS 177
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
F L+KGF DS+RH P + GA+T+W+YM AR++N G +YF
Sbjct: 178 FGDFLNKGFIDSYRHYNPGKEGAFTFWTYMGG-ARAKNVGWRLDYF 222
>gi|281422472|ref|ZP_06253471.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
gi|281403455|gb|EFB34135.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
Length = 250
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 141/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K+ + K+ DAD FCLQETK E QL ++F Y++YW +
Sbjct: 2 KFISWNVNGLRACVGKDFENQFKELDADFFCLQETKMQEGQLD----LQFEGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YTK KP V+YG+G + ++H GR + + PN+ LK LD
Sbjct: 58 EKKGYSGTAIYTKHKPLNVSYGMGVEEHDHEGRIITLEYDQFYLVTCYTPNSQTELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L LDA+KPVI+ GDLNV+H+ ID+ NP TN R+AGFT EER+ + L
Sbjct: 118 YRMTWEDDFRKFLKSLDAKKPVIICGDLNVAHEEIDIKNPKTNRRNAGFTDEEREKMTVL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTDSFR+L+P Y++WSY K AR +N G +YF
Sbjct: 178 LNDGFTDSFRYLHPDEV-TYSWWSYRFK-AREKNAGWRIDYF 217
>gi|373471031|ref|ZP_09562109.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371761191|gb|EHO49827.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 259
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA V K LD+ + DADIFC+QE+K E Q +++ P Y YW +
Sbjct: 10 KMISWNVNGLRAAVTKGFLDFFRDIDADIFCIQESKLSEGQ----IELDLPGYYDYWNYA 65
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++TK KP VTYG+G + +++ GR + + + I PN+ GL L+
Sbjct: 66 QKKGYSGVAVFTKDKPLNVTYGIGIEEHDNEGRVITAEYEDFYMITCYTPNSQRGLTRLE 125
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +++++L+ KPVI GDLNV+H IDL NP TN ++AGFT EER +
Sbjct: 126 YRMTWEDAFLKYILELEKNKPVIFCGDLNVAHTEIDLKNPKTNRKNAGFTDEERAKMDVI 185
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR LYP +T AY++WSYM AR++N G +YF
Sbjct: 186 LSSGFVDSFRVLYPDKTDAYSWWSYMG-GARAKNVGWRIDYF 226
>gi|110801105|ref|YP_695823.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
gi|110675752|gb|ABG84739.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
Length = 250
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 137/224 (61%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LDY K EDADIFCLQETK E Q + + Y YW +
Sbjct: 2 KLISWNVNGLRACVKKGFLDYFKSEDADIFCLQETKLQEGQ----IDLDLEGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGLKT 190
K GY+G ++TK +P V YG+ EH+ GR + F + PN+ + L
Sbjct: 58 EKKGYSGTAIFTKKEPLNVYYGINM--EHHDKEGRVITLEFEDLFMVTVYTPNSQSELAR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R+EW+ F +L++L ++K V++ GDLNV+HK IDL NP TN ++AGFT EERD FS
Sbjct: 116 LEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFS 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL GF D+FR+ P G Y++WSY AR N G +YF
Sbjct: 176 TLLSSGFIDTFRYFNPDLEGVYSWWSY-RFNARKNNAGWRIDYF 218
>gi|258648040|ref|ZP_05735509.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
gi|260851895|gb|EEX71764.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
Length = 250
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA K D + DAD FCLQETK E QL + F Y++YW +
Sbjct: 2 KFISWNVNGLRAVDGKGFRDIFRAIDADFFCLQETKMQEGQL----DIAFDGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V GLG +++H GR + + + + PN+ L+ LD
Sbjct: 58 EKKGYSGTAIFTKHKPLSVQIGLGIDEHDHEGRVITLELDDFYLVCVYTPNSQDELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W++ F HL KLDA KPVI+ GD+NV+H+ IDL NP TN R+AGFT EER+ + L
Sbjct: 118 YRMIWEEAFQAHLHKLDAHKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEEREKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+ +P TGAY++WSY + AR +NTG +YF
Sbjct: 178 LSNGFIDTFRYFHPDLTGAYSWWSYRFR-AREKNTGWRIDYF 218
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 143/222 (64%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK L+Y K+ DADIFC+QE+K E Q + ++ Y +YW +
Sbjct: 5 KLISWNVNGLRACVKKGFLEYFKEIDADIFCIQESKLQEGQ----IDLELDGYTSYWNYA 60
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V G+G + +++ GR N + + PN+ GL+ LD
Sbjct: 61 EKKGYSGTAVFTKEEPLTVKRGIGIEEHDNEGRVLTLEYGNFYLVNVYTPNSKQGLERLD 120
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ +F ++L +L+ KPVI+ GDLNV+HK IDL NPT+N ++AGFT EER S L
Sbjct: 121 YRMVWEDVFRKYLKELEKNKPVIICGDLNVAHKEIDLKNPTSNRKNAGFTDEERSKISEL 180
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D++R+ YP + G Y++WSY AR+ N G +YF
Sbjct: 181 LEAGFIDTYRYFYPDKEGMYSWWSYRF-NARANNAGWRIDYF 221
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 137/224 (61%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LDY K EDADIFCLQETK E Q + + Y YW +
Sbjct: 2 KLISWNVNGLRACVKKGFLDYFKSEDADIFCLQETKLQEGQ----IDLDLEGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGLKT 190
K GY+G ++TK +P V YG+ EH+ GR + F + PN+ + L
Sbjct: 58 EKKGYSGTAIFTKKEPLNVYYGINM--EHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R+EW+ F +L++L ++K V++ GDLNV+HK IDL NP TN ++AGFT EERD FS
Sbjct: 116 LEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFS 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL GF D+FR+ P G Y++WSY AR N G +YF
Sbjct: 176 TLLSSGFIDTFRYFNPDIEGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|401564907|ref|ZP_10805765.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
gi|400188269|gb|EJO22440.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
Length = 250
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ K+ DAD FCLQETK E Q + P Y+ Y+ S+
Sbjct: 2 RFVSWNVNGLRAALKKGFMESFKELDADAFCLQETKMQEGQ----AILDLPGYEQYFYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T++KP V+YG+G + +++ GR + + + PN+ GL LD
Sbjct: 58 EKKGYSGTAIFTRLKPLSVSYGIGIEEHDNEGRVITMEFEDVYLVTVYTPNSKNGLLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L+ L A+KPV++ GDLNV+H IDL NP +N R+AGFT EER F+ L
Sbjct: 118 YRMVWEDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP TGAYT+WSY+ + AR N G +YF
Sbjct: 178 LAAGFVDTFRALYPDLTGAYTWWSYL-RHARETNAGWRIDYF 218
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 137/224 (61%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LDY K EDADIFCLQETK E Q + + Y YW +
Sbjct: 2 KLISWNVNGLRACVKKGFLDYFKSEDADIFCLQETKLQEGQ----IDLDLEGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGLKT 190
K GY+G ++TK +P V YG+ EH+ GR + F + PN+ + L
Sbjct: 58 EKKGYSGTAIFTKKEPLNVYYGINM--EHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R+EW+ F +L++L ++K V++ GDLNV+HK IDL NP TN ++AGFT EERD FS
Sbjct: 116 LEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFS 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL GF D+FR+ P G Y++WSY AR N G +YF
Sbjct: 176 TLLSSGFIDTFRYFNPDLEGIYSWWSYRF-NARKNNAGWRIDYF 218
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 128/222 (57%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRACV K Y+K+ + DIFC+QETK E Q+ E EY YW
Sbjct: 1 MKLISWNVNGLRACVTKGFYTYLKETNPDIFCVQETKLQEGQILME---NMEEYTQYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TK KP V YGL E GR + + PN L L
Sbjct: 58 AEKKGYSGTAIFTKFKPLSVHYGLEENGEPEGRTITLEFERFYLVNVYTPNTKRDLSRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW+ F +L +LDA KPVI+ GDLNV+H+ IDL N N +AGFT EER+ S L
Sbjct: 118 YRLEWEDRFRNYLQQLDASKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH YP RT Y++WSYM K R RN G +YF
Sbjct: 178 LGAGFIDTFRHFYPDRTDVYSWWSYMPK-VRERNIGWRIDYF 218
>gi|299141239|ref|ZP_07034376.1| exodeoxyribonuclease III [Prevotella oris C735]
gi|298577199|gb|EFI49068.1| exodeoxyribonuclease III [Prevotella oris C735]
Length = 250
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 139/222 (62%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K+ + +AD FCLQETK QL ++FP Y +YW +
Sbjct: 2 KFISWNVNGLRACVGKDFSQSFETLNADFFCLQETKMQAGQL----DLQFPGYTSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +Y + +P VTYG+G +++H GR N F + PNA GL+ LD
Sbjct: 58 DKKGYSGTAIYARKEPIAVTYGIGIDEHDHEGRVITLEYDNFFLVTVYTPNAQDGLRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +LD +KPVI+ GDLNV+H+ IDL NP +N R+AGFT EER+ + L
Sbjct: 118 YRMTWEDDFQAYLHRLDEQKPVIVCGDLNVAHQEIDLKNPKSNRRNAGFTDEEREKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR LYP++ Y++WSY + AR +N G +YF
Sbjct: 178 LSHGFTDTFRTLYPEQV-TYSWWSYRFR-AREKNAGWRIDYF 217
>gi|345884610|ref|ZP_08836014.1| exodeoxyribonuclease [Prevotella sp. C561]
gi|345042603|gb|EGW46699.1| exodeoxyribonuclease [Prevotella sp. C561]
Length = 249
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 142/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K+ K +AD FCLQETK QL + FP Y++YW +
Sbjct: 2 KFISWNVNGLRACVGKDFEQQFKDLNADFFCLQETKMQAGQL----DLSFPGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YTK KP VTYG+ +++H GR + + + I PN+ GL+ LD
Sbjct: 58 DKKGYSGTAIYTKHKPLNVTYGIDIDEHDHEGRVITLEMDDFYLITVYTPNSQDGLRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F +L +LDA KPVI+ GD+NV+H+ IDL NP TN ++AGFT EER+ + L
Sbjct: 118 YRMKWEEDFQAYLHRLDAIKPVIVCGDMNVAHQEIDLKNPKTNHKNAGFTDEEREKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP++ Y++WSY + AR +NTG +YF
Sbjct: 178 LSNGFIDTFRTLYPEKV-TYSWWSYRFR-AREKNTGWRIDYF 217
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 137/224 (61%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LDY K EDADIFCLQETK E Q + + Y YW +
Sbjct: 2 KLISWNVNGLRACVKKGFLDYFKSEDADIFCLQETKLQEGQ----IDLDLEGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGLKT 190
K GY+G ++TK +P V YG+ EH+ GR + F + PN+ + L
Sbjct: 58 EKKGYSGTAIFTKKEPLNVYYGINM--EHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R+EW+ F +L++L ++K V++ GDLNV+HK IDL NP TN ++AGFT EERD FS
Sbjct: 116 LEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFS 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL GF D+FR+ P G Y++WSY AR N G +YF
Sbjct: 176 TLLSSGFIDTFRYFNPDLEGIYSWWSYRF-NARKNNAGWRIDYF 218
>gi|407706141|ref|YP_006829726.1| hypothetical protein MC28_2905 [Bacillus thuringiensis MC28]
gi|407383826|gb|AFU14327.1| Exodeoxyribonuclease [Bacillus thuringiensis MC28]
Length = 252
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 144/224 (64%), Gaps = 8/224 (3%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q + + Y TYW
Sbjct: 1 MKLISWNVNGLRAVITKGGFLEYLEESNADIFCLQEIKLQSGQ----IDLNLEGYYTYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 57 YAVKKGYSGTAIFTKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R+EW+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 117 LDYRMEWEDDFRAYIKQLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++RHLYP + GAY++WSY AR++N G +YF
Sbjct: 177 RILEEGFVDTYRHLYPNQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|422422487|ref|ZP_16499440.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y DADIFCLQETK Q + + P YK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFDSVDADIFCLQETKLQAGQ----IDLDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YGLG +++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKTEPLSVQYGLGIPEHDDEGRVITLEFDKFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ ++ KLD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER F++
Sbjct: 118 YRMTFEDAILAYVKKLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+ YP AY++WSY AR+RNTG +YF
Sbjct: 178 LEAGFVDSFRYFYPDLEDAYSWWSY-RMNARARNTGWRIDYF 218
>gi|402574713|ref|YP_006624056.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
gi|402255910|gb|AFQ46185.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
Length = 251
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 139/223 (62%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACVK LD+ +KE+ADIFCLQETK Q+P Y YW +
Sbjct: 2 KLISWNVNGIRACVKNGFLDFFQKENADIFCLQETKVQADQIP----FNLEGYYQYWNFA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G ++TK +P K+ YG+G + EH GR + + PN+ GL L
Sbjct: 58 QKKGYSGTAIFTKKEPMKICYGIG-QEEHDKEGRVITLEFEKHYVVTVYTPNSQRGLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R++W++ F + + L+ KPVI GDLNV+H+ IDL NP++N ++AGF++EER+ F
Sbjct: 117 EYRMKWEEEFLKFIKDLEKNKPVIFCGDLNVAHEEIDLKNPSSNRKNAGFSMEERNKFGE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ GF D+FR+ YP +T AYT+WSYM AR N G +YF
Sbjct: 177 IIKSGFIDTFRYFYPDKTNAYTWWSYMF-NARVNNAGWRIDYF 218
>gi|429766260|ref|ZP_19298534.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
gi|429185240|gb|EKY26229.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
Length = 250
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACV+K LD+ + +ADIFC+QE+K E Q+ E+K Y YW +
Sbjct: 2 KLISWNVNGIRACVQKGFLDFFNEVNADIFCIQESKLQEGQINLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YGLG + ++ GR + F I PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKKEPLSVRYGLGIEEHDKEGRVITLEFEDFFMITVYTPNSQNELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F ++L L+ KPVI+ GDLNV+HK IDL NPTTN ++AGFT EER+ +SL
Sbjct: 118 YRMKWEDDFKKYLKHLEKSKPVIVCGDLNVAHKEIDLKNPTTNRKNAGFTDEEREKLTSL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP+ TG Y++WSY AR N G +YF
Sbjct: 178 LNDGFIDTFRYFYPETTGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +DY + DADIFCLQETK E Q +++ Y YW +
Sbjct: 2 KFISWNVNGLRAAVKKGFMDYFNEADADIFCLQETKLQEGQ----IELDLNGYYDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P +V YGL +++ GR ++I PN+ L L
Sbjct: 58 VKKGYSGTAIFTKKEPLRVFYGLSVAEHDQEGRVITLEFEQFYFITVYTPNSQPELARLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ +++ F ++ LD EKPVI GDLNV+HK IDL NP TN R+ GF+ EER F+++
Sbjct: 118 YRMSFEEAFLNYVKNLDQEKPVIFCGDLNVAHKEIDLKNPKTNRRNPGFSDEERGKFTTV 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP++ GAY++WSY AR+RNTG +YF
Sbjct: 178 LESGFVDTFRHFYPEKEGAYSWWSY-RMNARARNTGWRIDYF 218
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|422874042|ref|ZP_16920527.1| exodeoxyribonuclease III [Clostridium perfringens F262]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|380305037|gb|EIA17320.1| exodeoxyribonuclease III [Clostridium perfringens F262]
Length = 250
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 137/224 (61%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LDY K EDADIFCLQETK E Q + + Y YW +
Sbjct: 2 KLISWNVNGLRACVKKGFLDYFKSEDADIFCLQETKLQEGQ----IDLDLEGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGLKT 190
K GY+G ++TK +P V YG+ EH+ GR + F + PN+ + L
Sbjct: 58 EKKGYSGTAIFTKKEPLNVYYGINM--EHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R+EW+ F +L++L ++K V++ GDLNV+HK IDL NP TN ++AGFT EERD FS
Sbjct: 116 LEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFS 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL GF D+FR+ P G Y++WSY AR N G +YF
Sbjct: 176 TLLSSGFIDTFRYFNPDLEGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 137/224 (61%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LDY K EDADIFCLQETK E Q + + Y YW +
Sbjct: 2 KLISWNVNGLRACVKKGFLDYFKSEDADIFCLQETKLQEGQ----IDLDLEGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGLKT 190
K GY+G ++TK +P V YG+ EH+ GR + F + PN+ + L
Sbjct: 58 EKKGYSGTAIFTKKEPLNVYYGINM--EHHDKEGRVITLEFEDFFMVTVYTPNSQSELAR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R+EW+ F +L++L ++K V++ GDLNV+HK IDL NP TN ++AGFT EERD FS
Sbjct: 116 LEYRMEWEDDFRNYLLELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFS 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL GF D+FR+ P G Y++WSY AR N G +YF
Sbjct: 176 TLLSSGFIDTFRYFNPDLEGVYSWWSY-RFNARKNNAGWRIDYF 218
>gi|429726547|ref|ZP_19261335.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
gi|429146016|gb|EKX89089.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
Length = 267
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRAC +K + + DAD FCLQETK E Q + + F Y++YW +
Sbjct: 19 KFISWNVNGLRACREKGFEESFAQLDADCFCLQETKLQEGQ----IDIAFDGYESYWNYA 74
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T++KP V YGLG + ++H GR + + + PN+ GL+ LD
Sbjct: 75 EKKGYSGTCIFTRIKPLSVRYGLGIEEHDHEGRVITLEFEDLYLLTVYTPNSQDGLRRLD 134
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WD F ++ +LDA KPV++ GDLNV+H+ IDL NP TN ++AGFT EER FS L
Sbjct: 135 YRMTWDDDFRAYVQQLDAHKPVVICGDLNVAHQEIDLKNPKTNRKNAGFTDEERQKFSQL 194
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD++R P T +Y++WSY K AR +N G +YF
Sbjct: 195 LEAGFTDTYRFFNPDLTDSYSWWSYRFK-AREKNAGWRIDYF 235
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ + +ADIFC+QE+K + Q F Y YW S+
Sbjct: 2 KLISWNVNGLRACMNKGFMDFFNEVNADIFCIQESKMQKDQ----GDFSFQGYSEYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV + +K+KP +VTY +G + ++ GR + + + PNA L+ L+
Sbjct: 58 EKKGYSGVVVLSKIKPLQVTYDMGISHHDKEGRIITAEYERFYLVNVYTPNAKRELERLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F + KL KPV++ GDLNV+HK IDL NP TN R+AGFT EER S L
Sbjct: 118 YRMEWEDDFRAFVKKLKKHKPVVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKMSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP GAY++WSYM K AR NTG +YF
Sbjct: 178 LESGFIDTFRHFYPTLEGAYSWWSYMGK-ARENNTGWRIDYF 218
>gi|451821030|ref|YP_007457231.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787009|gb|AGF57977.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 252
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC K LD+ K+ DADIFC+QE+K E Q + + YK+YW +
Sbjct: 3 KLISWNVNGLRACAGKGFLDFFKEVDADIFCIQESKLQEGQ----IDLDLEGYKSYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V G+G +++++ GR + + + + PN+ L+ LD
Sbjct: 59 EKKGYSGTAVFTKEEPISVKKGIGISEHDNEGRVITAEYDDFYLVTVYTPNSKQALERLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ +F ++L +L+ +KPVI+ GDLNV+HK IDL NP N R+AGFT EERD S L
Sbjct: 119 YRMVWEDVFRKYLKELEEKKPVIVCGDLNVAHKEIDLKNPKANRRNAGFTDEERDKMSEL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D++RH YP G Y++WSY AR+ N G +YF
Sbjct: 179 LEAGFIDTYRHFYPDVEGVYSWWSYRF-NARANNAGWRIDYF 219
>gi|423616001|ref|ZP_17591835.1| exodeoxyribonuclease [Bacillus cereus VD115]
gi|401260538|gb|EJR66711.1| exodeoxyribonuclease [Bacillus cereus VD115]
Length = 252
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 143/224 (63%), Gaps = 8/224 (3%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRA + K G L+Y++ +ADIFCLQE K Q + + Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEASNADIFCLQEIKLQSGQ----IDLNLEGYYTYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 57 YAVKKGYSGTAIFTKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R+EW+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 117 LDYRMEWEDDFRAYIKQLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++RHLYP + GAY++WSY AR++N G +YF
Sbjct: 177 RILEEGFVDTYRHLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|66817330|ref|XP_642518.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
gi|161784257|sp|P51173.2|APEA_DICDI RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=Class II apurinic/apyrimidinic(AP)-endonuclease
gi|60470608|gb|EAL68586.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
Length = 361
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 148/229 (64%), Gaps = 7/229 (3%)
Query: 69 EEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKT 128
EE KI SWNVAG ++ + K +Y++KE+ D+ CLQETK + + + + K EY
Sbjct: 101 EENQMKIISWNVAGFKSVLSKGFTEYVEKENPDVLCLQETKINPSNIKKDQMPKGYEY-- 158
Query: 129 YWLSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGA- 186
+++ + + G+ G G+ TK KPN +T+G+G K+++ GR + + +PNAG
Sbjct: 159 HFIEADQKGHHGTGVLTKKKPNAITFGIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTR 218
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL+ LD R+ EWD F +L KL+A KP+I GDLNV+H IDL NP TN +SAGFTIEE
Sbjct: 219 GLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEE 278
Query: 246 RDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R SFS+ L+KG+ DS+RH P + G+YT+WSY+ RS+N G +YF
Sbjct: 279 RTSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLG-GGRSKNVGWRLDYF 326
>gi|423385244|ref|ZP_17362500.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|423528399|ref|ZP_17504844.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
gi|401635300|gb|EJS53055.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|402452062|gb|EJV83881.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
Length = 252
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 145/223 (65%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K+G L+Y+++ ADIFCLQE K E Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKDGFLEYLEESSADIFCLQEIKLQEGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ FS
Sbjct: 118 DYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFVDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|331092367|ref|ZP_08341193.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401391|gb|EGG80977.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
Length = 250
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACV+K LD+ + DADIFC+QE+K E QL E++ Y YW +
Sbjct: 2 KLISWNVNGIRACVQKGFLDFFHQADADIFCIQESKMQEGQLQLELE----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P VTYG+G + ++ GR ++ PN+ L LD
Sbjct: 58 EKKGYSGTAVFTKEEPLSVTYGMGIEEHDKEGRLITLEFPEFYFATVYTPNSQNELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F ++ KL+ +KPVI GDLNV+H+ IDL NP TN ++AGFT EER F L
Sbjct: 118 YRMQWETDFLAYMKKLEEKKPVIFCGDLNVAHREIDLKNPKTNRKNAGFTDEERGKFGEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP G Y++WSY + AR +N G +YF
Sbjct: 178 LDAGFIDTFRYFYPDMEGIYSWWSYRFR-AREKNAGWRIDYF 218
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 136/223 (60%), Gaps = 6/223 (2%)
Query: 73 FKIASWNVAGLRACVKKEGL-DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRACV K DY ++ DAD+FC+QETK E QL E+ +YW
Sbjct: 1 MKLVSWNVNGLRACVNKGCFTDYFEQIDADVFCVQETKMQEGQLSLELG---DNIHSYWN 57
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K++P V YGL E GR + + + PNA L L
Sbjct: 58 YALKKGYSGTAVFSKIEPISVRYGLEEDEEAEGRILTLEFASFYLVNVYTPNAKRDLSRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
RLEW+ F +++V+LD +KPVI+ GDLNV+H+ ID+ N +N ++GFT EER F+
Sbjct: 118 PYRLEWEDRFRKYIVQLDEKKPVIICGDLNVAHQEIDIKNAKSNVGNSGFTHEERGKFNE 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF DSFR LYP RT AYT+WS+M K R RN G +YF
Sbjct: 178 LLGAGFLDSFRELYPDRTDAYTWWSFMPKV-RERNIGWRIDYF 219
>gi|398309083|ref|ZP_10512557.1| exodeoxyribonuclease III [Bacillus mojavensis RO-H-1]
Length = 252
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 142/225 (63%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA ++K + L Y+K EDADI CLQETK + Q+ E PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKDEDADIVCLQETKIQDGQVDLE-----PEGYHVYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K KP V YG+G + ++ GR N + + PNA GL+
Sbjct: 56 NYAEKKGYSGTAVFSKQKPLNVMYGIGIEEHDQEGRVITLEFENMYVMTVYTPNAKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D RL+W++ +++LD +KPVIL GDLNV+H+ IDL NP N +AGF+ +ER +F
Sbjct: 116 RIDYRLQWEEALLAFILELDKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQERGAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L+ GF DSFR+LYP GAY++WSY + AR RN G +YF
Sbjct: 176 TRFLEAGFIDSFRYLYPDLEGAYSWWSYRA-GARDRNIGWRLDYF 219
>gi|160936797|ref|ZP_02084163.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
gi|158440289|gb|EDP18035.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
Length = 251
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K LD+ ++ +AD+FC+QE+K E Q +++ P Y YW +
Sbjct: 3 KLISWNVNGLRACVGKGFLDFFREAEADVFCIQESKLQEGQ----IELDLPGYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YG+G + ++ GR + + + PN+ GL LD
Sbjct: 59 RKKGYSGTAMFTKEEPVSVSYGIGMEEHDTEGRVITAEFPEYYVVTCYTPNSQDGLARLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KL+ KPV+ GDLNV+HK IDL NP TN ++AGFT EER F+ L
Sbjct: 119 YRMKWEDDFLAYLKKLEENKPVVFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+ YP G Y++WSY +AR++N G +YF
Sbjct: 179 LAAGFVDTFRYFYPDLEGTYSWWSYRF-SARAKNAGWRIDYF 219
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + I PN+ L+ LD
Sbjct: 58 EKKGYSGTAIFTKEEPLSVSYGLGIEEHDKEGRVITLEFEKFYMITVYTPNSKDELQRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD+FR+ YP AY++WSY + AR NTG +YF
Sbjct: 178 LESGFTDTFRYFYPDLEHAYSWWSYRA-NARKNNTGWRIDYF 218
>gi|317503938|ref|ZP_07961946.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
gi|315664964|gb|EFV04623.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
Length = 250
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 139/222 (62%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K+ + +AD FCLQETK QL +++FP Y +YW +
Sbjct: 2 KFISWNVNGLRACVGKDFSQSFESLNADFFCLQETKMQAGQL----ELQFPGYTSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YT+ +P V+YG+G +++H GR F + PNA L+ LD
Sbjct: 58 EKKGYSGTAIYTRKEPLAVSYGIGIDEHDHEGRVITLEYDKFFLVTVYTPNAQEELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +LDA+KPVI+ GD+NV+H+ IDL NP TN RSAGFT EER + L
Sbjct: 118 YRMTWEDAFQAYLHQLDAKKPVIVCGDMNVAHQEIDLKNPKTNRRSAGFTDEERSKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR L+P++ Y+YWSY + AR +N G +YF
Sbjct: 178 LSNGFTDTFRTLHPEQI-TYSYWSYRFR-AREKNAGWRIDYF 217
>gi|260682949|ref|YP_003214234.1| exodeoxyribonuclease [Clostridium difficile CD196]
gi|260686547|ref|YP_003217680.1| exodeoxyribonuclease [Clostridium difficile R20291]
gi|260209112|emb|CBA62286.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260212563|emb|CBE03542.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
Length = 255
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV K LD+ K+ DADIFCLQETK E Q +++ P Y YW +
Sbjct: 7 KFISWNVNGIRACVGKGFLDFFKEVDADIFCLQETKLQEGQ----IELDLPGYFQYWNYA 62
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P KV YG+ + ++ GR + +++ PN+ + LK L+
Sbjct: 63 ERKGYSGTAIFTKKEPLKVMYGINIEEHDKEGRVITLEFEDFYFVTVYTPNSQSELKRLE 122
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W+ F ++L KLD KPVI+ GD+NV+HK IDL NP N ++AGFT EER+ FS L
Sbjct: 123 YRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKL 182
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D++R+ P + G Y++WSY AR N G +YF
Sbjct: 183 LDSGFIDTYRYFNPDKEGVYSWWSYRF-NARKNNAGWRIDYF 223
>gi|311070625|ref|YP_003975548.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|419820989|ref|ZP_14344593.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
gi|310871142|gb|ADP34617.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|388474900|gb|EIM11619.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
Length = 252
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 144/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K + Y+++E+ DIFCLQE K + Q+ E PE Y YW
Sbjct: 1 MKLMSWNVNGLRALLTKMNFNSYLEEENVDIFCLQEIKLQDGQIKLE-----PEGYHVYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG K ++ GR N + I PNA GL+
Sbjct: 56 NYAEKKGYSGTAIFTKKEPLAVTYGLGIKEHDQEGRLITLEFENMYVITVYTPNAKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R++W+ F ++ LD +KPV+L GDLNV+H+ IDL NP N ++AGF+ +ER+ F
Sbjct: 116 RIDYRMDWEDAFLSYIKALDVKKPVVLCGDLNVAHQEIDLKNPKANRKNAGFSDQERERF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
S +L++GF D+FR+L+P + GAY++WSY AR++N G +YF
Sbjct: 176 SQMLEEGFIDTFRYLHPDQEGAYSWWSY-RMNARAKNVGWRLDYF 219
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACVKK LD+++ E D C+QETK E Q + ++ Y YW +
Sbjct: 2 KFISWNVNGLRACVKKGFLDFVEAEQPDFLCVQETKLQEGQ----IDLQLDGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P +VTYGL +++ GR + + + PN+ L LD
Sbjct: 58 VKKGYSGTAIFTKHEPLQVTYGLNIAEHDQEGRVITLEYNDFYLVTVYTPNSQNELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W++ F +L+ LD KPVI+ GDLNV+H+ IDL NP TNT++AGFTIEER+ + L
Sbjct: 118 YRLTWEEAFRNYLIGLDVLKPVIVCGDLNVAHQQIDLKNPKTNTKNAGFTIEERNEMTKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + Y++WSY + AR++N G +YF
Sbjct: 178 LNSGFIDTFRYFYPTKENCYSWWSYRAG-ARAKNVGWRIDYF 218
>gi|366166303|ref|ZP_09466058.1| exodeoxyribonuclease III [Acetivibrio cellulolyticus CD2]
Length = 251
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 138/223 (61%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RA + K D+ +KEDADIFC+QETK E Q +++ F Y YW
Sbjct: 2 LKMISWNVNGIRAVMGKGFTDFFQKEDADIFCIQETKVQEGQ----IEIPFEGYYKYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+GV ++TK+KP V+YG+G + ++ GR + + PN+ GL L
Sbjct: 58 AEKKGYSGVAVFTKIKPITVSYGIGIEEHDKEGRVITLEFDEYYVVTVYTPNSQRGLTRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R++W+ F +L L+ KPVI+ GDLNV+HK IDL NP +N ++AGFT EER F S
Sbjct: 118 HYRMKWEDDFLSYLKSLERYKPVIVCGDLNVAHKEIDLKNPQSNKKNAGFTEEERSKFDS 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ GF D+FR+ YP R G YT+WSYM +R N G +YF
Sbjct: 178 YVNNGFIDTFRYFYPDRIGVYTWWSYMF-NSRQNNAGWRIDYF 219
>gi|421893824|ref|ZP_16324317.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
gi|385273309|emb|CCG89689.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
Length = 251
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VK LD K+ DADIFC+QETK E Q ++++ P Y YW +
Sbjct: 2 KLISWNVNGLRAAVKHGFLDVFKELDADIFCIQETKLQEGQ----IELELPHYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V YGLG K++ GR + I PN+ LK L+
Sbjct: 58 EKKGYSGTAIFTKKKPLTVRYGLGIEKHDQEGRVITLEFEKFYVITCYTPNSQPKLKRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WD F ++ +L+ KPVI GDLNV+H+ IDL N TN ++AGFT EER+ F+ L
Sbjct: 118 YRMAWDDAFRAYIDQLNQHKPVIFCGDLNVAHQEIDLKNDKTNHKNAGFTDEERNKFTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD++R+ YP + G Y++WSY AR+ N G +YF
Sbjct: 178 LNSGFTDTYRYFYPSKEGVYSWWSYRF-NARANNAGWRIDYF 218
>gi|126698940|ref|YP_001087837.1| exodeoxyribonuclease [Clostridium difficile 630]
gi|254974886|ref|ZP_05271358.1| putative exodeoxyribonuclease [Clostridium difficile QCD-66c26]
gi|255092273|ref|ZP_05321751.1| putative exodeoxyribonuclease [Clostridium difficile CIP 107932]
gi|255100359|ref|ZP_05329336.1| putative exodeoxyribonuclease [Clostridium difficile QCD-63q42]
gi|255306301|ref|ZP_05350472.1| putative exodeoxyribonuclease [Clostridium difficile ATCC 43255]
gi|255314013|ref|ZP_05355596.1| putative exodeoxyribonuclease [Clostridium difficile QCD-76w55]
gi|255516693|ref|ZP_05384369.1| putative exodeoxyribonuclease [Clostridium difficile QCD-97b34]
gi|255649791|ref|ZP_05396693.1| putative exodeoxyribonuclease [Clostridium difficile QCD-37x79]
gi|306519893|ref|ZP_07406240.1| putative exodeoxyribonuclease [Clostridium difficile QCD-32g58]
gi|384360536|ref|YP_006198388.1| exodeoxyribonuclease III [Clostridium difficile BI1]
gi|423090927|ref|ZP_17079213.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
gi|115250377|emb|CAJ68199.1| Exodeoxyribonuclease [Clostridium difficile 630]
gi|357556042|gb|EHJ37664.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
Length = 250
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV K LD+ K+ DADIFCLQETK E Q +++ P Y YW +
Sbjct: 2 KFISWNVNGIRACVGKGFLDFFKEVDADIFCLQETKLQEGQ----IELDLPGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P KV YG+ + ++ GR + +++ PN+ + LK L+
Sbjct: 58 ERKGYSGTAIFTKKEPLKVMYGINIEEHDKEGRVITLEFEDFYFVTVYTPNSQSELKRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W+ F ++L KLD KPVI+ GD+NV+HK IDL NP N ++AGFT EER+ FS L
Sbjct: 118 YRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D++R+ P + G Y++WSY AR N G +YF
Sbjct: 178 LDSGFIDTYRYFNPDKEGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|427406978|ref|ZP_18897183.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
gi|425707453|gb|EKU70497.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
Length = 250
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ K DAD FCLQETK E Q + P Y+ Y+ S+
Sbjct: 2 RFVSWNVNGLRAALKKGFMESFKALDADAFCLQETKMQEGQ----AILDLPGYEQYFYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+V+P V YG+G +++ GR + + PNA L+ LD
Sbjct: 58 EKKGYSGTAIFTRVQPLSVAYGIGAPEHDDEGRVITMEFEELYLVTVYTPNAKRALERLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L+ L A+KPV++ GDLNV+HK IDL NP +N +AGFT EER F L
Sbjct: 118 YRMAWEDAFRAFLLNLRAKKPVVVCGDLNVAHKEIDLKNPKSNRHNAGFTDEERGKFGEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP R GAYT+WSY+ + AR N G +YF
Sbjct: 178 LAAGFVDTFRALYPDRRGAYTWWSYL-RHARETNAGWRIDYF 218
>gi|357054575|ref|ZP_09115657.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
gi|355384175|gb|EHG31244.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
Length = 251
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K LD+ ++ DA++FC+QE+K E Q +++ P Y YW +
Sbjct: 3 KLISWNVNGLRACVGKGFLDFFREADANVFCIQESKLQEGQ----IELDLPGYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YG+G + ++ GR + + + PN+ GL LD
Sbjct: 59 RKKGYSGTAMFTKEEPMSVSYGIGMEEHDTEGRVITAEFPEYYVVTCYTPNSQDGLARLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KL+ KPV+ GDLNV+HK IDL NP TN ++AGFT EER F+ L
Sbjct: 119 YRMKWEDDFLAYLKKLEKNKPVVFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+ YP G Y++WSY +AR++N G +YF
Sbjct: 179 LAAGFVDTFRYFYPDLEGIYSWWSY-RFSARAKNAGWRIDYF 219
>gi|345022885|ref|ZP_08786498.1| exodeoxyribonuclease III Xth [Ornithinibacillus scapharcae TW25]
Length = 252
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV+K LDY + DADIFC+QETK E Q ++++ Y YW +
Sbjct: 2 KLVSWNVNGLRACVRKGFLDYFNEIDADIFCIQETKLQEGQ----IELELNGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY-GRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V YGL + GR N F I PN+ L LD
Sbjct: 58 EKKGYSGTAVFTKFKPISVKYGLSNEESQVEGRILTLEFENFFLINVYTPNSQRDLARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW+ + EH++ D KPV+L GDLNV+H+ ID+ N +N ++GFT EER+ +
Sbjct: 118 VRLEWEDVLLEHVLAHDRIKPVVLCGDLNVAHREIDIRNYKSNYGNSGFTDEEREKMTRF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+ R+ +P G YT+WSYM KT R RN G +YF
Sbjct: 178 LNAGFIDTLRYFHPDTEGIYTWWSYM-KTVRERNIGWRIDYF 218
>gi|294674336|ref|YP_003574952.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
gi|294473057|gb|ADE82446.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
Length = 249
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 141/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC K D ++ DAD FCLQETK QL + F Y++YW +
Sbjct: 2 KLISWNVNGLRACEGKGFSDTFRELDADFFCLQETKMQAGQL----DLAFEGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK P VTYG+G +++H GR + + + + PN+ GLK LD
Sbjct: 58 EKKGYSGTAIFTKHHPLSVTYGIGIDEHDHEGRVITLEMEDFYLVTCYTPNSQDGLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L LDA+KPVIL GDLNV+H+ IDL NP TN +AGFT +ER+ FS+L
Sbjct: 118 YRMTWENDFRAYLKGLDAKKPVILCGDLNVAHQEIDLKNPKTNRMNAGFTDQEREQFSTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTDSFR+ YP++ Y++WSY + AR +N G +YF
Sbjct: 178 LASGFTDSFRYKYPEQV-TYSWWSYRFQ-ARQKNAGWRIDYF 217
>gi|451343821|ref|ZP_21912887.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
gi|449337396|gb|EMD16558.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
Length = 251
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 142/221 (64%), Gaps = 7/221 (3%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
+ASWNV G+RAC+ K D KK +ADIF LQETK Q + + FPEY ++ S+
Sbjct: 3 LASWNVNGIRACLTKGFEDSFKKINADIFALQETKAQVDQ----IVLDFPEYHAFYNSAV 58
Query: 135 KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GY+GV + TK+KPN V YG+ K ++ GR + +++ PN+ L LD
Sbjct: 59 KKGYSGVAILTKIKPNHVYYGIDIKEHDQEGRVLTLEFDHFYFVGCYTPNSKRELARLDY 118
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
R++W+ F +L KL+ KPVIL GDLNV+H+ IDL NP++N ++AGF+ EER+ + LL
Sbjct: 119 RMKWEDDFLAYLDKLNKTKPVILCGDLNVAHQEIDLKNPSSNHKNAGFSDEEREKMTQLL 178
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
G+ D+FR+ YP +T AY++WSYM K AR RN G +YF
Sbjct: 179 SHGYIDTFRYFYPDQTDAYSWWSYMFK-ARERNAGWRIDYF 218
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 139/223 (62%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWLS 132
K SWNV GLRACVKK ++ ++ DAD FC+QETK E Q+ E PE Y YW
Sbjct: 2 KFISWNVNGLRACVKKGFTEFFEQTDADFFCIQETKLQEGQIDFE-----PEGYFCYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++ K +P V YG+G + ++ GR N + + PN+ + L L
Sbjct: 57 AVKKGYSGTAIFAKKEPLSVQYGIGIEEHDQEGRVITLEYENFYMVTVYTPNSQSELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R++W+ F +L +LD +KPVI+ GDLNV+H+ IDL NP TN +AGFT EER+ F++
Sbjct: 117 SYRMQWEDDFRAYLQQLDEKKPVIMCGDLNVAHQEIDLKNPKTNRHNAGFTDEEREKFTT 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP +T Y++WSY K AR +N G +YF
Sbjct: 177 FLDAGFTDTFRYFYPDKTEIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|967268|gb|AAC47024.1| class II apurinic/apyrimidinic(AP)-endonuclease [Dictyostelium
discoideum]
Length = 361
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 148/229 (64%), Gaps = 7/229 (3%)
Query: 69 EEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKT 128
EE KI SWNVAG ++ + K + ++KE+ D+ CLQETK + + + + K EY
Sbjct: 101 EENQMKIISWNVAGFKSVLSKGFTECVEKENPDVLCLQETKINPSNIKKDQMPKGYEY-- 158
Query: 129 YWLSSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGA- 186
+++ + + G+ G G+ TK KPN +T+G+G K+++ GR V + + +PNAG
Sbjct: 159 HFIEADQKGHHGTGVLTKKKPNAITFGIGIAKHDNEGRVITLEYVQFYIVNTYIPNAGTR 218
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL+ LD R+ EWD F +L KL+A KP+I GDLNV+H IDL NP TN +SAGFTIEE
Sbjct: 219 GLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEE 278
Query: 246 RDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R SFS+ L+KG+ DS+RH P + G+YT+WSY+ RS+N G +YF
Sbjct: 279 RTSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLG-GGRSKNVGWRLDYF 326
>gi|406882429|gb|EKD30227.1| hypothetical protein ACD_78C00115G0011 [uncultured bacterium (gcode
4)]
Length = 254
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 135/222 (60%), Gaps = 3/222 (1%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+R+ + K L+Y++KE D+ LQE K E Q P + ++ Y+ YW ++
Sbjct: 2 KFVSWNVNGVRSVLTKGFLEYLEKESPDVIGLQEVKATEEQFPAGLDLQSLGYQVYWNAA 61
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G +++K+KP V YG G +++ GR F++ PNA L+ L+
Sbjct: 62 ERKGYSGTAVFSKIKPLSVRYGYGMAEHDTEGRIITLEFEEYFFVTVYTPNAKRELERLE 121
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R WD LF ++L +L+AEKPVI+ GDLNV+HK IDL+NP N SAGFT EERD F
Sbjct: 122 YRQLWDSLFFDYLKRLEAEKPVIVSGDLNVAHKDIDLSNPKANRGSAGFTDEERDGFGKF 181
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH YP +T YT+WS AR RN G +YF
Sbjct: 182 LSDGFIDTFRHFYPNKTEEYTWWSNFFH-ARDRNIGWRLDYF 222
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 138/223 (61%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RACV K LDY + DAD+FC+QETK E Q+ E+K ++ YW
Sbjct: 1 MKLVSWNVNGIRACVGKGFLDYFYQIDADVFCIQETKLQEGQISLELK----DHSQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K KP V YG+GT +++ GR + + PN+ L L
Sbjct: 57 AVKKGYSGTAIFSKKKPLSVQYGIGTTEHDSEGRAITLEFEEFYLVNIYTPNSQRDLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W+ E L +LD +KPVIL GD+NV+H IDL NP +N +++GFT EER +
Sbjct: 117 NYRVAWEDYLREFLQELDTKKPVILCGDMNVAHHEIDLKNPKSNMKNSGFTPEERGKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GF D+FRHL P++ YT+WSYM+K R RN G +YF
Sbjct: 177 LLNNGFVDTFRHLNPEKENVYTWWSYMNK-VRERNIGWRIDYF 218
>gi|339521855|gb|AEJ84092.1| DNA-(apurinic or apyrimidinic site) lyase [Capra hircus]
Length = 318
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/274 (41%), Positives = 159/274 (58%), Gaps = 10/274 (3%)
Query: 29 DANTKKTKSGSVENKATGPMNEKLSLNK-----IDYSCNKKNKLGEEPNFKIASWNVAGL 83
DA KT+ + + K NEK ++ + D + K + G+ KI WNV G
Sbjct: 13 DAEEPKTEPEARKRKGGAKKNEKEAVGEGAVLYEDPADQKTSPSGKSATLKICPWNVDGR 72
Query: 84 RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS-SPKAGYAGVG 142
RA +KK+G+D+IK+E DI CLQETKC E +LP E++ YW + S K GY+GVG
Sbjct: 73 RAWIKKKGVDWIKEEAPDILCLQETKCSENKLPVELQELSGLPHQYWSAPSDKEGYSGVG 132
Query: 143 LYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLF 201
L ++ P KV+YG+G + ++ GR + + VPNAG GL L+ R WD+ F
Sbjct: 133 LLSRQCPLKVSYGIGEEEHDQEGRVIVAGYDAFVLVTAYVPNAGRGLVRLEYRQRWDEAF 192
Query: 202 HEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDK-GFTDS 260
+ L L + KP++L GDLNV+H+ D+ NP N ++AGFT +ER F LL TDS
Sbjct: 193 RKFLKGLASRKPLVLCGDLNVAHEESDVRNPKGNKKNAGFTPQERQGFGELLQAVPLTDS 252
Query: 261 FRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 253 FRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 285
>gi|336452587|ref|YP_004607053.1| exodeoxyribonuclease III [Helicobacter bizzozeronii CIII-1]
gi|335332614|emb|CCB79341.1| exodeoxyribonuclease III [Helicobacter bizzozeronii CIII-1]
Length = 251
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 139/221 (62%), Gaps = 7/221 (3%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
+ SWNV GLRAC++K +++++ ADIFC+QETK H P + F +Y ++W S+
Sbjct: 4 LISWNVNGLRACMQKGFKEFLEQSGADIFCVQETKMH----PEQANFIFEDYASFWNSAQ 59
Query: 135 KAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GY+GV +K P TYG+G +++ GR + + + VPN+ GL LD
Sbjct: 60 KKGYSGVLTLSKNAPINTTYGIGVAQHDLEGRVVTCEYADFYLVNVYVPNSQRGLLRLDY 119
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
RL+W++ F L L K V++ GDLNV+HK IDL NP +N +AGF+ EER +FS LL
Sbjct: 120 RLKWEEAFRRFLADLMGHKAVVVCGDLNVAHKEIDLKNPESNHHNAGFSPEERHAFSQLL 179
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
D G D++RH YP + G YT+WSYM++ AR+RN G +YF
Sbjct: 180 DLGLIDTYRHFYPNQQGIYTWWSYMNE-ARARNIGWRIDYF 219
>gi|358068175|ref|ZP_09154645.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
gi|356693719|gb|EHI55390.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
Length = 252
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC++K LD K DADIFC+QE+K E QL ++ P Y YW +
Sbjct: 3 KMISWNVNGIRACIEKGFLDVFKNMDADIFCIQESKVSEGQL----ELDLPGYYDYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++TK KP KVTYG+G + +++ GR + N + + PN+ L L+
Sbjct: 59 QKKGYSGVAMFTKDKPVKVTYGMGIEEHDNEGRIITAEFENYYMLTCYTPNSQRQLTRLE 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +++ L +KP+I GDLNV+ IDL NP TN ++AGFT EER + +
Sbjct: 119 YRMDWEDAFLDYIKNLSQKKPLIYCGDLNVAFADIDLKNPKTNRKNAGFTDEERQKMAVV 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GFTDSFR+LYP G Y++WSYM ARS+N G +YF
Sbjct: 179 QASGFTDSFRYLYPDLEGVYSWWSYMG-GARSKNIGWRIDYF 219
>gi|384177745|ref|YP_005559130.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349596969|gb|AEP93156.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 252
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 145/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA ++K + L Y+K+EDADI CLQETK + Q+ + PE Y YW
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQ-----PEGYHVYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K +P V YG+G + ++ GR N + + PN+ GL+
Sbjct: 56 NYAVKKGYSGTAVFSKQEPLHVIYGIGVEEHDQEGRVITLEFENVYVMTVYTPNSRRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R++W++ ++++L+ +KPVIL GDLNV+H+ IDL NP N +AGF+ +ER++F
Sbjct: 116 RIDYRMQWEEALLSYILELEKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L+ GF DSFRH+YP GAY++WSY + AR RN G +YF
Sbjct: 176 TRFLEAGFVDSFRHVYPDLEGAYSWWSYRA-GARDRNIGWRIDYF 219
>gi|423082270|ref|ZP_17070862.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087662|ref|ZP_17076048.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357543976|gb|EHJ25982.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548596|gb|EHJ30456.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
Length = 250
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV K LD+ K+ DAD+FCLQETK E Q +++ P Y YW +
Sbjct: 2 KFISWNVNGIRACVGKGFLDFFKEVDADVFCLQETKLQEGQ----IELDLPGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P KV YG+ + ++ GR + +++ PN+ + LK L+
Sbjct: 58 ERKGYSGTAIFTKKEPLKVMYGINIEEHDKEGRVITLEFEDFYFVTVYTPNSQSELKRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W+ F ++L KLD KPVI+ GD+NV+HK IDL NP N ++AGFT EER+ FS L
Sbjct: 118 YRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D++R+ P + G Y++WSY AR N G +YF
Sbjct: 178 LDSGFIDTYRYFNPDKEGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|429738347|ref|ZP_19272158.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
gi|429160421|gb|EKY02885.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
Length = 249
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 138/222 (62%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K+ K +AD FCLQETK QL ++F Y++YW +
Sbjct: 2 KFISWNVNGLRACVGKDFEAQFKTLNADFFCLQETKMQAGQL----YLQFDGYQSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YT+ P VTYG+G ++H GR + + + + PN+ LK LD
Sbjct: 58 DKRGYSGTAIYTRHTPLSVTYGIGVDAHDHEGRVITLEMNDFYLVTVYTPNSQDELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L+ LDA KPVI+ GD+NV+H+ ID+ NP TN R+AGFT EER+ + L
Sbjct: 118 YRMTWEDDFKTFLLALDARKPVIVCGDMNVAHQEIDIKNPKTNRRNAGFTDEEREKMTVL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR +YP+ Y++WSY K AR RNTG +YF
Sbjct: 178 LDSGFTDTFRFMYPEEV-TYSWWSYRFK-ARERNTGWRIDYF 217
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ + +ADIFC+QE+K + Q F Y YW S+
Sbjct: 2 KLISWNVNGLRACMNKGFMDFFNEVNADIFCIQESKMQKDQ----GDFSFQGYSEYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV + +K+KP +V Y +G + ++ GR + + + PNA L+ L+
Sbjct: 58 EKKGYSGVVVLSKIKPLQVAYDMGISHHDKEGRIITAEYERFYLVNVYTPNAKRELERLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F + KL KPV++ GDLNV+HK IDL NP TN R+AGFT EER S L
Sbjct: 118 YRMEWEDDFRAFVKKLKKHKPVVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKMSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP GAY++WSYM K AR NTG +YF
Sbjct: 178 LESGFIDTFRHFYPTLEGAYSWWSYMGK-ARENNTGWRIDYF 218
>gi|429735837|ref|ZP_19269760.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156761|gb|EKX99382.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 250
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ K+ +AD FCLQETK E Q + P Y+ Y+ S+
Sbjct: 2 RFVSWNVNGLRAALKKGFMESFKELNADAFCLQETKMQEGQ----AILDLPGYEQYFYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T++KP V+YG+G + +++ GR + + + PN+ GL LD
Sbjct: 58 EKKGYSGTAIFTRLKPLSVSYGIGIEEHDNEGRVITMEFEDVYLVTVYTPNSKNGLLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L+ L A+KPV++ GDLNV+H IDL NP +N R+AGFT EER F+ L
Sbjct: 118 YRMVWEDAFRAFLLDLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP TGAYT+WSY+ + AR N G +YF
Sbjct: 178 LAAGFVDTFRALYPDLTGAYTWWSYL-RHARETNAGWRIDYF 218
>gi|288803025|ref|ZP_06408461.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
gi|288334542|gb|EFC72981.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
Length = 249
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV KE K DAD FCLQETK QL + F Y++YW +
Sbjct: 2 KFISWNVNGLRACVGKEFEQQFKDLDADFFCLQETKMQAGQLD----ISFLGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VTYG+ +++H GR + + + + PN+ GL+ LD
Sbjct: 58 DKKGYSGTAIFTKHKPLSVTYGINIDEHDHEGRVITLEMDDFYLVTVYTPNSQDGLRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KLD +KPVI+ GD+NV+H+ IDL NP TN ++AGFT EER+ + L
Sbjct: 118 YRMKWEDDFQAYLHKLDEKKPVIVCGDMNVAHQEIDLKNPKTNRKNAGFTDEEREKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP++ Y++WSY + AR +NTG +YF
Sbjct: 178 LSNGFIDTFRTLYPEQV-TYSWWSYRFR-AREKNTGWRIDYF 217
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LDY + DADIFC+QETK E Q+ E++ Y YW +
Sbjct: 5 KLISWNVNGLRACVKKGFLDYFNEMDADIFCVQETKLQEGQIDLELE----GYYDYWNYA 60
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V GLG + +++ GR F + PN+ L L+
Sbjct: 61 EKKGYSGTAVFTKEKPISVKMGLGIEEHDNEGRVITLEYDKFFLVNVYTPNSQQKLARLE 120
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ +F +L L+ KPVIL GDLNV+HK IDL NP++N ++AGF+ EER S L
Sbjct: 121 YRMSWEDVFRNYLKDLEKNKPVILCGDLNVAHKEIDLKNPSSNRKNAGFSDEERSKMSEL 180
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD+FR+ YP G Y++WSY AR+ N G +YF
Sbjct: 181 LNSGFTDTFRYFYPDIEGVYSWWSYRF-NARANNAGWRIDYF 221
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 146/223 (65%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K + Q + + EY TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQDGQ----IDLNLEEYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 118 DYRMKWEDDFRVYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPNQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|167767320|ref|ZP_02439373.1| hypothetical protein CLOSS21_01839 [Clostridium sp. SS2/1]
gi|429761671|ref|ZP_19294088.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
gi|167711295|gb|EDS21874.1| exodeoxyribonuclease III [Clostridium sp. SS2/1]
gi|291559374|emb|CBL38174.1| exodeoxyribonuclease III [butyrate-producing bacterium SSC/2]
gi|429183247|gb|EKY24313.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
Length = 250
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACVKK LD+ + DADIFC+QE+K E QL + P Y YW +
Sbjct: 2 KFISWNVNGIRACVKKGFLDFFNETDADIFCIQESKMQEGQL----DLNLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G G++TK +P V YGLG + ++ GR + ++I PN+ + L L
Sbjct: 58 VKKGYSGTGIFTKEEPISVFYGLGIEEHDQEGRVITLEFKDYYFITVYTPNSQSELARLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F +L KL+ +KPVI GDLNV+ + IDL NP TN ++AGFT EER+ ++
Sbjct: 118 YRMKWEEDFLAYLKKLEEKKPVIFCGDLNVAVEEIDLKNPKTNRKNAGFTDEEREKMRTI 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+LYP +TG Y++WSY AR N G +YF
Sbjct: 178 LSNGFIDTFRYLYPDQTGIYSWWSYRF-NARKNNAGWRIDYF 218
>gi|295110263|emb|CBL24216.1| exodeoxyribonuclease III [Ruminococcus obeum A2-162]
Length = 253
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+ K D K+ +AD+FCLQETKC + Q V+++ P Y YW +
Sbjct: 2 KLISWNVNGIRACITKGFEDRFKELNADVFCLQETKCQQGQ----VELELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P V G+G + ++ GR +++ PN+ + L+ L+
Sbjct: 58 NRRGYSGTAVFTKKEPLSVVNGIGIEAHDKEGRVITLEFEEFYFVTVYTPNSQSELRRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW++ F +L+KL +KPVI GD+NV+H+ IDL NP TN ++AGFT EER FS +
Sbjct: 118 YRMEWERDFLAYLLKLQEKKPVICCGDMNVAHQEIDLKNPKTNRKNAGFTDEERACFSRM 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + G Y++WSY K AR +N G +YF
Sbjct: 178 LESGFVDTFRYFYPDKEGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|423378475|ref|ZP_17355759.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
gi|423448243|ref|ZP_17425122.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|423540784|ref|ZP_17517175.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|423547021|ref|ZP_17523379.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|423623188|ref|ZP_17598966.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|401128837|gb|EJQ36520.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|401171972|gb|EJQ79193.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|401178742|gb|EJQ85915.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|401258965|gb|EJR65143.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|401635242|gb|EJS52998.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
Length = 252
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 145/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFTKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R+EW+ F ++ +LD +KPV+ GDLNV+HK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMEWEDDFRTYIKQLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L++GF D++RHLYP + GAY++WSY AR++N G +YF
Sbjct: 176 TRILEEGFVDTYRHLYPNQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|239624599|ref|ZP_04667630.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520985|gb|EEQ60851.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 251
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K LD+ K+ DAD+FC+QE+K E Q + + P Y YW +
Sbjct: 3 KFISWNVNGLRACVGKGFLDFFKEIDADVFCIQESKLQEGQ----IDLDLPGYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+ +P V+YG+G + ++ GR + + + + PN+ GL LD
Sbjct: 59 LKKGYSGTAMFTREEPLSVSYGIGMEEHDTEGRVITAEFPDYYVVTCYTPNSQDGLARLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L L+ +KPV+ GDLNV+HK IDL NP TN ++AGFT EER F+ L
Sbjct: 119 YRMKWEDDFLAYLKGLEKKKPVVFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+ YP G Y++WSY +AR++N G +YF
Sbjct: 179 LSAGFIDTFRYFYPDAEGIYSWWSY-RFSARAKNAGWRIDYF 219
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 145/223 (65%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA + K G L+Y+++ +ADIFCLQE K E Q+ V+ +Y TYW
Sbjct: 2 KFISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQEGQIDLNVE----DYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + I PNA GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRVITLEFEGFYIITLYTPNAKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 118 DYRMKWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|116493341|ref|YP_805076.1| exonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|116103491|gb|ABJ68634.1| Exonuclease III [Pediococcus pentosaceus ATCC 25745]
Length = 251
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VK LD K+ DADIFC+QETK E Q ++++ P Y YW +
Sbjct: 2 KLISWNVNGLRAAVKHGFLDVFKELDADIFCIQETKLQEGQ----IELELPHYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V YGLG + ++ GR + I PN+ LK L+
Sbjct: 58 EKKGYSGTAIFTKKKPLAVRYGLGIEEHDQEGRIITLEFEKFYVITCYTPNSQPKLKRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WD F ++ +L+ KPVI GDLNV+H+ IDL N TN ++AGFT EER+ F+ L
Sbjct: 118 YRMAWDDAFRAYIDQLNQHKPVIFCGDLNVAHQEIDLKNDKTNHKNAGFTDEERNKFTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD++R+ YP + G Y++WSY AR+ N G +YF
Sbjct: 178 LNSGFTDTYRYFYPSKEGVYSWWSYRF-NARANNAGWRIDYF 218
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423628823|ref|ZP_17604572.1| exodeoxyribonuclease [Bacillus cereus VD154]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268368|gb|EJR74416.1| exodeoxyribonuclease [Bacillus cereus VD154]
Length = 252
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 144/223 (64%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ ADIFCLQE K E Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ FS
Sbjct: 118 DYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPNQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 138/222 (62%), Gaps = 6/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RACV+K LDY ++ +AD+FC+QETK E Q + ++ Y YW
Sbjct: 1 MKLISWNVNGIRACVRKGFLDYFQEVNADVFCIQETKLQEGQ----IDLQLEGYYQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TK KP V+YG+ ++E GR + + PN+ L L+
Sbjct: 57 AVKKGYSGTAVFTKQKPLSVSYGVDKESEDEGRIITLEFEQCYVVNVYTPNSKRDLARLE 116
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
+RL+W+ +L KL++ K VIL GDLNV+H IDL NP N ++GFTIEER ++L
Sbjct: 117 ERLQWEDDLLVYLNKLNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTL 176
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+LYP + AYT+WSYM+K R RN G +YF
Sbjct: 177 LASGFLDTFRYLYPNQEEAYTWWSYMNK-VRERNIGWRIDYF 217
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y DADIFCLQETK Q + + P YK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFDSVDADIFCLQETKLQAGQ----IDLDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YGLG + ++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKKEPLSVQYGLGIEEHDTEGRVITLEFEKFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ ++ KLD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER F++
Sbjct: 118 YRMTFEDAILAYVKKLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+ YP AY++WSY AR+RN G +YF
Sbjct: 178 LEAGFVDSFRYFYPDLEDAYSWWSY-RMNARARNIGWRIDYF 218
>gi|257413807|ref|ZP_04744296.2| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|257202214|gb|EEV00499.1| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|291538795|emb|CBL11906.1| exodeoxyribonuclease III [Roseburia intestinalis XB6B4]
Length = 256
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 140/226 (61%), Gaps = 7/226 (3%)
Query: 70 EPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTY 129
E K+ SWNV GLRAC++K LD+ + DADIFC+QE+K E Q + + P Y +Y
Sbjct: 2 ENTMKLISWNVNGLRACIQKGFLDFFHETDADIFCIQESKLQEGQ----IDLPLPGYFSY 57
Query: 130 WLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
W + K GY+G ++TK +P VTYG+G + ++ GR + + + PN+ L
Sbjct: 58 WNYAKKKGYSGTAIFTKKEPLNVTYGIGIEEHDKEGRVITLEYPDFYMVTCYTPNSQNEL 117
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
L R++W+ F +L +LD KPVIL GDLNV+H+ IDL NP TN ++AGF+ EER+
Sbjct: 118 ARLPYRMQWEDDFRAYLKRLDGSKPVILCGDLNVAHEEIDLKNPKTNRKNAGFSDEEREK 177
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ LLD GFTD+FR+ YP Y++WSY + AR +N G +YF
Sbjct: 178 MTKLLDAGFTDTFRYFYPDTEQIYSWWSYRFR-AREKNAGWRIDYF 222
>gi|423076274|ref|ZP_17064987.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
gi|361852634|gb|EHL04857.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
Length = 250
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ ++E ADIFCLQETK E Q+P +++ Y YW +
Sbjct: 2 KLISWNVNGLRACLNKGFMDFFQQEQADIFCLQETKLQEEQIPFQLE----GYHAYWNFA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K +P V+YG+G + ++ GR + + PN+ L LD
Sbjct: 58 QKKGYSGTAVFAKQEPLSVSYGIGQEEHDQEGRVITLEFDTFYLVTVYTPNSQRDLARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L L+ KPVIL GDLNV+H IDL NP TN ++AGFT EER FS L
Sbjct: 118 YRMIWEAEFLGYLKNLEKSKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEERAKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH P + AYT+WSYM AR+ N G +YF
Sbjct: 178 LKNGFIDTFRHFNPDKKEAYTWWSYMF-NARANNAGWRIDYF 218
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 144/223 (64%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K E L+Y+++ ADIFCLQE K E Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGEFLEYLEESSADIFCLQEIKLQEGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGL + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLDIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ FSS
Sbjct: 118 DYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSS 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 139/223 (62%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRAC K D ++ DAD FCLQETK QL ++F Y++YW
Sbjct: 2 LKLISWNVNGLRACYDKGFTDIFRQLDADFFCLQETKMQAGQLD----LQFDGYQSYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T+++P V+YG+ T+++ GR + + F + PN+ GLK L
Sbjct: 58 AEKKGYSGTAVFTRLQPISVSYGMDRTEHDREGRIITLEMEDFFLVNVYTPNSQEGLKRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W+ F L +L +KPVI+ GDLNV+H+ IDL NP TN ++AGFT EER F+
Sbjct: 118 EYRMTWEDDFLHFLKQLKTQKPVIVCGDLNVAHQEIDLKNPKTNRKNAGFTDEERYKFTQ 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FR+ YP + Y++WSY K AR +N G +YF
Sbjct: 178 LLSAGFTDTFRYFYPNQKDIYSWWSYRFK-AREKNAGWRIDYF 219
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 137/222 (61%), Gaps = 6/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RACV+K LDY ++ AD+FC+QETK E Q + ++ Y YW
Sbjct: 1 MKLISWNVNGIRACVRKGFLDYFQEVTADVFCIQETKLQEGQ----IDLQLEGYYQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TK KP V++G+ + E GR + + PN+ L L+
Sbjct: 57 AVKKGYSGTAVFTKQKPLSVSFGVDKELEDEGRIITLEFEQCYVVNVYTPNSKRDLARLE 116
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
+RL+W+ +L KL++ K VIL GDLNV+H IDL NP N ++GFTIEER ++L
Sbjct: 117 ERLQWEDDLLVYLKKLNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTL 176
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+LYP + GAYT+WSYM+K R RN G +YF
Sbjct: 177 LASGFLDTFRYLYPNQEGAYTWWSYMNKV-RERNIGWRIDYF 217
>gi|345881123|ref|ZP_08832651.1| exodeoxyribonuclease [Prevotella oulorum F0390]
gi|343920840|gb|EGV31568.1| exodeoxyribonuclease [Prevotella oulorum F0390]
Length = 250
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 138/222 (62%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K+ K DAD FCLQETK QL ++FP Y+++W +
Sbjct: 2 KFISWNVNGLRACVGKDFEQQFKALDADFFCLQETKMQAGQL----DLQFPGYQSFWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +Y K P V+YG+G +++H GR + F + PN+ L+ LD
Sbjct: 58 EKKGYSGTAIYAKQAPLAVSYGIGIDEHDHEGRVITLEYESFFLVTVYTPNSQDELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L +LD +KPVI+ GD+NV+H+ IDL NP TN R+AGFT EER + L
Sbjct: 118 YRMQWEDDFQAYLHRLDEQKPVIVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERAKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP++ Y++WSY + AR +NTG +YF
Sbjct: 178 LGHGFIDTFRTLYPEQQ-TYSWWSYRFR-AREKNTGWRIDYF 217
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|423585849|ref|ZP_17561936.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|423641177|ref|ZP_17616795.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|423649605|ref|ZP_17625175.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|423656600|ref|ZP_17631899.1| exodeoxyribonuclease [Bacillus cereus VD200]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|401233195|gb|EJR39691.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|401280238|gb|EJR86160.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|401282885|gb|EJR88782.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|401290341|gb|EJR96035.1| exodeoxyribonuclease [Bacillus cereus VD200]
Length = 252
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 143/223 (64%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ ADIFCLQE K E Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N + GF+ EER+ FS
Sbjct: 118 DYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRENPGFSDEEREKFSC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPNQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|355673738|ref|ZP_09059213.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
gi|354814451|gb|EHE99051.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
Length = 251
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K LD+ + DAD+FC+QE+K E Q +++ P Y YW +
Sbjct: 3 KLISWNVNGLRACVGKGFLDFFQAVDADVFCIQESKLQEGQ----IELDLPGYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+ +P V YG+G + ++ GR + + + PN+ GL LD
Sbjct: 59 RKKGYSGTAVFTREEPISVAYGIGMEEHDTEGRVITAEFPEYYVVTCYTPNSQDGLARLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L L+ KPVI GDLNV+HK IDL NP TN ++AGFT EER F+ L
Sbjct: 119 YRMKWEDDFLSYLKGLEKNKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+ YP G Y++WSY +AR++N G +YF
Sbjct: 179 LSAGFIDTFRYFYPDMEGIYSWWSY-RFSARAKNAGWRIDYF 219
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ ++E ADIFCLQETK E Q+P +++ Y YW +
Sbjct: 2 KLISWNVNGLRACLNKGFMDFFQQEQADIFCLQETKLQEEQIPFQLE----GYHAYWNFA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K +P V+YG+G + ++ GR + + PN+ L LD
Sbjct: 58 QKKGYSGTAVFAKKEPLSVSYGIGQEEHDQEGRVITLEFDTFYLVTVYTPNSQRDLARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L L+ KPVIL GDLNV+H IDL NP TN ++AGFT EER FS L
Sbjct: 118 YRMIWEAEFLGYLKNLEKSKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEERAKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH P + AYT+WSYM AR+ N G +YF
Sbjct: 178 LKNGFIDTFRHFNPDKKEAYTWWSYMF-NARANNAGWRIDYF 218
>gi|323344424|ref|ZP_08084649.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
gi|323094551|gb|EFZ37127.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
Length = 249
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 138/222 (62%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K+ K DAD FCLQETK QL + F Y++YW +
Sbjct: 2 KLISWNVNGLRACVGKDFETSFKSLDADFFCLQETKMQAGQL----DLAFNGYQSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK P VTYG+G +++H GR N F + PN+ L+ L+
Sbjct: 58 DKKGYSGTAIFTKQTPLNVTYGMGIDEHDHEGRVITLETENFFLVTVYTPNSQDELRRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L+ LDA KPVI+ GD+NV+H+ ID+ NP TN R+AGFT EER+ + L
Sbjct: 118 YRMRWEDDFKAYLLALDARKPVIVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP++ Y++WSY + AR RNTG +YF
Sbjct: 178 LAGGFIDTFRTLYPEQV-TYSWWSYRFR-ARERNTGWRIDYF 217
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|384187741|ref|YP_005573637.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676060|ref|YP_006928431.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452200118|ref|YP_007480199.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175189|gb|AFV19494.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452105511|gb|AGG02451.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 252
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 144/223 (64%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ ADIFCLQE K E Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 118 DYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFVDTYRYLYPNQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 134/223 (60%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEGL-DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV G RA +K + +++K AD FC+QETK +Q V + +Y YW
Sbjct: 2 KFISWNVNGFRALQRKMDVNEWLKNTGADAFCIQETKLQRSQ----VDFQTADYLQYWYD 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G + TK KP VTYG+G +H GR + + + PNA LK L
Sbjct: 58 AEKKGYSGTAIITKNKPLNVTYGIGVDEFDHEGRVITLEYEDYYLMTVYTPNAQRDLKRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
RL+W + F + +LD KPV+ GDLNV+H+ IDL NP +N ++AGFT EER FS
Sbjct: 118 GFRLKWGQAFTNFIDRLDRRKPVVFCGDLNVAHQAIDLKNPKSNMKNAGFTAEERQDFSE 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF DSFR+L+P R GAY++WSYM AR+RN G +YF
Sbjct: 178 LLDTGFIDSFRYLHPDREGAYSWWSYMG-NARARNVGWRIDYF 219
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 143/223 (64%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ ADIFCLQE K E Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N + GF+ EER+ FS
Sbjct: 118 DYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRENPGFSDEEREKFSC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPNQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|335430178|ref|ZP_08557073.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
gi|334888594|gb|EGM26891.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
Length = 251
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+KK ++ + +AD+F +QETK E Q F Y +W +
Sbjct: 2 KLVSWNVNGLRACMKKGFKEFFNEMNADLFAIQETKMQEEQKT----FDFEGYHEFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +Y+K KP V YG+ G+K GR N F++ VPN+ L LD
Sbjct: 58 DKKGYSGTLIYSKQKPLNVVYGIDGSKYNDEGRIITLEFKNFFFVTAYVPNSQRSLARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+E++ F +L KLD+ KPVI+ GDLNV+H+ IDL NP N ++AGFTIEER + SL
Sbjct: 118 YRMEFEDDFRAYLKKLDSLKPVIMCGDLNVAHREIDLTNPKNNEKNAGFTIEERRKYQSL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD+GFTDS+R+L+P++ Y++WSYM AR RN G +YF
Sbjct: 178 LDEGFTDSYRYLHPEKV-EYSWWSYMF-NARKRNIGWRIDYF 217
>gi|291545257|emb|CBL18366.1| exodeoxyribonuclease III [Ruminococcus champanellensis 18P13]
Length = 256
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 135/223 (60%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC +K + +EDAD FC+QETK Q ++++ P Y YW +
Sbjct: 2 KLISWNVNGLRACREKGFEAFFAQEDADFFCIQETKLQAGQ----IQLELPGYNQYWHYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVT--YGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G ++TK P V +GL N GR + + + VPN+ L L
Sbjct: 58 DKKGYSGTAVFTKHIPLSVQRDFGLPAHNGE-GRVLTLEYPDFYLVNAYVPNSKRELLRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+EW+ ++L+ LDA KPVI GDLNV+H+ IDL NP +N R+AGFT EER S+
Sbjct: 117 DYRMEWEDALRQYLLGLDARKPVIYCGDLNVAHREIDLKNPKSNRRNAGFTDEERGRLST 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GFTD+FR LYP GAYT+WSYM AR +N G +YF
Sbjct: 177 LLDSGFTDTFRLLYPDTAGAYTWWSYMFH-AREKNAGWRIDYF 218
>gi|422339748|ref|ZP_16420705.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370591|gb|EHG17971.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 253
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK E QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSEGQLDLELK----GYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRA-NARKNNAGWRIDYF 218
>gi|373107112|ref|ZP_09521412.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
gi|371652051|gb|EHO17477.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
Length = 254
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA K D + DADIFC+QE+K E Q +++ P Y YW +
Sbjct: 5 KMISWNVNGLRAAAGKTFFDAFHELDADIFCIQESKLQEGQ----IELDLPGYYDYWNYA 60
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++TK KP V+YGLG +++ GR + + + PN+ LK LD
Sbjct: 61 EKKGYSGVAMFTKEKPVNVSYGLGIPEHDKEGRVITLEFPDYYVLTCYTPNSQNELKRLD 120
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F ++ LD +KP+I GDLNV+H+ IDL NP+TN R+AGFT EER+ + +
Sbjct: 121 YRMEWEDAFFAYIKGLDQKKPLIYCGDLNVAHEEIDLKNPSTNRRNAGFTDEEREKMTRV 180
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR+L+P+ AY++WSY K AR RN G +YF
Sbjct: 181 LTNGFVDSFRYLHPEEKDAYSWWSYRMK-ARERNVGWRIDYF 221
>gi|423418359|ref|ZP_17395448.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
gi|401106632|gb|EJQ14593.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
Length = 252
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 145/225 (64%), Gaps = 12/225 (5%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQ--LPPEVKMKFPEYKTYW 130
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q L PE EY TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE------EYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG + ++ GR + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFTKKEPLSVTYGLGIEEHDQEGRVITLEFEDFHMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R++W+ F ++ +LD +KPVI GDLNVSHK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMKWEDDFRAYIKRLDKKKPVIFCGDLNVSHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L++GF D++R LYP++ GAY++WSY AR++N G +YF
Sbjct: 176 TKILEEGFVDTYRFLYPEQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 135/226 (59%), Gaps = 10/226 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RACVKK +DY DADIFC+QETK E Q + + P Y YW
Sbjct: 1 MKLVSWNVNGIRACVKKGFMDYFNDMDADIFCIQETKLQEGQ----IDLDTPGYYQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN----EHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
+ K GY+G ++TK+KP +V YGL K E GR + F + PN+ L
Sbjct: 57 AIKKGYSGTAVFTKMKPLQVRYGLDEKKAEECEPEGRILTLEYEDFFLVNVYTPNSQRDL 116
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
L RL+W+ F ++ LD +K VI+ GDLNV+H IDL NP +N ++GFT EER
Sbjct: 117 ARLPFRLDWEDRFLAYIKMLDQQKSVIVCGDLNVAHAEIDLKNPKSNRNNSGFTEEERGK 176
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ LL +GF+D+FRH YP+ T YT+WSYM+K R RN G +YF
Sbjct: 177 MTRLLGEGFSDTFRHFYPELTDKYTWWSYMNK-VRERNIGWRIDYF 221
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 141/223 (63%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETK-CHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRAC+ K +D+ + +ADIFC+QE+K C E + + F YK YW S
Sbjct: 2 KLISWNVNGLRACMNKGFMDFFNEVNADIFCIQESKMCKE-----QAQFHFENYKEYWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+GV + +K +P V Y +G T ++ GR + + + + PN+ L+ L
Sbjct: 57 AEKKGYSGVVILSKTQPINVAYDMGITYHDKEGRIITAEYPHFYLVNVYTPNSKRELERL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F + L+ K VI+ GDLNV+H+ IDL NP TN R+AGFT EER+ S+
Sbjct: 117 DYRMKWEDDFRAFVKNLENHKSVIICGDLNVAHQEIDLKNPKTNRRNAGFTDEERNKMSA 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF D+FR+ YP TGAY++WSYM K AR NTG +YF
Sbjct: 177 LLDAGFIDTFRYFYPTLTGAYSWWSYMGK-ARENNTGWRIDYF 218
>gi|229157316|ref|ZP_04285394.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
gi|228626043|gb|EEK82792.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
Length = 252
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 145/223 (65%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K + Q + + EY TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQDGQ----IDLNLEEYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPV+ GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 118 DYRMKWEDDFRVYIKRLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR +N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPNQEGAYSWWSY-RMGARVKNIGWRLDYF 219
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|423441531|ref|ZP_17418437.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|423464605|ref|ZP_17441373.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|423533947|ref|ZP_17510365.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|402418192|gb|EJV50492.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|402420872|gb|EJV53143.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|402464166|gb|EJV95866.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
Length = 252
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 144/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++ K +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFMKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R+EW+ F ++ +LD +KPV+ GDLNV+HK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMEWEDDFRTYIKQLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L++GF D++RHLYP + GAY++WSY AR++N G +YF
Sbjct: 176 TRILEEGFVDTYRHLYPNQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|160933576|ref|ZP_02080964.1| hypothetical protein CLOLEP_02430 [Clostridium leptum DSM 753]
gi|156867453|gb|EDO60825.1| exodeoxyribonuclease III [Clostridium leptum DSM 753]
Length = 261
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 147/234 (62%), Gaps = 9/234 (3%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
N +++ G+ P + SWNV GLRAC+ K ++ ++ DADIFCLQETK + Q V+M
Sbjct: 2 NYEHEKGDYP-MRFISWNVNGLRACLTKGFPEFFQQIDADIFCLQETKLQQGQ----VEM 56
Query: 122 KFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKN 180
P Y+ YW S+ K GY+G +++K +P V+YGLG + ++ GR +
Sbjct: 57 VLPGYRQYWNSAVKKGYSGTAVFSKKEPLSVSYGLGIEEHDQEGRVITLEFPAFYLTTVY 116
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
PN+ GLK L R+EW+ F ++L LD++KPV++ GD+NV+H+ IDL NP TN ++AG
Sbjct: 117 TPNSQEGLKRLSYRMEWEDAFRDYLKGLDSKKPVVVCGDMNVAHQEIDLKNPKTNRKNAG 176
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER+ FS LL GF DS+R LYP++ Y++WSY AR N G +YF
Sbjct: 177 FTDEERERFSQLLAAGFIDSYRSLYPEKI-EYSWWSYRF-NARKNNAGWRIDYF 228
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
Length = 253
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K LD+ ++ DAD+FC+QETK + Q ++ Y+ +W S+
Sbjct: 2 KLISWNVNGLRACLNKGFLDFFQEADADVFCVQETKMQQGQ----AELALEGYEQFWCSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T++ P V YG+G + + GR I PNA GL +D
Sbjct: 58 EKKGYSGTAVFTRIPPVSVAYGIGIPEFDTEGRVITVEFEKFTLINVYTPNAQRGLTRID 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L++L KPV++ GDLNV+H IDL N TN +AGF+ EER + L
Sbjct: 118 FRMQWEDAFRVYLLRLQESKPVVVCGDLNVAHNEIDLKNYKTNRGNAGFSDEERGKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L G TDSFR+LYP++TG YT+WSYM AR+ N G +YF
Sbjct: 178 LQSGLTDSFRYLYPEKTGCYTWWSYMFN-ARANNAGWRIDYF 218
>gi|422932904|ref|ZP_16965829.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891952|gb|EGQ80860.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 253
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR NTG +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNTGWRIDYF 218
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 272
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA + K L DAD+FCLQETK E Q ++ P+Y YW +
Sbjct: 4 KLISWNVNGLRAVLGKTFLSDFHALDADVFCLQETKLQEGQ----AELSLPDYHQYWNYA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G L++K +P V+YG+G +++ GR ++ + + + VPN+ L+ L
Sbjct: 60 EKKGYSGTALFSKEEPLSVSYGIGIPEHDREGRVISAEFPDCYILTVYVPNSQNELQRLS 119
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F E+++ L+ +KPVI GDLNV+H+ IDL NP +N +AGFT +ER FS L
Sbjct: 120 YRMEWEDAFREYILSLEEKKPVIYCGDLNVAHQEIDLKNPASNHHNAGFTDDERAKFSRL 179
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD G+ DSFR L+P+ AY++WSY +K AR RN G +YF
Sbjct: 180 LDCGYLDSFRFLHPEERDAYSWWSYRTK-ARERNVGWRIDYF 220
>gi|373461425|ref|ZP_09553165.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
gi|371952383|gb|EHO70222.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
Length = 251
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 138/222 (62%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K+ + +AD FCLQETK QL ++FP Y ++W +
Sbjct: 3 KFVSWNVNGLRACVSKDFAQTFETLNADFFCLQETKMQAGQL----DLQFPGYTSFWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +Y + +P V YG+G +++H GR + + + PNA GL+ LD
Sbjct: 59 DKKGYSGTAIYARKEPLSVAYGIGIDEHDHEGRVITLEYEDFYLVNVYTPNAQDGLRRLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +LDA KPVI+ GD+NV+H+ IDL NP TN R+AGFT EER + L
Sbjct: 119 YRMTWEDDFQAYLHRLDARKPVIVCGDMNVAHEEIDLKNPKTNHRNAGFTDEERAKMTQL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR+LYP+ Y++WSY + AR +NTG +YF
Sbjct: 179 LGNGFTDTFRNLYPEAI-KYSWWSYRFR-AREKNTGWRIDYF 218
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RAC+ K D ++ DADIFCLQETKC + Q V+++ P Y YW +
Sbjct: 2 KCISWNVNGIRACITKGFEDRFRELDADIFCLQETKCQQGQ----VELELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P V G+G + ++ GR +++ PN+ + L+ L+
Sbjct: 58 NRRGYSGTAVFTKKEPISVKNGIGIEEHDKEGRVITLEFKEFYFVTVYTPNSQSELRRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW++ F +L+KL KPVI GDLNV+H+ IDL NP TN ++AGFT EER F+ +
Sbjct: 118 YRMEWERDFLAYLLKLQESKPVICCGDLNVAHEEIDLKNPKTNRKNAGFTDEERACFTKV 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + G Y++WSY K AR +N G +YF
Sbjct: 178 LESGFIDTFRYFYPDKEGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|288927024|ref|ZP_06420917.1| exodeoxyribonuclease III [Prevotella buccae D17]
gi|288336198|gb|EFC74586.1| exodeoxyribonuclease III [Prevotella buccae D17]
Length = 249
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 140/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRACV K + K DAD FCLQETK E QL ++F Y +YW +
Sbjct: 2 RFISWNVNGLRACVSKGFEESFKALDADFFCLQETKMQEGQL----NLQFEGYDSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YTK KP VTYGLG + ++H GR + + + I PN+ L+ LD
Sbjct: 58 EKKGYSGTAIYTKHKPLNVTYGLGIEEHDHEGRVITLEMEDFYLITVYTPNSQDELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +++ LDA+KPVI+ GDLNV+H+ IDL NP TN R+AGFT EER+ +
Sbjct: 118 YRMTWEDDFLKYIQGLDAKKPVIVCGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTIT 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTDSFR+ YP++ Y++WSY AR +N G +YF
Sbjct: 178 LNSGFTDSFRYKYPEQV-TYSWWSYRFH-AREKNAGWRIDYF 217
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + I PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKEEPLSVSYGLGIEEHDKEGRVITLEFEKFYMITVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP AY++WSY + AR NTG +YF
Sbjct: 178 LESGFIDTFRYFYPDLEHAYSWWSYRA-NARKNNTGWRIDYF 218
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
Length = 251
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRAC+KK LDY ++ +I LQE K E QL E++ Y TY+ +
Sbjct: 3 KYISWNVNGLRACIKKGFLDYFNEQKPNIIGLQEIKMSEGQLDLELEG----YYTYYNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T V+P V+YG+G + ++ GR + + +++ PN+ L+ LD
Sbjct: 59 EKKGYSGTAIFTDVEPISVSYGIGIEEHDKEGRVITAEFEDYYFVTVYTPNSKNELERLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L KL+ +KPVI+ GDLNV+HK IDL NP +NTRSAGFTIEER+ F+ L
Sbjct: 119 YRMIWEDEFRSYLKKLEEKKPVIVCGDLNVAHKEIDLKNPKSNTRSAGFTIEERNKFTEL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ GF D+FR+ YP + AY++WSY AR NTG +YF
Sbjct: 179 IENGFIDTFRYFYPDKIHAYSWWSYRG-NARKNNTGWRIDYF 219
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK+ + DAD FC+QETK E QL + P Y Y+ +
Sbjct: 2 KFISWNVNGLRAVVKKDFEAEFEALDADFFCIQETKMQENQL----SLDLPNYHQYYNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G G++TK +P V YG+ +H GR + F + PN+G LK LD
Sbjct: 58 EQKGYSGTGIFTKHEPLSVHYGINVPELDHEGRTITLEYKSFFLVTCYTPNSGHELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++WD F +L+KL+ KPVI+ GDLNV+H IDL +PT+N +AGFT EER++F++L
Sbjct: 118 FRMQWDPAFQSYLLKLNKRKPVIICGDLNVAHSEIDLKSPTSNHHNAGFTDEERENFTTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D++R+ YP + Y++WSY +K AR N+G +YF
Sbjct: 178 LDSGFIDTYRYFYPDKKEKYSWWSYRTK-AREVNSGWRIDYF 218
>gi|423518373|ref|ZP_17494854.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
gi|401161100|gb|EJQ68468.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
Length = 252
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 145/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y++K +ADIFCLQE K Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEKSNADIFCLQEIKLQSGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFTKKEPISVTYGLGIEEHDQEGRVITLEFDDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R+EW+ F ++ +LD +KPV+ GDLNV+HK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RVDYRMEWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TRILEEGFVDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRAC+KK LDY + +AD FCLQE K E QL E++ Y+T++ +
Sbjct: 2 RFISWNVNGLRACIKKGFLDYFNEINADFFCLQEIKMSEGQLDLELE----GYETFYNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK KP V YG+G + +++ GR + F + PN+ L LD
Sbjct: 58 QRKGYSGTAIFTKFKPLSVKYGMGMEEHDNEGRLITLEYDDFFLVTCYTPNSKQELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L+ L+ K VI+ GDLNV+HK IDL NP TN ++AGFT EER+ S L
Sbjct: 118 YRMVWEDAFRNYLLDLNKTKSVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKMSIL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP + Y++WSY K +R RNTG +YF
Sbjct: 178 LDSGFTDTFRYFYPDKENEYSWWSYFGK-SRERNTGWRIDYF 218
>gi|302388430|ref|YP_003824252.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
gi|302199058|gb|ADL06629.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
Length = 251
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV+K LDY K+ DAD+FC+QE+K E Q + + P Y YW +
Sbjct: 3 KMISWNVNGLRACVEKGFLDYFKEMDADVFCIQESKLQEGQ----IDLTLPGYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G L+TK KP V YG+ +++ GR + + + PN+ L L
Sbjct: 59 EKKGYSGTALFTKEKPLSVAYGINAEEHDREGRVIAAEYPEYYVVTCYTPNSQNELARLP 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W+ +L KL+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER+ F+ L
Sbjct: 119 YRLTWEDAVLAYLKKLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFTVL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D++R+ YP++ G Y++WSY +AR +N G +YF
Sbjct: 179 LESGFIDTYRYFYPEQEGIYSWWSYRF-SARKKNAGWRIDYF 219
>gi|153853826|ref|ZP_01995182.1| hypothetical protein DORLON_01173 [Dorea longicatena DSM 13814]
gi|149753576|gb|EDM63507.1| exodeoxyribonuclease III [Dorea longicatena DSM 13814]
Length = 250
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RAC +K +D + DADIFC+QE+K QL ++ P Y YW +
Sbjct: 2 KFISWNVNGIRACAQKGFMDIFNEADADIFCIQESKMQAGQL----ELDTPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P V+YGLG + ++ GR + ++I PN+ + L LD
Sbjct: 58 ERKGYSGTAIFTKEEPLSVSYGLGIEEHDKEGRVITLEFEDFYFITVYTPNSQSELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L KL+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER F++L
Sbjct: 118 YRMRWEDAFLAYLKKLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTNL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP G Y++WSY +AR +N G +YF
Sbjct: 178 LNAGFIDTFRYFYPDAEGIYSWWSYRF-SARKKNAGWRIDYF 218
>gi|423395948|ref|ZP_17373149.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|423406828|ref|ZP_17383977.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
gi|401653690|gb|EJS71234.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|401660118|gb|EJS77601.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
Length = 252
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 143/223 (64%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQGGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P V YGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFTKKEPLSVAYGLGIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD EKPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 118 DYRMKWEDDFRAYIKRLDEEKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 VLEEGFVDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|255655350|ref|ZP_05400759.1| putative exodeoxyribonuclease [Clostridium difficile QCD-23m63]
gi|296451338|ref|ZP_06893076.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
gi|296259754|gb|EFH06611.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
Length = 250
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV G+RAC K LD+ K+ DAD+FCLQETK E Q +++ P Y YW +
Sbjct: 2 RFISWNVNGIRACAGKGFLDFFKEVDADVFCLQETKLQEGQ----IELDLPGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P KV YG+ + ++ GR + +++ PN+ + LK L+
Sbjct: 58 ERKGYSGTAIFTKKEPLKVMYGINIEEHDKEGRVITLEFEDFYFVTVYTPNSQSELKRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W+ F ++L KLD KPVI+ GD+NV+HK IDL NP N ++AGFT EER+ FS L
Sbjct: 118 YRTRWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D++R+ P + G Y++WSY AR N G +YF
Sbjct: 178 LDSGFIDTYRYFNPDKEGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|66910408|gb|AAH97053.1| Apex1 protein [Danio rerio]
gi|197246969|gb|AAI64240.1| Apex1 protein [Danio rerio]
Length = 296
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 140/234 (59%), Gaps = 22/234 (9%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+K G N KI SWNV GLRA VKK GLD+++KE A LP ++ P
Sbjct: 47 SKDGRAANMKITSWNVDGLRAWVKKNGLDWVRKEKA--------------LPADI-TGMP 91
Query: 125 EY-KTYWLSSP-KAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKN 180
EY YW S K GY+GV + K +P VTYG+G K EH GR + + F +
Sbjct: 92 EYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIG-KEEHDKEGRVITAEFPDFFLVTAY 150
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
VPNA GL LD R WD F +L LDA KP++L GDLNV+H+ IDL NP N ++AG
Sbjct: 151 VPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAG 210
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER+ F+ LL+ GFTDSFR LYP + AYT+W+YM ARS+N G +YF
Sbjct: 211 FTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYM-MNARSKNVGWRLDYF 263
>gi|423669305|ref|ZP_17644334.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|423674566|ref|ZP_17649505.1| exodeoxyribonuclease [Bacillus cereus VDM062]
gi|401298432|gb|EJS04032.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|401310117|gb|EJS15450.1| exodeoxyribonuclease [Bacillus cereus VDM062]
Length = 252
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 144/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y++K +ADIFCLQE K Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEKSNADIFCLQEIKLQSGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFTKKEPISVTYGLGIEEHDQEGRVITLEFDDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R+EW+ F ++ +LD +KPVI GDLNV+HK +DL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L+ GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TCVLEAGFIDTYRYLYPDQEGAYSWWSY-RMDARAKNIGWRLDYF 219
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRAC+ K LD+ ++ DADIFCLQETK E Q ++ P Y YW S+
Sbjct: 2 KFVSWNVNGLRACLNKGFLDFFREADADIFCLQETKMQEGQ----AELDLPGYLQYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH-YGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V Y + + GR + + + PN+ L L
Sbjct: 58 EKKGYSGTAVFTKKEPLSVCYDIRHPDHTGEGRAITLEFESFYLVNVYTPNSQRELVRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F E++ +LD +KPVI+ GDLNV+H+ IDL N +N +AGF+ EER + L
Sbjct: 118 YRMEWENAFREYVTQLDEKKPVIICGDLNVAHQEIDLKNAKSNIGNAGFSYEERGKLTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR LYP TGAYT+WSYM K AR N G +YF
Sbjct: 178 LASGFLDSFRELYPDLTGAYTWWSYMFK-ARQNNAGWRIDYF 218
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 145/223 (65%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA + K G L+Y+++ +ADIFCLQE K E Q+ V+ Y TYW
Sbjct: 2 KFISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQEGQIDLNVE----GYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKEEPLSVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 118 DYRMKWEDDFRVYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|169823955|ref|YP_001691566.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|417925665|ref|ZP_12569084.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167830760|dbj|BAG07676.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|341591291|gb|EGS34499.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 253
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 136/223 (60%), Gaps = 7/223 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G RA +KK +D +ADIFCLQE K E Q+ E M Y Y S+
Sbjct: 2 KLISWNVNGYRAVMKKGFMDAFNSLNADIFCLQEIKMKENQMTDE--MNIEGYHRYSYSA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
KAGY+G +YTKV+P V+YG+G +EH GR + F + PN+ L+ L
Sbjct: 60 NKAGYSGTLVYTKVEPIGVSYGIGI-DEHDTEGRVITCEYEDFFLVNVYTPNSKQKLERL 118
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ FH +L L KPVI+ GDLNV+H IDL NP +N RSAGFT EER+ S
Sbjct: 119 DYRMVWEDEFHNYLNILRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKMSL 178
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ G+ D+FR+ YP +T Y+YWSY +K AR RN G +YF
Sbjct: 179 LLNDGYIDTFRYFYPDKTDEYSYWSYFAK-ARERNAGWRIDYF 220
>gi|383810829|ref|ZP_09966315.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
gi|383356543|gb|EID34041.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
Length = 249
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 141/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K+ K +AD FCLQETK QL + FP Y++YW +
Sbjct: 2 KFISWNVNGLRACVGKDFEQQFKDFNADFFCLQETKMQAGQL----DLSFPGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VTYG+ +++H GR + + + + PN+ L+ L+
Sbjct: 58 DKKGYSGTAIFTKHKPLSVTYGINIDEHDHEGRVITLEMDDFYLVTVYTPNSQDELRRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F +L KLD KPVI+ GD+NV+H+ IDL NP TN R+AGFT EER+ + L
Sbjct: 118 YRMKWEEDFQSYLHKLDETKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEEREKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR LYP++ Y++WSY + AR +NTG +YF
Sbjct: 178 LNNGFIDTFRTLYPEQV-TYSWWSYRFR-AREKNTGWRIDYF 217
>gi|359412352|ref|ZP_09204817.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
gi|357171236|gb|EHI99410.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
Length = 252
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K L+Y K+ DADIFC+QE+K E Q + +K YK YW +
Sbjct: 3 KLISWNVNGLRACVNKGFLEYFKEADADIFCIQESKLQEGQ----IDLKLEGYKDYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V G+G ++++ GR + + PN+ GL+ LD
Sbjct: 59 EKKGYSGTAVFTKEEPISVKNGIGISEHDTEGRVITLEFKEFYLVNVYTPNSKQGLERLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ +F ++L +L+ +KPVI+ GDLNV+H+ IDL NP N ++AGFT EER+ S L
Sbjct: 119 YRMVWEDVFRKYLKELEEKKPVIICGDLNVAHEDIDLKNPKANRKNAGFTDEERNKISEL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D++R+ YP G Y++WSY AR N G +YF
Sbjct: 179 LEAGFIDTYRYFYPNTEGVYSWWSYRF-NARGNNAGWRIDYF 219
>gi|336429860|ref|ZP_08609818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336001765|gb|EGN31900.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 252
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 142/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ K+ DADIFC+QE+K E Q + ++ P Y YW +
Sbjct: 2 KLVSWNVNGLRACMGKGFMDFFKEADADIFCIQESKLQEGQ----ISLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + + PN+ GL LD
Sbjct: 58 VKKGYSGTAIFTKEEPLSVSYGLGLEEHDQEGRVITLEFPDFYMVTVYTPNSQDGLARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W++ F ++L KL+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER+ FS L
Sbjct: 118 YRMTWEEEFLKYLKKLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFSVL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP AY++WSY AR +N G +YF
Sbjct: 178 LENGFIDTFRYFYPDLKDAYSWWSYRFH-AREKNAGWRIDYF 218
>gi|422419400|ref|ZP_16496355.1| exodeoxyribonuclease III, partial [Listeria seeligeri FSL N1-067]
gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y DADIFCLQETK Q + + P YK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFDSVDADIFCLQETKLQAGQ----IDLDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +TK +P V YGLG + ++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTXXFTKKEPLSVQYGLGIEEHDTEGRVITLEFEKFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ ++ KLD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER F++
Sbjct: 118 YRMTFEDAILAYVKKLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+ YP AY++WSY AR+RN G +YF
Sbjct: 178 LEAGFVDSFRYFYPDLEDAYSWWSY-RMNARARNIGWRIDYF 218
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACV+K LD+ K DADIFCLQETK + Q + + Y+ YW +
Sbjct: 2 KLISWNVNGIRACVEKGFLDFFKSVDADIFCLQETKLQQGQ----IDLDLEGYEQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP +YGL + ++ GR + + + PN+ L L+
Sbjct: 58 EKKGYSGTAVFTKEKPLSASYGLNIEEHDKEGRVITLEYDDFYLVTVYTPNSKEELARLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F +L KL+ KPVI+ GDLNV+HK IDL NP TN ++ GF+ EER FS L
Sbjct: 118 YRMEWEDAFRAYLKKLEKNKPVIVCGDLNVAHKEIDLKNPKTNRKNPGFSDEERAKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D++R+ YP + GAY++WSY AR++N G +YF
Sbjct: 178 LASGFIDTYRYFYPDKEGAYSWWSYRF-NARTKNAGWRIDYF 218
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|373452187|ref|ZP_09544104.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
gi|371967081|gb|EHO84557.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
Length = 251
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+ K +D+ ++ DADIFC+QETK P ++ + P Y Y S+
Sbjct: 2 KMVSWNVNGIRACMTKGFMDFFQEIDADIFCIQETKMQ----PGQLDIVTPGYYQYMNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VTY LG +++H GR N + + PN+ GL LD
Sbjct: 58 DKKGYSGTMVFTKEKPIAVTYDLGIDEHDHEGRVITCEYENFYLVCVYTPNSKDGLLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L L +K VI+ GDLNV+HK IDL NP TN R+AGFT EER ++L
Sbjct: 118 YRMQWEDDFRAYLNALKEKKSVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERAKMTTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GF DSFR+LYP++ G Y++WSY K AR +N G +YF
Sbjct: 178 QQSGFIDSFRYLYPEQEGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|293400493|ref|ZP_06644638.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305519|gb|EFE46763.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 253
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+ K +D+ ++ DADIFC+QETK P ++ + P Y Y S+
Sbjct: 4 KMVSWNVNGIRACMTKGFMDFFQEIDADIFCIQETKMQ----PGQLDIATPGYYQYINSA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VTY LG +++H GR N + + PN+ GL LD
Sbjct: 60 DKKGYSGTMVFTKEKPIAVTYDLGIDEHDHEGRVITCEYENFYLVCVYTPNSKDGLLRLD 119
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L L +K VI+ GDLNV+HK IDL NP TN R+AGFT EER ++L
Sbjct: 120 YRMQWEDDFRAYLNALKEKKSVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERAKMTTL 179
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GF DSFR+LYP++ G Y++WSY K AR +N G +YF
Sbjct: 180 QQSGFIDSFRYLYPEQEGIYSWWSYRFK-AREKNAGWRIDYF 220
>gi|423367719|ref|ZP_17345151.1| exodeoxyribonuclease [Bacillus cereus VD142]
gi|401083372|gb|EJP91630.1| exodeoxyribonuclease [Bacillus cereus VD142]
Length = 252
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 145/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFTKKEPISVTYGLGIEEHDQEGRVITLEFDDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R+EW+ F ++ +LD +KPVI GDLNV+HK +DL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TCVLEEGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|423522432|ref|ZP_17498905.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
gi|401175126|gb|EJQ82329.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
Length = 252
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 144/224 (64%), Gaps = 10/224 (4%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWL 131
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 57 YAVKKGYSGTAIFTKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R+EW+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 117 LDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D++R+LYP + GAY++WSY+ AR++N G +YF
Sbjct: 177 LALEGGFVDTYRYLYPNQEGAYSWWSYLM-GARAKNIGWRLDYF 219
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 144/224 (64%), Gaps = 8/224 (3%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q + + Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQ----IDLDLEGYYTYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 57 YALKKGYSGTAIFTKKEPISVTYGLGIEEHDQEGRVITLEFDDFYMITLYTPNSKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R+EW+ F ++ +LD +KPV+ GDLNV+HK IDL NP +N ++ GF+ EER+ +
Sbjct: 117 LDYRMEWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKIT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP++ GAY++WSY AR++N G +YF
Sbjct: 177 RVLEEGFIDTYRYLYPEQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 145/224 (64%), Gaps = 10/224 (4%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWL 131
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++T+ +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 57 YAVKKGYSGTAIFTRKEPIAVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R+EW+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 117 LDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++L++GF D++R LYP + GAY++WSY AR++N G +YF
Sbjct: 177 NILEEGFVDTYRFLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ K+ DAD FCLQETK E Q + P Y+ Y+ S+
Sbjct: 2 RFVSWNVNGLRAALKKGFMESFKELDADAFCLQETKMQEGQ----AILDLPGYEQYFYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+VKP V G+G ++++ GR + + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTRVKPLSVARGIGIPQHDNEGRVITMEFDDLYLVTVYTPNSQNALARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L++L ++KPV++ GDLNV+H IDL NP +N R+AGFT EER F L
Sbjct: 118 YRMAWEDAFRSFLLELRSKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP + GAYT+WSY+ + AR N G +YF
Sbjct: 178 LAAGFVDTFRALYPDKVGAYTWWSYL-RHARETNAGWRIDYF 218
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRAC+KK LDY + +AD FCLQE K E QL E++ Y+TY+ +
Sbjct: 2 RFVSWNVNGLRACIKKGFLDYFNEINADFFCLQEIKMSEGQLDLELE----GYETYYNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK P V YG+G + +++ GR + F + PN+ L LD
Sbjct: 58 QRKGYSGTAIFTKYTPLSVKYGMGIEEHDNEGRLITLEYEDFFLVTCYTPNSKQELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L++L+ K VI+ GDLNV+HK IDL NP TN ++AGFT +ER+ S L
Sbjct: 118 YRMVWEDAFRNYLLELNKTKSVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDQEREKMSIL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP + Y++WSY K +R RNTG +YF
Sbjct: 178 LDSGFTDTFRYFYPDKENEYSWWSYFGK-SRERNTGWRIDYF 218
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 250
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ K+ DAD FCLQETK E Q + P Y+ Y+ S+
Sbjct: 2 RFVSWNVNGLRAALKKGFMESFKELDADAFCLQETKMQEGQ----AILDLPGYEQYFYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+VKP V G+G ++++ GR + + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTRVKPLSVARGIGIPQHDNEGRVITMEFDDLYLVTVYTPNSQNALARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L++L ++KPV++ GDLNV+H IDL NP +N R+AGFT EER F L
Sbjct: 118 YRMAWEDAFRAFLLELRSKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP + GAYT+WSY+ + AR N G +YF
Sbjct: 178 LAAGFVDTFRALYPDKVGAYTWWSYL-RHARETNAGWRIDYF 218
>gi|402303594|ref|ZP_10822685.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
gi|400378209|gb|EJP31070.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
Length = 250
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRA +KK ++ K+ DAD FCLQETK E Q + P Y+ Y+ S+
Sbjct: 2 RFVSWNVNGLRAALKKGFMESFKELDADAFCLQETKMQEGQ----AILDLPGYEQYFYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+VKP V G+G ++++ GR + + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTRVKPLSVARGIGIPQHDNEGRVITMEFDDLYLVTVYTPNSQNALARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L++L ++KPV++ GDLNV+H IDL NP +N R+AGFT EER F L
Sbjct: 118 YRMAWEDAFRAFLLELRSKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP + GAYT+WSY+ + AR N G +YF
Sbjct: 178 LAAGFVDTFRALYPDKVGAYTWWSYL-RHARETNAGWRIDYF 218
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 135/223 (60%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RACVKK +DY K+ DADIFC+QE+K E Q +++ Y YW
Sbjct: 1 MKLVSWNVNGIRACVKKGFMDYFKEVDADIFCIQESKLQEGQ----IELILEGYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P V YGLG + E GR + + PN+ L L
Sbjct: 57 AIKKGYSGTAVFTKKEPLSVRYGLGDNETEPEGRILTLEYEGFYLVNVYTPNSQRDLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
RLEW++ E+L+ LD KPVI+ GDLNV+H IDL N +N ++GFT EER +
Sbjct: 117 PYRLEWEERIREYLLGLDQIKPVIMCGDLNVAHFEIDLKNAKSNRGNSGFTDEERGKMTR 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF D+FR+ YP+ GAYT+WSYM+K R RN G +YF
Sbjct: 177 LLGSGFVDAFRYKYPEAEGAYTWWSYMAKV-RERNIGWRIDYF 218
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACVKK L + + ADIFC+QETK E Q + + Y YW +
Sbjct: 2 KFVSWNVNGLRACVKKGFLAFFAETGADIFCVQETKLQEGQ----IALDLDGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P V YG+G + E GR + + + PN+ L L
Sbjct: 58 ERKGYSGTAVFTKKEPLSVRYGVGENRTEPEGRILTLEYEDFYLVNVYTPNSQRDLARLG 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW+ +L LD +KPVI+ GD+NV+H+ IDL N +N ++GFT EERD + L
Sbjct: 118 YRLEWENRMRAYLTDLDKKKPVIVCGDMNVAHQEIDLKNAKSNIGNSGFTAEERDKMTGL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+ YP+R GAYT+WSYM+K R RN G +YF
Sbjct: 178 LNSGFIDSFRYFYPEREGAYTWWSYMNKV-RERNIGWRIDYF 218
>gi|423477848|ref|ZP_17454563.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
gi|402428773|gb|EJV60865.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
Length = 252
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 146/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K + Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQDGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K KP VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFSKKKPLSVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R++W+ F ++ +LD +KPV+ GDLNV+HK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMKWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TRILEEGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|303234331|ref|ZP_07320970.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
gi|302494447|gb|EFL54214.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
Length = 253
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 136/223 (60%), Gaps = 7/223 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G RA +KK +D +ADIFCLQE K E Q+ E M Y Y S+
Sbjct: 2 KLISWNVNGYRAVMKKGFMDAFNSLNADIFCLQEIKMKENQMTDE--MNIEGYHRYSYSA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
KAGY+G +YTKV+P V++G+G +EH GR + F + PN+ L+ L
Sbjct: 60 NKAGYSGTLVYTKVEPIGVSFGIGI-DEHDTEGRVITCEYEDFFLVNVYTPNSKQKLERL 118
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ FH +L L KPVI+ GDLNV+H IDL NP +N RSAGFT EER+ S
Sbjct: 119 DYRMVWEDEFHNYLNILRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKMSL 178
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ G+ D+FR+ YP +T Y+YWSY +K AR RN G +YF
Sbjct: 179 LLNDGYIDTFRYFYPDKTDEYSYWSYFAK-ARERNAGWRIDYF 220
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 253
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|158321340|ref|YP_001513847.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
gi|158141539|gb|ABW19851.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
Length = 252
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACV K LDY K+ DADIFC+QE+K Q+ E++ Y YW +
Sbjct: 3 KLISWNVNGIRACVTKGFLDYFKEVDADIFCIQESKLQAGQIDLELE----GYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YG+G + ++ GR + + + PN+ L LD
Sbjct: 59 EKKGYSGTAIFTKEEPISVFYGIGIEEHDKEGRVITLEFGDYYMVTVYTPNSQQKLARLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L LD +KP+I+ GDLNV+H IDL NP +N ++AGF+ EER F+
Sbjct: 119 YRMTWEDCFRSYLNNLDKQKPIIVCGDLNVAHNEIDLKNPKSNRKNAGFSDEERAKFTEF 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L G+ D++R+ YP R GAYT+WSYM AR+ N G +YF
Sbjct: 179 LGNGYIDTYRYFYPDREGAYTWWSYMF-NARANNAGWRIDYF 219
>gi|336401875|ref|ZP_08582631.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
gi|336160344|gb|EGN63396.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
Length = 253
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|325845494|ref|ZP_08168785.1| exodeoxyribonuclease III [Turicibacter sp. HGF1]
gi|325488513|gb|EGC90931.1| exodeoxyribonuclease III [Turicibacter sp. HGF1]
Length = 215
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 129/205 (62%), Gaps = 5/205 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACVKK LD+++ E D C+QETK E Q + ++ Y YW +
Sbjct: 2 KFISWNVNGLRACVKKGFLDFVEAEQPDFLCVQETKLQEGQ----IDLQLDGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P +VTYGL +++ GR + + + PN+ L LD
Sbjct: 58 VKKGYSGTAIFTKHEPLQVTYGLNIAEHDQEGRVITLEYNDFYLVTVYTPNSQNELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W++ F +L+ LD KPVI+ GDLNV+H+ IDL NP TNT++AGFTIEER+ + L
Sbjct: 118 YRLTWEEAFRNYLIGLDVLKPVIVCGDLNVAHQQIDLKNPKTNTKNAGFTIEERNEMTKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSY 277
L+ GF D+FR+ YP + Y++WSY
Sbjct: 178 LNSGFIDTFRYFYPTKENCYSWWSY 202
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + I PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKEEPLSVSYGLGIEEHDKEGRVITLEFEKFYMITVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP Y++WSY + AR NTG +YF
Sbjct: 178 LESGFIDTFRYFYPDLEHVYSWWSYRA-NARKNNTGWRIDYF 218
>gi|402846244|ref|ZP_10894559.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268322|gb|EJU17703.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 250
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA K D IK+ DAD CLQETK QL ++ P Y +YW +
Sbjct: 2 KFISWNVNGLRAVFTKGFPDIIKELDADFVCLQETKMQAGQLDADL----PSYISYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YT+ +P V+YG+G + ++ GR F + PN+ L+ LD
Sbjct: 58 VKKGYSGTAIYTRHEPLSVSYGIGIEEHDQEGRVITLEYPEFFLVTVYTPNSQDDLRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L LDA+KPVI+ GDLNV+HK IDL NP +N R+AGFT EER L
Sbjct: 118 YRMTWEDAFRSYLKGLDAKKPVIICGDLNVAHKEIDLKNPKSNRRNAGFTDEERGKLQEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP + Y++WSY K AR RN+G +YF
Sbjct: 178 LDAGFIDTFRYFYPDQADIYSWWSYRFK-ARERNSGWRIDYF 218
>gi|226322793|ref|ZP_03798311.1| hypothetical protein COPCOM_00565 [Coprococcus comes ATCC 27758]
gi|225208774|gb|EEG91128.1| exodeoxyribonuclease III [Coprococcus comes ATCC 27758]
Length = 231
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 130/204 (63%), Gaps = 7/204 (3%)
Query: 92 LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNK 151
+D+ K+ DADIFCLQETK E QL + PEY YW S+ K GY+G ++TK +P
Sbjct: 1 MDFFKEADADIFCLQETKMQEGQLV----LDLPEYHQYWNSAVKKGYSGTAIFTKKEPLS 56
Query: 152 VTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDA 210
VTYGLG + ++ GR + ++I PN+ + L LD R+ W+ F +L KL+
Sbjct: 57 VTYGLGIEEHDQEGRVITLEFEDFYFITVYTPNSQSELARLDYRMTWEDAFLAYLKKLEE 116
Query: 211 EKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTG 270
KPVI GDLNV+HK IDL NP TN ++AGFT EER FS+LLD GF D++R+ YP + G
Sbjct: 117 TKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFSALLDAGFIDTYRYFYPDKEG 176
Query: 271 AYTYWSYMSKTARSRNTGC-TNYF 293
Y++WSY K AR +N G +YF
Sbjct: 177 IYSWWSYRFK-AREKNAGWRIDYF 199
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 141/224 (62%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV GLRAC+ K +D+ ++ DADIFC+QE+K H P + F Y YW S+
Sbjct: 2 RLISWNVNGLRACMNKGFMDFFRQIDADIFCIQESKMH----PDQADFVFDGYHGYWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGLKT 190
K GY+GV + +K +P V Y +G EH+ GR + + + I PN+ L+
Sbjct: 58 EKKGYSGVVVLSKQEPLCVEYDMGI--EHHDKEGRVICAEYPDFYLINVYTPNSKRELER 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R++W+ F L L+ +KP+I+ GDLNV+HK IDL NP TN R+AGFT EER+ +
Sbjct: 116 LEYRMQWEDDFLNFLKNLERKKPLIICGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMT 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL+ GF D+FR+ YP GAY++WSYM + AR NTG +YF
Sbjct: 176 TLLENGFIDTFRYFYPDLEGAYSWWSYMGR-ARQNNTGWRIDYF 218
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMIWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|282858966|ref|ZP_06268104.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|424898885|ref|ZP_18322433.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
gi|282588246|gb|EFB93413.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|388593595|gb|EIM33832.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
Length = 249
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K + DAD FCLQETK E QL + FP Y++YW +
Sbjct: 2 KFISWNVNGLRACVGKNFKEDFAALDADFFCLQETKMQEGQL----DLSFPGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VT G+G +++H GR + + + + PN+ LK L
Sbjct: 58 DKKGYSGTAIFTKHKPLTVTTGIGIDEHDHEGRVITLEMDDFYLVTVYTPNSQDELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KLD KPVI+ GD+NV+H+ IDL NP TN +AGF+ EER+ + L
Sbjct: 118 YRMQWETDFQAYLHKLDEHKPVIVCGDMNVAHEEIDLKNPKTNHHNAGFSDEEREKMTIL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD+FR+LYP++ Y++WSY K AR +NTG +YF
Sbjct: 178 LNNGFTDTFRYLYPEQV-TYSWWSYRFK-AREKNTGWRIDYF 217
>gi|310659330|ref|YP_003937051.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
gi|308826108|emb|CBH22146.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
Length = 250
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 135/224 (60%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACVKK L+Y + +ADIFC+QETK E Q + + +Y+ YW +
Sbjct: 2 KLISWNVNGIRACVKKGFLEYFDEVEADIFCIQETKLQEGQ----IDLMLNDYEQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAGAGLKT 190
K GY+G ++TK+KP V YG+ EH+ GR N + + PNA L
Sbjct: 58 EKKGYSGTAVFTKIKPISVAYGIDI--EHHDTEGRVITLEYDNFYLVNVYTPNAQPKLAR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R++W+ F +L LD +KPVI+ GDLNV+H IDL NP +N ++ GF+ EER F+
Sbjct: 116 LEYRMQWEDDFRRYLNDLDEKKPVIVCGDLNVAHNEIDLKNPKSNRKNPGFSDEERGKFT 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LLD GF DSFR YP T YT+WSY AR N G +YF
Sbjct: 176 NLLDSGFIDSFRFFYPDATEMYTWWSY-RFNARENNAGWRIDYF 218
>gi|336420229|ref|ZP_08600467.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
gi|336161634|gb|EGN64634.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
Length = 253
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMIWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|260909404|ref|ZP_05916112.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
gi|260636496|gb|EEX54478.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
Length = 249
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 136/222 (61%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K+ + K DAD FCLQETK QL ++F Y+++W +
Sbjct: 2 KFISWNVNGLRAVVGKDFENIFKSLDADFFCLQETKMQAGQL----DLQFDGYESFWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YT+ KP VTYG+G +++H GR + F + PN+ L+ LD
Sbjct: 58 DKKGYSGTAIYTRHKPLNVTYGIGIDQHDHEGRVITLEMPTFFLVTVYTPNSQDELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L LD KPVI+ GD+NV+H+ IDL NP TN R+AGFT EER + L
Sbjct: 118 YRMQWEDDFQAYLHDLDKRKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR YP+ Y++WSY K AR RNTG +YF
Sbjct: 178 LGAGFTDTFRWKYPEEI-TYSWWSYRFK-ARERNTGWRIDYF 217
>gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMIWEDEFRKYLKNLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|229191862|ref|ZP_04318833.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
gi|228591624|gb|EEK49472.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
Length = 252
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 143/223 (64%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ ADIFCLQE K E Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGL + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLDIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ FS
Sbjct: 118 DYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GFTD++R+LYP + AY++WSY AR++N G +YF
Sbjct: 178 ILEEGFTDTYRYLYPDQESAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|315606307|ref|ZP_07881323.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
gi|315251998|gb|EFU31971.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
Length = 249
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 140/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
+ SWNV GLRACV K + K DAD FCLQETK E QL ++F Y +YW +
Sbjct: 2 RFISWNVNGLRACVSKGFEESFKALDADFFCLQETKMQEGQL----NLQFEGYDSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YTK KP VTYGLG + ++H GR + + + I PN+ L+ L+
Sbjct: 58 EKKGYSGTAIYTKHKPLNVTYGLGIEEHDHEGRVITLEMEDFYLITVYTPNSQDELRRLN 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +++ LDA+KPVI+ GDLNV+H+ IDL NP TN R+AGFT EER+ +
Sbjct: 118 YRMTWEDDFLKYIQGLDAKKPVIVCGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTIT 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTDSFR+ YP++ Y++WSY AR +N G +YF
Sbjct: 178 LNSGFTDSFRYKYPEQV-TYSWWSYRFH-AREKNAGWRIDYF 217
>gi|229061336|ref|ZP_04198683.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|423511766|ref|ZP_17488297.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
gi|228717951|gb|EEL69596.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|402450027|gb|EJV81861.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
Length = 252
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 144/224 (64%), Gaps = 10/224 (4%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWL 131
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 57 YAVKKGYSGTAIFTKKEPISVTYGLGIEEHDQEGRVITLEFDDFYMITLYTPNSKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R+EW+ F ++ +LD +KPVI GDLNV+HK +DL NP +N ++ GF+ EER+ F+
Sbjct: 117 LDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L+ GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 177 CVLEAGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RAC+ K + + DADIFCLQETKC + Q VK++ P Y YW +
Sbjct: 2 KFISWNVNGIRACITKGFEERFHELDADIFCLQETKCQQGQ----VKLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P YG+G + ++ GR +++ PN+ + L+ L+
Sbjct: 58 NRRGYSGTAIFTKREPLSAAYGIGIEEHDKEGRVITLEFDEYYFVTVYTPNSQSELRRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F +L+KL +KPVI GDLNV+H+ IDL NP TN ++AGFT EER F+
Sbjct: 118 YRMKWEEDFLAYLLKLQEKKPVICCGDLNVAHQEIDLKNPKTNRKNAGFTDEERACFTRA 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + G Y++WSY + AR +N G +YF
Sbjct: 178 LESGFIDTFRYFYPDKEGVYSWWSYRFR-AREKNAGWRIDYF 218
>gi|229031365|ref|ZP_04187367.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
gi|228729930|gb|EEL80908.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
Length = 252
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 145/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K + Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQDGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K +P VTYGLG + ++ GR + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFSKQEPLSVTYGLGIEEHDQEGRVITVEFEGFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMKWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TRILEEGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|423137872|ref|ZP_17125515.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371959030|gb|EHO76727.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 253
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA VKK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAVKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV+ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDEFRKYLKNLEKKKPVVACGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 144/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFTKKEPISVTYGLGIEEHDQEGRVITLEFDDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R+EW+ F ++ +LD +KPVI GDLNV+HK +DL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L+ GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TCVLEAGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV+K L+Y K+ DADIFC+QE+K E Q +++ Y YW +
Sbjct: 4 KMISWNVNGLRACVQKGFLEYFKEADADIFCIQESKLQEGQ----IELPLEGYHQYWNYA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K +P V+YG+G + ++ GR + + PN+ L L
Sbjct: 60 KKKGYSGTAVFSKEEPLSVSYGIGIEEHDQEGRVITLEFDTYYLVTVYTPNSQNELARLP 119
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W++ F +L L+ KPVI GDLNV+HK IDL NP TN ++AGFT EER+ FS +
Sbjct: 120 YRMTWEEAFLAYLKGLEKNKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFSQI 179
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D++R+ YP++ G Y++WSY + AR +N G +YF
Sbjct: 180 LENGFIDTYRYFYPEQEGVYSWWSYRFR-AREKNAGWRIDYF 220
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|423592321|ref|ZP_17568352.1| exodeoxyribonuclease [Bacillus cereus VD048]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|401230563|gb|EJR37070.1| exodeoxyribonuclease [Bacillus cereus VD048]
Length = 252
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 144/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFTKKEPISVTYGLGIEEHDQEGRVITLEFDDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R+EW+ F ++ +LD +KPVI GDLNV+HK +DL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L+ GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TCVLEAGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+H+ IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMTWEDEFRKYLKNLEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFVDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|149033629|gb|EDL88427.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_b [Rattus
norvegicus]
Length = 294
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 162/294 (55%), Gaps = 42/294 (14%)
Query: 4 KKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNK 63
K+AAA+ D EE S+ + + + T+K +G P ++K S +
Sbjct: 6 KRAAAE--DGEEPKSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSAS-------- 55
Query: 64 KNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKF 123
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ +
Sbjct: 56 ----GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-EL 110
Query: 124 PEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNV 181
P + S+P K GY+GVGL ++ P KV+YG+ V
Sbjct: 111 PGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIAY----------------------V 148
Query: 182 PNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGF 241
PNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGF
Sbjct: 149 PNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGF 208
Query: 242 TIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
T +ER F +L DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 209 TPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 261
>gi|12247526|gb|AAG49922.1|AF311054_1 APEX [Rattus norvegicus]
Length = 289
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 162/294 (55%), Gaps = 42/294 (14%)
Query: 4 KKAAAKVVDKEEKSSKKRKSEVEDSDANTKKTKSGSVENKATGPMNEKLSLNKIDYSCNK 63
K+AAA+ D EE S+ + + + T+K +G P ++K S +
Sbjct: 1 KRAAAE--DGEEPKSEPETKKSKGAAKKTEKEAAGEGPVLYEDPPDQKTSAS-------- 50
Query: 64 KNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKF 123
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ +
Sbjct: 51 ----GKSATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-EL 105
Query: 124 PEYKTYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNV 181
P + S+P K GY+GVGL ++ P KV+YG+ V
Sbjct: 106 PGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIAY----------------------V 143
Query: 182 PNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGF 241
PNAG GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGF
Sbjct: 144 PNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGF 203
Query: 242 TIEERDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
T +ER F +L DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 204 TPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTFWTYM-MNARSKNVGWRLDYF 256
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LDY + DADIFC+QETK E Q +++ Y +W +
Sbjct: 2 KLVSWNVNGLRACVKKGFLDYFHEMDADIFCVQETKLQEGQ----IELDLEGYHQFWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH-YGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V+YG+ +NE GR + + I PN+ L L
Sbjct: 58 IKKGYSGTAVFTKKKPLSVSYGVADENEEDEGRILTLEFEDFYLINVYTPNSQRDLARLH 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W+ E+L++L+ KP++L GDLNV+H IDL N +N ++GFT EER + L
Sbjct: 118 FRLNWEDRIREYLIQLNKLKPIVLCGDLNVAHSDIDLKNAKSNRGNSGFTEEERGKMTDL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+ YP T YT+WSYM + R +N G +YF
Sbjct: 178 LNSGFIDSFRYFYPDMTDKYTWWSYM-RNVREKNIGWRIDYF 218
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 144/224 (64%), Gaps = 10/224 (4%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWL 131
K SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 2 KFISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++TK +P V YGLG + ++ GR + + I PN+ GL+
Sbjct: 57 YAVKKGYSGTAIFTKKEPISVMYGLGIEEHDQEGRVITLEFDDFYMITLYTPNSKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R+EW+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 117 LDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP++ GAY++WSY AR++N G +YF
Sbjct: 177 CVLEEGFIDTYRYLYPEQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+H+ IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMTWEDEFRKYLKNLEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|406882207|gb|EKD30059.1| hypothetical protein ACD_78C00169G0004 [uncultured bacterium (gcode
4)]
Length = 267
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 133/222 (59%), Gaps = 3/222 (1%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+R+ + K L+Y+ E+ DI LQE K E Q P ++ Y YW ++
Sbjct: 14 KAVSWNVNGVRSVLTKGFLEYLATENPDIIGLQEVKATEEQFPAGFDLQSMGYHIYWNAA 73
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G +++KV+P V YGLG K ++ GR F++ PNA + L+ L+
Sbjct: 74 ERKGYSGTAVFSKVEPISVRYGLGMKEHDQEGRIITLEFEKYFFVTVYTPNAKSELERLE 133
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R WD LF ++L +L+ EKPVI+ GDLNV+H+ IDL NP N +AGFT EER F
Sbjct: 134 YRQLWDSLFFDYLKRLEVEKPVIVCGDLNVAHQEIDLTNPKPNRWNAGFTDEERAGFGHY 193
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH YP +TG YT+WS K+ R RN G +YF
Sbjct: 194 LANGFIDTFRHFYPDKTGEYTWWSNFFKS-RDRNIGWRIDYF 234
>gi|260495692|ref|ZP_05815815.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
gi|260196757|gb|EEW94281.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
Length = 253
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLSVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV+ GDLNV+HK IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMVWEDEFRKYLKNLEKKKPVVACGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|423390009|ref|ZP_17367235.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|401640925|gb|EJS58651.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
Length = 252
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 144/224 (64%), Gaps = 10/224 (4%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWL 131
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++TK +P VTYGLG +++ GR + I PN+ GL+
Sbjct: 57 YAVKKGYSGTAIFTKKEPLSVTYGLGIDEHDQEGRVITLEFEDFHMITLYTPNSKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R++W+ F ++ +LD +KPVI GDLNVSHK IDL NP +N ++ GF+ EER+ F+
Sbjct: 117 LDYRMKWEDDFRAYIKRLDKKKPVIFCGDLNVSHKEIDLKNPKSNRKNPGFSDEEREKFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R LYP++ GAY++WSY AR++N G +YF
Sbjct: 177 KILEEGFVDTYRFLYPEQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|291528729|emb|CBK94315.1| exodeoxyribonuclease III [Eubacterium rectale M104/1]
Length = 251
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV+K LD+ DAD FC+QE+K Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRACVQKGFLDFFNSIDADFFCIQESKLQAGQ----IDLDLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K +P V+YG+G + ++ GR N + + PN+ LK L
Sbjct: 58 EKKGYSGTAIFAKNEPLSVSYGIGIEEHDKEGRVITLEYDNFYLVTCYTPNSQNELKRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F E+L LDA+KPV+L GDLNV+H IDL NP TN ++AGF+ EER + L
Sbjct: 118 YRMQWEDDFREYLKTLDAKKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR+ YP G Y++WSY K AR +N G +YF
Sbjct: 178 LGSGFTDTFRYFYPDAEGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLTVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDELLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +KPV++ GDLNV+H+ IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMTWEDEFRKYLKNLEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|348027153|ref|YP_004766958.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
gi|341823207|emb|CCC74131.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
Length = 254
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +KK LD + DAD+FCLQETK Q + + P Y+ YW +
Sbjct: 6 KFISWNVNGLRAVMKKGFLDIFQALDADVFCLQETKLQAGQ----IDLDLPGYEQYWNYA 61
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++T++ P V YG+G +++H GR + +++ PN+ + L L
Sbjct: 62 DRKGYSGTAIFTRLAPLSVRYGMGIDEHDHEGRLITLEFPDYYFVTCYTPNSQSELARLP 121
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F ++L+ L EKPVI+ GDLNV+H+ IDL NP TN ++AGF+ EER + L
Sbjct: 122 YRMKWEDDFRQYLLDLHQEKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERQKMTDL 181
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD++R+ YP TG Y++WSY K AR N G +YF
Sbjct: 182 LAAGFTDTWRYFYPDVTGVYSWWSYRFK-ARQNNAGWRIDYF 222
>gi|288929660|ref|ZP_06423504.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
gi|288329165|gb|EFC67752.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
Length = 249
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 136/222 (61%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K+ + K DAD FCLQETK QL ++F Y ++W +
Sbjct: 2 KFISWNVNGLRAVVGKDFENTFKALDADFFCLQETKMQAGQL----DLQFDGYDSFWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YT+ KP V+YG+G +++H GR + F + PN+ L+ LD
Sbjct: 58 DKKGYSGTAIYTRHKPLNVSYGIGIDQHDHEGRVITLEMPTFFLVTVYTPNSQEELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L LD KPVI+ GD+NV+H+ IDL NP TN R+AGFT EER + L
Sbjct: 118 YRMQWEDDFQAYLHNLDKCKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR YP+ Y++WSY K AR RNTG +YF
Sbjct: 178 LDAGFTDTFRWKYPEEV-TYSWWSYRFK-ARERNTGWRIDYF 217
>gi|328870805|gb|EGG19178.1| transcription factor IIIC-gamma subunit [Dictyostelium
fasciculatum]
Length = 1238
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 140/231 (60%), Gaps = 13/231 (5%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
KI SWNVAG AC KK DY+ KE DI CLQETK ++P K + PE TY
Sbjct: 114 QIKIVSWNVAGFGACTKKGFKDYLIKEQPDIVCLQETKIAVAKVP---KSEIPEGYTYHF 170
Query: 132 SS--PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
+ K G+ G L TK+KP +T G+G +K++ GR + + + + VPN+G
Sbjct: 171 NPCIEKTGHHGTALLTKIKPISITSGIGISKHDQEGRVVTAEFEDFYVVNAYVPNSGVDR 230
Query: 189 KTLDKRL-----EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTI 243
K KRL EWD F +++ L+ +KPV+ GDLNV+H IDLANP +N+R+AGFTI
Sbjct: 231 KEPLKRLGYRTKEWDVDFFKYMSDLNTKKPVVWCGDLNVAHTEIDLANPKSNSRTAGFTI 290
Query: 244 EERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
EER SFS L+ GF D+ RH P +TG YT+WSYM AR++N G +YF
Sbjct: 291 EERTSFSGHLNSGFIDTHRHFNPGKTGTYTFWSYMG-GARAKNAGWRLDYF 340
>gi|238922913|ref|YP_002936426.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
gi|238874585|gb|ACR74292.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
Length = 251
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV+K LD+ DAD FC+QE+K Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRACVQKGFLDFFNSIDADFFCIQESKLQAGQ----IDLDLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K +P V+YG+G + ++ GR N + + PN+ LK L
Sbjct: 58 EKKGYSGTAIFAKNEPLSVSYGIGIEEHDKEGRVITLEYDNFYLVTCYTPNSQNELKRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F E+L LDA+KPV+L GDLNV+H IDL NP TN ++AGF+ EER + L
Sbjct: 118 YRMQWEDDFREYLKTLDAKKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR+ YP G Y++WSY K AR +N G +YF
Sbjct: 178 LGSGFTDTFRYFYPDAEGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 144/224 (64%), Gaps = 8/224 (3%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K + Q + + Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQDGQ----IDLNLEGYYTYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G +++K +P VTYGLG + ++ GR + I PN+ GL+
Sbjct: 57 YAVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRVITLEFEDFHMITLYTPNSKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 117 LDYRMKWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 177 CVLEEGFIDTYRYLYPDQKGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 139/223 (62%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKK-EGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV G RA +K + ++K+ AD C+QETK H+ Q V++ P Y +W
Sbjct: 2 KFISWNVNGFRALQRKMDVFSWLKETGADALCIQETKLHQDQ----VQIDTPGYHQFWND 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++TK KP +VTYG+G + ++ GR + + + PNA L L
Sbjct: 58 AVRKGYSGTAIFTKNKPLRVTYGMGIEVHDQEGRLITLEYEDYYLVTVYTPNAKRDLTRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
RLEW F +++ +LD +KPVI GDLNV+H+ IDL P N ++GFTIEER+ F++
Sbjct: 118 AYRLEWGAAFTDYMKRLDEKKPVIFCGDLNVAHQAIDLTYPKNNKGNSGFTIEEREDFTA 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GF DSFRHLYP+RT AY++WS++ AR RN G +YF
Sbjct: 178 LLNNGFVDSFRHLYPERTDAYSWWSFLFN-ARERNIGWRIDYF 219
>gi|456012224|gb|EMF45930.1| Exodeoxyribonuclease III [Planococcus halocryophilus Or1]
Length = 252
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 133/223 (59%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA +KK +D+ + +AD+FCLQE K E Q ++M P Y TYW
Sbjct: 2 LKLISWNVNGLRAVMKKGFMDFFTEVNADVFCLQEIKLQEGQ----IEMDLPGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK KP + YGLG + + GR N + I PN+ GL L
Sbjct: 58 AHKKGYSGTAIFTKQKPLSIQYGLGLEELDTEGRIITLEFDNYYVITVYTPNSQHGLLRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D RL W+ + LD KPV+L GDLNV+H+ IDL NP N +++GFT+EER +
Sbjct: 118 DYRLLWEDAILSFVKALDNHKPVLLCGDLNVAHEEIDLRNPKANKKNSGFTLEERGKMTQ 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+KGF D+FRH +P+ G Y++WSY S R +N G +YF
Sbjct: 178 FLEKGFVDTFRHFHPEEEGHYSWWSYRS-NCREKNVGWRIDYF 219
>gi|423401446|ref|ZP_17378619.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
gi|401654436|gb|EJS71979.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
Length = 252
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 145/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ ADIFCLQE K + Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQDGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R++W+ F ++ +LD +KPV+ GDLNV+HK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMKWEDDFRAYIKRLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TRILEEGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|260592674|ref|ZP_05858132.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
gi|260535444|gb|EEX18061.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
Length = 249
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 139/222 (62%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K+ K +AD FCLQETK QL + FP Y++YW +
Sbjct: 2 KLISWNVNGLRACVGKDFEQQFKDFNADFFCLQETKMQAGQL----DLSFPGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+ KP VTYG+ +++H GR + + + + PN+ L+ L+
Sbjct: 58 DKKGYSGTAIFTRHKPLSVTYGIDIDEHDHEGRVITLEMDDFYLVTVYTPNSQDELRRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KLD KPVI+ GD+NV+H+ IDL NP TN R+AGFT EER + L
Sbjct: 118 YRMKWEDDFQSYLHKLDEIKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP++ Y++WSY + AR +NTG +YF
Sbjct: 178 LSNGFIDTFRTLYPEQV-TYSWWSYRFR-AREKNTGWRIDYF 217
>gi|354558981|ref|ZP_08978234.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
gi|353545305|gb|EHC14757.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
Length = 251
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACV K LD+ KE+ADIF +QETK E Q+P + Y YW +
Sbjct: 2 KLISWNVNGIRACVNKGFLDFFNKENADIFSIQETKVQEEQIP----FQLEGYYQYWNFA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K +P + YG+G + ++ GR + + PN+ L L+
Sbjct: 58 QKKGYSGTAIFSKKEPLNIRYGIGIEEHDQEGRVITLEFEKFYMVTVYTPNSQRELARLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L L+ KPVI GDLNV+HK IDL NP N +AGF+ EER + +
Sbjct: 118 YRMKWEDDFLHYLRDLEQLKPVIFCGDLNVAHKEIDLKNPKANKNNAGFSAEERGKLTRV 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+D+GFTD+FR+ YP++T AYT+WSYM AR+ N G +YF
Sbjct: 178 MDQGFTDTFRYFYPEQTEAYTWWSYMF-NARANNAGWRIDYF 218
>gi|414085431|ref|YP_006994142.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412999018|emb|CCO12827.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 251
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 139/223 (62%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KLISWNVNGLRAVVKKGFIDIFNQLDADFFCLQETKLQADQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G ++TK +P+ V YGLG K EH GR + + + + PN+ LK L
Sbjct: 58 EKKGYSGTAIFTKHEPDDVFYGLG-KEEHDQEGRVITLSYPDYYVVTCYTPNSQNELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W++ F +L +LDAEKPVI+ GDLNV+H+ ID+ N TN ++AGFT EER F+
Sbjct: 117 DYRMTWEEDFLAYLNQLDAEKPVIVCGDLNVAHENIDIKNWKTNRKNAGFTDEERGKFTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ G+ D+FR+ YP+ GAY++WSY AR+ N G +YF
Sbjct: 177 FLENGYIDTFRYFYPELEGAYSWWSYRF-NARANNAGWRIDYF 218
>gi|229174398|ref|ZP_04301930.1| Exodeoxyribonuclease [Bacillus cereus MM3]
gi|228608958|gb|EEK66248.1| Exodeoxyribonuclease [Bacillus cereus MM3]
Length = 252
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 145/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ + DIFCLQE K + Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNVDIFCLQEIKLQDGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFTKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R++W+ F ++ +LD +KPV+ GDLNV+HK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMKWEDDFRAYIKQLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TCILEEGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 144/224 (64%), Gaps = 10/224 (4%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWL 131
K+ SWNV GLRA + K G L+Y+++ + DIFCLQE K Q+ PE Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESNTDIFCLQEIKLQSGQIDLN-----PEGYYTYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++T+ +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 57 YAVKKGYSGTAIFTRKEPIAVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLER 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R+EW+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 117 LDYRMEWEDDFRAYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFT 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++L++GF D++R LYP + GAY++WSY AR++N G +YF
Sbjct: 177 NILEEGFVDTYRFLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|160915303|ref|ZP_02077516.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
gi|158433102|gb|EDP11391.1| exodeoxyribonuclease III [Eubacterium dolichum DSM 3991]
Length = 252
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 141/223 (63%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RAC+KK +D+ + DADIFC+QETK P +++++ Y Y S
Sbjct: 1 MKLVSWNVNGIRACMKKGFMDFFQAIDADIFCIQETKMQ----PGQLEIETDGYVQYMNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+GV +++K +P V+YGLG +++H GR + + PN+ GL L
Sbjct: 57 ADKKGYSGVMVFSKKEPLSVSYGLGIDEHDHEGRVITCEYDTFYLVCVYTPNSKDGLLRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F +L +L K V++ GDLNV+H+ IDL NP TN R+AGFT EER+ ++
Sbjct: 117 DYRMQWEDAFRAYLQRLKESKSVVVCGDLNVAHQEIDLKNPKTNRRNAGFTDEEREKMTT 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF DS+R+LYP + Y++WSY +AR +N G +YF
Sbjct: 177 LLSSGFVDSYRYLYPDKENVYSWWSY-RFSAREKNAGWRIDYF 218
>gi|312898827|ref|ZP_07758215.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
gi|310619989|gb|EFQ03561.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
Length = 250
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +KK + K+ DADIFCLQETK Q ++M P Y+ YW +
Sbjct: 2 KFISWNVNGLRAVMKKGFPEIFKELDADIFCLQETKLQAGQ----IEMDLPGYEQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T++KP V+YG+ +++H GR + ++I PN+ + L LD
Sbjct: 58 DKKGYSGTAIFTRIKPLSVSYGMNIDEHDHEGRLITLEFEDFYFITCYTPNSQSELARLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++ +L+ KPVI GDLNV+H+ IDL NP TN ++AGF+ EER + L
Sbjct: 118 YRMRWEDDFRNYVTELNRTKPVIFCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD++R+ YP + G Y++WSY K AR N+G +YF
Sbjct: 178 LAAGFTDTWRYFYPDKEGVYSWWSYRFK-ARQNNSGWRIDYF 218
>gi|225376286|ref|ZP_03753507.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
gi|225211932|gb|EEG94286.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
Length = 255
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 138/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRAC++K LD+ + DAD FC+QETK E Q + + P Y +W +
Sbjct: 6 KFISWNVNGLRACMQKGFLDFFNEVDADFFCVQETKLQEGQ----IALDLPGYHQFWNYA 61
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YG+G +++H GR + + PN+ L L
Sbjct: 62 EKKGYSGTAIFTKHEPLSVSYGIGIPEHDHEGRVITLEYDAFYLVTCYTPNSQNELARLP 121
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W++ F L +LD KPVI+ GDLNV+H+ IDL NP TN ++AGF+ EER ++L
Sbjct: 122 YRMQWEEDFLAFLKRLDEVKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTTL 181
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD+FR+ YP + G Y++WSY K AR +N G +YF
Sbjct: 182 LNSGFTDTFRYFYPDKEGIYSWWSYRFK-AREKNAGWRIDYF 222
>gi|303237381|ref|ZP_07323951.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
gi|302482768|gb|EFL45793.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
Length = 250
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 138/222 (62%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K + + DAD FCLQETK QL + F Y++YW +
Sbjct: 2 KFISWNVNGLRACVTKGFKESFEAIDADFFCLQETKMQAGQLD----IAFDGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P VTYGLG + ++H GR + N + + PN+ GLK L+
Sbjct: 58 EKKGYSGTAIFTKHQPLNVTYGLGIEEHDHEGRVITLEMENFYLVTCYTPNSQDGLKRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++ +LD +KPVI+ GDLNV+H+ IDL NP TN ++AGF+ EER +
Sbjct: 118 YRMRWEDDFQTYIKRLDEKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTQF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L KGF DSFR LYP++ Y++WSY K AR +N G +YF
Sbjct: 178 LGKGFIDSFRTLYPEQV-TYSWWSYRFK-AREKNAGWRIDYF 217
>gi|403385824|ref|ZP_10927881.1| exodeoxyribonuclease [Kurthia sp. JC30]
Length = 252
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 135/223 (60%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV G+RAC+KK L Y ++ DAD FC+QE+KC Q V++ P Y+ YW
Sbjct: 1 MKFVSWNVNGIRACLKKGFLAYFEQVDADFFCIQESKCQAGQ----VEIDLPGYEQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++TK P V YG+G ++ E GR + + PN+ L L
Sbjct: 57 ALRKGYSGTAIFTKHTPLSVKYGVGDRDTEDEGRIITLEYERFYVVTVYTPNSKRDLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D+RLEW+ +L++LD +KPVI GDLNV+H+ IDL N N ++GFT EER +
Sbjct: 117 DERLEWEDNLRAYLIELDQQKPVIYCGDLNVAHEAIDLKNAKPNVGNSGFTNEERGKMTL 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTD+FR +YP+ +T+WSYM+K R RN G +YF
Sbjct: 177 LLNSGFTDTFRAMYPQEDNRFTWWSYMNK-VRERNIGWRIDYF 218
>gi|291523803|emb|CBK89390.1| exodeoxyribonuclease III [Eubacterium rectale DSM 17629]
Length = 251
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV+K LD+ D D FC+QE+K Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRACVQKGFLDFFNSIDVDFFCIQESKLQAGQ----IDLDLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K +P V+YG+G + ++ GR N + + PN+ LK L
Sbjct: 58 EKKGYSGTAIFAKNEPLSVSYGIGIEEHDKEGRVITLEYDNFYLVTCYTPNSQNELKRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F E+L LDA+KPV+L GDLNV+H IDL NP TN ++AGF+ EER + L
Sbjct: 118 YRMQWEDDFREYLKALDAQKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR+ YP G Y++WSY K AR +N G +YF
Sbjct: 178 LGSGFTDTFRYFYPDAEGIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|375091411|ref|ZP_09737704.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
gi|374563511|gb|EHR34824.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
Length = 250
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA + K ++YI++ED DI CLQE K + QL ++ P+Y ++ +
Sbjct: 2 KLISWNVNGLRAVMNKGFMEYIEQEDPDIICLQEIKLAKGQL----EVDLPQYHEFYNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P +YG+G + ++ GR + + + PN+ GL LD
Sbjct: 58 ERRGYSGTAIFTKEEPLSHSYGIGIEEHDKEGRVITLEYEDFYLVTCYTPNSKRGLLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W+ F +L+KL+ KPVIL GDLNV+HK IDLANP +N R+AGFT EER F+ L
Sbjct: 118 YRQVWEDDFRNYLLKLNKTKPVILCGDLNVAHKEIDLANPKSNRRNAGFTDEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY++K AR RN G +YF
Sbjct: 178 LDAGFIDTFRYFYPDIPEMYSWWSYITK-ARERNVGWRIDYF 218
>gi|403669653|ref|ZP_10934844.1| exodeoxyribonuclease [Kurthia sp. JC8E]
Length = 253
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 134/223 (60%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV G+RAC+KK L Y ++ DAD FC+QETKC Q V++ P Y+ YW
Sbjct: 1 MKFVSWNVNGIRACLKKGWLTYFQEVDADFFCIQETKCQAGQ----VEIDLPGYEQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK P V YG+G + E GR N + + PN+ L L
Sbjct: 57 ALKKGYSGTAIFTKHTPLSVKYGVGDHETEDEGRIITLEYENFYVVTVYTPNSKRDLARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
++RL W+ +L +LDA+KPVI GDLNV+H+ IDL N +N ++GFT ER +
Sbjct: 117 EERLVWEDDLRVYLQQLDAQKPVIYCGDLNVAHEEIDLKNAKSNVGNSGFTDGERSKMTL 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTDSFRH YP + +T+WSYM+K R RN G +YF
Sbjct: 177 LLNSGFTDSFRHKYPTESNRFTWWSYMNK-VRERNIGWRIDYF 218
>gi|229086305|ref|ZP_04218483.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
gi|228697000|gb|EEL49807.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
Length = 252
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 140/226 (61%), Gaps = 12/226 (5%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQ--LPPEVKMKFPEYKTY 129
K SWNV GLRA + K G ++Y+++ D DIFCLQE K Q L PE Y Y
Sbjct: 1 MKFISWNVNGLRAVIAKGGFIEYLEETDTDIFCLQEIKLQSGQVDLNPE------GYYVY 54
Query: 130 WLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
W + K GY+G + TK +P VTYGLG + ++ GR + + + PNA GL
Sbjct: 55 WNYAVKKGYSGTAILTKKEPLSVTYGLGIEEHDQEGRLITLEFEDFYMLTLYTPNAKRGL 114
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
+ LD R++W++ ++ KLD +KPVI GDLNV+HK IDL NP TN ++ GF+ +ER
Sbjct: 115 ERLDYRMKWEEDILSYITKLDKKKPVIFCGDLNVAHKEIDLKNPKTNRKNPGFSDQERKR 174
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
F+ +LD+GF D++R+LYP R GAY++WSY AR++N G +YF
Sbjct: 175 FTQILDEGFIDTYRYLYPDREGAYSWWSY-RMNARAKNIGWRLDYF 219
>gi|423635487|ref|ZP_17611140.1| exodeoxyribonuclease [Bacillus cereus VD156]
gi|401278238|gb|EJR84174.1| exodeoxyribonuclease [Bacillus cereus VD156]
Length = 252
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 142/223 (63%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ ADIFCLQE K E Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGL + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLDIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ FS
Sbjct: 118 DYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + AY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPDQEDAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 132/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACVKK L + + DADIFC+QETK Q + + Y YW +
Sbjct: 2 KFVSWNVNGLRACVKKGFLAFFAETDADIFCVQETKLQAGQ----IALDLDGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P V YG+G + E GR + + + PN+ L L
Sbjct: 58 ERKGYSGTAVFTKKEPLSVRYGVGEDRTEPEGRILTLEYEDFYLVNVYTPNSQRDLARLG 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW+ +L +LD +KPVI+ GD+NV+H+ IDL N N ++GFT EER + L
Sbjct: 118 YRLEWEDRMRAYLTELDKKKPVIVCGDMNVAHQEIDLKNAKNNVGNSGFTAEERGKMTGL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+ YP+R GAYT+WSYM+K R RN G +YF
Sbjct: 178 LNSGFIDSFRYFYPEREGAYTWWSYMNKV-RERNIGWRIDYF 218
>gi|340349685|ref|ZP_08672691.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|387133768|ref|YP_006299740.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|445112647|ref|ZP_21377202.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
gi|339610439|gb|EGQ15291.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|386376616|gb|AFJ08042.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|444841476|gb|ELX68491.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
Length = 250
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 137/222 (61%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K + + DAD FCLQETK QL + F Y++YW +
Sbjct: 2 KFISWNVNGLRACVTKGFKESFAEIDADFFCLQETKMQAGQLD----IAFDGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V+YGLG +++H GR + + + PNA GLK LD
Sbjct: 58 DKKGYSGTAIFTKHKPLSVSYGLGIDEHDHEGRVITLEMEKFYLVTCYTPNAQDGLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F ++ +LD +KPVI+ GDLNV+H+ IDL NP TN ++AGF+ EER +
Sbjct: 118 YRMQWEDDFQAYVKRLDEKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTQF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR LYP++ Y++WSY K AR +N G +YF
Sbjct: 178 LGNGFIDSFRTLYPEQV-TYSWWSYRFK-AREKNAGWRIDYF 217
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423581952|ref|ZP_17558063.1| exodeoxyribonuclease [Bacillus cereus VD014]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212831|gb|EJR19572.1| exodeoxyribonuclease [Bacillus cereus VD014]
Length = 252
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 142/223 (63%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ ADIFCLQE K E Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQEGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGL + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLDIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ FS
Sbjct: 118 DYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + AY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPDQEDAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|304439168|ref|ZP_07399086.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372300|gb|EFM25888.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 254
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RA +KK ++ ++ + DI LQE K E QL E+ P Y YW +
Sbjct: 5 KFVSWNVNGIRAALKKGFMESFEELNPDIIGLQEIKLSEGQLDLEI----PGYHMYWNYA 60
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+ +P V+YG+G + ++ GR ++I PN+ GL LD
Sbjct: 61 EKKGYSGTAVFTREEPLSVSYGIGIEEHDKEGRVITLEYPEYYFITCYTPNSQRGLARLD 120
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW++ F E+L +LD KPV+L GDLNV+H IDL NP +N ++AGF+ EERD F+ L
Sbjct: 121 YRMEWEEAFLEYLNRLDEVKPVVLCGDLNVAHNEIDLKNPESNRKNAGFSDEERDKFTKL 180
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ G+TD+FR+LYP + Y++WSY + AR RN G +YF
Sbjct: 181 LEAGYTDTFRYLYPDKEDEYSWWSYF-RQARDRNIGWRIDYF 221
>gi|300726843|ref|ZP_07060273.1| exodeoxyribonuclease III [Prevotella bryantii B14]
gi|299775956|gb|EFI72536.1| exodeoxyribonuclease III [Prevotella bryantii B14]
Length = 250
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K + K DAD FC+QETK E QL ++F Y+++W +
Sbjct: 2 KLISWNVNGLRACVTKGFKETFKSFDADFFCIQETKMQEGQLD----LQFDGYESFWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNE-HYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +Y K KP VTYG+ + H GR N F + PN+ LK L+
Sbjct: 58 DKKGYSGTAIYAKTKPLNVTYGIDIDDHNHEGRVITLEYDNFFLVTVYTPNSQNELKRLN 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+K F +L KLD KP+I+ GD+NV+H+ ID+ NP TN +SAGFT EER+ + L
Sbjct: 118 YRMIWEKDFQTYLHKLDKRKPIIVCGDMNVAHQEIDIKNPKTNHKSAGFTDEEREKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR YP++ Y++WSY + AR +N G +YF
Sbjct: 178 LSNGFTDTFRFKYPEQI-TYSWWSYRFR-AREKNAGWRIDYF 217
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMNKGFMDFFTSVDADIFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+GV ++K KP V+YG+G + EH GR + + PN+ L L
Sbjct: 58 LKKGYSGVVTFSKTKPLNVSYGIGIE-EHDTEGRVITCEFDKFYLVNVYTPNSQRALARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP N ++AGF+ EER+ FS
Sbjct: 117 EYRMSWEIEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKANRKNAGFSDEEREKFSE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LL+ GF D+FRH YP + AYT+WSYM ++ R RN G
Sbjct: 177 LLNAGFIDTFRHFYPTKEKAYTWWSYMQQS-RERNIG 212
>gi|322378535|ref|ZP_08052983.1| exodeoxyribonuclease [Helicobacter suis HS1]
gi|321149049|gb|EFX43501.1| exodeoxyribonuclease [Helicobacter suis HS1]
Length = 306
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 145/247 (58%), Gaps = 6/247 (2%)
Query: 43 KATGPMNEKLSLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADI 102
+A ++ ++ K C + E ++ SWNV GLRAC++K D++++ ADI
Sbjct: 22 QAFKSLHSTINYAKFYLRCYNDTLILERKLMRLVSWNVNGLRACMQKGFCDFLEQSQADI 81
Query: 103 FCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGT-KNE 161
FC+QETK + Q F Y+ +W S+ K GY+GV +K+ P +V+YG+G +++
Sbjct: 82 FCVQETKMQQEQ----ASFCFEGYEVFWNSAQKKGYSGVLTLSKIAPLQVSYGIGIAEHD 137
Query: 162 HYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLN 221
GR N + + PNA GL L RLEW++ F L L +K V++ GDLN
Sbjct: 138 TEGRVITCEYPNFYLVNVYTPNAQRGLLRLPYRLEWERSFRGFLQNLMQKKAVVVCGDLN 197
Query: 222 VSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKT 281
V+H IDL NP +N +AGF+ ERD+F LL+ G D+FRH YP + +YT+WSY+++
Sbjct: 198 VAHNEIDLTNPQSNRYNAGFSDPERDAFRQLLNLGLIDTFRHFYPTKAESYTWWSYINQ- 256
Query: 282 ARSRNTG 288
AR++N G
Sbjct: 257 ARAKNIG 263
>gi|393911285|gb|EFO27125.2| exodeoxyribonuclease III [Loa loa]
Length = 313
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 146/240 (60%), Gaps = 15/240 (6%)
Query: 63 KKNKLGEE-PNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
KK K+G+ KI SWNVAGLRA +KK+G + KE+ DI LQETKC ++P E++
Sbjct: 47 KKKKVGKSGREIKIISWNVAGLRAWIKKDGHSILVKENPDIVALQETKC--VEVPNELQ- 103
Query: 122 KFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGL------GTKNEHYGRNCNSNIVNTF 175
Y ++ +S K+G+ GV L TK +P KVTY G GR + N +
Sbjct: 104 --NGYYSFLNTSEKSGHGGVLLLTKEEPIKVTYTFDDKSKSGLDGNGKGRIIIAEYENYY 161
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN 235
I VPN+G GL LDKR WD + + KLD KP++ +GDLNV+H+ IDLANP TN
Sbjct: 162 LINAYVPNSGRGLVNLDKRKFWDDCYFSFIKKLDLNKPIVYVGDLNVAHQEIDLANPKTN 221
Query: 236 -TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++AGFT +ER+ F+ LLD GF D FR L P++ G YT+WS M + AR +N G +YF
Sbjct: 222 YNKTAGFTDQERNDFTRLLDAGFVDVFRRLNPEKEGVYTFWSNM-RNAREKNVGWRLDYF 280
>gi|253580808|ref|ZP_04858071.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847878|gb|EES75845.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 251
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+ K + DADIFCLQETKC + Q VK++ P Y YW +
Sbjct: 2 KLISWNVNGIRACIGKGFEESFAALDADIFCLQETKCQQGQ----VKLELPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P V YG+G K++ GR + + PN+ + L+ L+
Sbjct: 58 NRRGYSGTAVFTKKEPLSVVYGIGIEKHDKEGRVITLEYEKFYLVTVYTPNSQSELRRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W++ F +L+KL KPVI GD NV+H+ IDL NP TN ++AGFT EER F +
Sbjct: 118 YRMHWEEDFLAYLLKLQESKPVICCGDFNVAHQEIDLKNPKTNRKNAGFTDEERACFGKV 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP G Y++WSY K AR +N G +YF
Sbjct: 178 LESGFIDTFRYFYPDVEGRYSWWSYRFK-AREKNAGWRIDYF 218
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 146/240 (60%), Gaps = 15/240 (6%)
Query: 63 KKNKLGEE-PNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
KK K+G+ KI SWNVAGLRA +KK+G + KE+ DI LQETKC ++P E++
Sbjct: 40 KKKKVGKSGREIKIISWNVAGLRAWIKKDGHSILVKENPDIVALQETKC--VEVPNELQ- 96
Query: 122 KFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGL------GTKNEHYGRNCNSNIVNTF 175
Y ++ +S K+G+ GV L TK +P KVTY G GR + N +
Sbjct: 97 --NGYYSFLNTSEKSGHGGVLLLTKEEPIKVTYTFDDKSKSGLDGNGKGRIIIAEYENYY 154
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN 235
I VPN+G GL LDKR WD + + KLD KP++ +GDLNV+H+ IDLANP TN
Sbjct: 155 LINAYVPNSGRGLVNLDKRKFWDDCYFSFIKKLDLNKPIVYVGDLNVAHQEIDLANPKTN 214
Query: 236 -TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++AGFT +ER+ F+ LLD GF D FR L P++ G YT+WS M + AR +N G +YF
Sbjct: 215 YNKTAGFTDQERNDFTRLLDAGFVDVFRRLNPEKEGVYTFWSNM-RNAREKNVGWRLDYF 273
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK LD + DAD FCLQETK E Q + + Y YW +
Sbjct: 2 KFISWNVNGLRAAVKKGFLDVFNQLDADFFCLQETKLQEGQ----IDLPLEGYTQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K V YGLG + +H GR + + PNA + LK +D
Sbjct: 58 EKKGYSGTAIFAKQPALSVQYGLGIEELDHEGRLITLEYPEFYLVTCYTPNAQSELKRID 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL+W+ F E+L +LD +KPVI+ GDLNV+H+ IDL N N AGF+ EER++F+ L
Sbjct: 118 FRLQWEAAFREYLHQLDEKKPVIICGDLNVAHQNIDLKNWRPNRGKAGFSDEERNAFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD+FR+LYP+ TG Y++WSY AR N G +YF
Sbjct: 178 LNTGFTDTFRYLYPETTGVYSWWSYRFH-ARENNAGWRIDYF 218
>gi|423458084|ref|ZP_17434881.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
gi|401148468|gb|EJQ55961.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
Length = 252
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 144/225 (64%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ ADIFCLQE K + Q+ PE Y YW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESSADIFCLQEIKLQDGQIDLN-----PEGYYAYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFSKKEPLAVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R++W+ F ++ +LD +KPV+ GDLNV+HK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMKWEDDFRAYIKQLDKKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ +L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TRILEEGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|315641336|ref|ZP_07896412.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
gi|315482909|gb|EFU73429.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
Length = 252
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 135/223 (60%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK +D + DAD FCLQETK Q ++M P Y YW +
Sbjct: 2 KLISWNVNGLRAVMKKNFMDVFTQLDADFFCLQETKLQAGQ----IEMDLPGYTQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G ++ K + V YG+G K EH GR + + PN+ LK L
Sbjct: 58 VKKGYSGTAIFAKEPADNVFYGIG-KEEHDQEGRVITLEYPQFYLVTCYTPNSQNELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+EW+ F +L +L ++PVI+ GDLNV+H+ IDL N TN ++AGFT EER F++
Sbjct: 117 DYRMEWEDDFVAYLDELKKDRPVIVCGDLNVAHQEIDLKNWKTNQKNAGFTNEERAKFTA 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD G+TD+FRH YP+ TGAY++WSY AR N G +YF
Sbjct: 177 LLDHGYTDTFRHFYPELTGAYSWWSY-RFNARKNNAGWRIDYF 218
>gi|392531481|ref|ZP_10278618.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum ATCC 35586]
Length = 251
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 140/223 (62%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK +D + DAD FCLQETK Q+ E+ P Y YW +
Sbjct: 2 KLISWNVNGLRAVVKKGFIDIFNQLDADFFCLQETKLQAGQIDFEL----PGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G ++TK +P++V YGLG K EH GR + + + + PN+ LK L
Sbjct: 58 EKKGYSGTAIFTKHEPDEVFYGLG-KEEHDQEGRVITLSYPDYYVVTCYTPNSQNELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W++ F +L +LDAEKPVI+ GDLNV+H+ ID+ N TN ++AGFT EER F+
Sbjct: 117 NYRMTWEEDFLAYLNQLDAEKPVIVCGDLNVAHENIDIKNWKTNRKNAGFTDEERGKFTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ G+ D+FR+ YP+ GAY++WSY AR+ N G +YF
Sbjct: 177 FLENGYIDTFRYFYPELEGAYSWWSYRF-NARANNAGWRIDYF 218
>gi|421145619|ref|ZP_15605476.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
gi|395487984|gb|EJG08882.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
Length = 253
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK LDY +++ADIFCLQETK QL E+K Y YW +
Sbjct: 2 KLISWNVNGIRAAIKKGFLDYFNEQNADIFCLQETKLSAGQLDLELK----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + ++ GR + + PN+ L LD
Sbjct: 58 EKKGYSGTAIFTKQEPLTVSYGLGIEEHDKEGRVITLEFEKFYMVTVYTPNSKDKLLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L L+ +K V++ GDLNV+H+ IDL NP TN R+AGFT EER F+ L
Sbjct: 118 YRMTWEDEFRKYLKNLEKKKAVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP Y++WSY + AR N G +YF
Sbjct: 178 LDSGFIDTFRYFYPNLEQVYSWWSYRGR-ARENNAGWRIDYF 218
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 136/224 (60%), Gaps = 6/224 (2%)
Query: 73 FKIASWNVAGLRACVKKEGL-DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+ +WNV G+R+ + K L +Y+ + DI CLQETK Q+ ++ M+F Y YW
Sbjct: 1 MKLTTWNVNGIRSVLNKGALQEYVLEAQPDILCLQETKAQPEQV--DLGMEFAGYHAYWN 58
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
S+ K GY+G ++TK +P V YGLG + ++ GR + + + + PNA L
Sbjct: 59 SAVKKGYSGTAIFTKEEPISVQYGLGIEEHDQEGRVITAEYADYYLVTVYTPNAKRDLTR 118
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L R W+ F + KL+ KPVI GDLNV+HK IDLANP TNT++AGFT EER+ F
Sbjct: 119 LSYRQVWEDDFLAFIKKLEETKPVIFCGDLNVAHKEIDLANPKTNTKNAGFTKEEREKFD 178
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+++ G D+FR YP+ GAYT+WSYM AR+RN G +YF
Sbjct: 179 QIVENGLVDAFRFRYPEAVGAYTWWSYMGG-ARARNIGWRIDYF 221
>gi|257420126|ref|ZP_05597120.1| exonuclease III [Enterococcus faecalis T11]
gi|257161954|gb|EEU91914.1| exonuclease III [Enterococcus faecalis T11]
Length = 251
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFSELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGVEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|300860584|ref|ZP_07106671.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|428767881|ref|YP_007153992.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|300849623|gb|EFK77373.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|427186054|emb|CCO73278.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
Length = 251
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK LD + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFLDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSYRF-NARKNNAGWRIDYF 218
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267630|ref|YP_005120342.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|386737557|ref|YP_006210738.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|421510574|ref|ZP_15957465.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|364513430|gb|AEW56829.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|384387409|gb|AFH85070.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|401819394|gb|EJT18573.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
Length = 252
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 144/223 (64%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA + K G L+Y+++ +ADIFCLQE K E Q+ V+ Y TYW
Sbjct: 2 KFISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQEGQIDLNVE----GYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R++W+ F ++ +LD +K V+ GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 118 EYRMKWEDDFRAYIKRLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|29377212|ref|NP_816366.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227554220|ref|ZP_03984267.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|422714823|ref|ZP_16771549.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
gi|422717962|ref|ZP_16774635.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|29344678|gb|AAO82436.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227176667|gb|EEI57639.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|315573773|gb|EFU85964.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|315580287|gb|EFU92478.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
Length = 251
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWSYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|256763359|ref|ZP_05503939.1| exonuclease III [Enterococcus faecalis T3]
gi|256684610|gb|EEU24305.1| exonuclease III [Enterococcus faecalis T3]
Length = 257
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 8 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 63
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 64 EKKGYSGTAIFAKEEALSVRYGLGIESHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 123
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 124 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTEL 183
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 184 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 224
>gi|255974862|ref|ZP_05425448.1| exonuclease III [Enterococcus faecalis T2]
gi|255967734|gb|EET98356.1| exonuclease III [Enterococcus faecalis T2]
Length = 257
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 8 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 63
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 64 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 123
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 124 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTEL 183
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 184 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 224
>gi|256961018|ref|ZP_05565189.1| exonuclease III [Enterococcus faecalis Merz96]
gi|293384592|ref|ZP_06630458.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|293386821|ref|ZP_06631392.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|312906418|ref|ZP_07765426.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312979423|ref|ZP_07791111.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|422701088|ref|ZP_16758929.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
gi|256951514|gb|EEU68146.1| exonuclease III [Enterococcus faecalis Merz96]
gi|291078138|gb|EFE15502.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|291083824|gb|EFE20787.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|310627572|gb|EFQ10855.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|311287794|gb|EFQ66350.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|315170467|gb|EFU14484.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
Length = 251
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGVEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|218898840|ref|YP_002447251.1| exodeoxyribonuclease III [Bacillus cereus G9842]
gi|218542018|gb|ACK94412.1| exodeoxyribonuclease III [Bacillus cereus G9842]
Length = 252
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 142/223 (63%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKVQSGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P VTYGL + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFTKKEPLSVTYGLEIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 118 DYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LY + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYSDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|430362273|ref|ZP_19427003.1| exonuclease III [Enterococcus faecalis OG1X]
gi|430366851|ref|ZP_19427621.1| exonuclease III [Enterococcus faecalis M7]
gi|429512184|gb|ELA01799.1| exonuclease III [Enterococcus faecalis OG1X]
gi|429516857|gb|ELA06332.1| exonuclease III [Enterococcus faecalis M7]
Length = 271
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 22 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 77
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 78 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 137
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 138 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTEL 197
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 198 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 238
>gi|422694022|ref|ZP_16752027.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
gi|315148697|gb|EFT92713.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
Length = 251
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIESHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|229544881|ref|ZP_04433606.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256963841|ref|ZP_05568012.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|257081702|ref|ZP_05576063.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|257087702|ref|ZP_05582063.1| exonuclease III [Enterococcus faecalis D6]
gi|257416904|ref|ZP_05593898.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257421653|ref|ZP_05598643.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|307271787|ref|ZP_07553058.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|307278718|ref|ZP_07559785.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|307288645|ref|ZP_07568626.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|384514063|ref|YP_005709156.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|422703204|ref|ZP_16761029.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|422707239|ref|ZP_16764936.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|422720136|ref|ZP_16776759.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|422724491|ref|ZP_16780967.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|422734487|ref|ZP_16790776.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|422741447|ref|ZP_16795472.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|424672083|ref|ZP_18109064.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
gi|229309982|gb|EEN75969.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256954337|gb|EEU70969.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|256989732|gb|EEU77034.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|256995732|gb|EEU83034.1| exonuclease III [Enterococcus faecalis D6]
gi|257158732|gb|EEU88692.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257163477|gb|EEU93437.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|295113675|emb|CBL32312.1| exodeoxyribonuclease III [Enterococcus sp. 7L76]
gi|306500399|gb|EFM69735.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|306504579|gb|EFM73782.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|306511665|gb|EFM80664.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|315025498|gb|EFT37430.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|315032586|gb|EFT44518.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|315143871|gb|EFT87887.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|315155597|gb|EFT99613.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|315165304|gb|EFU09321.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|315168718|gb|EFU12735.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|327535952|gb|AEA94786.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|402357128|gb|EJU91842.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
Length = 251
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|75759849|ref|ZP_00739924.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902244|ref|ZP_04066404.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|228966664|ref|ZP_04127710.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402558959|ref|YP_006601683.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|423359274|ref|ZP_17336777.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|423561854|ref|ZP_17538130.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|434376797|ref|YP_006611441.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
gi|74492665|gb|EAO55806.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228793040|gb|EEM40596.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228857359|gb|EEN01859.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|401085146|gb|EJP93392.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|401202111|gb|EJR08976.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|401787611|gb|AFQ13650.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|401875354|gb|AFQ27521.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
Length = 252
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 142/223 (63%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q + + Y TYW
Sbjct: 2 KLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQ----IDLNLEGYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P VTYGL + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFTKKEPLSVTYGLEIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ F ++ +LD +KPVI GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 118 DYRMKWEDDFRSYIKRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LY + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYSDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|257079900|ref|ZP_05574261.1| exonuclease III [Enterococcus faecalis JH1]
gi|294779916|ref|ZP_06745298.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|307269235|ref|ZP_07550589.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|397700923|ref|YP_006538711.1| exodeoxyribonuclease III [Enterococcus faecalis D32]
gi|422866830|ref|ZP_16913440.1| exodeoxyribonuclease III [Enterococcus faecalis TX1467]
gi|256987930|gb|EEU75232.1| exonuclease III [Enterococcus faecalis JH1]
gi|294453028|gb|EFG21448.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|306514454|gb|EFM83015.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|329578016|gb|EGG59431.1| exodeoxyribonuclease III [Enterococcus faecalis TX1467]
gi|397337562|gb|AFO45234.1| exodeoxyribonuclease III [Enterococcus faecalis D32]
Length = 251
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRMITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 140/221 (63%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K LDY ++ DADIFC+QETK E Q+ ++ EY+ YW +
Sbjct: 2 KLISWNVNGLRACVNKGFLDYFREMDADIFCVQETKLQEGQIDLDLG---EEYEQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GY+G ++TK KP V YG+ E GR + F + PN+ L L++
Sbjct: 59 LKKGYSGTAVFTKKKPLSVRYGIEENEEPEGRILTLEFESFFLVNVYTPNSKRDLSRLEE 118
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
RLEW++ F +L KLDA KPVI+ GDLNV+H+ IDL N +N ++GFT EER+ + L
Sbjct: 119 RLEWEERFRFYLQKLDACKPVIVCGDLNVAHQVIDLKNSKSNHGNSGFTTEEREKMTILQ 178
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
D GFTD+FRH YP +T AYT+WSYM K R RN G +YF
Sbjct: 179 DAGFTDTFRHFYPDQTDAYTWWSYMPK-VRERNIGWRIDYF 218
>gi|379726888|ref|YP_005319073.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
gi|376317791|dbj|BAL61578.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
Length = 254
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FC+QETK + Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAIVKKNFIDVFNELDADFFCVQETKLQDGQ----IDLELPGYHQYWDYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++ K KV YGL + ++ GR N + + PN+ LK L
Sbjct: 58 IKKGYSGVAVFAKKAAQKVYYGLNMEEHDQEGRLLTLEYPNFYLVNCYTPNSQPELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L+KL ++KPVIL GDLNV+H+PIDL N TN SAGF+ EER+ + L
Sbjct: 118 YRMTWENAFRDYLIKLKSKKPVILCGDLNVAHQPIDLKNWRTNQHSAGFSPEEREKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D++R+ YP + G Y++WSY AR N G +YF
Sbjct: 178 LDNGFIDTYRYFYPDKEGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|329769257|ref|ZP_08260674.1| exodeoxyribonuclease [Gemella sanguinis M325]
gi|328839251|gb|EGF88834.1| exodeoxyribonuclease [Gemella sanguinis M325]
Length = 254
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 139/223 (62%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K S+NV GLRA V K + KK DAD FCLQETK QL ++F Y +Y+ +
Sbjct: 2 KCISFNVNGLRAIVGKNFEEDFKKLDADFFCLQETKMQAGQLD----LQFDGYYSYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ GY+G +YTK KP VTYG+G + EH GR N F+I PN+G+ LK L
Sbjct: 58 ERKGYSGTAIYTKYKPLNVTYGIGIE-EHDTEGRVITLEYDNFFFITVYTPNSGSELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W+ F ++L+ L+ +K VI+ GDLNV+H IDL NP TN ++AGFT EER+ F+
Sbjct: 117 EYRMSWEDDFKDYLLTLNKDKGVIVCGDLNVAHTEIDLKNPKTNVKNAGFTPEEREKFTK 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF D+FR+ P TGAY++WSY AR N+G +YF
Sbjct: 177 LLDAGFIDTFRYFNPDLTGAYSWWSYRF-NARKNNSGWRIDYF 218
>gi|255971866|ref|ZP_05422452.1| exonuclease III [Enterococcus faecalis T1]
gi|255962884|gb|EET95360.1| exonuclease III [Enterococcus faecalis T1]
Length = 257
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 8 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 63
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 64 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 123
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 124 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTEL 183
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 184 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 224
>gi|229549148|ref|ZP_04437873.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256957962|ref|ZP_05562133.1| exonuclease III [Enterococcus faecalis DS5]
gi|257084299|ref|ZP_05578660.1| exonuclease III [Enterococcus faecalis Fly1]
gi|257090921|ref|ZP_05585282.1| exonuclease III [Enterococcus faecalis CH188]
gi|307276972|ref|ZP_07558082.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|312902560|ref|ZP_07761766.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|312951910|ref|ZP_07770798.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|384519525|ref|YP_005706830.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|421513270|ref|ZP_15960049.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
gi|422687253|ref|ZP_16745435.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|422690983|ref|ZP_16749024.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|422710887|ref|ZP_16767822.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|422725430|ref|ZP_16781891.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|229305702|gb|EEN71698.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256948458|gb|EEU65090.1| exonuclease III [Enterococcus faecalis DS5]
gi|256992329|gb|EEU79631.1| exonuclease III [Enterococcus faecalis Fly1]
gi|256999733|gb|EEU86253.1| exonuclease III [Enterococcus faecalis CH188]
gi|306506395|gb|EFM75555.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|310630099|gb|EFQ13382.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|310634230|gb|EFQ17513.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|315035107|gb|EFT47039.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|315154300|gb|EFT98316.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|315159607|gb|EFU03624.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|315579630|gb|EFU91821.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|323481658|gb|ADX81097.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|401673644|gb|EJS80023.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
Length = 251
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K LD + DAD FCLQETK Q +++ P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLDVFHELDADFFCLQETKLQAGQ----IELDLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K V+YG+G ++ GR F + PN+ LK LD
Sbjct: 58 ERKGYSGTAIFAKEPALNVSYGMGIDLHDQEGRLITLEYPEFFLVTCYTPNSQNELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL+W++ F+ +L +L +KPVI+ GDLNV+H+ IDL N TN ++AGFT+EER +FS L
Sbjct: 118 YRLQWEEAFYHYLEELKKQKPVIVCGDLNVAHQEIDLKNWKTNQKNAGFTMEERTAFSHL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+ YP++TG Y++WSY AR N G +YF
Sbjct: 178 LANGFIDTFRYFYPEQTGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|389816348|ref|ZP_10207511.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
gi|388465341|gb|EIM07660.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
Length = 251
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK +D+ + DAD+FCLQE K E Q ++M P Y TYW +
Sbjct: 2 KLISWNVNGLRAVMKKGFMDFFTEADADVFCLQEIKLQEGQ----IEMDLPGYYTYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P + YGLG++ ++ GR + + PN+ GL LD
Sbjct: 58 HKKGYSGTAIFTKEEPLSIQYGLGSEEHDTEGRMIALEFDGHYVVTVYTPNSQHGLLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W++ + LD +KPVIL GDLNV+H+ IDL NP N +++GFT +ER +
Sbjct: 118 YRLLWEEAILSFVKTLDNQKPVILCGDLNVAHEEIDLKNPKANKKNSGFTPDERGKMTQF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRH +P TG Y++WSY S R +N G +YF
Sbjct: 178 LTDGFVDTFRHFHPTETGFYSWWSYRS-NCREKNVGWRIDYF 218
>gi|256854033|ref|ZP_05559398.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|307290261|ref|ZP_07570177.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|422684833|ref|ZP_16743058.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
gi|256710976|gb|EEU26019.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|306498682|gb|EFM68183.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|315030444|gb|EFT42376.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
Length = 251
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIETHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|422731891|ref|ZP_16788239.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
gi|315162099|gb|EFU06116.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
Length = 251
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTGL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 132/223 (59%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ +WNV GLRAC+ K + ++K DADI +QETK Q FP Y YW S
Sbjct: 1 MKLVTWNVNGLRACMNKGFKESMEKLDADIISIQETKMQREQ----ASFDFPGYYEYWNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++++KP VTYGLG + ++ GR + + + + PN+ L L
Sbjct: 57 AVKKGYSGTAIFSRIKPLSVTYGLGIEEHDQEGRVITAEYDDFYLVNVYTPNSQRELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R+ W+ F + L +K I+ GD+NV+H+PIDL NP +N +AGF+ EER +
Sbjct: 117 SYRMAWEDAFQAYCEDLSKKKTTIVCGDMNVAHEPIDLKNPDSNHHNAGFSDEERQKLDA 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L +GF DSFR LYP R GAYT+WSYM K AR RN G +YF
Sbjct: 177 FLARGFVDSFRMLYPDREGAYTWWSYMFK-ARERNAGWRIDYF 218
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 132/223 (59%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ +WNV GLRAC+ K + ++K DADI +QETK Q FP Y YW S
Sbjct: 8 MKLVTWNVNGLRACMNKGFKESMEKLDADIISIQETKMQREQ----ASFDFPGYYEYWNS 63
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++++KP VTYGLG + ++ GR + + + + PN+ L L
Sbjct: 64 AVKKGYSGTAIFSRIKPLSVTYGLGIEEHDQEGRVITAEYDDFYLVNVYTPNSQRELARL 123
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R+ W+ F + L +K I+ GD+NV+H+PIDL NP +N +AGF+ EER +
Sbjct: 124 SYRMAWEDAFQAYCEDLSKKKTTIVCGDMNVAHEPIDLKNPDSNHHNAGFSDEERQKLDA 183
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L +GF DSFR LYP R GAYT+WSYM K AR RN G +YF
Sbjct: 184 FLARGFVDSFRMLYPDREGAYTWWSYMFK-ARERNAGWRIDYF 225
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| exodeoxyribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC K +D+ DADIFC+QE+K E QL + P Y YW +
Sbjct: 8 KLISWNVNGIRACAGKGFMDFFNSIDADIFCIQESKMQEGQLT----LDMPGYYQYWNYA 63
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK K T G+G +++H GR N + + PN+ L LD
Sbjct: 64 DKKGYSGTAIFTKEKSLSETKGIGIDEHDHEGRVITLEYENFYMVTVYTPNSQNELARLD 123
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L KL+ KPVI+ GD+NV+H IDL NP TN ++AGFT EER+ + L
Sbjct: 124 YRMKWEDDFRAYLKKLEENKPVIVCGDMNVAHNEIDLKNPKTNRKNAGFTDEEREKMTVL 183
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP + Y++WSY K AR +N G +YF
Sbjct: 184 LDDGFIDTFRYFYPDQENIYSWWSYRFK-AREKNAGWRIDYF 224
>gi|270290148|ref|ZP_06196374.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|418069863|ref|ZP_12707140.1| exonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281685|gb|EFA27517.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|357536394|gb|EHJ20425.1| exonuclease III [Pediococcus acidilactici MA18/5M]
Length = 251
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VK LD + DADIFC+QETK E Q + + P Y YW +
Sbjct: 2 KLISWNVNGLRAAVKHGFLDVFNELDADIFCVQETKLQEGQ----IDLDLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + + GR F + PN+ L+ LD
Sbjct: 58 EKKGYSGTAVFTKREPVAVSYGLGIPEFDQEGRVITLEYEEFFLVTCYTPNSQPELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WD F ++ +L KPVI GDLNV+H+ IDL N TN +AGFT EER F+ L
Sbjct: 118 YRMNWDDAFRAYVKQLADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD++R+ YP + G Y++WSY AR+ N G +YF
Sbjct: 178 LQSGFTDTYRYFYPDKEGVYSWWSYRF-NARANNAGWRIDYF 218
>gi|256616763|ref|ZP_05473609.1| exonuclease III [Enterococcus faecalis ATCC 4200]
gi|256596290|gb|EEU15466.1| exonuclease III [Enterococcus faecalis ATCC 4200]
Length = 251
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWN+ GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNINGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 139/224 (62%), Gaps = 6/224 (2%)
Query: 73 FKIASWNVAGLRACVKKEGL-DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K+A+WNV G+R+ + K L +Y+ + + DI CLQETK + Q+ E+ M+F EY+ ++
Sbjct: 1 MKLATWNVNGIRSVLNKGALQEYVLESNPDILCLQETKAQQDQV--ELGMEFSEYEVFFN 58
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
S+ K GY+G ++TK KP V YG+G + ++ GR + + + PNA L
Sbjct: 59 SAVKKGYSGTAIFTKEKPLSVEYGIGIEEHDQEGRVITAEYEKFYLVTVYTPNAKRDLSR 118
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L+ R W+ F + KL+ KPVI GDLNV+HK IDLANP TNT +AGFT EER F
Sbjct: 119 LEYRQVWEDDFLAFIKKLEETKPVIFCGDLNVAHKEIDLANPKTNTMNAGFTKEERAKFD 178
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+++ D+FR+LYP GAY++WSYM AR+RN G +YF
Sbjct: 179 QVVNNDLVDAFRYLYPDTLGAYSWWSYMGG-ARARNVGWRIDYF 221
>gi|227519480|ref|ZP_03949529.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|422727704|ref|ZP_16784135.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|424677217|ref|ZP_18114076.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|424679202|ref|ZP_18116030.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|424682483|ref|ZP_18119253.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|424686042|ref|ZP_18122715.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|424689047|ref|ZP_18125641.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|424692659|ref|ZP_18129142.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|424695850|ref|ZP_18132222.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|424699041|ref|ZP_18135281.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|424702698|ref|ZP_18138845.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|424705840|ref|ZP_18141862.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|424716100|ref|ZP_18145417.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|424719240|ref|ZP_18148416.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|424724426|ref|ZP_18153372.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|424726233|ref|ZP_18154907.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|424734642|ref|ZP_18163137.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|424746779|ref|ZP_18175000.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
gi|227073092|gb|EEI11055.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|315151770|gb|EFT95786.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|402355247|gb|EJU90024.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|402357580|gb|EJU92285.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|402367516|gb|EJV01856.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|402368116|gb|EJV02441.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|402369475|gb|EJV03753.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|402377670|gb|EJV11567.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|402377770|gb|EJV11662.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|402379084|gb|EJV12904.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|402386727|gb|EJV20225.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|402388863|gb|EJV22288.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|402389270|gb|EJV22670.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|402395163|gb|EJV28284.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|402396815|gb|EJV29860.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|402400257|gb|EJV33096.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|402406913|gb|EJV39456.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|402409191|gb|EJV41626.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
Length = 251
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFIVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFSAYLNELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA K + I+ DAD CLQETK QL ++ P Y TYW +
Sbjct: 2 KFISWNVNGLRAVFGKGFPEIIQGLDADFVCLQETKMQAGQLEADL----PSYHTYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YT+ +P V+YG+G ++ GR + + + VPN+ L+ L
Sbjct: 58 EKKGYSGTAIYTRHEPLSVSYGIGIDHHDTEGRVITLEYTDFYLVTVYVPNSQDDLRRLG 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +LV+LD +KPVI+ GDLNV+H+ IDL NP +N R+AGFT EER F L
Sbjct: 118 YRMTWEDDFRAYLVELDKKKPVIVCGDLNVAHQEIDLKNPKSNRRNAGFTDEERGKFQEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ +P + Y++WSY K AR RN+G +YF
Sbjct: 178 LDAGFIDTFRYFHPDQRDIYSWWSYRFK-ARERNSGWRIDYF 218
>gi|313232077|emb|CBY09188.1| unnamed protein product [Oikopleura dioica]
Length = 392
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 137/228 (60%), Gaps = 8/228 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPP-EVKMKFPE--YKTY 129
F+I +WNVAGL AC+KK+ +K D DI CLQETK + PP E+ + E Y+ Y
Sbjct: 131 FRIVTWNVAGLYACIKKDFCKAVKTLDCDILCLQETKLSLKKPPPAEIAEQLKEWKYRNY 190
Query: 130 WLSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
S KAGY+G + +K KP V G+G TK++ +GR+C + F + VPN+G GL
Sbjct: 191 ANSEGKAGYSGTAILSKSKPISVQRGIGKTKHDDFGRSCTAEFEKFFLVTSYVPNSGRGL 250
Query: 189 KTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTIEER 246
LD R EW+ +L KL+ +KPVI GDLNV+H IDL N +N +SAG+T E
Sbjct: 251 VNLDYRTNEWESDLRNYLTKLNKDKPVIYCGDLNVAHTAIDLKNDKSNYNKSAGYTQAEI 310
Query: 247 DSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
D LL+ G+ D++R LYP YT+WSYM ARS+N G +YF
Sbjct: 311 DELEKLLELGYVDAYRKLYPAEEDCYTFWSYMG-GARSKNVGWRLDYF 357
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|423550511|ref|ZP_17526838.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|401190127|gb|EJQ97177.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
Length = 252
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 144/223 (64%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA + K G L+Y+++ +ADIFC+QE K E Q+ V+ Y TYW
Sbjct: 2 KFISWNVNGLRAVIAKGGFLEYLEESNADIFCVQEIKLQEGQIDLNVE----GYYTYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K +P VTYGLG + ++ GR + + I PN+ GL+ L
Sbjct: 58 AVKKGYSGTAIFSKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNSKRGLERL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R++W+ F ++ +LD +K V+ GDLNV+HK IDL NP +N ++ GF+ EER+ F+
Sbjct: 118 EYRMKWEDDFRAYIKRLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTC 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 178 ILEEGFIDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|424756722|ref|ZP_18184524.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
gi|402408116|gb|EJV40605.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
Length = 251
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFIVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFSAYLNELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTDL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LD +K+ +ADIFC+QE+K E Q + + EY YW +
Sbjct: 3 KLISWNVNGLRACVKKGFLDILKESNADIFCIQESKLQEGQ----IDLNLEEYYDYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K KP ++ G+G + ++ GR + + PN+ L +D
Sbjct: 59 EKKGYSGTAVFSKEKPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVYTPNSQQKLARID 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L +L+ +K VI+ GDLNV+HK IDL NP N +AGF+ EER+ F L
Sbjct: 119 YRMAWENDFRDYLNELNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKFDEL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D++R+ YP + GAY++WSY AR+ N G +YF
Sbjct: 179 LKSGFIDTYRYFYPDKEGAYSWWSYRF-NARANNAGWRIDYF 219
>gi|304385589|ref|ZP_07367933.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328093|gb|EFL95315.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VK LD + DADIFC+QETK E Q + + P Y YW +
Sbjct: 2 KLISWNVNGLRAAVKHGFLDVFNELDADIFCVQETKLQEGQ----IDLDLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YGLG + + GR F + PN+ L+ LD
Sbjct: 58 EKKGYSGTAVFTKREPVAVSYGLGIPEFDQEGRVITLEYEKFFLVTCYTPNSQPELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WD F ++ +L KPVI GDLNV+H+ IDL N TN +AGFT EER F+ L
Sbjct: 118 YRMNWDDAFRAYVKQLADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD++R+ YP + G Y++WSY AR+ N G +YF
Sbjct: 178 LQSGFTDTYRYFYPDKEGVYSWWSYRF-NARANNAGWRIDYF 218
>gi|340352974|ref|ZP_08675807.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
gi|339611994|gb|EGQ16810.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
Length = 250
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 137/222 (61%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K + + +AD FCLQETK E QL + F Y++YW +
Sbjct: 2 KFISWNVNGLRACVTKGFKESFVELNADFFCLQETKMQEGQLD----ITFDGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V YGL +++H GR + F + PN+ GLK LD
Sbjct: 58 DKKGYSGTAIFTKHKPINVHYGLDIDEHDHEGRVITLEMETFFLVTCYTPNSQDGLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F ++ +LD +KPV++ GDLNV+H+ IDL NP TN ++AGFT EER +
Sbjct: 118 YRMKWEDDFQAYIKQLDKKKPVVICGDLNVAHEEIDLKNPKTNRKNAGFTDEERAKMTQF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR LYP++ Y++WSY K AR +N G +YF
Sbjct: 178 LNNGFIDSFRTLYPEQI-TYSWWSYRFK-AREKNAGWRIDYF 217
>gi|373501432|ref|ZP_09591789.1| exodeoxyribonuclease [Prevotella micans F0438]
gi|371949088|gb|EHO66962.1| exodeoxyribonuclease [Prevotella micans F0438]
Length = 250
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K ++ + AD FCLQETK QL + FP Y++YW +
Sbjct: 2 KFISWNVNGLRAVVGKGFVESFETFGADFFCLQETKMQAGQL----DISFPGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VTYG+ +++H GR + F + PN+ GL+ LD
Sbjct: 58 EKKGYSGTAIFTKYKPLSVTYGMNIDEHDHEGRIITLEMEQFFLVTVYTPNSQDGLRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L LD KPVI+ GD+NV+H+ IDL NP N R+AGFT EER ++L
Sbjct: 118 YRMQWESDFLAYLTSLDCRKPVIVCGDMNVAHEEIDLKNPQNNRRNAGFTDEERQKMTTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR L+P+ Y++WSY K AR +N G +YF
Sbjct: 178 LASGFVDTFRTLHPEEQ-KYSWWSYRFK-AREKNVGWRIDYF 217
>gi|320528523|ref|ZP_08029680.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
gi|320131109|gb|EFW23682.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
Length = 251
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 136/221 (61%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +KK D+ ++DAD F LQETK QL E MKF Y Y S+
Sbjct: 2 KFISWNVNGLRAAMKKGFADFFHEQDADFFALQETKMQPDQL--EDAMKFEGYHMYMNSA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
+ GY+G +YTK +P VTY + GR + +++ VPN+ GL L
Sbjct: 60 ERKGYSGTLIYTKHEPLSVTYEIEGDVTKEGRVITLEYPDFYFVCAYVPNSKDGLLRLPY 119
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
R+EW+++ +HL++LD +KPVI GDLNV+H+ IDL NP TN ++ GF+ EER + + LL
Sbjct: 120 RIEWEEMLRKHLMELDKKKPVIYTGDLNVAHEEIDLKNPATNHKNPGFSDEERAAMTKLL 179
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
D GF+D+FR LYP T +++WSY K AR RN G +YF
Sbjct: 180 DSGFSDTFRELYPD-TQKFSWWSYRMK-ARERNVGWRIDYF 218
>gi|335045714|ref|ZP_08538737.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759500|gb|EGL37057.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 251
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 140/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA + K ++ +K DADIFCLQETK Q +++ P Y YW +
Sbjct: 3 KLISWNVNGLRAVMGKNFMEDFRKLDADIFCLQETKLQAGQ----IELDLPGYFQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YG+G + ++ GR + + + I VPN+ LK L
Sbjct: 59 VKKGYSGTAIFTKEEPISVSYGIGVEEHDQEGRVITAEFKDFYLITVYVPNSQGELKRLP 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+E++ F +++ L+ +KPV+ GDLNV+H+ IDL NP TN SAGF+ EER FS +
Sbjct: 119 YRMEFEDAFLSYILNLEKKKPVVYCGDLNVAHEEIDLKNPDTNHLSAGFSDEERAKFSRV 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD G+ DSFR+ YP++ Y++WSY +K AR RN G +YF
Sbjct: 179 LDSGYLDSFRYFYPEKE-EYSWWSYRTK-ARERNVGWRIDYF 218
>gi|170582912|ref|XP_001896345.1| exodeoxyribonuclease III family protein [Brugia malayi]
gi|158596475|gb|EDP34813.1| exodeoxyribonuclease III family protein [Brugia malayi]
Length = 314
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 139/229 (60%), Gaps = 14/229 (6%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
KI SWNVAGLRA +KK G + +E+ DI LQETKC +P E++ Y T+ +
Sbjct: 59 IKIISWNVAGLRALIKKNGHSVLVEENPDIIALQETKC--VDVPSELQ---NGYHTFLNA 113
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNE------HYGRNCNSNIVNTFYIRKNVPNAGA 186
S K+G+ GV L TK +P KVTY K++ GR + + + I VPN+G
Sbjct: 114 SEKSGHGGVLLLTKEEPIKVTYSFDDKSKCDIDGNGKGRIIIAEYESYYLINAYVPNSGR 173
Query: 187 GLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTIEE 245
GL LDKR WD + + KLD KPV+ +GDLNV+H+ IDLANP TN ++AGFT +E
Sbjct: 174 GLVNLDKRKIWDDYYLTFIKKLDLSKPVVYVGDLNVAHQEIDLANPKTNRNKTAGFTDQE 233
Query: 246 RDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+ F+ LLD GF D FR L P + GAYT+WS M AR +N G +YF
Sbjct: 234 RNDFTRLLDAGFVDVFRRLNPDKEGAYTFWSNMH-NAREKNVGWRLDYF 281
>gi|319935137|ref|ZP_08009577.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
gi|319809962|gb|EFW06345.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
Length = 252
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 135/221 (61%), Gaps = 8/221 (3%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
SWNV GLRAC+KK D+ K DADIF +QETK Q + ++F Y +Y+ +
Sbjct: 3 FVSWNVNGLRACLKKGFEDFFKDVDADIFAIQETKLQRNQ----IDLEFEGYTSYYNDAI 58
Query: 135 KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GY+GV +YTK +P V YG+G + ++ GR +++ PN+ L+ LD
Sbjct: 59 KKGYSGVAIYTKKEPMNVIYGMGIEEHDQEGRLITLEFEKFYFVAVYTPNSKRELERLDY 118
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
R W+ F +H+ KL KPV+L GDLNV+H IDL N TN ++AGFT +ER FS LL
Sbjct: 119 RQVWEDAFRQHVQKLKESKPVVLCGDLNVAHNEIDLKNDKTNHKNAGFTDQERAKFSELL 178
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ GF D+FR+ YP+ T Y++WSYM K AR +N G +YF
Sbjct: 179 NSGFIDTFRYKYPE-TEMYSWWSYMFK-AREKNAGWRIDYF 217
>gi|297618884|ref|YP_003706989.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
gi|297377861|gb|ADI36016.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
Length = 249
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G++A ++K +D++K+E+ DI CLQE K T P ++ + EYK YW +
Sbjct: 1 MKLISWNVNGIKAILQKGFVDFVKQENPDILCLQEIK---TNSPSQI-LDLSEYKQYWNT 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TK KP +TYG+ + GR + N + + PN+ GL LD
Sbjct: 57 ASKKGYSGTAIFTKQKPKNITYGMDNFPDEEGRVITAEYDNYYLVNVYTPNSQRGLTRLD 116
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++WD F E+L+ L+ KP+I GDLNV+HK IDL NP TN + AGFT EER F
Sbjct: 117 YRMKWDTKFLEYLLSLNESKPLIFCGDLNVAHKEIDLKNPKTNKKHAGFTEEERMGFDKY 176
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ F D+FR L+ K + YT+WSYM AR++N G +YF
Sbjct: 177 VENNFVDTFR-LFNKESDNYTWWSYMH-NARAKNIGWRIDYF 216
>gi|336392108|ref|ZP_08573507.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 257
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 134/223 (60%), Gaps = 8/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA VKK +++ +++DAD FC+QETK Q +++ P Y YW
Sbjct: 4 LKFISWNVNGLRAVVKKNFMEFFEQQDADFFCIQETKLQAGQ----IELTLPGYYQYWNY 59
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++TK +P VTYG+G +++ GR + + + PN+ LK L
Sbjct: 60 AERKGYSGTAIFTKHEPLNVTYGMGVAEHDQEGRLITLEYKDFYLLTCYTPNSQTKLKRL 119
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F ++ L+ +KPVI GDLNV+H+PIDL N TN +AGF+ EER FS
Sbjct: 120 DYRMSWEDAFRSYISTLNQKKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERAKFSQ 179
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTDSFR+ YP + Y++WSY AR N G +YF
Sbjct: 180 LLSAGFTDSFRYFYPDQV-TYSWWSY-RFNARQNNAGWRIDYF 220
>gi|363896773|ref|ZP_09323322.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
gi|361960338|gb|EHL13587.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
Length = 251
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 140/222 (63%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA + K ++ +K DADIFCLQETK Q +++ P Y YW +
Sbjct: 3 KLISWNVNGLRAVMGKNFMEDFRKLDADIFCLQETKLQAGQ----IELDLPGYFQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YG+G + ++ GR + + + I VPN+ LK L
Sbjct: 59 VKKGYSGTAIFTKEEPLSVSYGIGVEEHDQEGRVITAEFKDFYLITVYVPNSQGELKRLP 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+E++ F +++ L+ +KPV+ GDLNV+H+ IDL NP TN SAGF+ EER FS +
Sbjct: 119 YRMEFEDAFLNYILNLEKKKPVVYCGDLNVAHEEIDLKNPDTNHLSAGFSDEERAKFSRV 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD G+ DSFR+ YP++ Y++WSY +K AR RN G +YF
Sbjct: 179 LDNGYLDSFRYFYPEKE-EYSWWSYRTK-ARERNVGWRIDYF 218
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 132/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK +D+ + +AD+FCLQE K E Q ++M P Y TYW +
Sbjct: 2 KLISWNVNGLRAVMKKGFMDFFTEVNADVFCLQEIKLQEGQ----IEMDLPGYYTYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V YGLG + + GR + + I PN+ GL LD
Sbjct: 58 HKKGYSGTAIFTKQKPVAVQYGLGLEELDTEGRIITLEFDSYYVITVYTPNSQHGLLRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W++ + LD KPV+L GDLNV+H+ IDL NP N +++GFT EER +
Sbjct: 118 YRLLWEEAILSFVKTLDNHKPVLLCGDLNVAHEEIDLKNPKANKKNSGFTPEERSKMTQF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP+ G Y++WSY S R +N G +YF
Sbjct: 178 LESGFVDTFRYFYPEEEGHYSWWSYRS-NCREKNVGWRIDYF 218
>gi|377809183|ref|YP_005004404.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
gi|361055924|gb|AEV94728.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
Length = 251
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA V D K DAD FC+QETK + Q +++ FP Y YW +
Sbjct: 2 KLISWNVNGLRAAVTHGFEDTFKDLDADFFCVQETKLQKGQ----IEIDFPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK KP VTYG+G + + GR N + I PN+ LK L+
Sbjct: 58 ERKGYSGTAIFTKHKPLNVTYGIGIEEYDTEGRIITLEYANYYVITCYTPNSQPKLKRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++ +L +KPVI GDLNV+H IDL NP TN ++AGF+ +ER F+ L
Sbjct: 118 YRMSWEDAFKNYVDQLKKDKPVIFCGDLNVAHNEIDLKNPKTNHKNAGFSDQERAKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FRH YP TG Y++WSY AR N G +YF
Sbjct: 178 LQSGFTDTFRHFYPDLTGIYSWWSYRF-NARKNNAGWRIDYF 218
>gi|427440664|ref|ZP_18924936.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425787371|dbj|GAC45724.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 256
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 130/223 (58%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA VK LD + DAD+FC+QETK E Q + + P Y YW
Sbjct: 6 LKLISWNVNGLRAAVKHGFLDVFNELDADMFCVQETKLQEGQ----IDLDLPGYHQYWNY 61
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P V+YGLG + + GR F + PN+ L+ L
Sbjct: 62 AEKKGYSGTAIFTKREPVAVSYGLGIPEFDQEGRVITLEYEEFFLVTCYTPNSQPELRRL 121
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ WD F ++ +L KPVI GDLNV+H+ IDL N TN +AGFT EER F+
Sbjct: 122 DYRMNWDDAFRAYVKQLADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFTE 181
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD++R+ YP + G Y++WSY AR+ N G +YF
Sbjct: 182 LLQSGFTDTYRYFYPDKEGVYSWWSYRFN-ARANNAGWRIDYF 223
>gi|225569150|ref|ZP_03778175.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
gi|225161949|gb|EEG74568.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
Length = 250
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV+K +D+ ++ DADIFC+QETK E QL E P Y YW +
Sbjct: 2 KCISWNVNGIRACVQKGFMDFFQEADADIFCIQETKMQEGQLELET----PGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P T G+G + ++ GR +++ PN+ + L L
Sbjct: 58 ERKGYSGTAVFTKKEPLSFTCGIGIEEHDKEGRVITLEFEEFYFVTVYTPNSQSELARLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F +L KL+ +KPVI GDLNV+ + IDL NP TN ++AGFT EER+ F +
Sbjct: 118 YRMEWEDAFLAYLKKLEEKKPVIFCGDLNVAAEEIDLKNPKTNRKNAGFTDEEREKFRKI 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GF D+FR+ YP G Y++WSY + AR +N G +YF
Sbjct: 178 KASGFVDTFRYFYPDEEGIYSWWSYRFR-AREKNAGWRIDYF 218
>gi|406666269|ref|ZP_11074037.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
gi|405385808|gb|EKB45239.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
Length = 252
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 133/224 (59%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV K LDY ++ DAD FCLQETKC Q + ++ Y YW S+
Sbjct: 2 KFISWNVNGIRACVNKGFLDYFREMDADFFCLQETKCQVGQ----IDLQLEGYYQYWHSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNE---HYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
K GY+G ++TK +P V YG+ +NE GR N + + PNA L
Sbjct: 58 VKKGYSGTAVFTKHEPLAVYYGI--ENEIAADEGRILTLEYENFYLVNTYTPNAKRDLTR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L++RL W+ +L +LDA+KPVI GDLNV+H +D+ N +N ++GFT EER +
Sbjct: 116 LEERLLWEDRMRIYLKELDAKKPVIYCGDLNVAHSELDIKNVKSNIGNSGFTYEERGKMT 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FRH +P T +T+WSYM+K R RN G +YF
Sbjct: 176 DLLTSGFTDTFRHFHPDVTDHFTWWSYMAK-VRERNIGWRIDYF 218
>gi|422696461|ref|ZP_16754419.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
gi|315174931|gb|EFU18948.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
Length = 251
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G + K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIVAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|420145437|ref|ZP_14652903.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402932|gb|EJN56217.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 254
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK +++ +++DAD FC+QETK Q +++ P Y YW +
Sbjct: 2 KFISWNVNGLRAVVKKNFMEFFEQQDADFFCIQETKLQAGQ----IELTLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P VTYG+G +++ GR + + + PN+ LK LD
Sbjct: 58 ERKGYSGTAIFTKHEPLNVTYGMGVAEHDQEGRLITLEYKDFYLLTCYTPNSQTKLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++ L+ +KPVI GDLNV+H+PIDL N TN +AGF+ EER FS L
Sbjct: 118 YRMSWEDAFRSYISTLNQKKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERAKFSQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTDSFR+ YP + Y++WSY AR N G +YF
Sbjct: 178 LAAGFTDSFRYFYPDQV-TYSWWSY-RFNARQNNAGWRIDYF 217
>gi|393199117|ref|YP_006460959.1| exonuclease III [Solibacillus silvestris StLB046]
gi|327438448|dbj|BAK14813.1| exonuclease III [Solibacillus silvestris StLB046]
Length = 252
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 133/224 (59%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACV K LDY ++ DAD FCLQETKC Q + ++ Y YW S+
Sbjct: 2 KFISWNVNGIRACVNKGFLDYFREMDADFFCLQETKCQVGQ----IDLQLEGYYQYWHSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNE---HYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
K GY+G ++TK +P V YG+ +NE GR N + + PNA L
Sbjct: 58 VKKGYSGTAVFTKHEPLAVYYGI--ENEIAADEGRILTLEYENFYLVNTYTPNAKRDLTR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L++RL W+ +L +LDA+KPVI GDLNV+H +D+ N +N ++GFT EER +
Sbjct: 116 LEERLLWEDRMRIYLKELDAKKPVIYCGDLNVAHSELDIKNVKSNIGNSGFTYEERGKMT 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FRH +P T +T+WSYM+K R RN G +YF
Sbjct: 176 DLLTSGFTDTFRHFHPDVTDHFTWWSYMAK-VRERNIGWRIDYF 218
>gi|423598952|ref|ZP_17574952.1| exodeoxyribonuclease [Bacillus cereus VD078]
gi|401237222|gb|EJR43679.1| exodeoxyribonuclease [Bacillus cereus VD078]
Length = 252
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 143/225 (63%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFTKKEPISVTYGLGIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R++W+ F ++ +L+ +K V+ GDLNV+HK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMKWEDDFRAYIKRLNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREQF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TRTLEEGFVDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|333394549|ref|ZP_08476368.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 257
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 134/223 (60%), Gaps = 8/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA VKK +++ +++DAD FC+QETK Q +++ P Y YW
Sbjct: 4 LKFISWNVNGLRAVVKKNFMEFFEQQDADFFCIQETKLQAGQ----IELTLPGYYQYWNY 59
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++TK +P VTYG+G +++ GR + + + PN+ LK L
Sbjct: 60 AERKGYSGTAIFTKHEPLNVTYGMGVAEHDQEGRLITLEYKDFYLLTCYTPNSQTKLKRL 119
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F ++ L+ +KPVI GDLNV+H+PIDL N TN +AGF+ EER FS
Sbjct: 120 DYRMSWEDAFRSYISTLNQKKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERAKFSQ 179
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTDSFR+ YP + Y++WSY AR N G +YF
Sbjct: 180 LLAAGFTDSFRYFYPDQV-TYSWWSY-RFNARQNNAGWRIDYF 220
>gi|312900096|ref|ZP_07759412.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
gi|311292731|gb|EFQ71287.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
Length = 251
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA KK +D + DAD FCLQETK Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAVFKKNFMDVFNELDADFFCLQETKLQAGQ----IDLELPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K + V YGLG + ++ GR F + PN+ A LK L
Sbjct: 58 EKKGYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ EKPVIL GDLNV+H+ IDL N TN ++AGFT EER F+ L
Sbjct: 118 YRMTWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+ YP+ G Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYFYPEAEGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|227874120|ref|ZP_03992326.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
gi|227840032|gb|EEJ50456.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
Length = 254
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA + K ++ K+ DAD+FCLQETK E Q + + P Y YW +
Sbjct: 5 KLISWNVNGLRAVMGKNFMEDFKRLDADMFCLQETKLQEGQ----IDLDLPGYFQYWNYA 60
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YG+G + ++ GR + I VPN+ LK L
Sbjct: 61 VKKGYSGTAIFTKEEPLSVQYGIGVEEHDQEGRVITLEYPEFYLITVYVPNSQGELKRLP 120
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++++ F +++ L+ +KPVI GDLNV+H+ IDL NP +N +AGF+ EER FS +
Sbjct: 121 YRMKFEDAFLNYILTLEKKKPVIYCGDLNVAHEEIDLKNPDSNHMNAGFSDEERAKFSRV 180
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD G+ DSFRH YP + Y++WSY +K AR RN G +YF
Sbjct: 181 LDSGYLDSFRHFYPNKEEEYSWWSYRTK-ARDRNVGWRIDYF 221
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNVG 212
>gi|317496610|ref|ZP_07954957.1| exodeoxyribonuclease III [Gemella morbillorum M424]
gi|316913275|gb|EFV34774.1| exodeoxyribonuclease III [Gemella morbillorum M424]
Length = 254
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 139/223 (62%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K S+NV GLRA V K + KK DAD FCLQETK E QL ++F Y +Y+ +
Sbjct: 2 KCISFNVNGLRAIVNKNFEEDFKKLDADFFCLQETKMQEGQLD----LQFDGYYSYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ GY+G +YTK KP V YG+G +EH GR F+I PN+G+ LK L
Sbjct: 58 ERKGYSGTAIYTKHKPLNVNYGIGI-DEHDTEGRVITLEYDKFFFITVYTPNSGSELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W++ F +L++L+ K V++ GDLNV+H IDL NP +NT++AGFT EER+ F+
Sbjct: 117 DYRMTWEEDFKNYLLELNKTKGVVVCGDLNVAHTEIDLKNPKSNTKNAGFTPEEREKFTK 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF D+FR+ P+ TGAY++WSY AR N G +YF
Sbjct: 177 LLDAGFIDTFRYFNPELTGAYSWWSYRF-NARKNNAGWRIDYF 218
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 143/225 (63%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFTKKEPISVTYGLGIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R++W+ F ++ +L+ +K V+ GDLNV+HK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMKWEDDFRAYIKRLNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TRTLEEGFVDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|254166764|ref|ZP_04873618.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289596498|ref|YP_003483194.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197624374|gb|EDY36935.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289534285|gb|ADD08632.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 135/221 (61%), Gaps = 5/221 (2%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
+ SWNV G+RACV+ LD+++K DI LQE K E +P EV+ +P+Y YW +
Sbjct: 5 LISWNVNGIRACVRNGFLDFLEKYKPDILALQEIKATEDNIPIEVRY-YPDYHKYWNPAK 63
Query: 135 KAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GYAG L+TK++P + +G+G K + GR + + + PN+ GL LD
Sbjct: 64 KKGYAGTALFTKIEPLNIKFGIGEDKFDSEGRVITAEYEKFYLVNAYFPNSQHGLTRLDF 123
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
++E+DKL H +L +L +KPVIL GD NV+HK IDLANP N ++AGFT +ER L
Sbjct: 124 KIEFDKLIHSYLNELRKKKPVILCGDFNVAHKEIDLANPKQNVKNAGFTPQERAWMDEFL 183
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
G+ D+FR ++ K G YT+W+Y K AR RN G +YF
Sbjct: 184 QDGYIDTFR-MFTKEGGHYTWWTYRFK-ARERNIGWRVDYF 222
>gi|399925203|ref|ZP_10782561.1| exodeoxyribonuclease III [Peptoniphilus rhinitidis 1-13]
Length = 254
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 136/223 (60%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK +D KK DAD+F LQE K E Q +++ P Y ++ +
Sbjct: 5 KMISWNVNGLRAVVKKGFMDEFKKLDADLFALQEIKLQEGQ----IEIDLPHYYEFYNYA 60
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G +++K +P V YG+G +EH GR N +++ PN+ L+ L
Sbjct: 61 EKKGYSGTAIFSKKEPISVNYGIGI-DEHDKEGRVITLEFENFYFVTCYTPNSKRKLERL 119
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R W+ F +L +L K VIL GDLNV+HK IDLANP+TN +SAGFT EER+ F+
Sbjct: 120 DYRQVWEDDFRNYLNELRKNKEVILCGDLNVAHKEIDLANPSTNRKSAGFTDEEREKFTE 179
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL G+ D+FR+ YP Y++WSY +K+ R RN G +YF
Sbjct: 180 LLKNGYIDTFRYFYPDLKDEYSWWSYFAKS-RERNVGWRIDYF 221
>gi|254168985|ref|ZP_04875824.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197622091|gb|EDY34667.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 135/221 (61%), Gaps = 5/221 (2%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
+ SWNV G+RACV+ LD+++K DI LQE K E +P EV+ +P+Y YW +
Sbjct: 5 LISWNVNGIRACVRNGFLDFLEKYKPDILALQEIKATEDNVPMEVRY-YPDYHKYWNPAK 63
Query: 135 KAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GYAG L+TK++P V +G+G K + GR + + + PN+ GL LD
Sbjct: 64 KKGYAGTALFTKIEPLNVKFGIGEDKFDSEGRVITAEYEKFYLVNAYFPNSQHGLTRLDF 123
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
++E+DKL H +L +L +KPVIL GD NV+HK IDLANP N ++AGFT +ER L
Sbjct: 124 KIEFDKLIHSYLNELRKKKPVILCGDFNVAHKEIDLANPKQNVKNAGFTPQERAWMDKFL 183
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
G+ D+FR ++ K G YT+W+Y K AR RN G +YF
Sbjct: 184 QDGYIDTFR-MFTKEGGHYTWWTYRFK-ARERNIGWRVDYF 222
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 143/225 (63%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYW 130
K+ SWNV GLRA + K G L+Y+++ +ADIFCLQE K Q+ PE Y TYW
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLN-----PEGYYTYW 55
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G ++TK +P VTYGLG + ++ GR + + I PN+ GL+
Sbjct: 56 NYAVKKGYSGTAIFTKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYMITLYTPNSKRGLE 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD R++W+ F ++ +L+ +K V+ GDLNV+HK IDL NP +N ++ GF+ EER+ F
Sbjct: 116 RLDYRMKWEDDFRAYIKRLNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L++GF D++R+LYP + GAY++WSY AR++N G +YF
Sbjct: 176 TRTLEEGFVDTYRYLYPDQEGAYSWWSY-RMGARAKNIGWRLDYF 219
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + VPN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMGWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LD GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LDAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 140/223 (62%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK +D + +AD+F LQE K E QL E++ YK Y+ +
Sbjct: 2 KLVSWNVNGLRAVIKKGFVDSFNEINADVFALQEIKLSEGQLDFELE----GYKMYYNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ GY+G ++T+++P V+YG+G + EH GR + +++ PN+ GL+ L
Sbjct: 58 QRKGYSGTAIFTRIEPISVSYGIGME-EHDTEGRVITAEFEKFYFVTCYTPNSKRGLERL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W+ +F +L KL KPV+L GDLNV+H+ IDLANP TN ++AGFT EER F+
Sbjct: 117 EYRMVWEDVFRNYLNKLRETKPVVLCGDLNVAHEEIDLANPATNHKNAGFTNEERSKFTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL G+ D+FR+ YP R Y++WS +K+ R RN G +YF
Sbjct: 177 LLKSGYIDTFRYFYPDRKDEYSWWSNFAKS-RERNIGWRIDYF 218
>gi|255523264|ref|ZP_05390235.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296186225|ref|ZP_06854630.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
gi|255513132|gb|EET89401.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296049493|gb|EFG88922.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
Length = 252
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K L++ K+ +ADIFC+QE+K E Q ++++ Y YW +
Sbjct: 2 KLISWNVNGLRACVTKGFLEFFKEVNADIFCIQESKLQEGQ----IELELEGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK KP TYG+G + ++ GR + + + PN+ L L+
Sbjct: 58 ERKGYSGTAIFTKKKPLSFTYGIGIEEHDKEGRVITLEFDDFYMVTVYTPNSKDQLARLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F ++L L+ KPVI+ GDLNV+HK IDL NP TN ++AGFT EER+ F+
Sbjct: 118 YRMKWENDFRDYLKSLEKNKPVIMCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFTEF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D++R+ P + GAY++WSY AR N G +YF
Sbjct: 178 LSAGFIDTYRYFNPDKEGAYSWWSYRF-NARKNNAGWRIDYF 218
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q F Y +W +
Sbjct: 2 KLISWNVNGLRACMNKGFMDFFTSVNADVFCIQESKMQQEQ----NTFDFKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+GV ++K +P V+YG+G + EH GR + + PN+ L L
Sbjct: 58 IKKGYSGVVTFSKTEPLNVSYGIGIE-EHDTEGRVVTCEFDKFYLVNVYTPNSQRALARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP N ++AGF+ EER+ FS
Sbjct: 117 EYRMSWEVEFRKFLKNLELQKPVIVCGDLNVAHNEIDLENPKANRKNAGFSDEEREKFSE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LL+ GF D+FRH YP + AYT+WSYM + AR +N G
Sbjct: 177 LLNAGFIDTFRHFYPTKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR +N G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIGWRIDYF 218
>gi|358065851|ref|ZP_09152385.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
gi|356695714|gb|EHI57339.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
Length = 251
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV K L+Y + DAD+FC+QE+K Q + + Y YW +
Sbjct: 3 KLISWNVNGLRACVGKGFLEYFNEVDADVFCIQESKLQAGQ----IDLPLEGYYQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YG+G + ++ GR + + + PN+ GL L
Sbjct: 59 EKKGYSGTAMFTKEEPVSVAYGIGIEEHDKEGRVITAEFPEYYVVTCYTPNSKDGLARLP 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F +L L+ +KPVI GDLNV+H+ IDL NP TN ++AGF+ EER FS +
Sbjct: 119 YRMEWEDAFLAYLKGLEEKKPVIFCGDLNVAHQEIDLKNPKTNRKNAGFSDEERGKFSDV 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D++R+ YP +T Y++WSY +AR++N G +YF
Sbjct: 179 LAAGFIDTYRYFYPDKTEVYSWWSYRF-SARAKNAGWRIDYF 219
>gi|402301696|ref|ZP_10820957.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
gi|401723230|gb|EJS96766.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
Length = 250
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RACVKK LDY + DAD F +QETKC + Q ++++ Y+ YW +
Sbjct: 2 KFVSWNVNGIRACVKKGFLDYFHQVDADFFAIQETKCQKGQ----IELQLDGYEQYWNDA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK P V YG+G + GR + + PN+ L L
Sbjct: 58 ERKGYSGTAIFTKHTPLSVQYGIGEDLIDQEGRVIALEYSKFYLVTCYTPNSKRDLSRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W++ F +L L+ +KPVIL GDLNV+H IDL N +N ++GFT EER ++L
Sbjct: 118 YRLSWEEHFLAYLKNLEEKKPVILCGDLNVAHTEIDLKNAKSNHGNSGFTQEERGKMTTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTDSFR+LYP+ T Y++WSYM+K R RN G +YF
Sbjct: 178 LSSGFTDSFRYLYPETTDKYSWWSYMNK-VRERNIGWRIDYF 218
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +ADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADIFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEMEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RACV+K L++ ++ DADIFC+QE+K QL E++ Y YW +
Sbjct: 2 KLISWNVNGIRACVQKGFLEFFQEADADIFCIQESKMQAGQLDLELE----GYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YG+G + ++ GR +++ PN+ + L L
Sbjct: 58 EKKGYSGTAVFTKKEPLSVQYGIGIEEHDKEGRVITLEFEEFYFVTVYTPNSQSELARLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L L+ +KPVI GDLNV++ IDL NP TN ++AGFT EER F +
Sbjct: 118 YRIQWETDFLAYLKGLEQKKPVIFAGDLNVAYAEIDLKNPKTNRKNAGFTDEERAKFGEV 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR+ YP+ G Y++WSY +AR++N G +YF
Sbjct: 178 LKAGFIDTFRYFYPEMEGIYSWWSYRF-SARAKNAGWRIDYF 218
>gi|402584375|gb|EJW78317.1| exodeoxyribonuclease III [Wuchereria bancrofti]
Length = 314
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 139/229 (60%), Gaps = 14/229 (6%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
KI SWNVAGLRA +KK G + +E+ DI LQETKC ++P E++ Y T+ +
Sbjct: 59 IKIISWNVAGLRALIKKSGHSVLVEENPDIVALQETKC--VEVPNELQ---NGYHTFLNA 113
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY------GRNCNSNIVNTFYIRKNVPNAGA 186
S K+G+ GV L TK +P KV Y K++ GR + + + I VPN+G
Sbjct: 114 SEKSGHGGVLLLTKEEPIKVAYTFDDKSKCVVDGNGKGRIIIAEYESYYLINAYVPNSGR 173
Query: 187 GLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTIEE 245
GL LDKR WD + + KLD KPV+ +GDLNV+H+ IDLANP TN ++AGFT +E
Sbjct: 174 GLVNLDKRKIWDDYYLTFIKKLDLSKPVVYVGDLNVAHQEIDLANPKTNRNKTAGFTDQE 233
Query: 246 RDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+ F+ LLD GF D FR L P + GAYT+WS M AR +N G +YF
Sbjct: 234 RNDFTRLLDAGFVDVFRRLNPDKEGAYTFWSNMH-NAREKNVGWRLDYF 281
>gi|307566413|ref|ZP_07628850.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
gi|307344885|gb|EFN90285.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
Length = 249
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 136/222 (61%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV K + DAD FCLQETK E QL + FP Y++YW +
Sbjct: 2 KFISWNVNGLRACVGKNFKEEFLALDADFFCLQETKMQEGQL----DLSFPGYESYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK P V+ G+G + ++H GR + + + + PN+ LK L
Sbjct: 58 DKKGYSGTAIFTKHTPLSVSRGIGIEEHDHEGRVITLEMADFYLVTVYTPNSQDQLKRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L LD KPVI+ GD+NV+H+ IDL NP +N +AGF+ EER+ ++L
Sbjct: 118 YRMQWETDFQSYLHSLDKHKPVIVCGDMNVAHEEIDLKNPKSNHFNAGFSDEEREKMTTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR LYP++ Y++WSY K AR +N G +YF
Sbjct: 178 LSNGFTDTFRFLYPEQV-TYSWWSYRFK-AREKNIGWRIDYF 217
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADIFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + VPN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADIFCIQESKMQQDQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + VPN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|256080329|ref|XP_002576434.1| ap endonuclease [Schistosoma mansoni]
Length = 254
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 124/180 (68%), Gaps = 4/180 (2%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
N L + NFKI SWNV G+RA +K G++YIKKE+ADIFC+QETKC ++P E K+ P
Sbjct: 57 NPLSSKWNFKIVSWNVNGIRAVIKNNGMEYIKKENADIFCIQETKCPLHKIPSEAKV--P 114
Query: 125 EYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPN 183
Y+++W S+ KAGYAG L++K+ P KVTYG+G K ++ GR + + + VPN
Sbjct: 115 SYQSFWSSADKAGYAGTALFSKISPIKVTYGIGKKMHDDEGRVITAEYDKFYLVTAYVPN 174
Query: 184 AGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFT 242
+G GL L R EWD F E+L KLD+ KPVI+ GDLNV+H+ IDLA P TN ++AGFT
Sbjct: 175 SGQGLIRLPYREKEWDPDFLEYLRKLDSTKPVIVCGDLNVAHEEIDLARPETNHKTAGFT 234
>gi|297587792|ref|ZP_06946436.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302380031|ref|ZP_07268510.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|297574481|gb|EFH93201.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302312257|gb|EFK94259.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
Length = 253
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 134/223 (60%), Gaps = 7/223 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G RA KK + +ADIFCLQE K E Q+ E M+ Y Y S+
Sbjct: 2 KLISWNVNGYRAVWKKGFKEAFDSLNADIFCLQEIKMKENQMTDE--MEIEGYHRYSYSA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
KAGY+G +YTK +P V++G+G +EH GR + F + PN+ L+ L
Sbjct: 60 NKAGYSGTLVYTKTEPIGVSFGIGI-DEHDTEGRVITCEYEDFFLVNVYTPNSKQKLERL 118
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ FH +L L KPVI+ GDLNV+H IDL NP +N RSAGFT EER+ S
Sbjct: 119 DYRMVWEDEFHNYLNILRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKMSL 178
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ G+ D+FR+ YP +T Y+YWSY +K AR RN G +YF
Sbjct: 179 LLNDGYIDTFRYFYPDKTDEYSYWSYFAK-ARERNAGWRIDYF 220
>gi|323342310|ref|ZP_08082542.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463422|gb|EFY08616.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 138/225 (61%), Gaps = 11/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWL 131
K+ SWNV GLRA +KK+ + D D+ CLQETK QL + PE Y Y+
Sbjct: 2 MKLISWNVNGLRAVMKKDFEGIFEAMDTDVLCLQETKMQAGQLDYD-----PEGYYAYYN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +YT++KP VTYG+ ++EH GR + F + PN+ LK
Sbjct: 57 YAEKKGYSGTAVYTRIKPLNVTYGI-QEDEHNTEGRVITCEYDDFFLVCVYTPNSQPELK 115
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R++W+ F E+L LD KPV+L GDLNV+HK IDL NP+ N ++ GF+ +ER+ F
Sbjct: 116 RIDYRMQWEDDFREYLKMLDETKPVVLCGDLNVAHKEIDLKNPSANRKNPGFSDQEREQF 175
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++LLD GF DSFR L+P Y++WSY + ARSRNTG +YF
Sbjct: 176 TNLLDAGFIDSFRELHPNAIDRYSWWSYRA-NARSRNTGWRIDYF 219
>gi|389575850|ref|ZP_10165878.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
gi|389311335|gb|EIM56268.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
Length = 250
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 137/223 (61%), Gaps = 10/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWLS 132
K SWNV GLRAC+KK+ ++ DAD FC+QE+K E Q+ PE + YW
Sbjct: 2 KFISWNVNGLRACMKKDFDKTFRELDADFFCIQESKLQEGQIE-----YCPEGWNEYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++ K +VTYG+G + ++H GR F + PN+ GLK L
Sbjct: 57 AEKKGYSGTAIWAKKPALQVTYGIGEEEHDHEGRVITLEYDTFFLVTVYTPNSQDGLKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L KLD +KPVI+ GDLNV+H+ IDL NP TN ++AGFT EER F+
Sbjct: 117 DYRMTWEDSFRAYLGKLDEKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFTDEERGKFTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GFTDSFR+L+P+ Y++WSY AR +N G +YF
Sbjct: 177 LLDAGFTDSFRYLHPEDV-EYSWWSYRFH-AREKNAGWRIDYF 217
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRISWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADIFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + VPN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRIITCEFESFYLVNVYVPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 133/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADIFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L+
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLN 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV GLRAC++K D++++ ADIFC+QETK P + F Y +W S+
Sbjct: 2 RLVSWNVNGLRACMQKGFKDFLEQSGADIFCVQETKMQ----PEQANFAFEGYHAFWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +K +P V YG+G +++ GR + + VPNA GL L
Sbjct: 58 VKKGYSGVLTLSKEEPLSVRYGIGIAEHDLEGRVVVCEYSQFYLVNVYVPNAQRGLLRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W+K F L L A K V++ GDLNV+H IDL NP N +AGF+ ER +FS+L
Sbjct: 118 YRLSWEKAFRGFLSGLVAHKGVLVCGDLNVAHTEIDLTNPQANRYNAGFSDPERHAFSAL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L +GF D++RH YP++ AYT+WSY+ + AR RN G +YF
Sbjct: 178 LQEGFIDTYRHFYPEQKEAYTWWSYIGQ-ARERNVGWRIDYF 218
>gi|392947967|ref|ZP_10313585.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
gi|392436819|gb|EIW14725.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
Length = 254
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VK +D ++DAD FC+QETK Q + + FP Y+ YW +
Sbjct: 2 KLISWNVNGLRAAVKHGFIDIFNEQDADFFCVQETKLQAGQ----IDLDFPGYQQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK P VTYG+G + + GR + + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHTPLNVTYGIGVPEFDTEGRVITLEYADYYVLTCYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W+ F ++ L A KP+I GDLNV+H+ IDL N +N SAGFT EER F L
Sbjct: 118 YRQHWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNWRSNHHSAGFTDEERGKFDRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L G+TD+FRH YP +T Y++WSY AR N+G +YF
Sbjct: 178 LANGYTDTFRHFYPDQTDIYSWWSYRGH-ARDNNSGWRIDYF 218
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQDQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + VPN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 133/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + VPN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINVEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|350268411|ref|YP_004879717.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
gi|348593251|dbj|BAK97211.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
Length = 250
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K LD+ K DAD+ CLQETK P + P Y+ +W S+
Sbjct: 2 KLISWNVNGLRACIGKGFLDFCKSADADVICLQETKMK----PEQADFDLPGYEKFWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+V P +TY G + H GR + + + PNA L+ +D
Sbjct: 58 DKPGYSGTAVFTRVPPLNMTYDFGGDEYRHEGRVITAEFEEFYLVCCYTPNAQDELRRID 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L +LD KPV+L GDLNV+H+ IDL NP TN AGF+ +ER + L
Sbjct: 118 YRMRWEDDFRDYLRELDRVKPVVLCGDLNVAHEEIDLKNPKTNRGHAGFSDQERGKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF+D+FR LYP++ AY++WSY + AR +N G +YF
Sbjct: 178 LSTGFSDTFRTLYPEKI-AYSWWSYRFR-AREKNAGWRIDYF 217
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 132/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RAC+ K L++ + DAD FC+QETKC Q V + Y+ YW +
Sbjct: 2 KFISWNVNGIRACLGKGFLEFFHQIDADFFCIQETKCQAGQ----VVLSIEGYEQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK P V YG+G ++ + GR N + + PNA L L
Sbjct: 58 QKKGYSGTAIFTKHTPLSVKYGVGAEDSQDEGRIITLEYKNFYLVNVYTPNAQRDLARLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL+W+ +L +L+ +KPV+ GDLNV+H IDL N +N ++GFT EER FS+L
Sbjct: 118 LRLQWEDRLANYLQELNCQKPVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSAL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF DSFR+ +P+ T YT+WSYM+K R RN G +YF
Sbjct: 178 LESGFVDSFRYKHPEETDHYTWWSYMNKV-RERNIGWRIDYF 218
>gi|359406465|ref|ZP_09199155.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
gi|357555725|gb|EHJ37349.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
Length = 249
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 139/222 (62%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRACV+K+ + + DAD FCLQETK QL ++F Y +YW +
Sbjct: 2 KFISWNVNGLRACVQKDFEESFRTLDADFFCLQETKMQAGQL----DLQFEGYTSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YT+ P VTYG+G +++H GR + + + + PN+ GL+ LD
Sbjct: 58 EKKGYSGTAIYTRHTPLSVTYGIGIDEHDHEGRVITLEMEDFYLVTCYTPNSQDGLRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +++ LDA+KPVI+ GDLNV+H+ IDL NP TN ++AGFT EE ++
Sbjct: 118 YRMKWEDDFLQYIKGLDAKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFTDEECAKMTAF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L +GF D+FR L+P Y++WSY K AR +N G +YF
Sbjct: 178 LGEGFIDTFRTLHPDDP-TYSWWSYRFK-AREKNAGWRIDYF 217
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L+
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLN 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQDQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRIITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADIFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|332654136|ref|ZP_08419880.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
gi|332517222|gb|EGJ46827.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
Length = 252
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 136/223 (60%), Gaps = 6/223 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRAC+KK LD+ +++ D CLQETK + Q ++ EY W S
Sbjct: 1 MKLISWNVNGLRACLKKGFLDFYQEQKPDFCCLQETKMEQGQADVDLGENMLEY---WNS 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++T +P V YG+G +++H GR + + PN+ + LK L
Sbjct: 58 AEKKGYSGTAVFTPHQPLAVRYGMGKEEHDHEGRLITLEYEKFYLVCCYTPNSQSELKRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+EW+ +L++LD KPVI GDLNV+H+ IDL NP TN +AGFT +ER+ ++
Sbjct: 118 DYRMEWEDDLRAYLMELDKVKPVIYCGDLNVAHREIDLKNPKTNRMNAGFTDQEREKMTT 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FR LYP G Y++WSY + AR +N G +YF
Sbjct: 178 LLSSGFTDTFRFLYPDLEGVYSWWSYRFQ-ARKKNAGWRIDYF 219
>gi|402308513|ref|ZP_10827517.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
gi|400374964|gb|EJP27874.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
Length = 242
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 135/214 (63%), Gaps = 8/214 (3%)
Query: 82 GLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGV 141
GLRACV K + K DAD FCLQETK E QL ++F Y +YW + K GY+G
Sbjct: 3 GLRACVGKGFEESFKALDADFFCLQETKMQEGQL----NLQFEGYDSYWNYAEKKGYSGT 58
Query: 142 GLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKL 200
+YTK KP VTYGLG + ++H GR + + + I PN+ L+ LD R+ W+
Sbjct: 59 AIYTKHKPLNVTYGLGIEEHDHEGRVITLEMEDFYLITVYTPNSQDELRRLDYRMTWEDD 118
Query: 201 FHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDS 260
F +++ LDA+KPVI+ GDLNV+H+ IDL NP TN R+AGFT EER+ + L+ GFTDS
Sbjct: 119 FLKYIQGLDAKKPVIVCGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTITLNSGFTDS 178
Query: 261 FRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FR+ YP++ Y++WSY AR +N G +YF
Sbjct: 179 FRYKYPEQV-TYSWWSYRFH-AREKNAGWRIDYF 210
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLVSWNVNGLRACMTKGFMDFFNSVDADIFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + VPN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + VPN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADIFCIQESKIQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLNVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKVLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 133/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR++N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARNKNIG 212
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEMEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADIFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + VPN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLNVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKVLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K H +Q F Y +W +
Sbjct: 2 KMISWNVNGLRACMTKGFMDFFNTIDADVFCIQESKMHRSQ----SDFVFDGYYQFWNEA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G + +K +P V +G ++ GR + F + PN+ L+ L
Sbjct: 58 EKKGYSGTIILSKTEPLSVCNDMGIAHHDKEGRIIVAEYATFFLVNVYTPNSKRELERLT 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R EW+ F L L+ KPVI+ GDLNV+HK IDL NP TN R+AGFT EER+ S L
Sbjct: 118 YRQEWEDDFRSFLKGLEQYKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMSVL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DS+R+ YP + AYT+WSYM K AR NTG +YF
Sbjct: 178 LDSGFIDSYRYFYPDKEHAYTWWSYMGK-ARQNNTGWRIDYF 218
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNDGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|363900200|ref|ZP_09326706.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|395209879|ref|ZP_10398907.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
gi|361957054|gb|EHL10366.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|394704864|gb|EJF12396.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
Length = 252
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA + K ++ +K +ADIFCLQETK E Q + + P Y YW +
Sbjct: 3 KLISWNVNGLRAVLGKNFMEDFQKLNADIFCLQETKLQEGQ----IHLDLPGYFQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V YG+G T+++ GR + + I VPN+ LK L
Sbjct: 59 IKKGYSGTAIFTKEEPLSVQYGIGITEHDQEGRVITLEFKDYYLITVYVPNSQNELKRLP 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+E++ F ++ L+ +KPVI GDLNV+H+ IDL NP TN +AGF+ EER FS +
Sbjct: 119 YRMEFEDAFLNFILNLEKKKPVIYCGDLNVAHEEIDLKNPDTNHLNAGFSDEERAKFSRV 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L G+ DSFR+ YP + Y++WSY +K AR RN G +YF
Sbjct: 179 LSSGYLDSFRYFYPDKEEEYSWWSYRTK-ARDRNVGWRIDYF 219
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+GV +TK +P V+YG+ + EH GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINME-EHNKEGRVVTCEFESFYLVNVYTPNSQQALSRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+
Sbjct: 117 SYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LL+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 177 LLNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK +D +K+ +ADIFC+QE+K E Q + + Y YW +
Sbjct: 3 KLISWNVNGLRACVKKGFIDILKESNADIFCVQESKLQEGQ----IDLNLEGYYDYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K KP ++ G+G + ++ GR + + PN+ L +D
Sbjct: 59 EKKGYSGTAVFSKEKPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVYTPNSQQKLARID 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ KPVI+ GDLNV+HK IDL NP N +AGF+ EER+ F L
Sbjct: 119 YRMAWENDFRSYLNELNKAKPVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKFGEL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D++R+ YP + GAY++WSY AR+ N G +YF
Sbjct: 179 LKSGFIDTYRYFYPDKEGAYSWWSYRF-NARANNAGWRIDYF 219
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLVSWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++K +P V+YG+ + ++ GR + + + PN+ L L+
Sbjct: 58 IKKGYSGVVTFSKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLN 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|406897912|gb|EKD41704.1| hypothetical protein ACD_73C00569G0001 [uncultured bacterium]
Length = 250
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 137/228 (60%), Gaps = 14/228 (6%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KTYWL 131
K+ SWNV G+R+ + K LD++ ADI CLQETK H P +V + +Y YW
Sbjct: 1 MKMISWNVNGIRSILGKGFLDFVGSSCADIICLQETKAH----PEQVDLTLNDYPHHYWN 56
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
S+ K GY+G ++ KV+P G+G + +++ GR + + + PNA L
Sbjct: 57 SAIKKGYSGTAIFCKVQPIASQLGIGIEEHDNEGRVITLEFSDYYLVNVYTPNAQRELTR 116
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R++WD F +L KL++ KPVI GDLNV+HK IDLANP TN +AGFT +ERD FS
Sbjct: 117 LDYRMKWDADFLNYLKKLESHKPVIFCGDLNVAHKEIDLANPKTNQGNAGFTPQERDGFS 176
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG------CTNY 292
+L+ GF D+FR L+ G YT+WSYM+ AR RN G CT+Y
Sbjct: 177 KILESGFVDTFR-LFNNSGGFYTWWSYMAG-ARPRNIGWRIDYFCTSY 222
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FRGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ +++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIGEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + PN+ L L+
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFELFYLVNVYTPNSQQALSRLN 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 133/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR+++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARNKDIG 212
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADIFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L+
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRIITCEFESFYLVNIYTPNSQQALSRLN 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRRFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNTGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNDGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|224159467|ref|XP_002199909.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like, partial
[Taeniopygia guttata]
Length = 235
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 121/197 (61%), Gaps = 3/197 (1%)
Query: 94 YIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS-PKAGYAGVGLYTKVKPNKV 152
++++E D+ CLQETKC +P EV+ +W S+ + GY+GVGL + +P V
Sbjct: 1 WVQEEAPDVLCLQETKCAAAAVPAEVRALPGLPHQFWCSAKDRPGYSGVGLLARSEPLDV 60
Query: 153 TYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAE 211
TYG+G + + + I + F + VPNAG G+ L+ RL D F + L +LDA
Sbjct: 61 TYGIGEGRMDQTAGVMTTEIPSLFVVCAYVPNAGRGMVALEPRLRLDAAFLQFLRRLDAR 120
Query: 212 KPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGA 271
KPV+L GDLNV+H IDL +P N S GFT +ERD FS LL GF DSFRHLYP GA
Sbjct: 121 KPVLLCGDLNVAHADIDLCHPRANRASPGFTPQERDGFSRLLAAGFVDSFRHLYPAARGA 180
Query: 272 YTYWSYMSKTARSRNTG 288
+T+W+Y+ AR+RN G
Sbjct: 181 FTFWTYLGG-ARARNVG 196
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 133/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR+++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARNKDIG 212
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLVSWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQDQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + VPN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNNVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FNGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNTGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|257867352|ref|ZP_05647005.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257873685|ref|ZP_05653338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
gi|257801408|gb|EEV30338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257807849|gb|EEV36671.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
Length = 252
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 129/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK + + DAD FCLQETK E Q +++ P Y YW +
Sbjct: 2 KFISWNVNGLRAIVKKNFSEVFEALDADFFCLQETKLQEGQ----IELDLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K V YGLG + ++ GR F I PN+ L+ LD
Sbjct: 58 EKKGYSGTAIFAKEPALSVRYGLGIEEHDTEGRVITLEYPEFFLITCYTPNSQNELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L +KPVIL GDLNV+HK ID+ N TN +SAGFT EER+ FS+L
Sbjct: 118 YRMTWEDAFLAYLTELKQQKPVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREKFSTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR+ YP G Y++WSY AR N G +YF
Sbjct: 178 LAAGFTDTFRYFYPDAEGIYSWWSYRF-NARKNNAGWRIDYF 218
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|257877428|ref|ZP_05657081.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325568814|ref|ZP_08145107.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|257811594|gb|EEV40414.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325157852|gb|EGC70008.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 129/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK + + DAD FCLQETK E Q +++ P Y YW +
Sbjct: 2 KFISWNVNGLRAIVKKNFSEVFEALDADFFCLQETKLQEGQ----IELDLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K V YGLG + ++ GR F I PN+ L+ LD
Sbjct: 58 EKKGYSGTAIFAKEPALSVRYGLGIEEHDTEGRVITLEYPEFFLITCYTPNSQNELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L +KPVIL GDLNV+HK ID+ N TN +SAGFT EER+ FS+L
Sbjct: 118 YRMTWEDAFLAYLTELKQQKPVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREKFSTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR+ YP G Y++WSY AR N G +YF
Sbjct: 178 LAAGFTDTFRYFYPDAEGIYSWWSYRF-NARKNNAGWRIDYF 218
>gi|336066887|ref|YP_004561745.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296833|dbj|BAK32704.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 251
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 137/225 (60%), Gaps = 11/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWL 131
K+ SWNV GLRA +KK+ + D D+ CLQETK QL + PE Y Y+
Sbjct: 1 MKLISWNVNGLRAVMKKDFEGIFEAMDTDVLCLQETKMQAGQLDYD-----PEGYYAYYN 55
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ K GY+G +YT++KP VTYG+ ++EH GR + F + PN+ LK
Sbjct: 56 YAEKKGYSGTAVYTRIKPLNVTYGI-QEDEHNTEGRVITCEYDDFFLVCVYTPNSQPELK 114
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+D R++W+ F E+L LD KPV+L GDLNV+HK IDL NP+ N ++ GF+ +ER+ F
Sbjct: 115 RIDYRMQWEDDFREYLKMLDETKPVVLCGDLNVAHKEIDLKNPSANRKNPGFSDQEREQF 174
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++LLD GF DSFR L+P Y++WSY + ARSRN G +YF
Sbjct: 175 TNLLDAGFIDSFRELHPNAIDRYSWWSYRA-NARSRNIGWRIDYF 218
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402309414|ref|ZP_10828407.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400372381|gb|EJP25325.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
Length = 251
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 129/223 (57%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +K + K DAD FCLQE K E Q + M Y +YW +
Sbjct: 2 KFVSWNVNGLRAAREKGFDEIFKNFDADFFCLQEIKLQEGQ----IDMDMDGYYSYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ GY+G ++T+++P V YGLG K EH GR + PN+ L L
Sbjct: 58 KRKGYSGTAIFTRIEPIDVFYGLG-KEEHDDEGRLITLEYPEFYVSTVYTPNSKQELLRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R EW+ F E LDA+KPVI+ GD+NV+HK IDL NP TN ++ GFT EER+ F+
Sbjct: 117 DYRQEWEDEFREFFKNLDAKKPVIICGDMNVAHKEIDLKNPKTNRKNPGFTDEEREKFTL 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GFTD+FR+ YP + Y++WSY AR NTG +YF
Sbjct: 177 LLDAGFTDTFRYFYPDKENEYSWWSYRF-NARKNNTGWRIDYF 218
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLNVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQDQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + VPN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFELFYLVNVYVPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 130/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVNYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|325679379|ref|ZP_08158964.1| exodeoxyribonuclease III [Ruminococcus albus 8]
gi|324108976|gb|EGC03207.1| exodeoxyribonuclease III [Ruminococcus albus 8]
Length = 250
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 127/215 (59%), Gaps = 5/215 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G RAC++K D+ K DADIFC+QETK P + Y Y+ S+
Sbjct: 2 KLISWNVNGFRACLQKGFEDFFKSADADIFCIQETKMQ----PDQADFSPEGYHKYFHSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GY+G +YTK +P VTYGL + GR + +++ VPNA LK +D
Sbjct: 58 VKKGYSGTAVYTKNEPKAVTYGLNGAHTDEGRVITCEYDDFYFVCCYVPNAQNELKRIDY 117
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
R+E++ +L LD KPVI GDLNV+H+ IDL NP +N +AGF+ +ER F+ LL
Sbjct: 118 RMEFEDDMRAYLCGLDKLKPVIYCGDLNVAHEEIDLKNPKSNVGNAGFSDQERGKFTELL 177
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
GF D+FR LYP+ TG Y++WSY AR N G
Sbjct: 178 AAGFADTFRRLYPETTGVYSWWSYRF-NARKNNAG 211
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQDQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRMVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|163790917|ref|ZP_02185341.1| exodeoxyribonuclease [Carnobacterium sp. AT7]
gi|159873870|gb|EDP67950.1| exodeoxyribonuclease [Carnobacterium sp. AT7]
Length = 201
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/196 (47%), Positives = 124/196 (63%), Gaps = 5/196 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +KK +D + DAD FCLQETK E Q ++ K P Y YW +
Sbjct: 2 KFISWNVNGLRAIIKKGFMDIFNELDADFFCLQETKLQEGQ----IEFKVPGYYDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VTYG+G +++ GR + + + + PN+ + LK LD
Sbjct: 58 EKKGYSGTAIFTKHKPLSVTYGIGKPEHDQEGRVITLSYPDYYVVTCYTPNSKSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ F +L LD EKPVIL GDLNV+H+ IDL N TN +SAGF+ EER FS+L
Sbjct: 118 YRMEWEDDFLSYLKTLDTEKPVILCGDLNVAHENIDLKNWKTNQKSAGFSEEERLKFSTL 177
Query: 253 LDKGFTDSFRHLYPKR 268
LD GF D+FR+ YP +
Sbjct: 178 LDNGFIDTFRYFYPNK 193
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRMVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|291519655|emb|CBK74876.1| exodeoxyribonuclease III [Butyrivibrio fibrisolvens 16/4]
Length = 250
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 132/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA + K +D+ DADI LQE K E QL + P Y YW +
Sbjct: 2 KFVSWNVNGLRAVMGKGFMDFFDGIDADIIGLQEIKLSEGQLEWDK----PGYHAYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P V+YG+G + ++H GR + ++I PN+ LK LD
Sbjct: 58 EKKGYSGTAVFTKKEPISVSYGIGIEEHDHEGRVITLEFEDFYFITCYTPNSQNELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L KL+ +K VIL GDLNV+H+ ID+ NP TN +AGFT EER + L
Sbjct: 118 YRMTWEDDFRAYLQKLNEKKGVILCGDLNVAHEEIDIKNPKTNRHNAGFTDEERAKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR+ YP +T Y++WSY K AR +N G +YF
Sbjct: 178 LSAGFVDSFRYFYPDQTDIYSWWSYRFK-AREKNAGWRIDYF 218
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L +
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRIS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKERAYTWWSYMQQ-ARDKNIG 212
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 128/224 (57%), Gaps = 7/224 (3%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
N K SWNV GLRA VKK L+ + DAD FCLQETK Q +++ P Y YW
Sbjct: 11 NMKFISWNVNGLRAIVKKNFLEAFETFDADFFCLQETKLQAGQ----IELDLPGYTQYWN 66
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++ K YG+G + ++ GR F + PNA L+
Sbjct: 67 YAEKKGYSGTAIFAKEPALAAHYGIGIEEHDAEGRVITLEYPEFFLVTCYTPNAQNELRR 126
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R+ W+ F +L L +KPVIL GDLNV+H+ IDL N TN ++AGFT EER+ FS
Sbjct: 127 LDYRMTWEDAFRAYLTDLKQQKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEEREKFS 186
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL GFTD+FR+ YP G Y++WSY AR N G +YF
Sbjct: 187 TLLSAGFTDTFRYFYPDAEGIYSWWSYRF-NARKNNAGWRIDYF 229
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 133/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNIFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L+
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLN 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+GV +TK +P V+YG+ +EH GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINI-DEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+
Sbjct: 117 SYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LL+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 177 LLNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQDQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 131/215 (60%), Gaps = 6/215 (2%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
+ SWNV GLRAC+ K +D+ DADIFC+QE+K + Q E F Y +W +
Sbjct: 1 MISWNVNGLRACMTKGFMDFFNSVDADIFCIQESKMQQEQNTFE----FKGYFDFWNCAI 56
Query: 135 KAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 57 KKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSY 116
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS LL
Sbjct: 117 RMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELL 176
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 177 NAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 210
>gi|291522762|emb|CBK81055.1| exodeoxyribonuclease III [Coprococcus catus GD/7]
Length = 258
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 135/227 (59%), Gaps = 7/227 (3%)
Query: 69 EEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKT 128
E+ K+ SWNV GLRA V K +D + DADIFCLQETK Q +++ P Y+
Sbjct: 4 EDDKVKLISWNVNGLRAVVGKGFVDIFNELDADIFCLQETKLQAGQ----IELDLPGYEQ 59
Query: 129 YWLSSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAG 187
YW + + GY+G ++T++KP V YG+ +++ GR + + + PN+ G
Sbjct: 60 YWNYAERKGYSGTAVFTRIKPLSVRYGMDIAEHDTEGRVITLEYDSFYLVNVYTPNSKDG 119
Query: 188 LKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERD 247
L L R++W+ F +L L+ KPV++ GDLNV+H+ IDL NP TN ++AGF+ EER
Sbjct: 120 LARLPYRMKWEDDFRNYLKTLEQTKPVVMCGDLNVAHEEIDLKNPKTNRKNAGFSDEERA 179
Query: 248 SFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ LL GF D+FR+ YP +TG Y++WSY AR N G +YF
Sbjct: 180 KMTELLAAGFIDTFRYFYPDKTGEYSWWSYRF-NARKNNAGWRIDYF 225
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+GV +TK +P V+YG+ +EH GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINI-DEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+
Sbjct: 117 SYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LL+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 177 LLNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|268569472|ref|XP_002640531.1| C. briggsae CBR-EXO-3 protein [Caenorhabditis briggsae]
Length = 290
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 140/225 (62%), Gaps = 8/225 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY- 126
G + ++K WNVAGLRACVKK I KE DI L ETKC E P E++ KF +Y
Sbjct: 31 GSQKSWKFVCWNVAGLRACVKKSDFSEILKEQPDIVFLGETKCKE--WPNEIEEKFKDYS 88
Query: 127 KTYWLSSPK-AGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNA 184
KT +S+ K GYAGVG+ +KV P K+ G+G + GR + V F++ VPN+
Sbjct: 89 KTLVISTEKNGGYAGVGMLSKVAPLKIHKGIGDPEFDTAGRLIIAEFVEFFFVGSYVPNS 148
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTI 243
GA L L+KR W+ L E L + KPVI GDLNV+H+ IDL NP +N ++AGFT
Sbjct: 149 GAKLVNLEKRGRWEALLTEKLKSMTMTKPVIYGGDLNVAHEEIDLKNPESNRNKTAGFTD 208
Query: 244 EERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ER F+ +L+ GFTD+FR ++P+ YT+WSY++ AR ++ G
Sbjct: 209 QERGWFTEMLEMGFTDTFRKMHPEEK-KYTFWSYLA-NAREKDVG 251
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 133/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L+
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLN 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 133/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L+
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLN 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKVLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|347531556|ref|YP_004838319.1| exodeoxyribonuclease [Roseburia hominis A2-183]
gi|345501704|gb|AEN96387.1| exodeoxyribonuclease [Roseburia hominis A2-183]
Length = 255
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 133/224 (59%), Gaps = 11/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQL--PPEVKMKFPEYKTYWL 131
K+ SWNV GLRAC++K ++ DADIFC+QE+K E Q+ PE Y YW
Sbjct: 2 KLISWNVNGLRACMQKGFAEFFTASDADIFCIQESKLQEGQIDFAPE------GYYAYWN 55
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ K GY+G ++T+ +P V YG+G +++ GR + + + PN+ L
Sbjct: 56 YAQKKGYSGTAIFTRKEPLSVHYGIGIPQHDTEGRVITLEFPDFYMVTCYTPNSQNELAR 115
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
L R+EW+ F +L LD KP+IL GDLNV+H+ IDL NP TN ++AGFT EER +
Sbjct: 116 LSYRMEWEDAFLSYLKGLDRNKPLILCGDLNVAHEEIDLKNPKTNRKNAGFTDEERTKMT 175
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+LL GFTD+FRH YP G Y++WSY AR +N G +YF
Sbjct: 176 ALLSAGFTDTFRHFYPDTEGIYSWWSYRFH-AREKNAGWRIDYF 218
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 131/223 (58%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
+K SWNV GLRA + K ++ AD FCLQETK Q ++M P YK YW
Sbjct: 3 YKFISWNVNGLRAVMGKNFMEAFDSLGADFFCLQETKLQAGQ----IEMDLPGYKEYWNY 58
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P V+YG+G +++ GR + F + PN+ LK L
Sbjct: 59 AQKKGYSGTAIFTKHEPLSVSYGIGIEQHDTEGRVITLEYADFFLVTVYTPNSQNELKRL 118
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F LV L A+KPVI+ GD+NV+H+ ID+ NP+ N R+AGFT EER +
Sbjct: 119 DYRMAWEDDFRNFLVSLKAKKPVIVCGDMNVAHEEIDIKNPSANRRNAGFTDEERAKMTE 178
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF D+FR L P+ AY++WSY AR RN G +YF
Sbjct: 179 LLASGFIDTFRTLNPELKDAYSWWSYRFH-ARERNAGWRIDYF 220
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEMEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|81428949|ref|YP_395949.1| exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
gi|78610591|emb|CAI55642.1| Exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
Length = 254
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 132/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +KK+ + ++ DAD FCLQETK Q V++ P Y Y+ +
Sbjct: 2 KFISWNVNGLRAVLKKDFMTTFEQFDADFFCLQETKMQAGQ----VELDLPGYHQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P VTYG+ +++H GR F I PN+ LK LD
Sbjct: 58 EKKGYSGAAIFTKHEPLNVTYGIQQPEHDHEGRVITLEYPQFFLITCYTPNSQNQLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++ +L +KPVI GDLNV+H+ IDL N TN +SAGF+ EER ++L
Sbjct: 118 YRMTWENAFRAYVQQLGTQKPVIFCGDLNVAHEAIDLKNDRTNHKSAGFSDEERVQMTTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR+ YP +T Y++WSY AR N G +YF
Sbjct: 178 LQSGFTDTFRYFYPDQTDIYSWWSYRFH-ARDNNAGWRIDYF 218
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACVKK LD +K+ +ADIFC+QE+K E Q + + Y YW +
Sbjct: 3 KLISWNVNGLRACVKKGFLDILKESNADIFCVQESKLQEGQ----IDLNLDGYYDYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K KP ++ G+G + ++ GR + + PN+ L +D
Sbjct: 59 EKKGYSGTAVFSKEKPLNISLGIGIEEHDKEGRVLTLEFEEFYLVNVYTPNSQQKLARID 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L +L+ +K VI+ GDLNV+HK IDL NP N +AGF+ EER+ F L
Sbjct: 119 YRMAWENDFRHYLNELNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKFGEL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D++R+ YP + GAY++WSY AR+ N G +YF
Sbjct: 179 LKSGFIDTYRYFYPGKEGAYSWWSYRF-NARANNAGWRIDYF 219
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSIDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 132/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV GLRAC++K D++ K ADIFC+QETK P + F Y +W S+
Sbjct: 2 RLVSWNVNGLRACMQKGFKDFLLKSGADIFCVQETKMQ----PDQADFVFENYHAFWNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +K P V YGLG + ++ GR + + PN+ GL L
Sbjct: 58 QKKGYSGVLTLSKSAPLDVRYGLGLEEHDTEGRVITCEYEYFYLVNVYTPNSQRGLLRLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL+W+ +F E L L + K V++ GDLNV+H IDL NP +N +AGF+ ER++F L
Sbjct: 118 YRLQWESVFREFLQNLASHKEVLICGDLNVAHTEIDLTNPQSNRYNAGFSDPERNAFGQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L G D++RH YP +T YT+WSYM+++ R+RN G +YF
Sbjct: 178 LQLGLIDTYRHFYPDKTEVYTWWSYMNQS-RARNIGWRIDYF 218
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +ADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADIFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNAFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|148544535|ref|YP_001271905.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153898|ref|YP_001842239.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227363037|ref|ZP_03847174.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325682856|ref|ZP_08162372.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
gi|148531569|gb|ABQ83568.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225242|dbj|BAG25759.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227071921|gb|EEI10207.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324977206|gb|EGC14157.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
Length = 253
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SW+V GL++ + ++ K++DAD FCLQ T+ + + P ++ P Y YW +
Sbjct: 2 KFISWSVNGLKSAINHGFVEDFKRQDADFFCLQRTRLDKGEEPIQI----PNYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V YG+ + + GR N + I VP +G L+ LD
Sbjct: 58 EKKGYSGTAIFTKYKPENVIYGMNNSIFDKEGRLITLEYPNFYLIDVYVPVSGEKLQHLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL+WD+ F ++++ L + KPVI+ GD++++++PIDLA PT N AGFT +ER F L
Sbjct: 118 YRLDWDRAFLDYVINLQSSKPVIIGGDMSIAYQPIDLAEPTENHHKAGFTKQERADFGKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ G TD+FR+L+P GAYT+WSY AR RN G +YF
Sbjct: 178 LNAGLTDTFRYLHPNLHGAYTWWSY-RYDARERNVGWRLDYF 218
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|237733965|ref|ZP_04564446.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229383046|gb|EEO33137.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 251
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 138/223 (61%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RAC+ K D +K+ ADIFC+QETK E Q ++++ Y TY S
Sbjct: 1 MKLVSWNVNGIRACITKGFYDVLKESKADIFCVQETKMQEGQ----IELEKHGYYTYMNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K KP +YG+G + ++H GR + + PN+ LK L
Sbjct: 57 AEKKGYSGTLVFSKEKPLNYSYGIGIEEHDHEGRVVTLEYEKFYLVNCYTPNSQNELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W++ F +L L+ KPVIL GDLNV+H+ IDL NP TN ++AGF+ EER ++
Sbjct: 117 DYRMHWEEDFLAYLKSLEKSKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTN 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GF D++R+LYP + G Y++WSY AR N G +YF
Sbjct: 177 LLENGFIDTYRYLYPDQEGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ +ER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDKEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FNGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKTLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKTLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|300767631|ref|ZP_07077541.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300494616|gb|EFK29774.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 265
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 132/226 (58%), Gaps = 7/226 (3%)
Query: 70 EPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTY 129
E + K+ SWNV GLRA VK + + DAD FC+QETK Q +++ FP Y Y
Sbjct: 9 ETHVKLISWNVNGLRAAVKHGFVMTFNELDADFFCVQETKLQAGQ----IELDFPGYYQY 64
Query: 130 WLSSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
W + + GY+G ++TK +P VTYG+G + + GR + + + PN+G L
Sbjct: 65 WNYAERKGYSGTAIFTKHEPLNVTYGIGVPEFDDEGRVITLEYADYYVLTCYTPNSGGEL 124
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
K LD R +W+ F ++ L A KP+I GDLNV+H+ IDL N +N SAGFT EER
Sbjct: 125 KRLDYRQQWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNWRSNHHSAGFTDEERTK 184
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
F LL G+TD+FRH YP +T Y++WSY AR N+G +YF
Sbjct: 185 FDRLLAAGYTDTFRHFYPDQTDIYSWWSYRGH-ARDNNSGWRIDYF 229
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNIFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G +YF
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIGWRIDYF 218
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLNVSYGIDMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|289450732|ref|YP_003475042.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185279|gb|ADC91704.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 251
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRACV+K ++ ++ ADI C+QE+K Q + + P Y YW +
Sbjct: 3 KLISWNVNGLRACVEKGFVESMQHLSADIICIQESKLQAGQ----IDLDLPGYCQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K++P +VTYG+ ++ GR + + + PN+ GLK L
Sbjct: 59 RKKGYSGTAIFSKIEPLRVTYGMNMPDHDQEGRLITAEFPDYYLCTVYTPNSQDGLKRLV 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W++ F +L +L KPVI+ GDLNV+H+ IDL NP N ++ GFT EER F +L
Sbjct: 119 YRQSWERDFLTYLQELRRVKPVIICGDLNVAHREIDLKNPAANRKNPGFTDEERAEFQTL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+ YP++ Y++WSY ARSRN G +YF
Sbjct: 179 LDAGFVDTFRYFYPEKPEEYSWWSY-RFNARSRNAGWRIDYF 219
>gi|257897862|ref|ZP_05677515.1| AP endonuclease [Enterococcus faecium Com15]
gi|257835774|gb|EEV60848.1| AP endonuclease [Enterococcus faecium Com15]
Length = 250
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 129/221 (58%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L++ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEFFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|167756678|ref|ZP_02428805.1| hypothetical protein CLORAM_02216 [Clostridium ramosum DSM 1402]
gi|167702853|gb|EDS17432.1| exodeoxyribonuclease III [Clostridium ramosum DSM 1402]
Length = 251
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 137/223 (61%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RAC+ K D +K+ ADIFC+QETK E Q ++++ Y TY S
Sbjct: 1 MKLVSWNVNGIRACITKGFYDVLKESKADIFCVQETKMQEGQ----IELEKHGYYTYMNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K KP +YG+G + ++H GR + + PN+ LK L
Sbjct: 57 AEKKGYSGTLVFSKEKPLNYSYGIGIEEHDHEGRVVTLEYEKFYLVNCYTPNSQNELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L L+ KPVIL GDLNV+H+ IDL NP TN ++AGF+ EER ++
Sbjct: 117 DYRMHWEDDFLAYLKSLEKSKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTN 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GF D++R+LYP + G Y++WSY AR N G +YF
Sbjct: 177 LLENGFIDTYRYLYPDQEGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|194466723|ref|ZP_03072710.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194453759|gb|EDX42656.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 253
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SW+V GL++ + ++ K++DAD FCLQ T+ + + P ++ P Y YW +
Sbjct: 2 KFISWSVNGLKSAINHGFVEDFKRQDADFFCLQRTRLDKGEEPFQI----PNYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP V YG+ + + GR N + I VP +G L+ LD
Sbjct: 58 EKKGYSGTAIFTKYKPENVIYGMNNSIFDKEGRLITLEYPNFYLIDVYVPVSGEKLQHLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL+WD+ F +++ L + KPVI+ GD++V+++PIDLA PT + AGFT +ER F L
Sbjct: 118 YRLDWDRAFLDYVTNLQSSKPVIIGGDMSVAYQPIDLAEPTEDHHKAGFTKQERSDFGKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD G TD+FR+L+P GAYT+WSY AR RN G +YF
Sbjct: 178 LDAGLTDTFRYLHPNLHGAYTWWSY-RYDARERNVGWRLDYF 218
>gi|332687227|ref|YP_004457001.1| exodeoxyribonuclease III [Melissococcus plutonius ATCC 35311]
gi|332371236|dbj|BAK22192.1| exodeoxyribonuclease III [Melissococcus plutonius ATCC 35311]
Length = 254
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK + + DAD FC+QETK + Q + ++ P Y YW +
Sbjct: 2 KCISWNVNGLRAIVKKNFIYVFNELDADFFCVQETKLQDGQ----IDLELPGYHQYWDYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++ K KV YGL + ++ GR N + + PN+ LK L
Sbjct: 58 IKKGYSGVAVFAKEAAQKVYYGLNMEEHDQEGRLLTLEYPNFYLVNCYTPNSQPELKRLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++L+KL ++K VIL GDLNV+H+PIDL N TN SAGF+ EER+ + L
Sbjct: 118 YRMTWENAFRDYLIKLKSKKQVILCGDLNVAHQPIDLKNWRTNQHSAGFSPEEREKMTKL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D++R+ YP + G Y++WSY AR N G +YF
Sbjct: 178 LDNGFIDTYRYFYPDKEGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|328947089|ref|YP_004364426.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
gi|328447413|gb|AEB13129.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
Length = 251
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA + K ++ DAD FCLQETK Q ++M+ P+Y +W +
Sbjct: 2 KFISWNVNGLRAVMGKNFMEAFGSLDADFFCLQETKLQAGQ----IQMELPDYHQFWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK +P +YG+G +++ GR F + PN+ L+ L+
Sbjct: 58 EKKGYSGTAVFTKHEPISASYGIGIAEHDTEGRVITLEYEKFFLVTVYTPNSQDELRRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ F +L L +K VI+ GD+NV+H+ ID+ NP TN R+AGFT EER + L
Sbjct: 118 YRMKWEDDFRAYLKTLALKKGVIVCGDMNVAHEEIDIKNPKTNRRNAGFTDEERGKMTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTDSFRH YP G Y++WSY AR +NTG +YF
Sbjct: 178 LSSGFTDSFRHFYPDTAGVYSWWSYRFH-AREKNTGWRIDYF 218
>gi|223935760|ref|ZP_03627676.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
gi|223895768|gb|EEF62213.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
Length = 250
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 136/223 (60%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWLS 132
K+ SWNV GLRA +KK LD++ KED DI CLQETKC P +V+ +P + TYW +
Sbjct: 2 KLISWNVNGLRAVLKKNFLDFLAKEDPDILCLQETKC----TPDDVEQLWPATFTTYWNT 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK KP V+ G+ +++ GR S F + VPN+ L L
Sbjct: 58 AQKKGYSGTAIFTKAKPISVSLGINCPEHDMEGRVLTSEYPEFFLVNVYVPNSKRELTRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R +WD F +L KL+ +KPVI GDLNV+H IDLANP N ++ GFT EER FS+
Sbjct: 118 AYRQQWDCDFLSYLKKLEKKKPVIFCGDLNVAHTEIDLANPKANVKNHGFTPEERAGFST 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ GF D+FR + K G Y++WS M ARSRN G +YF
Sbjct: 178 VIKAGFIDTFRE-FEKGGGHYSWWSPMGG-ARSRNVGWRIDYF 218
>gi|329768092|ref|ZP_08259601.1| exodeoxyribonuclease III [Gemella haemolysans M341]
gi|328838247|gb|EGF87859.1| exodeoxyribonuclease III [Gemella haemolysans M341]
Length = 254
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 138/223 (61%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K S+NV GLRA V K + KK DAD FCLQETK QL ++F Y +Y+ +
Sbjct: 2 KCISFNVNGLRAIVGKNFEEDFKKLDADFFCLQETKMQAGQLD----LQFNGYYSYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ GY+G +YTK +P VTYG+G + EH GR F+I PN+G+ LK L
Sbjct: 58 ERKGYSGTAIYTKHEPINVTYGIGIE-EHDTEGRVITLEYDKFFFITVYTPNSGSELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W++ F +L++L+ K +++ GDLNV+H IDL NP +NT++AGFT EER+ F+
Sbjct: 117 EYRMSWEEDFKNYLLELNKTKGIVVCGDLNVAHTEIDLKNPKSNTKNAGFTQEEREKFTK 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF D+FR+ P TGAY++WSY AR N G +YF
Sbjct: 177 LLDAGFIDTFRYYNPDLTGAYSWWSYRF-NARKNNAGWRIDYF 218
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSINADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS L
Sbjct: 118 YRMNWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ K ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +K L + DAD FC+QETK P ++ + P+Y YW +
Sbjct: 3 KFISWNVNGLRAAIKHGFLQVFNEMDADFFCIQETKL----APGQLDLDLPDYHQYWNYA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K P V YG+ + +H GR + + I VPN+GA LK LD
Sbjct: 59 EKKGYSGTAIFAKQPPLSVQYGINVPEFDHEGRVITLEYPDFYLINTYVPNSGAELKRLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +++ F+E++ +L +K ++ GDLNV+H+ IDL NP +N GFT EER FS L
Sbjct: 119 FRHGFNEAFYEYVNQLSQQKSIVWCGDLNVAHQEIDLKNPQSNHHHPGFTDEERFDFSKL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR+ YP + +Y++WSY AR RN G +YF
Sbjct: 179 LKSGFTDTFRYFYPDQEHSYSWWSYRFH-ARQRNAGWRIDYF 219
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RAC+ K LD+ + +AD FC+QETKC Q V++ +Y+ YW +
Sbjct: 2 KFISWNVNGIRACLGKGFLDFFHQIEADFFCIQETKCQAGQ----VELALDDYEQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK P V YG+G ++ + GR N + + PNA L L
Sbjct: 58 QKKGYSGTAIFTKHTPLSVMYGVGDEDSQDEGRIITLEYQNFYLVNVYTPNAQRDLARLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W+ +L L+++KPV+ GDLNV+H IDL N +N ++GFT EER FS L
Sbjct: 118 LRLTWEDRLAGYLQDLNSKKPVVYCGDLNVAHTEIDLKNAKSNVGNSGFTYEERAKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR+ +P T +T+WSYM+K R RN G +YF
Sbjct: 178 LASGFVDSFRYKHPNETDHFTWWSYMNKV-RERNIGWRIDYF 218
>gi|355574795|ref|ZP_09044431.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354818271|gb|EHF02763.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 261
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 133/229 (58%), Gaps = 9/229 (3%)
Query: 69 EEPNFKIASWNVAGLRACVKKEGL--DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY 126
EE ++ SWNV GLRA +KK+ + DAD+F +QETK E QL + P Y
Sbjct: 5 EERELRLVSWNVNGLRAVMKKDPSFPQIFEAADADVFAIQETKLQEGQL----DLDLPGY 60
Query: 127 KTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAG 185
W + + GY+G ++++ +P +V +G + + GR C +++ PN+
Sbjct: 61 HQTWNYAERKGYSGTAVFSREEPLRVIRQIGCEFADDEGRVCALEFERYWFVDVYTPNSK 120
Query: 186 AGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL LD+R+ WD+ + E L L EKPV+ GD NV+H+ IDL NP TN +AGF+ EE
Sbjct: 121 NGLLRLDERMVWDRSYREFLSGLAKEKPVVTCGDFNVAHEEIDLKNPDTNHMNAGFSDEE 180
Query: 246 RDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+ F LL+ GF DSFR LYP R AY++WSY + AR RN G +YF
Sbjct: 181 REGFGKLLEAGFVDSFRRLYPDREDAYSWWSYRMR-ARERNVGWRIDYF 228
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVITFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNIFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+GV +TK +P V+YG+ +EH GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINI-DEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+
Sbjct: 117 SYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LL+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 177 LLNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +ADIFC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADIFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEMEFKKFLKVLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERKKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|308179822|ref|YP_003923950.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045313|gb|ADN97856.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 254
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VK + + DAD FC+QETK Q +++ FP Y YW +
Sbjct: 2 KLISWNVNGLRAAVKHGFVTTFNELDADFFCVQETKLQAGQ----IELDFPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P VTYG+G + + GR + + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHEPLNVTYGIGVPEFDDEGRVITLEYADYYVLTCYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +W+ F ++ L A KP+I GDLNV+H+ IDL N +N SAGFT EER F L
Sbjct: 118 YRQQWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNWHSNHHSAGFTDEERTKFDRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L G+TD+FRH YP +T Y++WSY AR N+G +YF
Sbjct: 178 LAAGYTDTFRHFYPDQTDIYSWWSYRGH-ARDNNSGWRIDYF 218
>gi|254555843|ref|YP_003062260.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|380031793|ref|YP_004888784.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|418274434|ref|ZP_12889932.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448820389|ref|YP_007413551.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
gi|254044770|gb|ACT61563.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|342241036|emb|CCC78270.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|376010000|gb|EHS83326.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448273886|gb|AGE38405.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
Length = 254
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VK + + DAD FC+QETK Q +++ FP Y YW +
Sbjct: 2 KLISWNVNGLRAAVKHGFVTTFNELDADFFCVQETKLQAGQ----IELDFPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P VTYG+G + + GR + + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHEPLNVTYGIGVPEFDDEGRVITLEYADYYVLTCYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +W+ F ++ L A KP+I GDLNV+H+ IDL N +N SAGFT EER F L
Sbjct: 118 YRQQWEDAFLTYINSLSANKPLIFCGDLNVAHENIDLKNWRSNHHSAGFTDEERTKFDRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L G+TD+FRH YP +T Y++WSY AR N+G +YF
Sbjct: 178 LAAGYTDTFRHFYPDQTDIYSWWSYRGH-ARDNNSGWRIDYF 218
>gi|302334904|ref|YP_003800111.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
gi|301318744|gb|ADK67231.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
Length = 263
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 134/225 (59%), Gaps = 9/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEG--LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYW 130
K+ SWNV GLRA ++K+ L + DAD+F +QETK E Q V++ P Y W
Sbjct: 11 LKLVSWNVNGLRAVMRKDPSFLQIFSQLDADVFAIQETKLQEGQ----VELDLPGYFQTW 66
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ + GY+G ++++ P +V +G+ + GR C +++ PN+ GL
Sbjct: 67 NFAERKGYSGTAVFSREDPLRVIRQIGSDVADDEGRVCALEFPTFWFVDVYTPNSKQGLA 126
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
+++R+ WD+ F L++LDA KP++ GD NV+H+ IDL NP+TN + GF+ ERDSF
Sbjct: 127 RIEERMGWDERFRLFLLELDAHKPIVTCGDFNVAHQEIDLRNPSTNHENPGFSDAERDSF 186
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GFTD+FR L P GAY++WSY + AR RN G +YF
Sbjct: 187 GRLLDAGFTDTFRSLNPDLEGAYSWWSYRMR-ARERNVGWRIDYF 230
>gi|354806768|ref|ZP_09040248.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
gi|354514743|gb|EHE86710.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
Length = 254
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+ +
Sbjct: 2 KFISWNVNGLRAVLKKDFMTTFNQLDADFFCLQETKMQAGQ----VELDLPGYHQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP TYG+G +++ GR + I PN+ LK LD
Sbjct: 58 EKKGYSGTAIFTKHKPLTATYGIGQPEHDQEGRVITLEYPTFYLITCYTPNSQDKLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F ++ L +KPVI GDLNV+H+PIDL N TN +AGF+ EER ++L
Sbjct: 118 YRMRWENAFQTYIADLSTQKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERGQMTTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L++GFTD+FR+ YP + Y++WSY AR N G +YF
Sbjct: 178 LNRGFTDTFRYFYPDQPDIYSWWSYRFH-ARDNNAGWRIDYF 218
>gi|420263761|ref|ZP_14766397.1| exodeoxyribonuclease [Enterococcus sp. C1]
gi|394769203|gb|EJF49066.1| exodeoxyribonuclease [Enterococcus sp. C1]
Length = 250
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 128/223 (57%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK + + DAD FCLQETK E Q +++ P Y YW +
Sbjct: 2 KFISWNVNGLRAIVKKNFSEVFEALDADFFCLQETKLQEGQ----IELDLPGYHQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G ++ K V YGLG + EH GR F I PN+ L+ L
Sbjct: 58 EKKGYSGTAIFAKEPALSVRYGLGIE-EHDTEGRVITLEYPEFFLITCYTPNSQNELRRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L +L +K VIL GDLNV+HK ID+ N TN +SAGFT EER+ FS+
Sbjct: 117 DYRMTWEDAFLAYLTELKQQKSVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREKFST 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FR+ YP G Y++WSY AR N G +YF
Sbjct: 177 LLAAGFTDTFRYFYPDAEGIYSWWSYRF-NARKNNAGWRIDYF 218
>gi|357050363|ref|ZP_09111563.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
gi|355381448|gb|EHG28572.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
Length = 250
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 127/222 (57%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK L+ + DAD FCLQETK Q +++ P Y YW +
Sbjct: 2 KFISWNVNGLRAIVKKNFLEAFETFDADFFCLQETKLQAGQ----IELDLPGYTQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++ K YG+G + ++ GR F + PNA L+ LD
Sbjct: 58 EKKGYSGTAIFAKEPALAAHYGIGIEEHDAEGRVITLEYPEFFLVTCYTPNAQNELRRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F +L L +KPVIL GDLNV+H+ IDL N TN ++AGFT EER+ FS+L
Sbjct: 118 YRMTWEDAFRAYLTDLKQQKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEEREKFSTL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR+ YP G Y++WSY AR N G +YF
Sbjct: 178 LSAGFTDTFRYFYPDAEGIYSWWSYRF-NARKNNAGWRIDYF 218
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR +N G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKNIG 212
>gi|390468816|ref|XP_003734006.1| PREDICTED: uncharacterized protein LOC100400557 [Callithrix
jacchus]
Length = 289
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 133/230 (57%), Gaps = 34/230 (14%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK 127
G+ KI SWNV GLRA +KK+GLD++K+E DI CLQETKC E +LP E++ + P
Sbjct: 57 GKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQ-ELPGLP 115
Query: 128 TYWLSSP--KAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAG 185
+ S+P K GY+GVGL ++ P KV+YG+G
Sbjct: 116 HQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGR--------------------------- 148
Query: 186 AGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL L+ R WD+ F + L L + KP++L GDLNV+H+ IDL NP N ++AGFT +E
Sbjct: 149 -GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE 207
Query: 246 RDSFSSLLDK-GFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R F LL DSFRHLYP AYT+W+YM ARS+N G +YF
Sbjct: 208 RQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMM-NARSKNVGWRLDYF 256
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLNVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|224543695|ref|ZP_03684234.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
gi|224523348|gb|EEF92453.1| exodeoxyribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 134/223 (60%), Gaps = 9/223 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV G+RAC+KK L+ K DADIF LQETK + Q + + P Y Y
Sbjct: 1 MKYVSWNVNGIRACLKKGFLESFKSLDADIFALQETKAQKDQ----IDLDIPGYTLYTND 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G + T++KP V+YG+G + + GR + +++ PN+ L +
Sbjct: 57 AIKKGYSGTAILTRMKPLSVSYGIGIEEYDQEGRVITLEFEDYYFVPCYTPNSKKELARI 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+EW+ F +L L+ KPVIL GDLNV+H IDL NP++N +AGF+ +ER +
Sbjct: 117 DYRMEWEDAFLAYLDALN--KPVILCGDLNVAHHEIDLKNPSSNHHNAGFSDQERSKMTE 174
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL G+ D+FR+LYP + AYT+WSYM K+ R RN G +YF
Sbjct: 175 LLSHGYIDTFRYLYPDKKDAYTWWSYMFKS-RERNAGWRIDYF 216
>gi|257883889|ref|ZP_05663542.1| AP endonuclease [Enterococcus faecium 1,231,501]
gi|430852149|ref|ZP_19469884.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1258]
gi|257819727|gb|EEV46875.1| AP endonuclease [Enterococcus faecium 1,231,501]
gi|430542731|gb|ELA82839.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1258]
Length = 250
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIICGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFVDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|430834375|ref|ZP_19452382.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0679]
gi|430485606|gb|ELA62512.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0679]
Length = 250
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYGLG ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNATYGLGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|340347509|ref|ZP_08670617.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433653537|ref|YP_007297391.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|339609205|gb|EGQ14080.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433304070|gb|AGB29885.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
Length = 266
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 142/240 (59%), Gaps = 25/240 (10%)
Query: 73 FKIASWNVAGLRACVKKEGLD-----------YIKKEDADIFCLQETKCHETQLPPEVKM 121
K SWNV GLRACVK + D Y K+ DAD FCLQETK Q + +
Sbjct: 1 MKFISWNVNGLRACVKPKTDDAGNVTSKGFEAYFKELDADFFCLQETKLQAGQ----IDL 56
Query: 122 KFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKN 180
+F Y++YW + K GY+G ++T+ +P VTYG+G +++H GR + + I
Sbjct: 57 QFDGYQSYWNYAEKKGYSGTAVFTRHEPLGVTYGIGKEEHDHEGRVITLEYPDFYLITCY 116
Query: 181 VPNAGAGLK------TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTT 234
PN+ +K L R+ W+ F E++++LD KPVI+ GDLNV+H+ +DL NP T
Sbjct: 117 TPNSQDTIKGELKPRRLGYRMTWEDDFREYMMRLDKNKPVIMCGDLNVAHEEMDLKNPKT 176
Query: 235 NTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
N +AGFT EER+ ++LL GF DSFR LYP++ Y++WSY + AR +NTG +YF
Sbjct: 177 NHNNAGFTDEEREKMTTLLGSGFLDSFRMLYPEQV-TYSWWSYRMR-AREKNTGWRIDYF 234
>gi|313680366|ref|YP_004058105.1| exodeoxyribonuclease III xth [Oceanithermus profundus DSM 14977]
gi|313153081|gb|ADR36932.1| exodeoxyribonuclease III Xth [Oceanithermus profundus DSM 14977]
Length = 252
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 127/218 (58%), Gaps = 5/218 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ASWNV GLRA +KK D ++ DAD+ LQE + E PPE+ Y+ YW
Sbjct: 1 MKLASWNVNGLRAALKKGFWDVVRGLDADVLGLQEVRAEE---PPELPEGLGGYRWYWNP 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ GYAGV + +V P VTYG+G + GR + + PNAG GL L
Sbjct: 58 GDRKGYAGVAVLVRVPPLDVTYGIGHDEFDEEGRVITLEYERYYVVNAYFPNAGRGLPRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+L +D+ +L L A K V+L+GDLNV+H+ ID+A P N +SAGFT EER +
Sbjct: 118 GYKLAFDQAIENYLEGLRARKGVVLMGDLNVAHREIDIARPKQNQKSAGFTPEERAWIDA 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC 289
L KG+ D+FRHL+P TGAYT+W+Y AR++N G
Sbjct: 178 FLKKGWIDTFRHLHPDATGAYTWWTY-RFNARAKNIGW 214
>gi|395244503|ref|ZP_10421467.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483150|emb|CCI82475.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 265
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 129/216 (59%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G RA ++ LD K+ +ADIF +Q+ + P EV + Y YW S
Sbjct: 13 KFISWNVNGFRAAMRHGFLDTFKELNADIFGMQDIRLS----PNEVSIDTTGYYQYWNYS 68
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ + G ++TK+KP V G+G + GR N +++ VP +G L+ LD
Sbjct: 69 KEKSFDGTAIFTKIKPLAVANGIGVSEFDQQGRTITLEYPNFYFVTTYVPFSGEQLQRLD 128
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ WD+ F ++L+KL+A KPVI+ GD++V+H+PIDLA P+ N AGFT +ERD F+ L
Sbjct: 129 FRIAWDQAFRKYLLKLEANKPVIIGGDMSVAHEPIDLAQPSENHHHAGFTEQERDDFTKL 188
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GFTD+FR+L+P Y+YWSY R +N G
Sbjct: 189 LNSGFTDTFRYLHPNEKDIYSYWSYRYH-GREKNEG 223
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 131/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLVSWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV ++K +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 LKKGYSGVVTFSKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 132/216 (61%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC+ K +D+ +AD+FC+QE+K + Q E F Y +W +
Sbjct: 2 KLISWNVNGLRACMTKGFMDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+GV +TK +P V+YG+ + ++ GR + + + PN+ L L
Sbjct: 58 IKKGYSGVVTFTKKEPLSVSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLS 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W+ F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ L
Sbjct: 118 YRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 178 LNAGFIDTFRYFYPNKEKAYTWWSYMQQ-ARDKDIG 212
>gi|221194898|ref|ZP_03567954.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
gi|221184801|gb|EEE17192.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
Length = 281
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 138/225 (61%), Gaps = 9/225 (4%)
Query: 73 FKIASWNVAGLRACVKKE--GLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYW 130
+K ASWNV GLRA +KK+ + + DADIF LQETK E Q V + P Y W
Sbjct: 29 YKFASWNVNGLRAVLKKDPSFTEIFETIDADIFALQETKLQEGQ----VDLDIPSYFQTW 84
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ + GY+G ++++ +P +V +G+ ++ GR C +++ PN+ L
Sbjct: 85 NYAERKGYSGTAVFSREEPLQVIRQIGSPVADNEGRVCALEFDRFWFVDVYTPNSKEQLA 144
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD+RL WD+ + + + +L A+KP+I GD NV+H IDL NP++N ++AGF+ EER+SF
Sbjct: 145 RLDERLVWDERYRDFIAELSAQKPLITCGDFNVAHTEIDLKNPSSNHKNAGFSDEERESF 204
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ LLD GFTD+FR+ +P TGAY++WSY AR N G +YF
Sbjct: 205 TKLLDAGFTDTFRYRHPDVTGAYSWWSYRFN-ARKNNAGWRIDYF 248
>gi|169347307|ref|ZP_02866245.1| hypothetical protein CLOSPI_00022 [Clostridium spiroforme DSM 1552]
gi|169293924|gb|EDS76057.1| exodeoxyribonuclease III [Clostridium spiroforme DSM 1552]
Length = 252
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 133/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+ K D +K DADIFC+QETK E Q+ E Y Y S+
Sbjct: 2 KLISWNVNGIRACINKGFYDILKDFDADIFCIQETKMQEGQIEIEDH----GYYLYMNSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKVKP +YG+ + ++ GR + + PN+ GLK L+
Sbjct: 58 VKKGYSGTLVFTKVKPLSYSYGINIEEHDQEGRVITLEYNKFYLVNCYTPNSQDGLKRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W+ F +L L+ +KPVIL GDLNV+H+ IDL NP TN ++AGF+ EER + L
Sbjct: 118 YRQVWEDDFLAYLKSLEEKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTQL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+LYP GAY++WSY AR N G +YF
Sbjct: 178 LNHGFIDTFRYLYPDLQGAYSWWSY-RFNARKNNAGWRIDYF 218
>gi|69245045|ref|ZP_00603203.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium DO]
gi|314939354|ref|ZP_07846596.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a04]
gi|314944126|ref|ZP_07850782.1| exodeoxyribonuclease III [Enterococcus faecium TX0133C]
gi|314949042|ref|ZP_07852404.1| exodeoxyribonuclease III [Enterococcus faecium TX0082]
gi|314953542|ref|ZP_07856453.1| exodeoxyribonuclease III [Enterococcus faecium TX0133A]
gi|314994499|ref|ZP_07859775.1| exodeoxyribonuclease III [Enterococcus faecium TX0133B]
gi|314998115|ref|ZP_07863002.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a01]
gi|389867864|ref|YP_006375287.1| exodeoxyribonuclease III [Enterococcus faecium DO]
gi|424789721|ref|ZP_18216358.1| exodeoxyribonuclease III [Enterococcus faecium V689]
gi|424802562|ref|ZP_18228061.1| exodeoxyribonuclease III [Enterococcus faecium S447]
gi|424844097|ref|ZP_18268717.1| exodeoxyribonuclease III [Enterococcus faecium R501]
gi|424856557|ref|ZP_18280766.1| exodeoxyribonuclease III [Enterococcus faecium R499]
gi|424898737|ref|ZP_18322301.1| exodeoxyribonuclease III [Enterococcus faecium R497]
gi|424950070|ref|ZP_18365248.1| exodeoxyribonuclease III [Enterococcus faecium R496]
gi|424953364|ref|ZP_18368333.1| exodeoxyribonuclease III [Enterococcus faecium R494]
gi|424956623|ref|ZP_18371393.1| exodeoxyribonuclease III [Enterococcus faecium R446]
gi|424959074|ref|ZP_18373681.1| exodeoxyribonuclease III [Enterococcus faecium P1986]
gi|424963467|ref|ZP_18377681.1| exodeoxyribonuclease III [Enterococcus faecium P1190]
gi|424967725|ref|ZP_18381407.1| exodeoxyribonuclease III [Enterococcus faecium P1140]
gi|424970445|ref|ZP_18383957.1| exodeoxyribonuclease III [Enterococcus faecium P1139]
gi|424974530|ref|ZP_18387759.1| exodeoxyribonuclease III [Enterococcus faecium P1137]
gi|424978847|ref|ZP_18391732.1| exodeoxyribonuclease III [Enterococcus faecium P1123]
gi|424980945|ref|ZP_18393702.1| exodeoxyribonuclease III [Enterococcus faecium ERV99]
gi|424982894|ref|ZP_18395511.1| exodeoxyribonuclease III [Enterococcus faecium ERV69]
gi|424987691|ref|ZP_18400056.1| exodeoxyribonuclease III [Enterococcus faecium ERV38]
gi|424991509|ref|ZP_18403654.1| exodeoxyribonuclease III [Enterococcus faecium ERV26]
gi|424994871|ref|ZP_18406788.1| exodeoxyribonuclease III [Enterococcus faecium ERV168]
gi|424999026|ref|ZP_18410676.1| exodeoxyribonuclease III [Enterococcus faecium ERV165]
gi|424999959|ref|ZP_18411546.1| exodeoxyribonuclease III [Enterococcus faecium ERV161]
gi|425003158|ref|ZP_18414540.1| exodeoxyribonuclease III [Enterococcus faecium ERV102]
gi|425007472|ref|ZP_18418599.1| exodeoxyribonuclease III [Enterococcus faecium ERV1]
gi|425012108|ref|ZP_18422948.1| exodeoxyribonuclease III [Enterococcus faecium E422]
gi|425013534|ref|ZP_18424261.1| exodeoxyribonuclease III [Enterococcus faecium E417]
gi|425017356|ref|ZP_18427864.1| exodeoxyribonuclease III [Enterococcus faecium C621]
gi|425021463|ref|ZP_18431716.1| exodeoxyribonuclease III [Enterococcus faecium C497]
gi|425029095|ref|ZP_18435294.1| exodeoxyribonuclease III [Enterococcus faecium C1904]
gi|425033598|ref|ZP_18438554.1| exodeoxyribonuclease III [Enterococcus faecium 515]
gi|425034552|ref|ZP_18439436.1| exodeoxyribonuclease III [Enterococcus faecium 514]
gi|425038640|ref|ZP_18443244.1| exodeoxyribonuclease III [Enterococcus faecium 513]
gi|425042587|ref|ZP_18446908.1| exodeoxyribonuclease III [Enterococcus faecium 511]
gi|425044172|ref|ZP_18448350.1| exodeoxyribonuclease III [Enterococcus faecium 510]
gi|425049630|ref|ZP_18453458.1| exodeoxyribonuclease III [Enterococcus faecium 509]
gi|425051314|ref|ZP_18454984.1| exodeoxyribonuclease III [Enterococcus faecium 506]
gi|425059576|ref|ZP_18462909.1| exodeoxyribonuclease III [Enterococcus faecium 503]
gi|68196046|gb|EAN10478.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium DO]
gi|313587883|gb|EFR66728.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a01]
gi|313591110|gb|EFR69955.1| exodeoxyribonuclease III [Enterococcus faecium TX0133B]
gi|313594421|gb|EFR73266.1| exodeoxyribonuclease III [Enterococcus faecium TX0133A]
gi|313597294|gb|EFR76139.1| exodeoxyribonuclease III [Enterococcus faecium TX0133C]
gi|313641358|gb|EFS05938.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a04]
gi|313644519|gb|EFS09099.1| exodeoxyribonuclease III [Enterococcus faecium TX0082]
gi|388533113|gb|AFK58305.1| exodeoxyribonuclease III [Enterococcus faecium DO]
gi|402919549|gb|EJX40134.1| exodeoxyribonuclease III [Enterococcus faecium S447]
gi|402920364|gb|EJX40884.1| exodeoxyribonuclease III [Enterococcus faecium R501]
gi|402921768|gb|EJX42193.1| exodeoxyribonuclease III [Enterococcus faecium V689]
gi|402929762|gb|EJX49492.1| exodeoxyribonuclease III [Enterococcus faecium R499]
gi|402932351|gb|EJX51867.1| exodeoxyribonuclease III [Enterococcus faecium R497]
gi|402933877|gb|EJX53281.1| exodeoxyribonuclease III [Enterococcus faecium R496]
gi|402939250|gb|EJX58182.1| exodeoxyribonuclease III [Enterococcus faecium R494]
gi|402945602|gb|EJX63940.1| exodeoxyribonuclease III [Enterococcus faecium R446]
gi|402949215|gb|EJX67295.1| exodeoxyribonuclease III [Enterococcus faecium P1190]
gi|402951471|gb|EJX69397.1| exodeoxyribonuclease III [Enterococcus faecium P1986]
gi|402953715|gb|EJX71407.1| exodeoxyribonuclease III [Enterococcus faecium P1140]
gi|402956143|gb|EJX73618.1| exodeoxyribonuclease III [Enterococcus faecium P1137]
gi|402960194|gb|EJX77359.1| exodeoxyribonuclease III [Enterococcus faecium P1123]
gi|402961733|gb|EJX78737.1| exodeoxyribonuclease III [Enterococcus faecium P1139]
gi|402964834|gb|EJX81589.1| exodeoxyribonuclease III [Enterococcus faecium ERV99]
gi|402972757|gb|EJX88933.1| exodeoxyribonuclease III [Enterococcus faecium ERV69]
gi|402973819|gb|EJX89911.1| exodeoxyribonuclease III [Enterococcus faecium ERV38]
gi|402976580|gb|EJX92460.1| exodeoxyribonuclease III [Enterococcus faecium ERV26]
gi|402978889|gb|EJX94596.1| exodeoxyribonuclease III [Enterococcus faecium ERV168]
gi|402980958|gb|EJX96520.1| exodeoxyribonuclease III [Enterococcus faecium ERV165]
gi|402990162|gb|EJY05046.1| exodeoxyribonuclease III [Enterococcus faecium ERV161]
gi|402992555|gb|EJY07247.1| exodeoxyribonuclease III [Enterococcus faecium ERV102]
gi|402994365|gb|EJY08901.1| exodeoxyribonuclease III [Enterococcus faecium E422]
gi|402994911|gb|EJY09408.1| exodeoxyribonuclease III [Enterococcus faecium ERV1]
gi|403000822|gb|EJY14913.1| exodeoxyribonuclease III [Enterococcus faecium E417]
gi|403004470|gb|EJY18273.1| exodeoxyribonuclease III [Enterococcus faecium C621]
gi|403004532|gb|EJY18326.1| exodeoxyribonuclease III [Enterococcus faecium C1904]
gi|403006678|gb|EJY20306.1| exodeoxyribonuclease III [Enterococcus faecium C497]
gi|403009330|gb|EJY22785.1| exodeoxyribonuclease III [Enterococcus faecium 515]
gi|403019114|gb|EJY31740.1| exodeoxyribonuclease III [Enterococcus faecium 513]
gi|403020199|gb|EJY32755.1| exodeoxyribonuclease III [Enterococcus faecium 514]
gi|403022989|gb|EJY35297.1| exodeoxyribonuclease III [Enterococcus faecium 511]
gi|403026721|gb|EJY38668.1| exodeoxyribonuclease III [Enterococcus faecium 509]
gi|403030625|gb|EJY42301.1| exodeoxyribonuclease III [Enterococcus faecium 510]
gi|403037892|gb|EJY49141.1| exodeoxyribonuclease III [Enterococcus faecium 506]
gi|403043490|gb|EJY54397.1| exodeoxyribonuclease III [Enterococcus faecium 503]
Length = 269
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 128/222 (57%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW
Sbjct: 20 LKFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNY 75
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++ K TYG+G ++ GR + F + PN+ + LK L
Sbjct: 76 AERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRL 135
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S
Sbjct: 136 DYRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSR 195
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LLD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 196 LLDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 237
>gi|425056645|ref|ZP_18460091.1| exodeoxyribonuclease III [Enterococcus faecium 505]
gi|403031334|gb|EJY42950.1| exodeoxyribonuclease III [Enterococcus faecium 505]
Length = 269
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 128/222 (57%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW
Sbjct: 20 LKFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNY 75
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++ K TYG+G ++ GR + F + PN+ + LK L
Sbjct: 76 AERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRL 135
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S
Sbjct: 136 DYRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSR 195
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LLD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 196 LLDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 237
>gi|227552171|ref|ZP_03982220.1| exodeoxyribonuclease III [Enterococcus faecium TX1330]
gi|257892875|ref|ZP_05672528.1| exodeoxyribonuclease, partial [Enterococcus faecium 1,231,408]
gi|227178703|gb|EEI59675.1| exodeoxyribonuclease III [Enterococcus faecium TX1330]
gi|257829254|gb|EEV55861.1| exodeoxyribonuclease [Enterococcus faecium 1,231,408]
Length = 269
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 128/222 (57%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW
Sbjct: 20 LKFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNY 75
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++ K TYG+G ++ GR + F + PN+ + LK L
Sbjct: 76 AERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRL 135
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S
Sbjct: 136 DYRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSR 195
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LLD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 196 LLDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 237
>gi|425057149|ref|ZP_18460578.1| exodeoxyribonuclease III [Enterococcus faecium 504]
gi|403041007|gb|EJY52049.1| exodeoxyribonuclease III [Enterococcus faecium 504]
Length = 269
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 128/222 (57%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW
Sbjct: 20 LKFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNY 75
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++ K TYG+G ++ GR + F + PN+ + LK L
Sbjct: 76 AERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRL 135
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S
Sbjct: 136 DYRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSR 195
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LLD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 196 LLDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 237
>gi|308233639|ref|ZP_07664376.1| exodeoxyribonuclease III Xth [Atopobium vaginae DSM 15829]
gi|328944401|ref|ZP_08241863.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
gi|327490985|gb|EGF22762.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
Length = 259
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 133/225 (59%), Gaps = 9/225 (4%)
Query: 73 FKIASWNVAGLRACVKKE--GLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYW 130
++ SWNV GLRA +KKE L+ +ADIF +QETK Q V + Y W
Sbjct: 7 YRFVSWNVNGLRATLKKEPSFLEIFSTLNADIFAIQETKLQAGQ----VDLDLDGYTQTW 62
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ + GY+G ++++ KP + +G K ++ GR C +++ PN+ L
Sbjct: 63 SYAERKGYSGTAVFSREKPLSTIHTIGCKAADNEGRVCALEFEKFWFVDVYTPNSKNELA 122
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD+R+EWDK + E LV LDA+KPVI GD NV+H+ IDL NP +N +AGF+ EER F
Sbjct: 123 RLDERMEWDKAYREFLVGLDAQKPVITCGDFNVAHQEIDLKNPASNHENAGFSDEERAGF 182
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
SSLL GFTD+FR +P GAY++WSY ++ R RN G +YF
Sbjct: 183 SSLLGAGFTDTFRSAHPTLEGAYSWWSYRMRS-RERNAGWRIDYF 226
>gi|366053865|ref|ZP_09451587.1| exodeoxyribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 256
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 132/223 (59%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE-YKTYWLS 132
K SWNV GLRA V +D + DAD FC+QETK Q + +K P+ Y YW
Sbjct: 2 KFISWNVNGLRAAVTHGFMDTFNQLDADFFCVQETKLQLGQ----IDLKLPDNYYQYWNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK KP + G+G +H GR + + I PN+G LK L
Sbjct: 58 ADKKGYSGTAIFTKHKPLNASLGIGIDEFDHEGRVITLEYPSFYLITCYTPNSGQQLKRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R W+K F +++ +L A+K VI GDLNV+H+ IDL NP++N +AGFT EER+ F+
Sbjct: 118 DFRQNWNKAFLDYINQLSAKKDVIFCGDLNVAHETIDLKNPSSNHHAAGFTDEERNDFTH 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ F D++RH YP+ T Y++WSY +R RN G +YF
Sbjct: 178 LLESNFVDTYRHFYPEVTEQYSWWSYRFH-SRDRNAGWRIDYF 219
>gi|257886665|ref|ZP_05666318.1| AP endonuclease [Enterococcus faecium 1,141,733]
gi|257895240|ref|ZP_05674893.1| AP endonuclease [Enterococcus faecium Com12]
gi|293377228|ref|ZP_06623433.1| exodeoxyribonuclease III [Enterococcus faecium PC4.1]
gi|431752459|ref|ZP_19541142.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2620]
gi|431757305|ref|ZP_19545936.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3083]
gi|431762576|ref|ZP_19551136.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3548]
gi|257822719|gb|EEV49651.1| AP endonuclease [Enterococcus faecium 1,141,733]
gi|257831805|gb|EEV58226.1| AP endonuclease [Enterococcus faecium Com12]
gi|292644089|gb|EFF62194.1| exodeoxyribonuclease III [Enterococcus faecium PC4.1]
gi|430613950|gb|ELB50949.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2620]
gi|430619594|gb|ELB56421.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3083]
gi|430623625|gb|ELB60304.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3548]
Length = 250
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|431779197|ref|ZP_19567393.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4389]
gi|430642462|gb|ELB78239.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4389]
Length = 250
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEETFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|431033474|ref|ZP_19491320.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1590]
gi|430564575|gb|ELB03759.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1590]
Length = 250
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|293571415|ref|ZP_06682444.1| exodeoxyribonuclease III [Enterococcus faecium E980]
gi|430819435|ref|ZP_19438090.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0045]
gi|431736951|ref|ZP_19525908.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1972]
gi|291608506|gb|EFF37799.1| exodeoxyribonuclease III [Enterococcus faecium E980]
gi|430440618|gb|ELA50858.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0045]
gi|430599606|gb|ELB37304.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1972]
Length = 250
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|257881925|ref|ZP_05661578.1| AP endonuclease [Enterococcus faecium 1,231,502]
gi|257890085|ref|ZP_05669738.1| AP endonuclease [Enterococcus faecium 1,231,410]
gi|260558703|ref|ZP_05830892.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium C68]
gi|293563951|ref|ZP_06678361.1| exodeoxyribonuclease III [Enterococcus faecium E1162]
gi|294617705|ref|ZP_06697329.1| exodeoxyribonuclease III [Enterococcus faecium E1679]
gi|294623736|ref|ZP_06702567.1| exodeoxyribonuclease III [Enterococcus faecium U0317]
gi|383327975|ref|YP_005353859.1| exodeoxyribonuclease III [Enterococcus faecium Aus0004]
gi|415888406|ref|ZP_11549116.1| exodeoxyribonuclease III [Enterococcus faecium E4453]
gi|427396653|ref|ZP_18889412.1| exodeoxyribonuclease III (xth) [Enterococcus durans FB129-CNAB-4]
gi|430831423|ref|ZP_19449474.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0333]
gi|430846773|ref|ZP_19464627.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1133]
gi|430856040|ref|ZP_19473744.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1392]
gi|431535444|ref|ZP_19517290.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1731]
gi|431638743|ref|ZP_19523370.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1904]
gi|431747991|ref|ZP_19536755.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2297]
gi|431753983|ref|ZP_19542648.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2883]
gi|431769960|ref|ZP_19558364.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1644]
gi|431774095|ref|ZP_19562408.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2369]
gi|431776933|ref|ZP_19565190.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2560]
gi|431781241|ref|ZP_19569389.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6012]
gi|431784869|ref|ZP_19572905.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6045]
gi|257817583|gb|EEV44911.1| AP endonuclease [Enterococcus faecium 1,231,502]
gi|257826445|gb|EEV53071.1| AP endonuclease [Enterococcus faecium 1,231,410]
gi|260075162|gb|EEW63475.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium C68]
gi|291596042|gb|EFF27311.1| exodeoxyribonuclease III [Enterococcus faecium E1679]
gi|291596861|gb|EFF28081.1| exodeoxyribonuclease III [Enterococcus faecium U0317]
gi|291604080|gb|EFF33604.1| exodeoxyribonuclease III [Enterococcus faecium E1162]
gi|364094896|gb|EHM37011.1| exodeoxyribonuclease III [Enterococcus faecium E4453]
gi|378937669|gb|AFC62741.1| exodeoxyribonuclease III [Enterococcus faecium Aus0004]
gi|425723323|gb|EKU86214.1| exodeoxyribonuclease III (xth) [Enterococcus durans FB129-CNAB-4]
gi|430481306|gb|ELA58462.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0333]
gi|430538327|gb|ELA78619.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1133]
gi|430545329|gb|ELA85303.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1392]
gi|430595015|gb|ELB32963.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1731]
gi|430602222|gb|ELB39801.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1904]
gi|430614867|gb|ELB51838.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2297]
gi|430619906|gb|ELB56709.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2883]
gi|430634646|gb|ELB70761.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2369]
gi|430636029|gb|ELB72104.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1644]
gi|430639874|gb|ELB75728.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2560]
gi|430648707|gb|ELB84107.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6045]
gi|430649602|gb|ELB84970.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6012]
Length = 250
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|293557096|ref|ZP_06675652.1| exodeoxyribonuclease III [Enterococcus faecium E1039]
gi|293567361|ref|ZP_06678711.1| exodeoxyribonuclease III [Enterococcus faecium E1071]
gi|406581419|ref|ZP_11056574.1| exodeoxyribonuclease III [Enterococcus sp. GMD4E]
gi|406591645|ref|ZP_11065904.1| exodeoxyribonuclease III [Enterococcus sp. GMD1E]
gi|416134092|ref|ZP_11598208.1| exodeoxyribonuclease III [Enterococcus faecium E4452]
gi|430822986|ref|ZP_19441561.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0120]
gi|430825958|ref|ZP_19444156.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0164]
gi|430828054|ref|ZP_19446184.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0269]
gi|430835361|ref|ZP_19453351.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0680]
gi|430838568|ref|ZP_19456514.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0688]
gi|430843577|ref|ZP_19461476.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1050]
gi|430857677|ref|ZP_19475310.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1552]
gi|430860673|ref|ZP_19478272.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1573]
gi|430865725|ref|ZP_19481300.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1574]
gi|430882969|ref|ZP_19484174.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1575]
gi|430946137|ref|ZP_19485613.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1576]
gi|431002064|ref|ZP_19488655.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1578]
gi|431149614|ref|ZP_19499472.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1620]
gi|431230291|ref|ZP_19502494.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1622]
gi|431250993|ref|ZP_19503927.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1623]
gi|431301513|ref|ZP_19507832.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1626]
gi|431375556|ref|ZP_19510351.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1627]
gi|431742657|ref|ZP_19531542.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2071]
gi|431746687|ref|ZP_19535512.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2134]
gi|431764630|ref|ZP_19553167.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4215]
gi|431767687|ref|ZP_19556134.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1321]
gi|447912130|ref|YP_007393542.1| Exodeoxyribonuclease III [Enterococcus faecium NRRL B-2354]
gi|291589963|gb|EFF21761.1| exodeoxyribonuclease III [Enterococcus faecium E1071]
gi|291600740|gb|EFF31036.1| exodeoxyribonuclease III [Enterococcus faecium E1039]
gi|364092709|gb|EHM35053.1| exodeoxyribonuclease III [Enterococcus faecium E4452]
gi|404452675|gb|EJZ99832.1| exodeoxyribonuclease III [Enterococcus sp. GMD4E]
gi|404467425|gb|EKA12542.1| exodeoxyribonuclease III [Enterococcus sp. GMD1E]
gi|430442915|gb|ELA52936.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0120]
gi|430445666|gb|ELA55396.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0164]
gi|430484135|gb|ELA61170.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0269]
gi|430489352|gb|ELA65966.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0680]
gi|430491810|gb|ELA68262.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0688]
gi|430497436|gb|ELA73473.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1050]
gi|430546887|gb|ELA86829.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1552]
gi|430552071|gb|ELA91821.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1573]
gi|430552790|gb|ELA92516.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1574]
gi|430556526|gb|ELA96024.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1575]
gi|430558609|gb|ELA98021.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1576]
gi|430562184|gb|ELB01435.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1578]
gi|430574277|gb|ELB13055.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1622]
gi|430575503|gb|ELB14219.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1620]
gi|430578900|gb|ELB17447.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1623]
gi|430580703|gb|ELB19170.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1626]
gi|430583020|gb|ELB21419.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1627]
gi|430607891|gb|ELB45187.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2071]
gi|430608589|gb|ELB45835.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2134]
gi|430630640|gb|ELB66995.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1321]
gi|430630770|gb|ELB67119.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4215]
gi|445187839|gb|AGE29481.1| Exodeoxyribonuclease III [Enterococcus faecium NRRL B-2354]
Length = 250
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|431514988|ref|ZP_19516181.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1634]
gi|430586004|gb|ELB24272.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1634]
Length = 250
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNTTYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|430841915|ref|ZP_19459832.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1007]
gi|431741213|ref|ZP_19530119.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2039]
gi|430493733|gb|ELA70024.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1007]
gi|430601870|gb|ELB39452.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2039]
Length = 250
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|317056539|ref|YP_004105006.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
gi|315448808|gb|ADU22372.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
Length = 250
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 128/217 (58%), Gaps = 9/217 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQ--LPPEVKMKFPEYKTYWL 131
K SWNV G RAC++K D+ DADIFC+QETK Q PE +K Y+
Sbjct: 2 KFISWNVNGFRACLQKGFGDFFTAADADIFCIQETKMQPDQADFSPEGYLK------YFH 55
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
S+ K GY+G +YTK +P +V +GL + GR + +++ VPNA LK +
Sbjct: 56 SAVKKGYSGTAVYTKKEPLEVKFGLNGTHTDEGRVITCEFEDYYFVCCYVPNAQNELKRI 115
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+E++ +L +LD KPV+ GDLNV+H+ IDL NP +N +AGF+ EER F+
Sbjct: 116 DYRMEFEDDMRAYLSQLDKTKPVVYCGDLNVAHEEIDLKNPKSNAGNAGFSDEERGKFTE 175
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
LL GF D+FR LYP + GAY++WSY AR N G
Sbjct: 176 LLGAGFADTFRRLYPDKAGAYSWWSYRF-NARKNNAG 211
>gi|261208808|ref|ZP_05923245.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium TC 6]
gi|289566402|ref|ZP_06446829.1| exodeoxyribonuclease III [Enterococcus faecium D344SRF]
gi|294614472|ref|ZP_06694388.1| exodeoxyribonuclease III [Enterococcus faecium E1636]
gi|430849109|ref|ZP_19466891.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1185]
gi|260077310|gb|EEW65030.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium TC 6]
gi|289161777|gb|EFD09650.1| exodeoxyribonuclease III [Enterococcus faecium D344SRF]
gi|291592780|gb|EFF24373.1| exodeoxyribonuclease III [Enterococcus faecium E1636]
gi|430538322|gb|ELA78615.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1185]
Length = 250
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|406931444|gb|EKD66730.1| hypothetical protein ACD_49C00017G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 134/222 (60%), Gaps = 3/222 (1%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ S+NV G+R+ ++K LDY+ E+ DI LQE K E +LP ++ + Y+ YW S+
Sbjct: 2 KLISFNVNGIRSNIQKGFLDYLISENPDIIGLQEVKAQENELPIKIDLASLWYEIYWNSA 61
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K Y+G ++TK+KP V+Y L +++ R N +++ PNA L+ LD
Sbjct: 62 NKKWYSGTAIFTKIKPLSVSYWLWLAEHDEEWRIITLEFENFYFVNVYTPNAKRELERLD 121
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R WD LF ++L +L+ KPVI D NV+H+ IDL NP TN +AGFT EER+ FS
Sbjct: 122 YRQLWDSLFLDYLKRLEQNKPVITCWDFNVAHQEIDLTNPKTNKWNAGFTPEEREWFSKF 181
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ GF D+FR+ YP +T Y++WS + +R+RN G +YF
Sbjct: 182 ISSGFIDTFRYFYPDKTWEYSWWSNFA-NSRARNIGWRIDYF 222
>gi|340624333|ref|YP_004742786.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
gi|339904601|gb|AEK20043.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
Length = 249
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 139/223 (62%), Gaps = 10/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+K +D++++E DI C+QETK Q V++ Y YW +
Sbjct: 2 KMLSWNVNGIRACLKNGFMDFLERESPDIMCIQETKVQSGQ----VQLGLDGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNV--PNAGAGLKTL 191
+ GY+G ++TK+KPN+V+YG+G NEH G + Y NV PN+ GL L
Sbjct: 58 ERKGYSGTAIFTKIKPNEVSYGIGN-NEHDGEGRVITLKFDEYYLLNVYTPNSQRGLTRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R +WD+ F ++ L+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER+ F +
Sbjct: 117 EYRQKWDQDFLNYVKTLENKKPVIFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERNGFDN 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+++ GF D+FR + K Y++WSY AR++N G +YF
Sbjct: 177 IVNSGFLDTFRE-FNKEPDNYSWWSYRF-NARAKNIGWRIDYF 217
>gi|431077776|ref|ZP_19495241.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1604]
gi|431112344|ref|ZP_19497720.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1613]
gi|430566191|gb|ELB05312.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1604]
gi|430569298|gb|ELB08315.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1613]
Length = 250
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDIPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RAC+KK LD ++ E D F +QETK E Q ++ Y YW S+
Sbjct: 3 KFISWNVNGIRACIKKGFLDVLEGESPDYFAVQETKMQEGQ----EEILTNGYHQYWDSA 58
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G + +K + + G+G + ++ GR ++ + + + VPN+ L LD
Sbjct: 59 KRKGYSGTLVLSKEEAVSTSKGIGIEEHDEEGRVVTADFKDFYLVNVYVPNSKPELARLD 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W+ F +++VKL+ EKPVI+ GDLNV+H IDL NP TN R+ GFT EER+ F+ L
Sbjct: 119 YRQHWEDDFRDYVVKLNKEKPVIICGDLNVAHTEIDLKNPKTNRRNPGFTDEEREKFTEL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GFTD+FR+ YP + GAYT+WSY AR N G +YF
Sbjct: 179 LEAGFTDTFRYKYPDKEGAYTWWSYRF-NARKNNAGWRIDYF 219
>gi|363893051|ref|ZP_09320191.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402837946|ref|ZP_10886461.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361961782|gb|EHL14961.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402274377|gb|EJU23561.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 251
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 129/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +K D K DAD FCLQE K E Q +++ F Y YW +
Sbjct: 2 KFVSWNVNGLRAVREKGFEDIFKNFDADAFCLQEIKLQENQ----IELHFDGYYEYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YTK KP V YGLG + ++ GR N + PNA L L
Sbjct: 58 NKKGYSGTAIYTKHKPIDVHYGLGIEEHDMEGRLITLEYENYYIATVYTPNAQPELARLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +W++ F E+ KLD +KPVI+ GD+NV+H+ IDL NP N ++ GF+ EER+ F+ L
Sbjct: 118 YRQKWEEDFREYFKKLDEKKPVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREKFTLL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP +T Y++WSY AR N G +YF
Sbjct: 178 LNAGFIDTFRYFYPDKTDEYSWWSYRF-NARKNNAGWRIDYF 218
>gi|365832959|ref|ZP_09374485.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 3_3_56FAA]
gi|374627690|ref|ZP_09700093.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 8_2_54BFAA]
gi|365259792|gb|EHM89775.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 3_3_56FAA]
gi|373913138|gb|EHQ44980.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 8_2_54BFAA]
Length = 251
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 137/223 (61%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RAC+ K D +K+ ADIFC+QETK E Q ++++ Y TY S
Sbjct: 1 MKLVSWNVNGIRACITKGFYDVLKESKADIFCVQETKMQEGQ----IELEKHGYYTYMNS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G +++K KP +YG+G + ++H GR + + PN+ LK L
Sbjct: 57 AEKKGYSGTLVFSKEKPLNYSYGIGIEEHDHEGRVVTLEYEKFYLVNCYTPNSQNELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L L+ KPVIL GDLNV+++ IDL NP TN ++AGF+ EER ++
Sbjct: 117 DYRMHWEDDFLAYLKSLEKSKPVILCGDLNVAYQEIDLKNPKTNRKNAGFSDEERAKMTN 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GF D++R+LYP + G Y++WSY AR N G +YF
Sbjct: 177 LLENGFIDTYRYLYPDQEGVYSWWSYRF-NARKNNAGWRIDYF 218
>gi|23097966|ref|NP_691432.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
gi|22776190|dbj|BAC12467.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
Length = 269
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 130/221 (58%), Gaps = 7/221 (3%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
SWNV G+RACV+K LD+ ++ AD FC+QE+K E Q +++ Y YW +
Sbjct: 3 FISWNVNGIRACVRKGFLDFFQEMGADFFCIQESKLQEGQ----IQLDLDGYYQYWNYAE 58
Query: 135 KAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
+ GY+G ++TK +P V YG+ + N E GR + + + PN+ L L+
Sbjct: 59 RKGYSGTAIFTKWEPLHVFYGIDSNNYEPEGRIITLEYESFYLVNVYTPNSKRDLTRLED 118
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
RLEW+ ++L KL+ +KP++ GDLNV+H IDL N TN ++GFT EER S LL
Sbjct: 119 RLEWEDRLFDYLQKLNKKKPLVYCGDLNVAHHEIDLRNDKTNHGNSGFTKEERSKMSRLL 178
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
D GF D+ RH +P+ +T+WSYM KT R RN G +YF
Sbjct: 179 DAGFVDTLRHFHPEADDIFTWWSYM-KTIRERNIGWRIDYF 218
>gi|409996804|ref|YP_006751205.1| exodeoxyribonuclease [Lactobacillus casei W56]
gi|406357816|emb|CCK22086.1| Exodeoxyribonuclease [Lactobacillus casei W56]
Length = 290
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 138/234 (58%), Gaps = 8/234 (3%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
N+ LG K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++
Sbjct: 28 NRNASLGVNHLMKLISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VEL 83
Query: 122 KFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKN 180
P Y Y+ + + GY+G ++TK +P VTYG+G +++ GR N + +
Sbjct: 84 DLPGYHQYFNYAERKGYSGTAIFTKHEPLNVTYGMGVPEHDTEGRIITLEYPNFYLMTVY 143
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
PN+G LK LD R +WDK F + +L A+KP++ GDLNV+H+ IDL N TN +AG
Sbjct: 144 TPNSGGELKRLDYRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAG 203
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER F+ LD GF D+FR+LYP T Y++WSY AR+ N G +YF
Sbjct: 204 FTDEERADFTKQLDSGFIDTFRNLYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 255
>gi|365130338|ref|ZP_09341407.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620249|gb|EHL71547.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
Length = 251
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 123/222 (55%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G RA + K D + AD+ CLQETK P + + P Y YW S+
Sbjct: 2 KLISWNVNGFRAILGKGFADIFEGFGADVVCLQETKMQ----PGQAEFSPPGYHQYWYSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++T+++P V YG+G ++ H GR F + PN+ L L
Sbjct: 58 EKKGYSGTAVFTRMEPLSVRYGIGKEEHSHEGRAITLEFEQFFLVNVYTPNSQNELARLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ +L LD EKPV+ GDLNV+H+ IDL NP N SAGF+ EER + L
Sbjct: 118 YRMQWEDDLRAYLCALDTEKPVVYCGDLNVAHREIDLKNPKQNIHSAGFSYEERQKMTDL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FR LYP G YT+WSY + AR N G +YF
Sbjct: 178 LMSGFVDTFRALYPDAAGRYTWWSYFRR-ARETNAGWRIDYF 218
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK+ + ++ +AD+F +QETK QL + P Y Y+ +
Sbjct: 2 KLISWNVNGLRAVVKKDFVTTFQQLNADVFSIQETKMQAGQL----DLDLPGYHQYFFYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +++K +P V GLG + + GR + + I PN+ LK +D
Sbjct: 58 KKKGYSGTAVFSKAEPISVKQGLGIEEFDDEGRTITLEFPDYYLINSYTPNSQPKLKRVD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ +D + E++++L A+KPVIL GDLNV+H+ IDL NP TN ++ GF+ +ERD FS L
Sbjct: 118 YRMRYDDVLREYMLQLSADKPVILCGDLNVAHEEIDLKNPKTNHKNPGFSDQERDKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF DSFR L+P+ Y++WSY AR N G +YF
Sbjct: 178 LDSGFIDSFRSLHPQEI-KYSWWSYRF-NARKNNAGWRIDYF 217
>gi|297583616|ref|YP_003699396.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
gi|297142073|gb|ADH98830.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
Length = 254
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 134/223 (60%), Gaps = 8/223 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC++K L + ++ AD+F +QE K E Q V + Y+ YW +
Sbjct: 2 KLISWNVNGLRACIRKGFLSFFEEAGADLFAVQEIKLQEGQ----VDLDLQGYRQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTY-GLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
K GY+G ++TKV+P +V G+G + + GR + F + PN+ L L
Sbjct: 58 EKKGYSGTAVFTKVEPLRVFRNGVGNERQQSEGRILTLEFASFFLVNVYTPNSQRDLARL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+RL+W+ F+ +L +L+ EKPVI+ GD+NV+H+ IDL N +N ++GFT EER +
Sbjct: 118 HERLQWEDAFYAYLQELENEKPVIVCGDMNVAHEEIDLRNAKSNRGNSGFTTEERAKMTR 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L + DS+R+ YP + GAYT+WSYM KT R RN G +YF
Sbjct: 178 LQSEWLIDSYRYYYPDQEGAYTWWSYM-KTVRERNIGWRIDYF 219
>gi|407014279|gb|EKE28316.1| hypothetical protein ACD_3C00079G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 131/222 (59%), Gaps = 3/222 (1%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV +RA +KK ++YI+ E DI +QE K E Q P ++M+ Y YW ++
Sbjct: 2 KFISWNVNWIRASIKKWFIEYIQDEKPDIIAMQEVKATEDQFPARLEMELMWYSIYWNAA 61
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K Y+ ++TK KP +VTY L ++++ R ++I PN+ L L+
Sbjct: 62 FKNWYSWTAIFTKEKPLEVTYWLWIWEHDNEWRIITLEFEKFYFITVYTPNSKRELNRLE 121
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R WD LF +++ +L+ KPV++ DLNV+HK IDL NP N +AGFT EER+ F
Sbjct: 122 YRQLWDSLFLDYMRRLEVNKPVVVCWDLNVAHKEIDLKNPKPNRWNAGFTDEEREGFQKF 181
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP++T AY++WS + AR RN G +YF
Sbjct: 182 LNAGFIDTFRYFYPEKTEAYSWWSNFA-FARDRNIGWRIDYF 222
>gi|116333326|ref|YP_794853.1| exonuclease III [Lactobacillus brevis ATCC 367]
gi|116098673|gb|ABJ63822.1| Exonuclease III [Lactobacillus brevis ATCC 367]
Length = 254
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK ++ ++ +AD F +QETK Q +++ P Y YW +
Sbjct: 2 KFISWNVNGLRAIVKKGFVETFQELNADFFGIQETKLQAGQ----IELDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G L+TK +P V YG+ + +H GR + + + PN+G+GLK LD
Sbjct: 58 ERKGYSGTALFTKHQPLNVIYGIDAPEFDHEGRAITLEYPDFYVLTCYTPNSGSGLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W+ F + KLDA+KPVI GDLNV+H IDL NP TN +AGFT EER ++L
Sbjct: 118 FRLGWEHAFLTFIQKLDAQKPVIFCGDLNVAHTEIDLKNPKTNHHNAGFTDEERAKMTAL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L G+TD+FR+ P T Y++WSY AR N G +YF
Sbjct: 178 LAAGYTDTFRYFNPDVTERYSWWSYRFH-ARDNNAGWRIDYF 218
>gi|339448653|ref|ZP_08652209.1| exodeoxyribonuclease III Xth [Lactobacillus fructivorans KCTC 3543]
Length = 256
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 132/221 (59%), Gaps = 6/221 (2%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
SWNV GLR+ VKK ++ + DAD F +QET+ HE + EV Y YW S+
Sbjct: 3 FISWNVNGLRSAVKKNFYEFFNEIDADFFNVQETRVHENDIALEVP---GNYYQYWDSAE 59
Query: 135 KAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
+ GYAGV +TK K V YG+ GT + GR + + I VPN+G L+ LD
Sbjct: 60 RPGYAGVTTFTKHKAQNVIYGVDGTDTDVEGRCLTLEYPDFYLINTYVPNSGEELQRLDY 119
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
RL+WD+ F + KL KPVI+ GD++V+++PID+ +P + AG+T +ERD F LL
Sbjct: 120 RLDWDQKFITFVNKLTGTKPVIIGGDMSVAYQPIDIDDPEEDHHKAGYTQQERDDFGRLL 179
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GF D+FR L+P ++GAYT+WSY R+R+ G +YF
Sbjct: 180 ASGFVDTFRALHPHQSGAYTWWSY-RYDERARDRGWRMDYF 219
>gi|241888975|ref|ZP_04776279.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
gi|241864224|gb|EER68602.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
Length = 254
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 136/223 (60%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K S+NV GLRA V K + K+ DAD FCLQETK QL ++F Y +Y+ +
Sbjct: 2 KCISFNVNGLRAIVGKNFEEDFKQLDADFFCLQETKMQAGQL----DLQFDGYYSYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ GY+G +YTK +P VTYG+G + EH GR F+I PN+G+ LK L
Sbjct: 58 ERKGYSGTAIYTKHEPLNVTYGIGIE-EHDTEGRVITLEYDKFFFITVYTPNSGSELKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+ W++ F +L+ L+ K V++ GDLNV+H IDL NP +N ++AGFT EER+ F+
Sbjct: 117 EYRMSWEEDFKNYLLALNKTKGVVVCGDLNVAHTEIDLKNPKSNMKNAGFTPEEREKFTK 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF D+FR+ P TGAY++WSY AR N G +YF
Sbjct: 177 LLDAGFIDTFRYYNPDLTGAYSWWSY-RFNARKNNAGWRIDYF 218
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G+RAC+ K LD+ + +AD FC+QETKC Q V++ Y+ YW +
Sbjct: 2 KFISWNVNGIRACLGKGFLDFFHQIEADFFCIQETKCQAGQ----VELALDGYEQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK P V YG+G ++ + GR + + + PNA L L
Sbjct: 58 QKKGYSGTAIFTKHTPLSVKYGVGDEDSQDEGRIITLEYEDFYLVNVYTPNAQRDLARLP 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W++ +L L+++KPV+ GDLNV+H IDL N +N ++GFT EER FS L
Sbjct: 118 LRLTWEEHLASYLQDLNSKKPVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF DSFR+ +P T +T+WSYM+K R RN G +YF
Sbjct: 178 LASGFVDSFRYKHPNETDHFTWWSYMNKV-RERNIGWRIDYF 218
>gi|431416509|ref|ZP_19512398.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1630]
gi|431759796|ref|ZP_19548405.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3346]
gi|430588982|gb|ELB27145.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1630]
gi|430625637|gb|ELB62257.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3346]
Length = 250
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 127/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + D D FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDGDFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|424762341|ref|ZP_18189850.1| exodeoxyribonuclease III [Enterococcus faecium TX1337RF]
gi|402425021|gb|EJV57179.1| exodeoxyribonuclease III [Enterococcus faecium TX1337RF]
Length = 253
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 127/222 (57%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA K L+ + DAD FCLQETK Q + + P Y YW
Sbjct: 4 LKFISWNVNGLRAIANKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNY 59
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++ K TYG+G ++ GR + F + PN+ + LK L
Sbjct: 60 AERKGYSGTAIFAKEPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRL 119
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL N TN ++AGFT EER + S
Sbjct: 120 DYRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSR 179
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LLD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 180 LLDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 221
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 127/222 (57%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +K D K DAD FCLQE K E Q +++ F Y YW +
Sbjct: 2 KFVSWNVNGLRAVREKGFEDIFKNFDADAFCLQEIKLQENQ----IELHFDGYYEYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YTK KP V YGLG + ++ GR N + PNA L L
Sbjct: 58 NKKGYSGTAIYTKHKPIDVHYGLGIEEHDMEGRLITLEYENYYIATVYTPNAQPELARLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +W+ F E+ KLD +KPVI+ GD+NV+H+ IDL NP N ++ GF+ EER+ F+
Sbjct: 118 YRQKWEDDFREYFKKLDEKKPVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREKFTMF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ YP +T Y++WSY AR N G +YF
Sbjct: 178 LNSGFIDTFRYFYPDKTDEYSWWSYRF-NARKNNAGWRIDYF 218
>gi|363893404|ref|ZP_09320502.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
gi|361963708|gb|EHL16774.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
Length = 251
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 128/222 (57%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA +K D K DAD FCLQE K E Q +++ F Y YW +
Sbjct: 2 KFVSWNVNGLRAVREKGFEDIFKNFDADAFCLQEIKLQENQ----IELHFDGYYEYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G +YTK KP V YGLG + ++ GR N + PNA L L
Sbjct: 58 NKKGYSGTAIYTKHKPIDVHYGLGIEEHDMEGRLITLEYENYYIATVYTPNAQPELARLA 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +W+ F E+ KLD +KPVI+ GD+NV+H+ IDL NP N ++ GF+ EER+ F+
Sbjct: 118 YRQKWEDDFREYFKKLDEKKPVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREKFTIF 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR++YP +T Y++WSY AR N G +YF
Sbjct: 178 LNAGFIDTFRYIYPDKTDEYSWWSYRF-NARKNNAGWRIDYF 218
>gi|384136257|ref|YP_005518971.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290342|gb|AEJ44452.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 260
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 125/223 (56%), Gaps = 6/223 (2%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
K SWNV GLRACV K L Y + DAD+FC+QETK Q+ + Y+ +W
Sbjct: 1 MKFVSWNVNGLRACVNKGAFLPYFESVDADVFCVQETKLQAGQIQLPIG---EAYQQFWN 57
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++T++ P V YG G + GR + + + PNA L L
Sbjct: 58 YAERKGYSGTAVFTRMPPLDVRYGFGNGVDPEGRIITLEFPSFYVVTVYTPNAKRDLSRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
RLEW+ F +L LD EKPVI GDLNV+H+ ID+ N +N ++GFT EER +
Sbjct: 118 PYRLEWEDAFRAYLCALDREKPVIACGDLNVAHQEIDIKNAKSNRGNSGFTDEERAKMTE 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF D+FR LYP T YT+WS M + R RN G +YF
Sbjct: 178 LLDAGFVDTFRALYPDVTDKYTWWSNMPRV-RERNIGWRIDYF 219
>gi|407016220|gb|EKE29973.1| Exodeoxyribonuclease III Xth [uncultured bacterium (gcode 4)]
Length = 255
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 125/222 (56%), Gaps = 3/222 (1%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV +RA ++K LDYI E DI LQE K E Q P + M+ Y YW S+
Sbjct: 2 KFISWNVNWIRAAIQKGFLDYINNEKPDIIALQEVKATEDQFPARMDMEMMWYSVYWNSA 61
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K Y+ ++TK KP V+Y L + +++ R +++ PN+ L+ L+
Sbjct: 62 SKNWYSWTAVFTKEKPLSVSYWLWMEEHDNEWRIITVEYEKFYFVTVYTPNSKRELERLE 121
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R WD LF +H+ +L+A KP+ + DLNV+HK IDL NP N +A FT EER F
Sbjct: 122 YRQLWDSLFLDHMRRLEAIKPIFVCWDLNVAHKEIDLTNPKPNRWNAWFTDEERMGFQKF 181
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR YP + G Y++WS + ARSRN G +YF
Sbjct: 182 LDAGFIDTFRFFYPDKAGEYSWWSNFA-NARSRNIGWRIDYF 222
>gi|223985143|ref|ZP_03635238.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
gi|223962889|gb|EEF67306.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
Length = 252
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 132/224 (58%), Gaps = 10/224 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRAC++K +D+ ++DADIF LQETK P +++++ P Y YW S+
Sbjct: 2 KLISWNVNGLRACIQKGFMDFFNEQDADIFALQETKLQ----PHQIELELPGYHQYWHSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLG-TKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
+ GY+G ++TK KP V Y + EH GR +++ VPN+ L
Sbjct: 58 ERKGYSGTAVFTKQKPLSVRYDFDEAEGEHPKEGRVITLEFEQFYFVTAYVPNSKEELAR 117
Query: 191 LDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFS 250
LD R++W+ HL KL+ KPV+ GDLNV+ + IDL NP TN + GF+ +ER
Sbjct: 118 LDYRMQWEDAMARHLAKLNETKPVVYTGDLNVAVEEIDLKNPKTNHFNPGFSDQERQKMR 177
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF D+FR LYP++ Y++WSY +R++N G +YF
Sbjct: 178 DLLSLGFADTFRTLYPEKV-EYSWWSY-RFNSRAKNVGWRIDYF 219
>gi|150402181|ref|YP_001329475.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
gi|150033211|gb|ABR65324.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
Length = 249
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 133/222 (59%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+K +D++++E DI C+QETK Q V++ Y YW +
Sbjct: 2 KMISWNVNGIRACLKNGFMDFLERESPDIMCIQETKVQSGQ----VQLGLDGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK+KPN V G+ T+++ GR + I PN+ GL L+
Sbjct: 58 EKKGYSGTAIFTKIKPNNVILGIKNTEHDGEGRVLTLEFDKYYLINVYTPNSQRGLTRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WD+ F ++ L+ EKPVI GDLNV+HK IDL NP N ++AGFT EER F ++
Sbjct: 118 YRQKWDQDFLNYIKTLENEKPVIFCGDLNVAHKEIDLKNPKNNVKNAGFTPEERIGFDNI 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+D GF D+FR + K Y++WSY ARS+N G +YF
Sbjct: 178 VDSGFIDTFRE-FNKEPDNYSWWSY-RFNARSKNIGWRIDYF 217
>gi|301066021|ref|YP_003788044.1| exonuclease III [Lactobacillus casei str. Zhang]
gi|417980207|ref|ZP_12620888.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
gi|300438428|gb|ADK18194.1| Exonuclease III [Lactobacillus casei str. Zhang]
gi|410525434|gb|EKQ00336.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
Length = 252
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KKE + + DAD FCLQETK Q V++ P Y Y+ +
Sbjct: 2 KLISWNVNGLRAVLKKEFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYHQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P VTYG+G +++ GR N + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHEPLNVTYGMGVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WDK F + +L A+KP++ GDLNV+H+ IDL N TN +AGFT EER F+
Sbjct: 118 YRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+LYP T Y++WSY AR+ N G +YF
Sbjct: 178 LDSGFIDTFRNLYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 217
>gi|431586490|ref|ZP_19521005.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1861]
gi|430593668|gb|ELB31654.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1861]
Length = 250
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 127/221 (57%), Gaps = 5/221 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA V K L+ + DAD FCLQETK Q + + P Y YW +
Sbjct: 2 KFISWNVNGLRAIVNKNFLEVFHELDADFFCLQETKLQAGQ----IDLDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++ K TYG+G ++ GR + F + PN+ + LK LD
Sbjct: 58 ERKGYSGTAIFAKKPALNATYGMGIDIHDTEGRLITLEYSDFFLVTCYTPNSQSELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLEW++ F+ +L L +KPVI+ GDLNV+H+ IDL TN ++AGFT EER + S L
Sbjct: 118 YRLEWEEAFYNYLENLKKQKPVIVCGDLNVAHQKIDLKKWKTNQKNAGFTPEERAALSRL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
LD GF D+FR+ YP + G Y++W+Y + ++ +YF
Sbjct: 178 LDNGFIDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYF 218
>gi|336399679|ref|ZP_08580479.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
gi|336069415|gb|EGN58049.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
Length = 267
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 136/240 (56%), Gaps = 25/240 (10%)
Query: 73 FKIASWNVAGLRACVKKEGLD-----------YIKKEDADIFCLQETKCHETQLPPEVKM 121
K SWNV GLRACVK + D Y K DAD FCLQETK + QL +
Sbjct: 1 MKFISWNVNGLRACVKPKTDDEGNVKSKGFEAYFKDLDADFFCLQETKMQKGQL----DL 56
Query: 122 KFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNE-HYGRNCNSNIVNTFYIRKN 180
+F Y++YW + + GY+G +YT+ P V YG+G + H GR + + +
Sbjct: 57 QFDGYQSYWNYAERKGYSGTAIYTRHTPLSVVYGMGIEEHGHEGRVITMEMPEFYLVCVY 116
Query: 181 VPNA------GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTT 234
PN+ G + L R++W+ F +L LD +KPVI+ GD+NV+H+ ID+ NP T
Sbjct: 117 TPNSQEAETTGGKPRRLPYRMQWEDDFRAYLQALDQKKPVIVCGDMNVAHEEIDIKNPKT 176
Query: 235 NTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
N +AGFT EERD ++LLD GFTDSFR L+P Y++WSY + +R NTG +YF
Sbjct: 177 NHLNAGFTDEERDKMTTLLDSGFTDSFRALHPDEV-TYSWWSYRFR-SREHNTGWRIDYF 234
>gi|418010415|ref|ZP_12650192.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
gi|410553904|gb|EKQ27892.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
Length = 252
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q VK+ P Y Y+ +
Sbjct: 2 KLISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VKLDLPGYHQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P VTYG+G +++ GR N + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHEPLNVTYGMGVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WDK F + +L A+KP++ GDLNV+H+ IDL N TN +AGFT EER F+
Sbjct: 118 YRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+LYP T Y++WSY AR+ N G +YF
Sbjct: 178 LDSGFIDTFRNLYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 217
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 159/286 (55%), Gaps = 26/286 (9%)
Query: 25 VEDSDANTKKTKSGSVENKATG----PMNEKLSLNKIDYSCN---KKNKLGEEPN--FKI 75
VE S N K+ G VE KA+ P +K S K+D +++ + + N I
Sbjct: 69 VEGSPLNRKR--RGHVEKKASPKKKVPRIKKQSSMKVDEQNETEVEESVVDDSANRPLTI 126
Query: 76 ASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE--YKTYWLSS 133
+WNVAGLRA VKK+ +I + ADI LQETKC EV FP +K + +
Sbjct: 127 ITWNVAGLRALVKKDACRFITSDKADIVLLQETKC------AEVPTGFPVKGFKAFVGEN 180
Query: 134 P-KAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIV--NTFY-IRKNVPNAGAGLK 189
P K G+AGV L +K KP KV L E G + + FY I VPN+G GL
Sbjct: 181 PGKTGHAGVILLSKQKPIKVQTKLENVPEELGVEGRLIVAEYDKFYLINAYVPNSGRGLV 240
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTIEERDS 248
L KR WD F +++ +LDA K VI GDLNV+H+ IDLANP TN ++AGFT +ER
Sbjct: 241 NLAKRKIWDDFFIDYIKQLDASKAVIYAGDLNVAHEEIDLANPKTNRNKTAGFTDQERGD 300
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
F+ LL GF D +R L+P +TGAYT+WS M AR+ N G +YF
Sbjct: 301 FTRLLQAGFVDVYRSLHPDKTGAYTFWSTMH-NARATNIGWRLDYF 345
>gi|159906029|ref|YP_001549691.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
gi|159887522|gb|ABX02459.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
Length = 249
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%), Gaps = 10/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+K ++++++E DI C+QETK Q V++ Y YW +
Sbjct: 2 KMISWNVNGIRACLKNGFMNFLERESPDIMCIQETKVQSGQ----VQLGLDGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ GY+G ++TK+KPN+V YG+G NEH GR + + PN+ GL L
Sbjct: 58 ERKGYSGTAVFTKIKPNEVIYGIGN-NEHDGEGRVITLKFDEYYLVNVYTPNSQRGLTRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R +WD+ F ++ L+ +KPVI GDLNV+HK +DL NP TN ++AGFT EER F +
Sbjct: 117 EYRQKWDQDFLNYVKTLENKKPVIFCGDLNVAHKEVDLKNPKTNVKNAGFTPEERKGFDN 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+++ GF D+FR + K Y++WSY AR+RN G +YF
Sbjct: 177 IVNSGFLDTFRE-FNKEPDNYSWWSYRF-NARARNIGWRIDYF 217
>gi|182413315|ref|YP_001818381.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
gi|177840529|gb|ACB74781.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
Length = 253
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 135/226 (59%), Gaps = 12/226 (5%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVK--MKFPEYKTYWL 131
K+ SWNV G+RA +KK LDY+ K DAD+ CLQETK H P +V+ Y +W
Sbjct: 2 KLVSWNVNGVRAVLKKGFLDYMGKVDADVICLQETKAH----PGDVQHVAWTAGYTPHWY 57
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKT 190
S+ K GY+G L+T+V P KV +G+G ++ GR + + F + PN+ GL
Sbjct: 58 SAVKKGYSGTALFTRVAPLKVNFGIGLPGHDDEGRVITAEFADFFLVNVYQPNSQRGLTR 117
Query: 191 LDKRLE-WDKLFHEHLVKLDAE-KPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
L R E WD F L KL+ + KPV+ GDLNV+H+ IDL NP TN R+AGFT EER +
Sbjct: 118 LKYRTEEWDPAFLAFLKKLEKKGKPVVFCGDLNVAHQEIDLTNPKTNRRNAGFTDEERAN 177
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FS LL GF D+FR + K G YT+WS M R+RN G +YF
Sbjct: 178 FSKLLASGFVDTFRE-FEKGPGHYTWWSQMM-NCRARNIGWRVDYF 221
>gi|257783920|ref|YP_003179137.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
gi|257472427|gb|ACV50546.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
Length = 259
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 138/231 (59%), Gaps = 9/231 (3%)
Query: 67 LGEEPNFKIASWNVAGLRACVKKE--GLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+ + +K+ SWNV GLRA +KKE + + +AD+F LQETK E Q V++ P
Sbjct: 1 MSQTQEYKLISWNVNGLRAVLKKEPSFTEIFETINADVFALQETKLQEGQ----VELDLP 56
Query: 125 EYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPN 183
Y W + + GY+G ++++ P +V +G + GR C +++ PN
Sbjct: 57 GYVQTWNYADRKGYSGTAVFSRETPLQVIRQIGCPVADDEGRVCALEFEKFWFVCVYTPN 116
Query: 184 AGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTI 243
+ L LD+RLEWD+ + + L +L +KPVI GD NV+H IDL NP++N ++AGF+
Sbjct: 117 SKDQLARLDERLEWDQHYRDFLAELSKQKPVITCGDFNVAHNEIDLKNPSSNRQNAGFSD 176
Query: 244 EERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
EER+SF+ LLD GFTD+FR+ +P TGAY++WSY AR N G +YF
Sbjct: 177 EERESFTKLLDAGFTDTFRYRHPDITGAYSWWSYRF-NARKNNAGWRIDYF 226
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 130/216 (60%), Gaps = 6/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G R+C+ K LD+ +ADIFC+QE+K Q +++ Y Y+ +
Sbjct: 2 KLISWNVNGFRSCLTKGFLDFFNTVEADIFCIQESKLSAGQ----IELSLEGYTQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P ++G+G ++ GR + I PN+ A L L+
Sbjct: 58 ERKGYSGTAVFTKKQPLTCSFGMGIPLHDKEGRMITLEYDEFYLINLYAPNSQAELARLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RL W++ F ++ L++ KPVI GDLNV+H+ IDL NP N R+AGFT EER FS L
Sbjct: 118 YRLTWEEDFRRYVQTLNSHKPVIFCGDLNVAHQEIDLKNPQANRRNAGFTDEERLKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR+LYP++ +Y++WSY AR RN G
Sbjct: 178 LESGFIDTFRYLYPEQKDSYSWWSY-RFNARVRNAG 212
>gi|199597303|ref|ZP_03210734.1| Exonuclease III [Lactobacillus rhamnosus HN001]
gi|199591819|gb|EDY99894.1| Exonuclease III [Lactobacillus rhamnosus HN001]
Length = 253
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 133/223 (59%), Gaps = 8/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+
Sbjct: 2 LKMISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYYQYFNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++TK KP VTYG+G +++ GR + + PN+G LK L
Sbjct: 58 AERKGYSGTAIFTKHKPLNVTYGMGIPEHDTEGRIITLEYTKFYLMTVYTPNSGGELKRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R +WD+ F + +L A+KP++ GDLNV+H+PIDL N TN +AGFT EER F+
Sbjct: 118 DYRQQWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTK 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP T Y++WSY AR+ N G +YF
Sbjct: 178 QLNSGFIDTFRHFYPD-TVTYSWWSYHFH-ARANNAGWRIDYF 218
>gi|385827641|ref|YP_005865413.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
gi|259649286|dbj|BAI41448.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
Length = 253
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 133/223 (59%), Gaps = 8/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+
Sbjct: 2 LKMISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYYQYFNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++TK KP VTYG+G +++ GR + + PN+G LK L
Sbjct: 58 AERKGYSGTAIFTKHKPLNVTYGMGIPEHDTEGRIITLEYTKFYLMTVYTPNSGGELKRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R +WD+ F + +L A+KP++ GDLNV+H+PIDL N TN +AGFT EER F+
Sbjct: 118 DYRQQWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTK 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP T Y++WSY AR+ N G +YF
Sbjct: 178 QLNSGFIDTFRHFYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 218
>gi|258507959|ref|YP_003170710.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
gi|257147886|emb|CAR86859.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
Length = 252
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 133/222 (59%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+ +
Sbjct: 2 KMISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYYQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK KP VTYG+G +++ GR + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHKPLNVTYGMGIPEHDTEGRIITLEYTKFYLMTVYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WD+ F + +L A+KP++ GDLNV+H+PIDL N TN +AGFT EER F+
Sbjct: 118 YRQQWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP T Y++WSY AR+ N G +YF
Sbjct: 178 LNSGFIDTFRHFYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 217
>gi|341882542|gb|EGT38477.1| CBN-EXO-3 protein [Caenorhabditis brenneri]
Length = 293
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 145/231 (62%), Gaps = 9/231 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY- 126
G + ++K WNVAGLRACVKK + E DI L ETKC E PPEV+ F +Y
Sbjct: 34 GNQKSWKFVCWNVAGLRACVKKSDFSEVLAEQPDIVFLGETKCKE--WPPEVEETFKDYS 91
Query: 127 KTYWLSSPK-AGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNA 184
KT +S+ K GYAGVGL +K P K+ G+G + + GR + +++ VPN+
Sbjct: 92 KTLVVSTEKNGGYAGVGLLSKCAPLKIHKGIGDPDFDSAGRLIIAEYSQFYFMGAYVPNS 151
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTI 243
GA L L+KR +W+KL + L +++ +KPVI GDLNV+H IDL NP +N ++AGFT
Sbjct: 152 GAKLVNLEKRGKWEKLLTDKLREMNEKKPVIYGGDLNVAHNEIDLKNPESNRNKTAGFTD 211
Query: 244 EERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ER F +L+ GFTDSFR L+P+ + Y++WSY++ +R ++ G +YF
Sbjct: 212 QERGWFGEMLEIGFTDSFRKLHPE-SKKYSFWSYLA-NSREKDVGWRLDYF 260
>gi|366086404|ref|ZP_09452889.1| exodeoxyribonuclease III [Lactobacillus zeae KCTC 3804]
Length = 252
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 132/222 (59%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q VK+ P Y Y+ +
Sbjct: 2 KLISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VKLDLPGYYQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P VTYG+G +++ GR + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHEPLNVTYGMGIPEHDKEGRIITLEYPKFYLMTVYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WDK F + +L +KP++ GDLNV+H+PIDL N TN +AGFT EER F+
Sbjct: 118 YRQQWDKDFRAYTNQLAEKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GF D+FRHLYP T Y++WSY AR+ N G +YF
Sbjct: 178 LKSGFIDTFRHLYPN-TVTYSWWSYRFH-ARANNAGWRIDYF 217
>gi|283769444|ref|ZP_06342342.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
gi|283103969|gb|EFC05354.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
Length = 251
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 5/222 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA +KK ++ ++ DAD+F LQETK Q+ E M+F Y Y S
Sbjct: 1 MKFVSWNVNGLRAVMKKGFKEFFERVDADVFALQETKMQADQITSE--MEFEGYYRYMNS 58
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ + GY+G +Y K +P V Y + GR N +++ VPN+ GL L
Sbjct: 59 AERKGYSGTMVYCKEEPISVQYDIEGDTSMEGRVITLEYPNYYFVTAYVPNSKEGLARLG 118
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+EW+ +HL +L KPVI GDLNV+H+ IDL NP +N ++ GF+ EER + L
Sbjct: 119 FRMEWEDRLRDHLNRLKEVKPVIYTGDLNVAHEEIDLKNPQSNHKNPGFSDEERQKMTEL 178
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L G+ DSFR+LYPK Y++WSY + AR RN G +YF
Sbjct: 179 LADGYIDSFRYLYPKEV-KYSWWSYRA-AARERNVGWRIDYF 218
>gi|71989536|ref|NP_001021584.1| Protein EXO-3, isoform a [Caenorhabditis elegans]
gi|3879014|emb|CAB03235.1| Protein EXO-3, isoform a [Caenorhabditis elegans]
gi|3941298|gb|AAC82328.1| exonuclease III homolog [Caenorhabditis elegans]
Length = 288
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 142/234 (60%), Gaps = 12/234 (5%)
Query: 63 KKNKLGEEPN----FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPE 118
KK K EE N +K WNVAGLRACVKK + E+ D+ L ETKC E PPE
Sbjct: 20 KKVKPAEEDNNQKSWKFVCWNVAGLRACVKKSDFKEVLAEEPDLVFLGETKCKE--WPPE 77
Query: 119 VKMKFPEY-KTYWLSSPK-AGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTF 175
++ F Y KT +S+ K GYAGVGL +K P KV G+G + GR + +
Sbjct: 78 MEETFKNYTKTLVVSTEKNGGYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFY 137
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN 235
+I VPN+GA L L+KR W+KL E + ++D +KPVI GDLNV+H IDL NP +N
Sbjct: 138 FIGAYVPNSGAKLVNLEKRGRWEKLLTEKMKEMDEKKPVIYGGDLNVAHNEIDLKNPESN 197
Query: 236 -TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++AGFT +ER FS +L+ GFTD+FR ++P Y++WSY++ +R ++ G
Sbjct: 198 RNKTAGFTDQERGWFSEMLELGFTDTFRAMHPDEK-KYSFWSYLA-NSRQKDVG 249
>gi|417986286|ref|ZP_12626858.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
gi|410526479|gb|EKQ01366.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
Length = 252
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+ +
Sbjct: 2 KLISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYHQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P VTYG+G +++ GR N + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHEPLNVTYGMGVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WDK F + +L A+KP++ GDLNV+H+ IDL N TN +AGFT EER F+
Sbjct: 118 YRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+LYP T Y++WSY AR+ N G +YF
Sbjct: 178 LDSGFIDTFRNLYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 217
>gi|418007606|ref|ZP_12647486.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
gi|410548624|gb|EKQ22818.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
Length = 252
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+ +
Sbjct: 2 KLISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYHQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P VTYG+G +++ GR N + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHEPLNVTYGMGVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WDK F + +L A+KP++ GDLNV+H+ IDL N TN +AGFT EER F+
Sbjct: 118 YRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+LYP T Y++WSY AR+ N G +YF
Sbjct: 178 LDSGFIDTFRNLYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 217
>gi|116494506|ref|YP_806240.1| exonuclease III [Lactobacillus casei ATCC 334]
gi|191637944|ref|YP_001987110.1| exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227535523|ref|ZP_03965572.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|385819687|ref|YP_005856074.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|385822845|ref|YP_005859187.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|417983078|ref|ZP_12623720.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|417989182|ref|ZP_12629696.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|417992549|ref|ZP_12632904.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|417995780|ref|ZP_12636067.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|417998717|ref|ZP_12638932.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|418004708|ref|ZP_12644721.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|418013374|ref|ZP_12653018.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
gi|116104656|gb|ABJ69798.1| Exonuclease III [Lactobacillus casei ATCC 334]
gi|190712246|emb|CAQ66252.1| Exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227186845|gb|EEI66912.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382014|gb|AEA53490.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|327385172|gb|AEA56646.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|410528859|gb|EKQ03697.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|410533128|gb|EKQ07815.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|410536484|gb|EKQ11077.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|410539278|gb|EKQ13814.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|410540321|gb|EKQ14836.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|410548944|gb|EKQ23126.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|410555900|gb|EKQ29831.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
Length = 252
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+ +
Sbjct: 2 KLISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYHQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P VTYG+G +++ GR N + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHEPLNVTYGMGVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WDK F + +L A+KP++ GDLNV+H+ IDL N TN +AGFT EER F+
Sbjct: 118 YRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+LYP T Y++WSY AR+ N G +YF
Sbjct: 178 LDSGFIDTFRNLYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 217
>gi|268608445|ref|ZP_06142172.1| exodeoxyribonuclease [Ruminococcus flavefaciens FD-1]
Length = 248
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 133/221 (60%), Gaps = 7/221 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G RAC+ K D+ + DADIFC+QETK P + Y Y+ S+
Sbjct: 2 KLISWNVNGFRACLTKGFGDFFAEADADIFCIQETKMQ----PDQADFSPEGYHKYFHSA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
K GY+G +YTK +P VT+G+ ++ GR + +++ VPNA LK +D
Sbjct: 58 IKKGYSGTAVYTKKEPLSVTFGINGEHTDEGRVITCEYEDFYFVGCYVPNAQNELKRIDY 117
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
R+E++ +L +LD +KPVI GDLNV+H IDL NP +N +AGF+ EER F+ LL
Sbjct: 118 RMEFEDAMRGYLSELDKKKPVIYCGDLNVAHNEIDLKNPKSNVGNAGFSDEERGKFTELL 177
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GF+DS+R LYP++ Y++WSY K AR +N G +YF
Sbjct: 178 AAGFSDSYRSLYPEKI-EYSWWSYRFK-AREKNIGWRIDYF 216
>gi|423078997|ref|ZP_17067672.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 21052]
gi|357548454|gb|EHJ30318.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 21052]
Length = 253
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 133/223 (59%), Gaps = 8/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+
Sbjct: 2 LKMISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYYQYFNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++TK KP VTYG+G +++ GR + + PN+G LK L
Sbjct: 58 AERKGYSGTAIFTKHKPLNVTYGMGIPEHDTEGRIITLEYPKFYLMTVYTPNSGGELKRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R +WD+ F + +L A+KP++ GDLNV+H+PIDL N TN +AGFT EER F+
Sbjct: 118 DYRQQWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTK 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP T Y++WSY AR+ N G +YF
Sbjct: 178 QLNSGFIDTFRHFYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 218
>gi|303232423|ref|ZP_07319115.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302481507|gb|EFL44575.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 259
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 140/231 (60%), Gaps = 9/231 (3%)
Query: 67 LGEEPNFKIASWNVAGLRACVKKE--GLDYIKKEDADIFCLQETKCHETQLPPEVKMKFP 124
+ ++ +++ASWNV GLRA +KK+ +D ++ + DI +QETK E Q + + P
Sbjct: 1 MSQKHTYRLASWNVNGLRAVMKKDPNFIDVVQSLNVDIIGIQETKLQEGQ----IALDLP 56
Query: 125 EYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPN 183
Y W + + GY+G +++K P + + +G + ++ GR C + +++ PN
Sbjct: 57 GYTQTWSYAERKGYSGTAVFSKEAPLQTIHTIGCSAADNEGRVCALEFNDFWFVNVYTPN 116
Query: 184 AGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTI 243
+ L LD+R+EWD+ + L LDA+KPVI GD N +H+ IDL NP TN ++AGF+
Sbjct: 117 SKNELARLDERMEWDEAYRSFLHTLDAKKPVITCGDFNCAHEEIDLKNPATNHQNAGFSD 176
Query: 244 EERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
EER SF+ LL+ GFTD+FR +P T AY++WSY ++ R RN G +YF
Sbjct: 177 EERASFTKLLNTGFTDTFRAAHPTLTDAYSWWSYRMRS-RERNAGWRIDYF 226
>gi|258539213|ref|YP_003173712.1| exodeoxyribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|385834871|ref|YP_005872645.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 8530]
gi|257150889|emb|CAR89861.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|355394362|gb|AER63792.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 8530]
Length = 252
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 133/222 (59%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+ +
Sbjct: 2 KMISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYYQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK KP VTYG+G +++ GR + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHKPLNVTYGMGIPEHDTEGRIITLEYPKFYLMTVYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WD+ F + +L A+KP++ GDLNV+H+PIDL N TN +AGFT EER F+
Sbjct: 118 YRQQWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP T Y++WSY AR+ N G +YF
Sbjct: 178 LNSGFIDTFRHFYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 217
>gi|229551812|ref|ZP_04440537.1| exodeoxyribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|421769410|ref|ZP_16206117.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP2]
gi|421772307|ref|ZP_16208963.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP3]
gi|229314756|gb|EEN80729.1| exodeoxyribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|411183875|gb|EKS51010.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP3]
gi|411184541|gb|EKS51673.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP2]
Length = 253
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 133/223 (59%), Gaps = 8/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+
Sbjct: 2 LKMISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYYQYFNY 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++TK KP VTYG+G +++ GR + + PN+G LK L
Sbjct: 58 AERKGYSGTAIFTKHKPLNVTYGMGIPEHDTEGRIITLEYPKFYLMTVYTPNSGGELKRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R +WD+ F + +L A+KP++ GDLNV+H+PIDL N TN +AGFT EER F+
Sbjct: 118 DYRQQWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTK 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP T Y++WSY AR+ N G +YF
Sbjct: 178 QLNSGFIDTFRHFYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 218
>gi|418070253|ref|ZP_12707528.1| exodeoxyribonuclease III [Lactobacillus rhamnosus R0011]
gi|357539673|gb|EHJ23690.1| exodeoxyribonuclease III [Lactobacillus rhamnosus R0011]
Length = 252
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 133/222 (59%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+ +
Sbjct: 2 KMISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYYQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK KP VTYG+G +++ GR + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHKPLNVTYGMGIPEHDTEGRIITLEYPKFYLMTVYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WD+ F + +L A+KP++ GDLNV+H+PIDL N TN +AGFT EER F+
Sbjct: 118 YRQQWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FRH YP T Y++WSY AR+ N G +YF
Sbjct: 178 LNSGFIDTFRHFYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 217
>gi|335998084|ref|ZP_08563996.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
gi|335348598|gb|EGM50099.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
Length = 254
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 131/221 (59%), Gaps = 7/221 (3%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
SWNV GLRA +KK + +K DAD FC+QETK E Q V++ P Y YW +
Sbjct: 3 FVSWNVNGLRAVLKKNFSEVFEKLDADFFCIQETKLQEGQ----VELDLPGYHQYWNYAE 58
Query: 135 KAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
+ GY+G ++TK +P V+YG+ ++ +H GR + + + PN+ LK LD
Sbjct: 59 RKGYSGTAIFTKHEPQSVSYGIKNSEFDHEGRVITLEYASFYLVCCYSPNSQPKLKRLDF 118
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
R+ ++ F +L L +KPVI+ GDLNV+H+ IDL NP TN R+AGF+ EER + LL
Sbjct: 119 RMGFEDAFLNYLNDLKEKKPVIMCGDLNVAHEEIDLKNPKTNHRNAGFSNEERSCMTRLL 178
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ G+ D+FR +P TG Y++WSY AR N G +YF
Sbjct: 179 ENGYLDTFRFFHPDETGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|323340218|ref|ZP_08080482.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417972789|ref|ZP_12613677.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092409|gb|EFZ35017.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346330854|gb|EGX99085.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 254
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 131/221 (59%), Gaps = 7/221 (3%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
SWNV GLRA +KK + +K DAD FC+QETK E Q V++ P Y YW +
Sbjct: 3 FVSWNVNGLRAVLKKNFSEVFEKLDADFFCIQETKLQEGQ----VELDLPGYHQYWNYAE 58
Query: 135 KAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
+ GY+G ++TK +P V+YG+ ++ +H GR + + + PN+ LK LD
Sbjct: 59 RKGYSGTAIFTKHEPQSVSYGIHNSEFDHEGRVITLEYASFYLVCCYSPNSQPKLKRLDF 118
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
R+ ++ F +L L +KPVI+ GDLNV+H+ IDL NP TN R+AGF+ EER + LL
Sbjct: 119 RMGFEDAFLNYLNDLKEKKPVIMCGDLNVAHEEIDLKNPKTNHRNAGFSNEERSCMTRLL 178
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ G+ D+FR +P TG Y++WSY AR N G +YF
Sbjct: 179 ENGYLDTFRFFHPDETGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|418001612|ref|ZP_12641751.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
gi|410546206|gb|EKQ20470.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
Length = 252
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KK+ + + DAD FCLQETK Q V++ P Y Y+ +
Sbjct: 2 KLISWNVNGLRAVLKKDFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYHQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P VTYG+G +++ GR N + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHEPLNVTYGMGVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WDK F + +L A+KP++ GDLNV+H+ IDL N TN +AGFT EER F+
Sbjct: 118 YRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+LYP T Y++WSY AR+ N G +YF
Sbjct: 178 LDGGFIDTFRNLYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 217
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 129/222 (58%), Gaps = 7/222 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA +KK D +K+ DAD FC+QETK E Q + P Y Y+
Sbjct: 1 MKFVSWNVNGLRAVLKKGFEDIVKEFDADFFCIQETKMQEGQ----ADVDLPGYHQYFSY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ K GY+G ++TK +P VTY ++ GR + + VPNA LK L+
Sbjct: 57 AEKKGYSGTAIFTKHEPLSVTYNFEGHDDE-GRAVLLEYDKFYLLNVYVPNAQPELKRLE 115
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R++W+ L +L +K V++ GDLNV+H+ IDL NP TN + GF+ EER + L
Sbjct: 116 YRMQWEDDLRAMLSELAKKKHVVMCGDLNVAHEEIDLKNPKTNRGNPGFSDEERAKMTEL 175
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FRHLYP++ GAY++WSY AR NTG +YF
Sbjct: 176 LGAGFTDTFRHLYPEQEGAYSWWSYRG-NARKNNTGWRIDYF 216
>gi|239631265|ref|ZP_04674296.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239525730|gb|EEQ64731.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 252
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 133/222 (59%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA +KKE + + DAD FCLQETK Q V++ P Y Y+ +
Sbjct: 2 KLISWNVNGLRAVLKKEFMTIFNELDADWFCLQETKMQAGQ----VELDLPGYHQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK +P VTYG+G +++ GR N + + PN+G LK LD
Sbjct: 58 ERKGYSGTAIFTKHEPLNVTYGMGVPEHDTEGRIITLEYPNFYLMTVYTPNSGGELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WDK F + +L A+KP++ GDLNV+H+ IDL N TN +A FT EER F+
Sbjct: 118 YRQQWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNASFTDEERADFTKQ 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GF D+FR+LYP T Y++WSY AR+ N G +YF
Sbjct: 178 LDSGFIDTFRNLYPD-TVTYSWWSYRFH-ARANNAGWRIDYF 217
>gi|134045625|ref|YP_001097111.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
gi|132663250|gb|ABO34896.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
Length = 249
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+K +D++K+E D+ C+QETK Q V++ Y YW +
Sbjct: 2 KMLSWNVNGIRACLKNGFMDFLKRESPDVMCIQETKVQSGQ----VQLGLDGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK+KPN+V YG+ +++ GR + + PN+ GL L
Sbjct: 58 ERKGYSGTAVFTKIKPNEVIYGIKNSEHNGEGRVITLKFDEYYLVNVYTPNSQRGLTRLK 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WD+ F ++ L+ +KPVI GDLNV+HK IDL NP TN ++AGFT EER F ++
Sbjct: 118 YRQKWDQDFLNYVKTLENKKPVIFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERKGFDNI 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ GF D+FR + K Y++WSY AR+RN G +YF
Sbjct: 178 VNSGFLDTFRE-FNKEPDNYSWWSYRF-NARARNIGWRIDYF 217
>gi|256827574|ref|YP_003151533.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583717|gb|ACU94851.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 262
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 132/233 (56%), Gaps = 18/233 (7%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV GLRA KK D AD+F LQETK E Q + ++FP+Y+++W +
Sbjct: 2 RLVSWNVNGLRAAEKKGFSDIFTSLKADVFALQETKLQEGQ----IDLEFPDYESHWSYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G +Y + KP +V +GLG + + GR C +++ PNA L +D
Sbjct: 58 ERKGYSGTAVYARQKPLQVLHGLGVPHLDTEGRICALEFPEFWFVDVYTPNAQNELARID 117
Query: 193 KRLEWDKLFHEHLVKLD-----------AEKPVILIGDLNVSHKPIDLANPTTNTRSAGF 241
R+EWD F + L+ KPVI+ GD NV+H+ IDL NP +N +AGF
Sbjct: 118 HRMEWDDAFRDFCKGLEKGTTPLGPDTAQPKPVIMCGDFNVAHEEIDLKNPKSNRGNAGF 177
Query: 242 TIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ EER+ F+ LLD GF D+FR L P GAY++WSY AR+ N G +YF
Sbjct: 178 SDEEREKFTKLLDAGFVDTFRLLNPTEVGAYSWWSYRF-NARANNAGWRIDYF 229
>gi|150399093|ref|YP_001322860.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
gi|150011796|gb|ABR54248.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
Length = 257
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 132/222 (59%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+K +D++ ++ +I C+QETK + Q V++ Y YW +
Sbjct: 10 KMISWNVNGIRACLKNGFMDFLNSKNPEIICIQETKVQKGQ----VQLGLNGYFEYWNYA 65
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK++P V YG+ K++ GR F + PN+ GLK L+
Sbjct: 66 EKKGYSGTAIFTKIEPKSVKYGITNYKSDKEGRVITLEFEEYFLVNVYTPNSQRGLKRLE 125
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WDK F HL L+ +KPVI GDLNV+HK IDL NP N ++AGFT EER+ F +L
Sbjct: 126 CRQKWDKDFLNHLKTLEQKKPVIFCGDLNVAHKEIDLKNPKQNIKNAGFTKEERNGFDNL 185
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ GF D+FR L YT+WSY AR +N G +YF
Sbjct: 186 INSGFLDTFREL-NNEPENYTWWSYRF-NAREKNIGWRIDYF 225
>gi|340354875|ref|ZP_08677571.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622889|gb|EGQ27400.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
Length = 238
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 123/203 (60%), Gaps = 6/203 (2%)
Query: 87 VKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTK 146
+KK D+ ++ ADIFC+QE KC E Q +++ F Y+ YW + K GY+G ++TK
Sbjct: 1 MKKGFNDFFEQMQADIFCVQEIKCQEGQ----IELPFDGYEHYWNYAEKKGYSGTAVFTK 56
Query: 147 VKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHL 205
+P V YGL G +E GR F + PN+ L L RL+W+ HL
Sbjct: 57 QRPLSVQYGLNGQDSEAEGRVLTLEFEKFFLVNCYTPNSQRDLARLSYRLKWEDEMLAHL 116
Query: 206 VKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLY 265
+LDA+KPVI GDLNV+H+ ID+ N +N ++GFT EER + LLD GF D+FR+L+
Sbjct: 117 TELDAQKPVIYCGDLNVAHEEIDICNVKSNYGNSGFTKEERAKMTRLLDSGFIDTFRYLH 176
Query: 266 PKRTGAYTYWSYMSKTARSRNTG 288
P + GAYT+WSYM + R+RN G
Sbjct: 177 PNQEGAYTWWSYM-RDVRARNIG 198
>gi|347525140|ref|YP_004831888.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345284099|gb|AEN77952.1| Exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 254
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 131/221 (59%), Gaps = 7/221 (3%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
SWNV GLRA +KK + +K DAD FC+QETK E Q V++ P Y YW +
Sbjct: 3 FVSWNVNGLRAVLKKNFSEVFEKLDADFFCIQETKLQEGQ----VELDLPGYHQYWNYAE 58
Query: 135 KAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
+ GY+G ++TK +P V+YG+ ++ +H GR + + + PN+ LK LD
Sbjct: 59 RKGYSGTAIFTKHEPQSVSYGIQNSEFDHEGRVITLEYASFYLVCCYSPNSQPKLKRLDF 118
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
R+ ++ F +L L +KPVI+ GDLNV+H+ IDL NP TN ++AGF+ EER + LL
Sbjct: 119 RMGFEDAFLNYLNALKEKKPVIMCGDLNVAHEEIDLKNPKTNHKNAGFSNEERSCMTRLL 178
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ G+ D+FR +P TG Y++WSY AR N G +YF
Sbjct: 179 ENGYLDTFRFFHPDETGIYSWWSY-RFNARKNNAGWRIDYF 218
>gi|228909564|ref|ZP_04073387.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
gi|228849853|gb|EEM94684.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
Length = 244
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 132/208 (63%), Gaps = 7/208 (3%)
Query: 88 KKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKV 147
K + L+Y+++ ADIFCLQE K E Q + + Y TYW + K GY+G +++K
Sbjct: 9 KVDFLEYLEESSADIFCLQEIKLQEGQ----IDLNLEGYYTYWNYAVKKGYSGTAIFSKK 64
Query: 148 KPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLV 206
+P VTYGLG + ++ GR + + I PN+ GL+ LD R++W+ F ++
Sbjct: 65 EPLSVTYGLGIEEHDQEGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIK 124
Query: 207 KLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYP 266
+LD +K VI GDLNV+HK IDL NP +N ++ GF+ EER+ F+ +L++GF D++R+LYP
Sbjct: 125 RLDEKKTVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFVDTYRYLYP 184
Query: 267 KRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ GAY++WSY AR++N G +YF
Sbjct: 185 NQEGAYSWWSY-RMGARAKNIGWRLDYF 211
>gi|281206753|gb|EFA80938.1| hypothetical protein PPL_06173 [Polysphondylium pallidum PN500]
Length = 2081
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 134/235 (57%), Gaps = 20/235 (8%)
Query: 70 EPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY--- 126
E KI SWNVAG +C KK Y+++E DI CLQETK +++P + K EY
Sbjct: 1247 ENQLKIMSWNVAGFNSCTKKGFKAYVEQEQPDILCLQETKILPSKVPKDAIPKGYEYHFS 1306
Query: 127 ---KT----YWLSSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIR 178
KT YW+ + L TKVKP VT G+G K++ GR + + +
Sbjct: 1307 ACRKTWIPWYWV---RILLLFDFLLTKVKPISVTMGMGVGKHDKEGRIITAEYEKFYLVN 1363
Query: 179 KNVPNAGAGLKTLDKRL-----EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPT 233
VPN+G KT RL EWD +++ +L+ +KPVI GDLNV+HK IDL NP
Sbjct: 1364 TYVPNSGVDRKTPLARLDYRTKEWDVDLFKYMHELNKKKPVIWTGDLNVAHKEIDLKNPK 1423
Query: 234 TNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
N R+AGFT+EER SFS L+ GF D+FRH PK+ YT+WSYM + +R+ N G
Sbjct: 1424 GNVRTAGFTVEERTSFSGFLESGFVDTFRHFNPKKEFQYTFWSYM-RNSRASNAG 1477
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 124/223 (55%), Gaps = 6/223 (2%)
Query: 73 FKIASWNVAGLRACVKKEG-LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
+ SWNV GLRACV K L Y + DAD+FC+QETK Q+ + Y+ +W
Sbjct: 1 MRFVSWNVNGLRACVNKGAFLPYFESADADVFCIQETKLQAGQIELPIG---EAYQQFWN 57
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++T++ P V YG G N+ GR + + + PNA L L
Sbjct: 58 YAERKGYSGTAVFTRITPLDVRYGFGDGNDPEGRIITLEFPSFYVVTVYTPNAKRDLSRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
RLEW+ F +L LD EKPVI GDLNV+H+ ID+ N +N ++GFT EER +
Sbjct: 118 PYRLEWEDAFCAYLCALDREKPVIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERAKMTE 177
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF D+FR L+P T YT+WS M R RN G +YF
Sbjct: 178 LLAAGFVDTFRALHPNVTDKYTWWSNMPGV-RERNIGWRIDYF 219
>gi|196233332|ref|ZP_03132177.1| exodeoxyribonuclease III Xth [Chthoniobacter flavus Ellin428]
gi|196222637|gb|EDY17162.1| exodeoxyribonuclease III Xth [Chthoniobacter flavus Ellin428]
Length = 216
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 5/216 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA +KK D+I+ E+ DI LQETK + V EY ++W +
Sbjct: 2 KLISWNVNGIRAVLKKGFTDFIESENPDILALQETKATPEDVV--VPQALAEYTSFWNIA 59
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TK KP VT G+G +++ GR + + F + VPN+ L L
Sbjct: 60 EKKGYSGTAIFTKTKPIAVTLGIGVAEHDREGRVITAEYADFFLVNVYVPNSKRELTRLA 119
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WD+ F +L KL+ +KPVI GDLNV+H IDLA P N ++ GFT EER F +
Sbjct: 120 YRQQWDRDFLAYLKKLELKKPVIWCGDLNVAHTEIDLARPKDNVKNHGFTPEERAGFDAF 179
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+ GF D+FR + K G YT+WS M TAR+RN G
Sbjct: 180 VGAGFVDAFRE-FEKAGGHYTWWSQMG-TARARNIG 213
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 126/208 (60%), Gaps = 6/208 (2%)
Query: 82 GLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGV 141
GLRAC+ K +D+ DAD+FC+QE+K + Q E F Y +W + K GY+GV
Sbjct: 3 GLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCAIKKGYSGV 58
Query: 142 GLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKL 200
+TK +P V+YG+ + ++ GR + + + PN+ L L R+ W+
Sbjct: 59 VTFTKKEPLSVSYGINIEEHDKEGRVITCEFESFYLVNVYTPNSQQALFRLSYRMSWEVE 118
Query: 201 FHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDS 260
F + L L+ +KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS LL+ GF D+
Sbjct: 119 FKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDT 178
Query: 261 FRHLYPKRTGAYTYWSYMSKTARSRNTG 288
FR+ YP + AYT+WSYM + AR ++ G
Sbjct: 179 FRYFYPNKEKAYTWWSYMQQ-ARDKDIG 205
>gi|118375590|ref|XP_001020979.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila]
gi|89302746|gb|EAS00734.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila
SB210]
Length = 396
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 140/233 (60%), Gaps = 10/233 (4%)
Query: 69 EEPNFKIASWNVAGLRACVKKEGLD-YIKKEDADIFCLQETKCHETQLPPE-VKMKFPE- 125
+ N KIA WNV GLRA +K+E L YIK+E+ DI CL ETK E+ E V P
Sbjct: 113 DRQNIKIACWNVNGLRAVLKREDLQKYIKQENPDILCLNETKIDESNFIKEKVYKDIPSG 172
Query: 126 YKTYW--LSSPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVP 182
Y YW P GY+GV +++K K + G+ ++E+ GR + + + VP
Sbjct: 173 YYQYWNFCIPPIKGYSGVSIFSKEKVISIKKGIDIAEHENEGRVLTAEFDKFYLVVVYVP 232
Query: 183 NAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGF 241
NAG+ L LD R+ +DK F +L +L +K VIL GDLNV+H+ ID+ANP +N S GF
Sbjct: 233 NAGSELVRLDYRVNSFDKDFQNYLNQLKLKKNVILCGDLNVAHQEIDIANPKSNRNSPGF 292
Query: 242 TIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
TIEER+SFS L+ G+ D+FR LYP+ T Y++WS +K AR N G +YF
Sbjct: 293 TIEERNSFSKFLESGWIDTFRFLYPE-TIKYSWWSVRTK-ARESNIGWRIDYF 343
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 123/223 (55%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRAC+KK + + DAD FC+QETK P + Y Y S
Sbjct: 1 MKFVSWNVNGLRACLKKGFEETFRTLDADFFCIQETKMQ----PGQADFAPEGYTEYIYS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++ + V YGL + H GR + + + VPN+ L +
Sbjct: 57 ADKKGYSGTAIWARTPALSVRYGLEEDLHNHEGRAITLEYPDFYLVNLYVPNSQNELARI 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R++W+ +L LDA+KPVIL GDLNV+H IDL NP N +AGF+ +ER
Sbjct: 117 DYRMQWEDDLRRYLQALDAQKPVILCGDLNVAHTEIDLKNPGPNRGAAGFSDQERGKLDE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD+FRHL+P TG Y++WS M AR RN G +YF
Sbjct: 177 LLAAGFTDTFRHLHPDATGIYSWWS-MRFRARERNAGWRIDYF 218
>gi|342218104|ref|ZP_08710730.1| exodeoxyribonuclease III [Megasphaera sp. UPII 135-E]
gi|341590909|gb|EGS34130.1| exodeoxyribonuclease III [Megasphaera sp. UPII 135-E]
Length = 249
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 129/223 (57%), Gaps = 7/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV GLRA +KK +D + DAD FCLQETK Q + + P Y YW
Sbjct: 1 MKYISWNVNGLRAIMKKGFIDIFQTLDADFFCLQETKLQAGQ----IDLTLPGYHQYWNY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++TK +P +VTYG+G ++H GR + + + PN+ L L
Sbjct: 57 ADRKGYSGTAIFTKHEPLQVTYGMGIDAHDHEGRLITLEYPDRYVVTCYTPNSQNELARL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R++W+ +L +L +K VI GDLNV+H+ IDL NP N ++AGF+ EER+ ++
Sbjct: 117 PYRMQWEDDCRHYLSQLKEQKSVIFCGDLNVAHEEIDLKNPKNNRKNAGFSDEEREKMTN 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTD++R+ YP Y++WSY AR N G +YF
Sbjct: 177 LLNSGFTDTWRYFYPDTANVYSWWSY-RFNARKNNAGWRIDYF 218
>gi|45358575|ref|NP_988132.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis S2]
gi|44921333|emb|CAF30568.1| exonuclease III [Methanococcus maripaludis S2]
Length = 249
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 134/222 (60%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RAC+K ++++++E DI C+QETK Q V++ Y YW +
Sbjct: 2 KMLSWNVNGIRACLKNGFMNFLERESPDIMCIQETKVQSGQ----VQLGLDGYFQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGL-GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G ++TK+KPN V G+ +++ + GR + + PN+ GL L+
Sbjct: 58 ERKGYSGTAIFTKIKPNNVILGMENSEHNNEGRVITLEFDEYYLVNVYTPNSQRGLTRLE 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R +WD+ F ++ L+ +KPV+ GDLNV+HK IDL NP TN ++AGFT EER+ F ++
Sbjct: 118 YRQKWDEDFLSYIKTLETKKPVVFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERNGFDNI 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ GF D+FR + Y++WSY AR+RN G +YF
Sbjct: 178 VNSGFLDTFRE-FNNEPDNYSWWSY-RFNARARNIGWRIDYF 217
>gi|385826522|ref|YP_005862864.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
gi|329667966|gb|AEB93914.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
Length = 260
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 126/222 (56%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA ++ ++ DADIF +Q+T+ P EVK+ P Y YW +
Sbjct: 8 KFMSWNVNGLRAALRHGFVNTFTDLDADIFGIQDTRVE----PNEVKIDLPGYYQYWNYA 63
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GYAG ++TK KP V G G + + GR+ N ++I VP +G L+ LD
Sbjct: 64 ERKGYAGTAVFTKEKPITVANGFGVPEVDGEGRSITLEFSNFYFINVQVPFSGEKLQRLD 123
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W ++F ++ KL KPVI+ GD++V+H+ IDLA P N GFT ER FS L
Sbjct: 124 FRELWAQIFRNYVTKLMQYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKEFSEL 183
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ +P YTYWSY K AR+ N G +YF
Sbjct: 184 LNAGFIDTFRYFHPDE-AKYTYWSYRDKEARAENLGWRLDYF 224
>gi|323141860|ref|ZP_08076721.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
gi|322413607|gb|EFY04465.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
Length = 236
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 125/204 (61%), Gaps = 10/204 (4%)
Query: 93 DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKV 152
+++++ DI CLQETK Q FP Y+ YW S+ + GY+G ++TKVKP V
Sbjct: 7 EFLQEAAPDIICLQETKMQREQ----ADFVFPGYEEYWNSAERKGYSGTAVFTKVKPLAV 62
Query: 153 TYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDA 210
TYGLG + EH GR + + + PN+ GL LD R+ W+ +F +L +LDA
Sbjct: 63 TYGLG-QEEHDKEGRVITLEFASFYLVTVYTPNSKDGLARLDYRMVWEDVFRAYLQELDA 121
Query: 211 EKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTG 270
+KPV++ GDLNV+ + IDL NP TN R+AGFT EER F L GFTDSFR+L+P+
Sbjct: 122 KKPVVVCGDLNVAAEEIDLKNPKTNRRNAGFTDEERAKFRELKAAGFTDSFRYLHPEEV- 180
Query: 271 AYTYWSYMSKTARSRNTGC-TNYF 293
Y++WSY K AR +N G +YF
Sbjct: 181 KYSWWSYRFK-AREKNAGWRIDYF 203
>gi|350565008|ref|ZP_08933806.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
gi|348664197|gb|EGY80712.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
Length = 250
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 133/223 (59%), Gaps = 9/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA VKK L+ + + + DI LQE K E QL E++ Y +
Sbjct: 2 KFISWNVNGLRAAVKKGFLEKLAEMNPDIIGLQEIKLSEGQLELELEGYELYYNY----A 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKNEH--YGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ GY+G ++TK+KP VTYG+G + EH GR + ++I PN+ L+ L
Sbjct: 58 ERKGYSGTAVFTKLKPISVTYGIGIE-EHDTEGRVITLEFEDYYFITCYTPNSKRKLERL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L +LD KP++L GDLNV+H IDLANP TN +SAGF+ EER F+
Sbjct: 117 DYRVVWEDAFRNYLNELDKNKPIVLCGDLNVAHNEIDLANPDTNHKSAGFSDEERAKFTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL G+ D+FRH YP R Y++WS +K AR RN G +YF
Sbjct: 177 LLASGYVDTFRHFYPDRADEYSWWSNFNK-ARERNIGWRIDYF 218
>gi|297569473|ref|YP_003690817.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
gi|296925388|gb|ADH86198.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
Length = 490
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 129/225 (57%), Gaps = 6/225 (2%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
+ ++ASWNV GLRA KK + + DAD+ +QE K H QLP E + P Y+ +WL
Sbjct: 237 SLRLASWNVNGLRAIAKKGFAELAGELDADLLAIQEIKAHPDQLPAEAR-ALPGYQAFWL 295
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGT--KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
+ + GY+GV +Y++++P KV YG+G K E GR + F + +PNA L
Sbjct: 296 PAKRKGYSGVAIYSRLEPLKVLYGMGQEEKYEQEGRVLTMEFADFFLVNAYLPNAQPELA 355
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
L +L++ + F + L +K V++ GDLNV+H+ IDLA P N +S GF+ ER
Sbjct: 356 RLPFKLDFCRHFQQFCENLATQKNVVVCGDLNVAHREIDLARPQENQQSPGFSPAERAWL 415
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L GFTD+FR L+ + G YT+WSY AR RN G +YF
Sbjct: 416 DGFLANGFTDTFR-LFNQEGGNYTWWSYRGG-ARQRNVGWRIDYF 458
>gi|441499473|ref|ZP_20981659.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
gi|441437006|gb|ELR70364.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
Length = 258
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 7/226 (3%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYW- 130
N + SWNV GLRA +KK + +K D DI CLQETK + +++ P+YK Y
Sbjct: 3 NLSLVSWNVNGLRAIIKKGFITSLKSLDPDILCLQETKGQVEDIKTALQL-LPDYKAYVN 61
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
S K GY+G + +K +P +TY LG +++ GR + + F + PN+G GL
Sbjct: 62 CSKLKKGYSGTAILSKKEPLDITYDLGHEEHDQEGRVITAEFDHFFLVNVYTPNSGQGLN 121
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTIEERDS 248
L+ R WD +F HL L+ KPV+L GDLNV+H+ ID+A N +SAG+T +E D
Sbjct: 122 RLEYRQAWDVIFLNHLRSLEQRKPVVLCGDLNVAHEEIDIARAKQNYNKSAGYTQQEIDG 181
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
F S L+ GF D+FRH +P+ YTYW+ M + R+RN G +YF
Sbjct: 182 FKSYLEHGFVDTFRHFFPEEV-KYTYWNQMFNS-RARNVGWRIDYF 225
>gi|313891277|ref|ZP_07824895.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|416852294|ref|ZP_11909439.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
gi|313120344|gb|EFR43465.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|356739783|gb|EHI65015.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
Length = 275
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 131/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + EDADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDRLVSEDADIIAIQETKLSATG-PTKKHLET 59
Query: 123 ----FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNI 171
FP Y W SS + GYAG K N V G T + GR
Sbjct: 60 ILSYFPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPVVTFPEIGAPTTMDSEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F + PNAG GL+ L R EWD + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 EDFFVTQVYTPNAGDGLRRLADRQEWDIKYADYLTQLDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RSAGFT EER F++LL+KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSAGFTDEERAGFTALLEKGFTDTFRHLHGDLPNVYTWWAQRSKTSKMNNTG 236
>gi|402836561|ref|ZP_10885097.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
gi|402271037|gb|EJU20293.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
Length = 249
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 126/223 (56%), Gaps = 10/223 (4%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQ--LPPEVKMKFPEYKTYWL 131
K SWNV G RA +KK D K DAD FCLQETK E Q PE Y Y+
Sbjct: 2 KFISWNVNGFRAVLKKGFEDVFKDLDADFFCLQETKMQEGQADFHPE------GYHEYYS 55
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++ K P +V YG+ K+ GR + + I VPN+ LK +
Sbjct: 56 YADKKGYSGTAIFAKEAPLRVAYGIEGKHNDEGRVITLEYDDFYLICAYVPNSQDELKRI 115
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+E++ ++ KLD KPV+ GDLNV+H+ IDL NP +N +AGF+ EER +
Sbjct: 116 DYRMEYEDDLRAYMSKLDKVKPVVYCGDLNVAHEEIDLKNPKSNRGNAGFSDEERSKMTE 175
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTD++RHL+P G Y++WSY AR+ N G +YF
Sbjct: 176 LLGAGFTDTYRHLHPDTPGVYSWWSYRF-NARANNAGWRIDYF 217
>gi|390952993|ref|YP_006416751.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
gi|390418979|gb|AFL79736.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
Length = 254
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 134/224 (59%), Gaps = 6/224 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
KI SWNV G+RA KK+ D I K D D+ CLQETK ++ E + +Y Y+ S
Sbjct: 1 MKIISWNVNGVRAITKKDFFDDISKMDPDVLCLQETKAQNEEVE-EALSEMTDYHQYYNS 59
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+GV + +K +P VTY +G +++ GR + + + VPN+G L+ L
Sbjct: 60 AERKGYSGVAILSKKEPISVTYDMGIAEHDTEGRVICAEYDTFYLVNVYVPNSGQKLERL 119
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTIEERDSFS 250
D R WD FH +L ++ K VIL GDLNV+H+ IDL N N ++AG+T E D
Sbjct: 120 DYRKGWDTDFHNYLKNIEKTKSVILCGDLNVAHQAIDLKNDKANYNKTAGYTQIEIDGMD 179
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L++GF D+FRH +P+ T AYTYWSY K +R RNTG +YF
Sbjct: 180 NFLNEGFVDTFRHFHPE-TVAYTYWSYRFK-SRERNTGWRIDYF 221
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 130/227 (57%), Gaps = 11/227 (4%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
+ SWNV GLRA +KK D++ + D+ CLQETK +P YW +
Sbjct: 6 LLSWNVNGLRAVLKKGFDDFLASQQPDVLCLQETKISADLTADFAFAGYP--YVYWNCAE 63
Query: 135 KAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNA-----GAGL 188
K GY+G + ++++P V YGLG K++ GR + + + + PN+
Sbjct: 64 KKGYSGTAIISQIEPISVRYGLGIEKHDQEGRVITAEFEDYYLVTVYTPNSQNHDENKRP 123
Query: 189 KTLDKR-LEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERD 247
+ LD R LEWD F ++ L+ KPV+ GDLNV+H IDLANP TN ++AGFT EER
Sbjct: 124 RRLDYRTLEWDVDFLAYVKGLEVTKPVVFCGDLNVAHTEIDLANPKTNRKNAGFTDEERG 183
Query: 248 SFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
F ++++ GF D+FRHLYP RT Y++WSY + AR RN G +YF
Sbjct: 184 RFDAIIEAGFIDTFRHLYPDRTEQYSWWSYRA-AARQRNIGWRIDYF 229
>gi|432328166|ref|YP_007246310.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
gi|432134875|gb|AGB04144.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
Length = 257
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 133/221 (60%), Gaps = 5/221 (2%)
Query: 75 IASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSP 134
+ SWNV G+RA V+ L +++K + DI LQE K E +P EV+ + Y+ ++ +
Sbjct: 7 LMSWNVNGIRAAVRNGFLKFLEKYNPDILALQEIKAREDDIPLEVRY-YEGYRKFFNPAR 65
Query: 135 KAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDK 193
+ GYAG L+TK++P V++G+G + + GR + + + PN+ GL LD
Sbjct: 66 RKGYAGTALFTKIEPESVSFGIGDERFDSEGRVITAEYERFYLVNAYFPNSQHGLTRLDF 125
Query: 194 RLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLL 253
++E+D+ H +L +L KPV+L GD NV+HK IDLANP N ++AGFT EER L
Sbjct: 126 KIEFDRKIHAYLNELRRSKPVVLCGDFNVAHKEIDLANPKQNEKNAGFTPEERAWMDEFL 185
Query: 254 DKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ G+ D+FR ++ K G YT+W+Y AR+RN G +YF
Sbjct: 186 NDGYVDTFR-MFTKEGGHYTWWTY-RFNARARNIGWRVDYF 224
>gi|42519716|ref|NP_965646.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
gi|41584005|gb|AAS09612.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
Length = 261
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 125/222 (56%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA ++ ++ DADIF +Q+T+ P EVK+ P Y YW +
Sbjct: 9 KFMSWNVNGLRAALRHGFVNTFTDLDADIFGIQDTRVE----PNEVKIDLPGYYQYWNYA 64
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GYAG ++TK KP V G G + + GR+ N ++I VP +G L+ LD
Sbjct: 65 ERKGYAGTAVFTKEKPITVANGFGVPEVDGEGRSITLEFSNFYFINVQVPFSGEKLQRLD 124
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W + F ++ KL KPVI+ GD++V+H+ IDLA P N GFT ER FS L
Sbjct: 125 FRELWAQTFRNYVTKLMQYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKEFSEL 184
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ +P YTYWSY K AR+ N G +YF
Sbjct: 185 LNAGFIDTFRYFHPDE-AKYTYWSYRDKEARAENLGWRLDYF 225
>gi|373851837|ref|ZP_09594637.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391230369|ref|ZP_10266575.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
gi|372474066|gb|EHP34076.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391220030|gb|EIP98450.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
Length = 251
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 138/225 (61%), Gaps = 10/225 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVK-MKFPE-YKTYW 130
K+ SWNV G+RA ++K LDYI AD+ CLQETKC P +V+ + +P Y+ +W
Sbjct: 1 MKLVSWNVNGVRAVLQKGLLDYIAASGADVICLQETKCQ----PGDVQHVVWPAGYRAWW 56
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
++ K GY+G ++++V+P V+ GLG + ++ GR + + + + VPNA L
Sbjct: 57 NAAQKKGYSGTAIFSRVEPVAVSCGLGLPDHDNEGRVLTAEFADFYLVNVYVPNAQHELV 116
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
L R W+ F +L L+ +KPV++ GD+NV+H+ IDLA P N +AGF+ EER+ F
Sbjct: 117 RLPYRRRWNADFLSYLRSLEKKKPVVVCGDMNVAHQEIDLARPKENVGNAGFSNEEREDF 176
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
S++L GF D+FR + K G Y++W+Y + AR RN G +YF
Sbjct: 177 STMLRAGFVDTFRE-FEKGPGHYSWWTYRA-GARGRNIGWRIDYF 219
>gi|417838206|ref|ZP_12484444.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761749|gb|EGP13018.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 254
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 125/222 (56%), Gaps = 7/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA ++ ++ DADIF +Q+T+ P EVK+ P Y YW +
Sbjct: 2 KFMSWNVNGLRAALRHGFVNTFTDLDADIFGIQDTRVE----PNEVKIDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GYAG ++TK KP V G G + + GR+ N ++I VP +G L+ LD
Sbjct: 58 ERKGYAGTAVFTKEKPITVANGFGVPEVDGEGRSITLEFSNFYFINVQVPFSGEKLQRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W + F ++ KL KPVI+ GD++V+H+ IDLA P N GFT ER FS L
Sbjct: 118 FRELWAQTFRNYVTKLMQYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKEFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ +P YTYWSY K AR+ N G +YF
Sbjct: 178 LNAGFIDTFRYFHPDE-AKYTYWSYRDKEARAENLGWRLDYF 218
>gi|402828442|ref|ZP_10877330.1| exodeoxyribonuclease III [Slackia sp. CM382]
gi|402286525|gb|EJU34996.1| exodeoxyribonuclease III [Slackia sp. CM382]
Length = 264
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV GLRA VKK + DAD+F LQETK E Q +++ P Y W +
Sbjct: 2 RLISWNVNGLRAVVKKGFDEAFAALDADVFALQETKLQEGQ----IELDLPGYVQNWSYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++++ +P +V + +GT + GR C +++ PNA L L+
Sbjct: 58 EKKGYSGTAVFSREEPLQVVHHVGTPALDTEGRICACEFEKFWFVDVYTPNAQPELARLE 117
Query: 193 KRLEWDKLFHEHLVKLDA-------------EKPVILIGDLNVSHKPIDLANPTTNTRSA 239
R+ WD F E L+A KPVI+ GD NV+H+ IDL NP +N S
Sbjct: 118 HRMAWDAAFREFCKNLEAGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDLKNPRSNRGSP 177
Query: 240 GFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GF+ EER SF+SLLD GF D+FR L+P GAY++WSY AR N G +YF
Sbjct: 178 GFSDEERSSFTSLLDAGFADTFRMLHPDLEGAYSWWSY-RFNARKNNAGWRIDYF 231
>gi|311110171|ref|ZP_07711568.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|311065325|gb|EFQ45665.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 265
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 127/222 (57%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA ++ ++ DADIF +Q+T+ P EV++ P Y YW +
Sbjct: 13 KFMSWNVNGLRAALRHGFVNTFTDLDADIFAIQDTRVE----PNEVQIDLPGYYQYWNYA 68
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GYAG ++TK KP V G G + + GR+ N ++I VP +G L+ LD
Sbjct: 69 KRKGYAGTAVFTKEKPITVANGFGVPEVDGEGRSITLEFSNFYFIDVQVPFSGEKLQRLD 128
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W + F ++ KL KPVI+ GD++V+H IDLA P N R AGFT ER FS L
Sbjct: 129 FRELWAQTFRNYVTKLMQYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKEFSEL 188
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ +P YTYWSY + AR++N G +YF
Sbjct: 189 LNAGFIDTFRYFHPDE-AKYTYWSY-REDARAKNIGWRLDYF 228
>gi|116630243|ref|YP_815415.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|420148175|ref|ZP_14655447.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
gi|116095825|gb|ABJ60977.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|398400333|gb|EJN53898.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
Length = 268
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 127/222 (57%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA ++ ++ DADIF +Q+T+ P EV++ P Y YW +
Sbjct: 16 KFMSWNVNGLRAALRHGFVNTFTDLDADIFAIQDTRVE----PNEVQIDLPGYYQYWNYA 71
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GYAG ++TK KP V G G + + GR+ N ++I VP +G L+ LD
Sbjct: 72 KRKGYAGTAVFTKEKPITVANGFGVPEVDGEGRSITLEFSNFYFIDVQVPFSGEKLQRLD 131
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W + F ++ KL KPVI+ GD++V+H IDLA P N R AGFT ER FS L
Sbjct: 132 FRELWAQTFRNYVTKLMQYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKEFSEL 191
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ +P YTYWSY + AR++N G +YF
Sbjct: 192 LNAGFIDTFRYFHPDE-AKYTYWSY-REDARAKNIGWRLDYF 231
>gi|15227354|ref|NP_181677.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 9/212 (4%)
Query: 74 KIASWNVAGLRACVKKE---GLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KTY 129
K+ +WNV GLR +K E L ++E+ DI CLQETK + K Y ++
Sbjct: 277 KVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLIDGYDHSF 336
Query: 130 W-LSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAG 187
W S K GY+G + +++KP V YG G + ++ GR + + + I VPN+G G
Sbjct: 337 WSCSVSKLGYSGTAIISRIKPLSVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDG 396
Query: 188 LKTLDKRLE-WDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEER 246
LK L R+E WD+ H+ +L+ KPV+L GDLN +H+ ID+ NP N RSAGFTIEER
Sbjct: 397 LKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEER 456
Query: 247 DSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSY 277
SF ++LLDKGF D+FR +P G YTYW Y
Sbjct: 457 QSFGANLLDKGFVDTFRKQHPGVVG-YTYWGY 487
>gi|282852873|ref|ZP_06262214.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|282555981|gb|EFB61602.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
Length = 254
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 127/222 (57%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA ++ ++ DADIF +Q+T+ P EV++ P Y YW +
Sbjct: 2 KFMSWNVNGLRAALRHGFVNTFTDLDADIFAIQDTRVE----PNEVQIDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GYAG ++TK KP V G G + + GR+ N ++I VP +G L+ LD
Sbjct: 58 KRKGYAGTAVFTKEKPITVANGFGVPEVDGEGRSITLEFSNFYFIDVQVPFSGEKLQRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W + F ++ KL KPVI+ GD++V+H IDLA P N R AGFT ER FS L
Sbjct: 118 FRELWAQTFRNYVTKLMQYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKEFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ +P YTYWSY + AR++N G +YF
Sbjct: 178 LNAGFIDTFRYFHPDE-AKYTYWSY-REDARAKNIGWRLDYF 217
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 126/213 (59%), Gaps = 9/213 (4%)
Query: 73 FKIASWNVAGLRACVKKE---GLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KT 128
K+ +WNV GLR +K E L ++E+ DI CLQETK + K Y +
Sbjct: 267 VKVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLIDGYDHS 326
Query: 129 YW-LSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGA 186
+W S K GY+G + +++KP V YG G + ++ GR + + + I VPN+G
Sbjct: 327 FWSCSVSKLGYSGTAIISRIKPLSVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNSGD 386
Query: 187 GLKTLDKRLE-WDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GLK L R+E WD+ H+ +L+ KPV+L GDLN +H+ ID+ NP N RSAGFTIEE
Sbjct: 387 GLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEE 446
Query: 246 RDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSY 277
R SF ++LLDKGF D+FR +P G YTYW Y
Sbjct: 447 RQSFGANLLDKGFVDTFRKQHPGVVG-YTYWGY 478
>gi|332522573|ref|ZP_08398825.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
gi|332313837|gb|EGJ26822.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
Length = 275
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 129/237 (54%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + EDADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDRLVSEDADIIAIQETKLSATG-PTKKHLES 59
Query: 123 ----FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNI 171
FP Y W SS + GYAG K N V G T + GR
Sbjct: 60 ILNYFPNYLHVWRSSVEPARKGYAGTMFLYKQTLNPVVTFPEIGAPTTMDSEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F + PNAG GL+ L R EWD + E+L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DDFFVTQVYTPNAGDGLRRLADRQEWDIKYAEYLAQLDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER F++LL+KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEERAGFTALLEKGFTDTFRHLHGDIPNVYTWWAQRSKTSKMNNTG 236
>gi|295099755|emb|CBK88844.1| exodeoxyribonuclease III [Eubacterium cylindroides T2-87]
Length = 249
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RA + K +D + DADIFC+QETK Q+ + + +Y S
Sbjct: 1 MKLISWNVNGIRAVLNKGFIDILNTLDADIFCIQETKAQPDQIEVDCDLYLYQYIN---S 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G +++K++P V YG+ +++ GR + + + PN+G GLK L
Sbjct: 58 AQRKGYSGTMIFSKIEPLSVHYGIDIPEHDTEGRVITLEFDSYYVVTVYTPNSGDGLKRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
+ R+EWDK F ++ LD KPV+L GDLNV+++ ID+ NP TN R+AGFT EERDSF
Sbjct: 118 EYRMEWDKAFSNYIQSLD--KPVLLTGDLNVANEEIDIKNPKTNRRNAGFTDEERDSFKK 175
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L DS+R LYP + Y++WSY K AR +N G
Sbjct: 176 NLLTILKDSYRTLYPDKV-EYSWWSYRFK-AREKNAG 210
>gi|257437815|ref|ZP_05613570.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
gi|257199738|gb|EEU98022.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
Length = 263
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 131/234 (55%), Gaps = 8/234 (3%)
Query: 62 NKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
NK + + +E + K+ SWNV GLRAC+ + DADIF +QETK P +
Sbjct: 3 NKISGIRKEQDMKLISWNVNGLRACLTHDFAASFAALDADIFSVQETKMQ----PGQADF 58
Query: 122 KFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKN 180
Y Y S+ K GY+G + K P VT G+G +++H GR + +
Sbjct: 59 APEGYTEYTYSAEKKGYSGTACWCKTAPLAVTTGIGREEHDHEGRVLTLEYPGFYLVNCY 118
Query: 181 VPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
PN+ GLK LD R+ W+ F +L++LDA+KPVIL GDLNV+H ID+ N TN SAG
Sbjct: 119 TPNSQDGLKRLDYRMTWEDAFRAYLLELDAKKPVILCGDLNVAHTEIDIKNAKTNRMSAG 178
Query: 241 FTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT +ER + LL GFTD+FR ++P Y++WSY AR +N G +YF
Sbjct: 179 FTDQERAKMTELLAAGFTDTFRAVHPDEV-KYSWWSYRFH-AREKNAGWRIDYF 230
>gi|449135634|ref|ZP_21771081.1| exodeoxyribonuclease III [Rhodopirellula europaea 6C]
gi|448885688|gb|EMB16112.1| exodeoxyribonuclease III [Rhodopirellula europaea 6C]
Length = 256
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 136/226 (60%), Gaps = 11/226 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE---YKTY 129
K+ SWNV G+RA + K D+++ E D+ CLQETK P +V + + + Y
Sbjct: 5 LKLISWNVNGIRASMDKGFRDFVESEQPDVLCLQETKAE----PEQVDLSWADELGYHQV 60
Query: 130 WLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
W ++ K GY+GV +++VKP+KVT GL + +++ GR + + + PN+ GL
Sbjct: 61 WNTATKRGYSGVSTWSRVKPSKVTKGLNIEEHDNEGRVLTTTFDDFHLVNVYTPNSQRGL 120
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
LD R++WD+ F +++ KL+ KPV+ GD+N +HK IDLANP N ++AGF+ +ER
Sbjct: 121 ARLDYRMQWDEAFLDYVKKLNRRKPVLFCGDVNCAHKEIDLANPKANRKNAGFSDQERAG 180
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ + GF DSFR + G Y++W+Y S AR+RN G +YF
Sbjct: 181 LDAITEAGFIDSFRQFHDG-PGHYSWWTYRSD-ARARNIGWRLDYF 224
>gi|313114917|ref|ZP_07800415.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622794|gb|EFQ06251.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
Length = 250
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 126/223 (56%), Gaps = 8/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRAC+ + DADIF +QETK P + Y Y S
Sbjct: 1 MKLISWNVNGLRACLTHGFAESFAALDADIFSVQETKMQ----PGQADFAPDGYTEYTYS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G + + +P VT G+G +++H GR + + PN+ GLK L
Sbjct: 57 AEKKGYSGTACWCREQPLSVTTGIGIEQHDHEGRVLTLEYPGFWLVNCYTPNSQDGLKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+EW+ F +L+ LDA+KPVIL GDLNV+H+ ID+ N TN SAGFT +ER +
Sbjct: 117 DYRMEWEDAFRAYLLALDAKKPVILCGDLNVAHREIDIKNDKTNHMSAGFTDQERGKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF DSFR L+P Y++WSY AR +N G +YF
Sbjct: 177 LLDAGFADSFRVLHPDEV-KYSWWSYRFH-AREKNAGWRIDYF 217
>gi|356498631|ref|XP_003518153.1| PREDICTED: apurinic endonuclease-redox protein-like [Glycine max]
Length = 507
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 131/221 (59%), Gaps = 12/221 (5%)
Query: 67 LGEEPNF-KIASWNVAGLRACVKKEG---LDYIKKEDADIFCLQETKCHETQLPPEVKMK 122
L ++ F K+ SWNV GLRA +K EG L ++ED D+ CLQETK E + E+K +
Sbjct: 240 LAQDTKFVKLLSWNVNGLRALLKLEGFSALQLAQREDFDVLCLQETKLQEKDIE-EIKQR 298
Query: 123 FPE--YKTYWLSS-PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIR 178
+ ++W S K GY+G + +++KP V YGLG + + GR + + I
Sbjct: 299 LIDGYANSFWTCSVSKLGYSGTAIISRIKPLSVRYGLGIPDHDSEGRLVTAEFDTFYLIC 358
Query: 179 KNVPNAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTR 237
VPN+G GLK L R+ EWD +L +L+ KPVIL GDLN +H+ ID+ NP N R
Sbjct: 359 GYVPNSGDGLKRLSYRVTEWDPSLSNYLKELEKSKPVILTGDLNCAHEEIDIYNPAGNKR 418
Query: 238 SAGFTIEERDSFS-SLLDKGFTDSFRHLYPKRTGAYTYWSY 277
SAGFT EER SF+ + L +GF D+FR +P G YTYW Y
Sbjct: 419 SAGFTDEERKSFAKNFLSRGFVDTFRRQHPGVIG-YTYWGY 458
>gi|269216697|ref|ZP_06160551.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
gi|269129931|gb|EEZ61014.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
Length = 264
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 129/235 (54%), Gaps = 20/235 (8%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
++ SWNV GLRA VKK + DAD+F LQETK E Q +++ P Y W +
Sbjct: 2 RLISWNVNGLRAVVKKGFNEAFAALDADVFALQETKLQEGQ----IELDLPGYVQNWSYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++++ +P +V + +GT + GR C +++ PNA L L+
Sbjct: 58 EKKGYSGTAVFSREEPLQVVHHVGTPALDTEGRICACEFEKFWFVDVYTPNAQPELARLE 117
Query: 193 KRLEWDKLFHEHLVKLDA-------------EKPVILIGDLNVSHKPIDLANPTTNTRSA 239
R+ WD F E L+A KPVI+ GD NV+H+ IDL NP +N +
Sbjct: 118 HRMAWDAAFREFCKNLEAGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDLKNPRSNRGNP 177
Query: 240 GFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
GF+ EER SF+SLLD GF D+FR L+P GAY++WSY AR N G +YF
Sbjct: 178 GFSDEERSSFTSLLDAGFADTFRMLHPDLEGAYSWWSY-RFNARKNNAGWRIDYF 231
>gi|261880757|ref|ZP_06007184.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
gi|270332533|gb|EFA43319.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
Length = 267
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 138/240 (57%), Gaps = 25/240 (10%)
Query: 73 FKIASWNVAGLRACVK----------KEGLD-YIKKEDADIFCLQETKCHETQLPPEVKM 121
K SWNV GLRACVK +G + Y + DAD FCLQETK QL +
Sbjct: 1 MKFVSWNVNGLRACVKPKVDAEGNVISKGFEAYFNELDADFFCLQETKMQAGQL----DL 56
Query: 122 KFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKN 180
+F Y++YW + + GY+G +YTK +P V G+G + +++ GR + +
Sbjct: 57 QFNGYRSYWNYAERKGYSGTAIYTKHEPMNVACGMGIEEHDNEGRVITLEYPEFYLVNVY 116
Query: 181 VPNAGAGL------KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTT 234
PN+ L K L R++W++ F ++ +L+ KPVI+ GDLNV+H+ ID+ N T
Sbjct: 117 TPNSQESLPGEVKPKRLGYRMKWEEDFRAYIKRLNETKPVIVCGDLNVAHQEIDIKNAKT 176
Query: 235 NTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
N +AGFT EER+ + LLD GF D+FR +YP++ Y++WSY + AR RNTG +YF
Sbjct: 177 NRNNAGFTDEEREKMTILLDNGFIDTFRTMYPEQV-IYSWWSYRFR-ARERNTGWRIDYF 234
>gi|312863077|ref|ZP_07723315.1| exodeoxyribonuclease III [Streptococcus vestibularis F0396]
gi|322516276|ref|ZP_08069206.1| exodeoxyribonuclease [Streptococcus vestibularis ATCC 49124]
gi|311100613|gb|EFQ58818.1| exodeoxyribonuclease III [Streptococcus vestibularis F0396]
gi|322125249|gb|EFX96622.1| exodeoxyribonuclease [Streptococcus vestibularis ATCC 49124]
Length = 275
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 137/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRAVIDTLVAENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYVNTWRSSVEPARKGYAGTMFLYKKELTPIITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
N F + PNAG GLK L +R WD+ + ++L KLDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 ANFFVTQVYTPNAGDGLKRLLERQIWDEKYADYLAKLDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL KGFTD++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERAGFTNLLAKGFTDTYRHLNGDVTGAYTWWAQRSKTSKINNTG 236
>gi|449437801|ref|XP_004136679.1| PREDICTED: apurinic endonuclease-redox protein-like [Cucumis
sativus]
Length = 501
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 131/228 (57%), Gaps = 7/228 (3%)
Query: 72 NFKIASWNVAGLRACVK-KEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TY 129
+ KI SWNV GLRA +K ++ ++ED D+ CLQETK E + K Y TY
Sbjct: 242 SVKILSWNVNGLRALLKGSSAVELAEREDFDVLCLQETKLQEKDILNITKSLVDGYHYTY 301
Query: 130 WLSS-PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAG 187
W S K GY+G + +++KP V YGLG ++++ GR + F + VPN+G G
Sbjct: 302 WTCSVSKLGYSGTAIISRIKPISVRYGLGISEHDGEGRVVMVEFDSFFLLNVYVPNSGDG 361
Query: 188 LKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEER 246
LK L R+ +WD ++ +L+ KPVIL GDLN +H+ IDL NP N +SAGFT EER
Sbjct: 362 LKRLSYRITQWDPSLSNYIKELEKSKPVILTGDLNCAHQEIDLYNPAGNRKSAGFTNEER 421
Query: 247 DSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
SF ++ L KGF D+FR +P G YTYW Y ++ +YF
Sbjct: 422 QSFETNFLQKGFVDTFRQKHPDVVG-YTYWGYRHGGRKTNKGWRLDYF 468
>gi|255026927|ref|ZP_05298913.1| hypothetical protein LmonocytFSL_12426 [Listeria monocytogenes FSL
J2-003]
Length = 178
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 114/181 (62%), Gaps = 5/181 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VKK L+Y ++ DADIFCLQETK E Q +++ P YK YW +
Sbjct: 2 KLISWNVNGLRAAVKKGFLEYFEEADADIFCLQETKLQEGQ----IELDLPAYKDYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+G ++TKV+P V YGLG +++ GR F + PN+ A LK LD
Sbjct: 58 VKKGYSGTAIFTKVEPLSVQYGLGIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ E++ LD KPV+L GDLNV+H+ IDL NP TN ++AGF+ EER FS+
Sbjct: 118 YRMTFEDAILEYVKNLDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAF 177
Query: 253 L 253
L
Sbjct: 178 L 178
>gi|418418131|ref|ZP_12991322.1| exodeoxyribonuclease [Streptococcus urinalis FB127-CNA-2]
gi|410869230|gb|EKS17193.1| exodeoxyribonuclease [Streptococcus urinalis FB127-CNA-2]
Length = 308
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 139/248 (56%), Gaps = 20/248 (8%)
Query: 61 CNKKNKLGEEPNFKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCH 111
C + K + + K+ SWN+ L RA + + ++ I KE+AD+ +QETK
Sbjct: 20 CYNEKKTKKVIHMKLISWNIDSLNAALTAESPRALLSRAVIETIAKENADVIAIQETKLS 79
Query: 112 E---TQLPPEVKMK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKN 160
T+ EV + FP+Y W SS + GYAG + LY K K+T+ T
Sbjct: 80 ANGPTKKHLEVLLSYFPDYSNVWRSSVEPARKGYAGTMFLYKKELEPKITFPEIKAPTTM 139
Query: 161 EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDL 220
+ GR N F + PNAG GLK L R WD+ + E+L+ LD +KPV+ GD
Sbjct: 140 DAEGRIITLEFDNVFITQVYTPNAGDGLKRLADRQIWDEKYKEYLISLDKQKPVLATGDY 199
Query: 221 NVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
NV+HK IDLANP +N RSAGFT EER F+SLL+ GFTDSFR+++ Y++W+ SK
Sbjct: 200 NVAHKEIDLANPASNRRSAGFTDEERQGFTSLLEGGFTDSFRYVHGDVPNVYSWWAQRSK 259
Query: 281 TARSRNTG 288
T++ NTG
Sbjct: 260 TSKINNTG 267
>gi|302783529|ref|XP_002973537.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
gi|300158575|gb|EFJ25197.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
Length = 306
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 144/252 (57%), Gaps = 18/252 (7%)
Query: 58 DYSCNKKNKLGEEPNF-KIASWNVAGLRACVKK------EGLDYIK---KEDADIFCLQE 107
D S + + L E N K+ SWNV GLRAC+K+ EG + ED D+ CLQE
Sbjct: 22 DPSTMRPSSLPSEKNLVKVISWNVNGLRACMKRKNELEEEGSALARLADSEDFDVLCLQE 81
Query: 108 TKCHETQLPPEVKMKFPEYK-TYW-LSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYG 164
TK E + + Y ++W S+ K GY+G L +++KP VTYGLG ++++ G
Sbjct: 82 TKLQEKDVEAIKQKILGGYSNSFWTCSTSKLGYSGCALISRIKPLSVTYGLGISQHDGEG 141
Query: 165 RNCNSNIVNTFYIRKNVPNAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVS 223
R + F + VPN+G L+ L R EWD F +L++L+ KPVI+ GDLN +
Sbjct: 142 RVVTAEFDTFFLVSVYVPNSGQRLERLTYRTTEWDPAFSTYLLELEKRKPVIVTGDLNCA 201
Query: 224 HKPIDLANPTTNTRSAGFTIEERDSFSS-LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTA 282
H+ ID+ +P N RSAGFT EER SF + +DKG D+FR +P G +TYWSY S A
Sbjct: 202 HEEIDIYDPDGNKRSAGFTSEERTSFQTNFIDKGLVDTFRKQHPLAVG-FTYWSYRSN-A 259
Query: 283 RSRNTGC-TNYF 293
R +N G +YF
Sbjct: 260 RPQNKGWRLDYF 271
>gi|145534702|ref|XP_001453095.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420795|emb|CAK85698.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 132/229 (57%), Gaps = 7/229 (3%)
Query: 71 PNFKIASWNVAGLRACVKKE-GLDYIKKEDADIFCLQETKCHETQLPPE-VKMKFPEYKT 128
P KIASWNV G+RA K+E + Y++ D+ CL E K + E + +F ++
Sbjct: 85 PTVKIASWNVNGIRAATKREQAVKYLQDTKFDVICLNELKADQAVFDKENLGAQFGKHYF 144
Query: 129 YWLS--SPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAG 185
+L+ K GY+GV + +KVKP V +G +K++ GR + + + VPNAG
Sbjct: 145 LYLNFCKNKGGYSGVAIASKVKPISVKCDIGISKHDQEGRTLTAEYERFYLVACYVPNAG 204
Query: 186 AGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
L+ LD R EWD F +L L +KP IL GDLNVSH IDLANP N ++AGFT E
Sbjct: 205 QKLERLDYRTKEWDVDFQNYLEDLRKKKPTILCGDLNVSHHEIDLANPAGNKKTAGFTQE 264
Query: 245 ERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
ERD F++ L KG+ DSFRHL+PK Y+Y+S + +S +YF
Sbjct: 265 ERDQFTNYLQKGWVDSFRHLHPKEV-KYSYFSARFNSKQSNKGWRLDYF 312
>gi|270015824|gb|EFA12272.1| hypothetical protein TcasGA2_TC004177 [Tribolium castaneum]
Length = 288
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 115/187 (61%), Gaps = 2/187 (1%)
Query: 46 GPMNEKLS-LNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFC 104
GP N ++ I++ C K+ G+ PNF I +WNV GLR+ +KK LD +K + DI C
Sbjct: 99 GPKNSTVTNWENINFKCTTKSPKGKAPNFHITTWNVDGLRSWLKKGCLDILKYDKPDILC 158
Query: 105 LQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYG 164
+QET C +LP EVK Y+T W SS K GYAGVG+ K KP V YG+ +K
Sbjct: 159 IQETMCAVYKLPEEVKT-IEGYETLWCSSDKDGYAGVGIMVKDKPLNVIYGIDSKEHDTE 217
Query: 165 RNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSH 224
C + TF + VPNAG L TL KRL+W++ F + + LD++KPVI+ GD+NV+H
Sbjct: 218 GRCITVEYETFVVNVYVPNAGRNLVTLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVAH 277
Query: 225 KPIDLAN 231
K IDLAN
Sbjct: 278 KEIDLAN 284
>gi|302787589|ref|XP_002975564.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
gi|300156565|gb|EFJ23193.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
Length = 306
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 138/235 (58%), Gaps = 17/235 (7%)
Query: 74 KIASWNVAGLRACVKK------EGLDYIK---KEDADIFCLQETKCHETQLPPEVKMKFP 124
K+ SWNV GLRAC+K+ EG + ED D+ CLQETK E + +
Sbjct: 39 KVISWNVNGLRACMKRKNELEEEGSVLARLANSEDFDVLCLQETKLQEKDVEAIKQKILG 98
Query: 125 EYK-TYW-LSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNV 181
Y ++W SS K GY+G L +++KP VTYGLG ++++ GR + F + V
Sbjct: 99 GYSNSFWTCSSSKLGYSGCALISRIKPVSVTYGLGISQHDGEGRVVTAEFDTFFLVSVYV 158
Query: 182 PNAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
PN+G L+ L R EWD F +L++L+ KPVI+ GDLN +H+ ID+ +P N RSAG
Sbjct: 159 PNSGQRLERLTYRTTEWDPAFSTYLLELEKRKPVIVTGDLNCAHEEIDIYDPDGNKRSAG 218
Query: 241 FTIEERDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
FT EER SF ++ +DKG D+FR +P G +TYWSY S AR +N G +YF
Sbjct: 219 FTCEERTSFQTNFIDKGLVDTFRKQHPLAVG-FTYWSYRSN-ARPQNKGWRLDYF 271
>gi|322373458|ref|ZP_08047994.1| exodeoxyribonuclease III [Streptococcus sp. C150]
gi|321278500|gb|EFX55569.1| exodeoxyribonuclease III [Streptococcus sp. C150]
Length = 275
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 138/237 (58%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + ++ +D + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRKVIDTLVAENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYDNTWRSSVEPARKGYAGTMFLYKKELTPVITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
N F + PNAG GLK L +R WD+ + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DNFFVTQVYTPNAGDGLKRLLERQIWDEKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL KGFTD++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERTGFTNLLTKGFTDTYRHLNGDVTGAYTWWAQRSKTSKINNTG 236
>gi|238854034|ref|ZP_04644388.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238833354|gb|EEQ25637.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 254
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 127/222 (57%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA ++ ++ DADIF +Q+T+ EV++ P Y YW +
Sbjct: 2 KFMSWNVNGLRAALRHGFVNTFTDLDADIFAIQDTRVEAN----EVQIDLPGYYQYWNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GYAG ++TK KP V G G + + GR+ N ++I VP +G L+ LD
Sbjct: 58 KRKGYAGTAVFTKEKPITVANGFGVPEVDGEGRSITLEFPNFYFIDVQVPFSGEKLQRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W + F ++ KL KPVI+ GD++V+H+ IDLA P N R AGFT ER FS L
Sbjct: 118 FRELWAQTFRNYVTKLMQYKPVIIGGDMSVAHEKIDLAEPDDNHRHAGFTGIERKEFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ +P YTYWSY + AR++N G +YF
Sbjct: 178 LNAGFIDTFRYFHPDE-AKYTYWSY-REDARAKNIGWRLDYF 217
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 128/216 (59%), Gaps = 13/216 (6%)
Query: 73 FKIASWNVAGLRACVKKE---GLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY--K 127
K+ +WNV GLRA +K E L ++E+ DI CLQETK + E+K +
Sbjct: 288 VKVMTWNVNGLRALLKLESFSALQLAQRENFDILCLQETKLQVKDVE-EIKNTLIDGYDH 346
Query: 128 TYW-LSSPKAGYAGVGLYTKVKPNKVTYGLG---TKNEHYGRNCNSNIVNTFYIRKNVPN 183
++W S K GY+G + +++KP V YG G + ++ GR + + + I VPN
Sbjct: 347 SFWSCSVSKLGYSGTAIISRIKPLSVRYGTGLSGSDHDMEGRIVTAEFDSFYLINTYVPN 406
Query: 184 AGAGLKTLDKRLE-WDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFT 242
+G GLK L R+E WD+ H+ +L+ KPV+L GDLN +H+ ID+ NP N R+AGFT
Sbjct: 407 SGDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRNAGFT 466
Query: 243 IEERDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSY 277
IEER SF ++ LDKGF D+FR +P G YTYW Y
Sbjct: 467 IEERQSFGANFLDKGFVDTFRKQHPGVVG-YTYWGY 501
>gi|300362953|ref|ZP_07059123.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353003|gb|EFJ68881.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 268
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 127/222 (57%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV GLRA ++ ++ DADIF +Q+T+ EV++ P Y YW +
Sbjct: 16 KFMSWNVNGLRAALRHGFVNTFTDLDADIFAIQDTRVEAN----EVQIDLPGYYQYWNYA 71
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GYAG ++TK KP V G G + + GR+ N ++I VP +G L+ LD
Sbjct: 72 KRKGYAGTAVFTKEKPITVANGFGVPEVDGEGRSITLEFPNFYFIDVQVPFSGEKLQRLD 131
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R W + F ++ KL KPVI+ GD++V+H+ IDLA P N R AGFT ER FS L
Sbjct: 132 FRELWAQTFRNYVTKLMQYKPVIIGGDMSVAHEKIDLAEPDDNHRHAGFTGIERKEFSEL 191
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ GF D+FR+ +P YTYWSY + AR++N G +YF
Sbjct: 192 LNAGFIDTFRYFHPDE-AKYTYWSY-REDARAKNIGWRLDYF 231
>gi|357639304|ref|ZP_09137177.1| exodeoxyribonuclease III [Streptococcus urinalis 2285-97]
gi|357587758|gb|EHJ57166.1| exodeoxyribonuclease III [Streptococcus urinalis 2285-97]
Length = 277
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 134/236 (56%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + ++ I KE+AD+ +QETK T+ EV
Sbjct: 1 MKLISWNIDSLNAALTAESPRALLSRAVIETIAKENADVIAIQETKLSANGPTKKHLEVL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP+Y W SS + GYAG + LY K K+T+ T + GR
Sbjct: 61 LSYFPDYSNVWRSSVEPARKGYAGTMFLYKKELEPKITFPEIKAPTTMDAEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
N F + PNAG GLK L R WD+ + E+L+ LD +KPV+ GD NV+HK IDLANP
Sbjct: 121 NVFITQVYTPNAGDGLKRLADRQIWDEKYKEYLISLDKQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RSAGFT EER F+SLL+ GFTDSFR+++ Y++W+ SKT++ NTG
Sbjct: 181 ASNRRSAGFTDEERQGFTSLLEGGFTDSFRYVHGDVPNVYSWWAQRSKTSKINNTG 236
>gi|295101467|emb|CBK99012.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii L2-6]
Length = 250
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 126/223 (56%), Gaps = 8/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRAC+ + DAD+F +QETK P + Y Y S
Sbjct: 1 MKLISWNVNGLRACLTHDFAASFAALDADVFSVQETKMQ----PGQADFAPEGYTEYTYS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G + K P VT G+G + ++H GR ++ + PN+ GLK L
Sbjct: 57 AEKKGYSGTACWCKTVPLSVTTGIGIEEHDHEGRVLTLEYPESYLVNCYTPNSQDGLKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+ W+ F +L++LDA+KPVIL GDLNV+H+ ID+ N TN SAGFT +ER +
Sbjct: 117 DYRMTWEDAFRAYLLELDAKKPVILCGDLNVAHQEIDIKNAKTNRMSAGFTDQERAKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GFTDSFR ++P Y++WSY AR +N G +YF
Sbjct: 177 LLAVGFTDSFRAIHPDEV-KYSWWSYRFH-AREKNAGWRIDYF 217
>gi|421452945|ref|ZP_15902301.1| Exodeoxyribonuclease III [Streptococcus salivarius K12]
gi|400181254|gb|EJO15521.1| Exodeoxyribonuclease III [Streptococcus salivarius K12]
Length = 275
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 137/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRAVIDTLVAENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYDNTWRSSVEPARKGYAGTMFLYKKELTPVITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
N F + PNAG GLK L +R WD+ + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DNFFVTQVYTPNAGDGLKRLLERQIWDEKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL KGFTD++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERAGFTNLLAKGFTDTYRHLNGDVTGAYTWWAQRSKTSKINNTG 236
>gi|251781878|ref|YP_002996180.1| 3'-exo-deoxyribonuclease [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|386316404|ref|YP_006012568.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|242390507|dbj|BAH80966.1| putative 3'-exo-deoxyribonuclease [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|323126691|gb|ADX23988.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 275
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 130/236 (55%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIETL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP+Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPDYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRMITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
N F + PNAG GL+ L+ R WD+ + ++LV+LDA+KPV+ GD NV+HK IDLANP
Sbjct: 121 NFFVTQVYTPNAGDGLRRLEDRQIWDQKYADYLVELDAQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 GSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPNVYTWWAQRSKTSKINNTG 236
>gi|406894390|gb|EKD39215.1| hypothetical protein ACD_75C00473G0002 [uncultured bacterium]
Length = 484
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 127/223 (56%), Gaps = 5/223 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV G+RA KK + ++ DAD+ +QETK E QL E+K P Y +YW S
Sbjct: 228 MKCISWNVNGIRAVEKKGFAEQLQAFDADVVAIQETKAQEDQLSDELK-NIPGYTSYWHS 286
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+GV +YT++ P V YG+G + GR + + I PN+ LK L
Sbjct: 287 AERKGYSGVAVYTRLAPAAVRYGMGDPEFDCEGRVLTLEFADCYLINIYFPNSAEELKRL 346
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D +L ++ +L+ KPVIL GD NV+HK IDL NP N ++AGFT EER S
Sbjct: 347 DYKLRFNNRLLAFAKELEQRKPVILCGDFNVAHKEIDLKNPKANEKNAGFTPEERAWMDS 406
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ GF D+FR L+ + G YT+WSY AR++N G +YF
Sbjct: 407 FVAAGFVDTFR-LFNQDPGQYTWWSY-RFNARAKNVGWRIDYF 447
>gi|145529087|ref|XP_001450332.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417943|emb|CAK82935.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 132/224 (58%), Gaps = 8/224 (3%)
Query: 71 PNFKIASWNVAGLRACVKKE-GLDYIKKEDADIFCLQETKCHETQLPPE-VKMKFPEYKT 128
P KI+SWN+ G+RA K E + Y+ DI CL E K + E + KF ++
Sbjct: 85 PTVKISSWNINGIRAVTKHESAVQYLNDSKFDIICLNELKADQDVFDKENLGAKFGKHYF 144
Query: 129 YWLS--SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAG 185
+L+ KAGY+GV + +KVKP V +G K++ GR + + + VPN+G
Sbjct: 145 LYLNFCKSKAGYSGVAIASKVKPLSVKCDIGVDKHDQEGRTLTAEFEQFYLVSCYVPNSG 204
Query: 186 AGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
L+ LD R EWD F +L L +KP IL GDLNV+H IDL+NP N ++AGFT++
Sbjct: 205 QKLERLDYRTKEWDIDFQNYLEGLRKKKPTILCGDLNVAHHEIDLSNPAGNKKTAGFTLQ 264
Query: 245 ERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
ERD FS+ L KG+ DSFRHL+PK Y+++S S +RS+N G
Sbjct: 265 ERDQFSNYLQKGWVDSFRHLHPKEV-KYSFFSARS-NSRSQNKG 306
>gi|168036056|ref|XP_001770524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678232|gb|EDQ64693.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 363
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 138/240 (57%), Gaps = 17/240 (7%)
Query: 69 EEPNFKIASWNVAGLRACVKKEGLDYIK---------KEDADIFCLQETKCHETQLPPEV 119
+E K+ SWNV GLRA +K++G ++ + +ED D+ CLQETK E +
Sbjct: 93 DEKVVKLLSWNVNGLRALLKEKGAEHEQGSMIARLAAREDFDVLCLQETKLQEKDVADIR 152
Query: 120 K--MKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFY 176
K + E + S+ K GY+G + +++KP V YGLG N + GR ++
Sbjct: 153 KSLLASHEVSLWGCSTSKLGYSGTAIISRIKPISVQYGLGIPNHDQEGRLITCEFDTFYF 212
Query: 177 IRKNVPNAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN 235
+ VPN+GA L+ L R EWD HL +L+ +KPVIL GDLN +H+ ID+ +P N
Sbjct: 213 VVSYVPNSGAKLERLAYRTQEWDVALSSHLRELEKKKPVILTGDLNCAHEDIDINDPAGN 272
Query: 236 TRSAGFTIEERDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+SAGFT EER+SF ++ LD GF D+FR +P AYTYW Y + +R +N G +YF
Sbjct: 273 RKSAGFTDEERESFKTNFLDHGFVDTFRKQHPNAV-AYTYWGYRT-ASRPKNKGWRLDYF 330
>gi|228476989|ref|ZP_04061627.1| exodeoxyribonuclease III [Streptococcus salivarius SK126]
gi|387760772|ref|YP_006067749.1| exodeoxyribonuclease III [Streptococcus salivarius 57.I]
gi|228251008|gb|EEK10179.1| exodeoxyribonuclease III [Streptococcus salivarius SK126]
gi|339291539|gb|AEJ52886.1| exodeoxyribonuclease III [Streptococcus salivarius 57.I]
Length = 275
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 137/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRAVIDTLVAENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYDNTWRSSVEPARKGYAGTMFLYKKELNPVITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
N F + PNAG GLK L +R WD+ + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DNFFVTQVYTPNAGDGLKRLLERQIWDEKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL KGFTD++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERAGFTNLLAKGFTDTYRHLNGDVTGAYTWWAQRSKTSKINNTG 236
>gi|401681190|ref|ZP_10813095.1| exodeoxyribonuclease III [Streptococcus sp. AS14]
gi|400187325|gb|EJO21520.1| exodeoxyribonuclease III [Streptococcus sp. AS14]
Length = 275
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 132/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + L ++ E+ADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAENADIIAIQETKLSATG-PTKKHLEI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y+ W SS + GYAG + LY K +T+ G + + GR
Sbjct: 60 LTNLFPDYENTWRSSQEPARKGYAGTMFLYKKELTPTITFPEIGAPSTMDVEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
N F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DNFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDGQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|387784662|ref|YP_006070745.1| exodeoxyribonuclease [Streptococcus salivarius JIM8777]
gi|338745544|emb|CCB95910.1| exodeoxyribonuclease [Streptococcus salivarius JIM8777]
Length = 275
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 137/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRAVIDTLVAENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYDNTWRSSVEPARKGYAGTMFLYKKELNPVITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
N F + PNAG GLK L +R WD+ + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 GNFFVTQVYTPNAGDGLKRLLERQIWDEKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL KGFTD++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERAGFTNLLAKGFTDTYRHLNGDVTGAYTWWAQRSKTSKINNTG 236
>gi|422859621|ref|ZP_16906265.1| exodeoxyribonuclease [Streptococcus sanguinis SK330]
gi|327470504|gb|EGF15960.1| exodeoxyribonuclease [Streptococcus sanguinis SK330]
Length = 275
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 131/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + L ++ EDADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAEDADIIAIQETKLSATG-PTKKHLEI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 60 LTNLFPDYENTWRSSQEPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DGFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDGQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|365904744|ref|ZP_09442503.1| Exodeoxyribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 253
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 128/222 (57%), Gaps = 8/222 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV GLRA VK + D +K DADIF +QETK E Q + + P Y Y+ +
Sbjct: 2 KLISWNVNGLRAVVKHDFKDTFEKLDADIFSIQETKLQEGQ----IDLDLPGYHQYFNYA 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ GY+G +++K +P + GL H GR + + I PN+ LK LD
Sbjct: 58 DRKGYSGTAVFSKQEPLNIETGLDDDEFNHEGRTITLEYPDFYLINSYTPNSQPKLKRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ ++ +H+ L +KPVIL GDLNV+H ID+ N TN ++ GF+ EER+ FS L
Sbjct: 118 FRMGYNDAMWKHMQTLSKKKPVILCGDLNVAHNEIDIKNDKTNHKNPGFSDEERNKFSEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LD GFTD+FR+L+P+ Y++WSY AR N G +YF
Sbjct: 178 LDSGFTDTFRYLHPEEV-KYSWWSYRF-NARKNNAGWRIDYF 217
>gi|406893678|gb|EKD38677.1| hypothetical protein ACD_75C00647G0002 [uncultured bacterium]
Length = 500
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 129/230 (56%), Gaps = 5/230 (2%)
Query: 66 KLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE 125
K+ +E K SWNV G+RA KK D ++ DAD+ LQETK E QL E+K P
Sbjct: 221 KMTKEHVMKCISWNVNGIRAVAKKGFADQLRTFDADVVALQETKIQEDQLTDELK-NIPG 279
Query: 126 YKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNA 184
Y +YW + + GY+GV YT++ P V YGLG + GR + + I PN+
Sbjct: 280 YTSYWHCAERKGYSGVAFYTRIPPVAVRYGLGDPEFDCEGRVLTLEFADCYLINIYFPNS 339
Query: 185 GAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
L L +L ++ + +L+ +KPVIL GD NV+HK IDL NP TN ++AGFT E
Sbjct: 340 AEKLVRLAHKLRFNDRLLGYARELEQKKPVILCGDFNVAHKEIDLKNPKTNVKNAGFTPE 399
Query: 245 ERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
ER S + GF D+FR L+ + YT+WSY AR++N G +YF
Sbjct: 400 ERAWMDSFVAAGFVDTFR-LFCEDPDQYTWWSY-RFNARAKNVGWRIDYF 447
>gi|386345233|ref|YP_006041397.1| 3-exo-deoxyribonuclease [Streptococcus thermophilus JIM 8232]
gi|339278694|emb|CCC20442.1| 3-exo-deoxyribonuclease [Streptococcus thermophilus JIM 8232]
Length = 275
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 137/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTGDSTRAQLSRAVIDTLVTENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYVITWRSSVEPARKGYAGTMFLYKKELTPVITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK L +R WDK + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DTFFVTQVYTPNAGDGLKRLLERQIWDKKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL+KGFTD++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERAGFTNLLNKGFTDTYRHLNGDVTGAYTWWAQRSKTSKINNTG 236
>gi|19745558|ref|NP_606694.1| 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS8232]
gi|19747679|gb|AAL97193.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS8232]
Length = 275
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 130/236 (55%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIEAL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG K N V+ G T + GR
Sbjct: 61 LSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVSTFPEIGAPTTMDAEGRIITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLAAGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RS GFT EER SF++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 SSNRRSPGFTDEERQSFTNLLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKINNTG 236
>gi|329116616|ref|ZP_08245333.1| exodeoxyribonuclease III [Streptococcus parauberis NCFD 2020]
gi|326907021|gb|EGE53935.1| exodeoxyribonuclease III [Streptococcus parauberis NCFD 2020]
Length = 275
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 129/236 (54%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHET----QLPPEV 119
K+ SWN+ L RA + + +D + +DADI +QETK T + +
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDTLVAQDADIIAIQETKLSATGPTKKHIESI 60
Query: 120 KMKFPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FPEY W SS + GYAG + LY K VT+ G T + GR
Sbjct: 61 ESYFPEYVHVWRSSVEPARKGYAGTMFLYKKSLNPIVTFPEIGAPTTMDAEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GLK L R WD + E+L +LDA+KPV+ GD NV+H IDLANP
Sbjct: 121 DCFVTQVYTPNAGDGLKRLTDRQLWDIKYAEYLAQLDAQKPVLATGDYNVAHNEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RSAGFT EER F+ LL GFTD+FRH++ YT+W+ SKT++ NTG
Sbjct: 181 ASNRRSAGFTDEERAGFTMLLGHGFTDTFRHIHGDIPNVYTWWAQRSKTSKINNTG 236
>gi|293115606|ref|ZP_05792271.2| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292809044|gb|EFF68249.1| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 237
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 7/204 (3%)
Query: 92 LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNK 151
+D+ DADIFCLQE K E Q ++ Y +YW + K GY+G +++K KP
Sbjct: 6 MDFFDSVDADIFCLQEIKLSEGQ----IEWNKENYYSYWNYAEKKGYSGTAVFSKEKPLS 61
Query: 152 VTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDA 210
V YG+G +++H GR N + + PN+ L L+ R++W+ F L L
Sbjct: 62 VKYGIGIDEHDHEGRVITLEFENFYMVTVYTPNSQRELTRLEYRMKWEDDFRNFLNDLRK 121
Query: 211 EKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTG 270
KPV++ GD+NV+HK IDL NP TN ++AGFT EER + LLD GF D+FR+ YP
Sbjct: 122 TKPVVVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERQKMTELLDSGFIDTFRYFYPDVEQ 181
Query: 271 AYTYWSYMSKTARSRNTGC-TNYF 293
Y++WSYM K +R +N G +YF
Sbjct: 182 KYSWWSYMFK-SREKNAGWRIDYF 204
>gi|422820757|ref|ZP_16868950.1| exodeoxyribonuclease [Streptococcus sanguinis SK353]
gi|324991375|gb|EGC23308.1| exodeoxyribonuclease [Streptococcus sanguinis SK353]
Length = 275
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 133/237 (56%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + L ++ E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAENADIIAIQETKLSASG-PTKKHLEI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FPEY+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 60 LTNLFPEYENTWRSSQEPARKGYAGTMFLYKKELTPIVTFPEIGAPSTMDVEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F + PNAG GLK LD R WD + E+L +LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DDFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLARLDGQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNKYTWWAQRSKTSKINNTG 236
>gi|419706513|ref|ZP_14234033.1| 3'-exo-deoxyribonuclease [Streptococcus salivarius PS4]
gi|383283748|gb|EIC81692.1| 3'-exo-deoxyribonuclease [Streptococcus salivarius PS4]
Length = 275
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 137/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRAVIDTLVAENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYDNTWRSSVEPARKGYAGTMFLYKKELTPVITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK L +R WD+ + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DKFFVTQVYTPNAGDGLKRLLERQIWDEKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER+ F++LL KGFTD++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEEREGFTNLLAKGFTDTYRHLNGDVTGAYTWWAQRSKTSKINNTG 236
>gi|262283107|ref|ZP_06060874.1| exodeoxyribonuclease III [Streptococcus sp. 2_1_36FAA]
gi|262261359|gb|EEY80058.1| exodeoxyribonuclease III [Streptococcus sp. 2_1_36FAA]
Length = 275
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 131/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + L ++ EDADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAEDADIIAIQETKLSATG-PTKKHLEI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 60 LANLFPGYENTWRSSQEPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DDFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDQQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|115440515|ref|NP_001044537.1| Os01g0801000 [Oryza sativa Japonica Group]
gi|55296319|dbj|BAD68137.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
gi|55297696|dbj|BAD68286.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
gi|113534068|dbj|BAF06451.1| Os01g0801000 [Oryza sativa Japonica Group]
gi|215715310|dbj|BAG95061.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222619408|gb|EEE55540.1| hypothetical protein OsJ_03774 [Oryza sativa Japonica Group]
Length = 499
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 130/230 (56%), Gaps = 11/230 (4%)
Query: 73 FKIASWNVAGLRACVKKEGL---DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KT 128
KI SWNV GL+A +K G ++ED DI CLQETK E + + Y +
Sbjct: 239 LKILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHS 298
Query: 129 YWLSS-PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGA 186
+W S K GY+G + ++VKP + YGLG + + GR + + + VPN+G
Sbjct: 299 FWTCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVVTVEFNDFYLLTAYVPNSGD 358
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GLK L R+ EWD ++ L+ KPVIL GDLN +H+ ID+ +P N RSAGFTIEE
Sbjct: 359 GLKRLTYRVTEWDPSLGNYMKDLEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEE 418
Query: 246 RDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+SF ++ L KGF D+FR +P G Y+YW Y AR N G +YF
Sbjct: 419 RESFETNFLSKGFVDTFRKQHPNVVG-YSYWGY-RHNARKTNKGWRLDYF 466
>gi|218189226|gb|EEC71653.1| hypothetical protein OsI_04096 [Oryza sativa Indica Group]
Length = 499
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 130/230 (56%), Gaps = 11/230 (4%)
Query: 73 FKIASWNVAGLRACVKKEGL---DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KT 128
KI SWNV GL+A +K G ++ED DI CLQETK E + + Y +
Sbjct: 239 LKILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHS 298
Query: 129 YWLSS-PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGA 186
+W S K GY+G + ++VKP + YGLG + + GR + + + VPN+G
Sbjct: 299 FWTCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVVTVEFNDFYLLTAYVPNSGD 358
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GLK L R+ EWD ++ L+ KPVIL GDLN +H+ ID+ +P N RSAGFTIEE
Sbjct: 359 GLKRLTYRVTEWDPSLGNYMKDLEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEE 418
Query: 246 RDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+SF ++ L KGF D+FR +P G Y+YW Y AR N G +YF
Sbjct: 419 RESFETNFLSKGFVDTFRKQHPNVVG-YSYWGY-RHNARKTNKGWRLDYF 466
>gi|383479523|ref|YP_005388417.1| exodeoxyribonuclease III protein ExoA [Streptococcus pyogenes
MGAS15252]
gi|383493446|ref|YP_005411122.1| exodeoxyribonuclease III protein ExoA [Streptococcus pyogenes
MGAS1882]
gi|378927513|gb|AFC65719.1| exodeoxyribonuclease III protein ExoA [Streptococcus pyogenes
MGAS15252]
gi|378929174|gb|AFC67591.1| exodeoxyribonuclease III protein ExoA [Streptococcus pyogenes
MGAS1882]
Length = 303
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 134/249 (53%), Gaps = 26/249 (10%)
Query: 60 SCNKKNKLGEEPNFKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKC 110
S K+N++ K+ SWN+ L RA + + LD + +DADI +QETK
Sbjct: 22 SVRKRNQM------KLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKL 75
Query: 111 HE---TQLPPEVKMK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTK 159
T+ E + FP Y W SS + GYAG K N V G T
Sbjct: 76 SAKGPTKKHIETLLSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTT 135
Query: 160 NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGD 219
+ GR + F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD
Sbjct: 136 MDAEGRIITLEFEDFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATGD 195
Query: 220 LNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMS 279
NV+HK IDLANP++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ S
Sbjct: 196 YNVAHKEIDLANPSSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRS 255
Query: 280 KTARSRNTG 288
KT++ NTG
Sbjct: 256 KTSKINNTG 264
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 122/214 (57%), Gaps = 11/214 (5%)
Query: 74 KIASWNVAGLRACVKKE---GLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KTY 129
K+ +WNV GLR +K E L ++E+ DI CLQETK + K Y ++
Sbjct: 277 KVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLIDGYDHSF 336
Query: 130 W-LSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHY---GRNCNSNIVNTFYIRKNVPNAG 185
W S K GY+G + +++KP V YG G + GR + + + I VPN+G
Sbjct: 337 WSCSVSKLGYSGTAIISRIKPLSVRYGTGLSGSDHDTEGRIVTAEFDSFYLINTYVPNSG 396
Query: 186 AGLKTLDKRLE-WDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIE 244
GLK L R+E WD+ H+ +L+ KPV+L GDLN +H+ ID+ NP N RSAGFT E
Sbjct: 397 DGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTEE 456
Query: 245 ERDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSY 277
ER SF ++ LDKGF D+FR +P G YTYW Y
Sbjct: 457 ERQSFGANFLDKGFVDTFRKQHPGVVG-YTYWGY 489
>gi|406659471|ref|ZP_11067609.1| exodeoxyribonuclease III [Streptococcus iniae 9117]
gi|405577580|gb|EKB51728.1| exodeoxyribonuclease III [Streptococcus iniae 9117]
Length = 275
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 131/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + DADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTAESPRALLSRAVIDTLVAHDADIIAIQETKLSATG-PSKKHLEA 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP Y W SS + GYAG + LY + KV++ G T + GR
Sbjct: 60 LDNYFPGYHNVWRSSIEPARKGYAGTLFLYKENLTPKVSFPEIGAPTTMDSEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F + PNAG LK L+ R WD + +LVKLD +KPV+ GD NV+H+ IDLAN
Sbjct: 120 DDYFVTQVYTPNAGDALKRLEDRQAWDIAYANYLVKLDQQKPVLATGDYNVAHEEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RSAGFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSAGFTDEERQGFTNLLSKGFTDTFRHLHGNIPNVYTWWAQRSKTSKINNTG 236
>gi|449494709|ref|XP_004159624.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Cucumis sativus]
Length = 501
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 130/228 (57%), Gaps = 7/228 (3%)
Query: 72 NFKIASWNVAGLRACVK-KEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-TY 129
+ KI SWNV GLRA +K ++ ++ED D+ CLQETK E + K Y TY
Sbjct: 242 SVKILSWNVNGLRALLKGSSAVELAEREDFDVLCLQETKLQEKDILNITKSLVDGYHYTY 301
Query: 130 WLSS-PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAG 187
W S K GY+G + +++KP V YGLG ++++ GR + + VPN+G G
Sbjct: 302 WTCSVSKLGYSGTAIISRIKPISVRYGLGISEHDGEGRVVMVEFDSFXLLNVYVPNSGDG 361
Query: 188 LKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEER 246
LK L R+ +WD ++ +L+ KPVIL GDLN +H+ IDL NP N +SAGFT EER
Sbjct: 362 LKRLSYRITQWDPSLSNYIKELEKSKPVILTGDLNCAHQEIDLYNPAGNRKSAGFTNEER 421
Query: 247 DSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
SF ++ L KGF D+FR +P G YTYW Y ++ +YF
Sbjct: 422 QSFETNFLQKGFVDTFRQKHPDVVG-YTYWGYRHGGRKTNKGWRLDYF 468
>gi|71902993|ref|YP_279796.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS6180]
gi|71802088|gb|AAX71441.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS6180]
Length = 303
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 134/249 (53%), Gaps = 26/249 (10%)
Query: 60 SCNKKNKLGEEPNFKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKC 110
S K+N++ K+ SWN+ L RA + + LD + +DADI +QETK
Sbjct: 22 SVRKRNQM------KLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKL 75
Query: 111 HE---TQLPPEVKMK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTK 159
T+ E + FP Y W SS + GYAG K N V G T
Sbjct: 76 SAKGPTKKHIETLLSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTT 135
Query: 160 NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGD 219
+ GR + F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD
Sbjct: 136 MDAEGRIITLEFEDFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATGD 195
Query: 220 LNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMS 279
NV+HK IDLANP++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ S
Sbjct: 196 YNVAHKEIDLANPSSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRS 255
Query: 280 KTARSRNTG 288
KT++ NTG
Sbjct: 256 KTSKINNTG 264
>gi|94543355|gb|ABF33403.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS10270]
Length = 303
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 134/249 (53%), Gaps = 26/249 (10%)
Query: 60 SCNKKNKLGEEPNFKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKC 110
S K+N++ K+ SWN+ L RA + + LD + +DADI +QETK
Sbjct: 22 SVRKRNQM------KLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKL 75
Query: 111 HE---TQLPPEVKMK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTK 159
T+ E + FP Y W SS + GYAG K N V G T
Sbjct: 76 SAKGPTKKHIETLLSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTT 135
Query: 160 NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGD 219
+ GR + F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD
Sbjct: 136 MDAEGRIITLEFEDFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATGD 195
Query: 220 LNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMS 279
NV+HK IDLANP++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ S
Sbjct: 196 YNVAHKEIDLANPSSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRS 255
Query: 280 KTARSRNTG 288
KT++ NTG
Sbjct: 256 KTSKINNTG 264
>gi|51246268|ref|YP_066152.1| exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila LSv54]
gi|50877305|emb|CAG37145.1| probable exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila
LSv54]
Length = 480
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 132/225 (58%), Gaps = 5/225 (2%)
Query: 71 PNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYW 130
P+++ SWNV G+RA KK +D +++ + D+ LQETK QL +K P Y +YW
Sbjct: 226 PSYRYISWNVNGIRAVEKKGFIDIVQELNPDVIGLQETKAQPEQLSESLK-NIPGYTSYW 284
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLK 189
S+ + GY+GV Y+K +P +V YG+G + + GR + + PN+ LK
Sbjct: 285 YSAQRKGYSGVAFYSKHEPLQVIYGIGAEEFDCEGRVITLEFADHYLATIYFPNSADQLK 344
Query: 190 TLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSF 249
LD +L +++ KL+ EK VIL GD NV+HK IDL NP +N ++AGFT EER
Sbjct: 345 RLDYKLRFNRALLAFFQKLEKEKAVILCGDFNVAHKEIDLKNPKSNVKNAGFTPEERAWM 404
Query: 250 SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+ G+TD+FR L+ + Y++WSY +ARS+N G +YF
Sbjct: 405 DEFLEAGYTDTFR-LFNQDPENYSWWSYRF-SARSKNIGWRIDYF 447
>gi|417317886|ref|ZP_12104489.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
gi|328473849|gb|EGF44679.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
Length = 225
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 117/194 (60%), Gaps = 7/194 (3%)
Query: 102 IFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGT-KN 160
F ++ K E Q +++ P YK YW + K GY+G ++TKV+P V YGLG ++
Sbjct: 4 FFVCRKLKLQEGQ----IELDLPAYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGLGVPEH 59
Query: 161 EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDL 220
+ GR F + PN+ A LK LD R+ ++ E++ LD KPV+L GDL
Sbjct: 60 DTEGRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDL 119
Query: 221 NVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSK 280
NV+H+ IDL NP TN ++AGF+ EER FS+ LD GF DSFR+ YP T AY++WSY
Sbjct: 120 NVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYPDLTDAYSWWSY-RM 178
Query: 281 TARSRNTGC-TNYF 293
AR+RNTG +YF
Sbjct: 179 NARARNTGWRIDYF 192
>gi|55823454|ref|YP_141895.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus CNRZ1066]
gi|55739439|gb|AAV63080.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus CNRZ1066]
Length = 275
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 137/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTGDSARAQLSRAVIDTLVTENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYVITWRSSVEPARKGYAGTMFLYKKELTPVITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK L +R WD+ + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DTFFVTQVYTPNAGDGLKRLLERQIWDEKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL+KGFTD++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERAGFTNLLNKGFTDTYRHLNGDVTGAYTWWAQRSKTSKINNTG 236
>gi|326523229|dbj|BAJ88655.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 531
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 129/229 (56%), Gaps = 9/229 (3%)
Query: 73 FKIASWNVAGLRACVKKEGL---DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KT 128
KI SWNV GLRA VK G + ++ED D+ CLQETK E + + Y +
Sbjct: 271 LKILSWNVNGLRALVKSRGFSIHELAQREDFDVLCLQETKMQEKDVEVIKESLLEGYTNS 330
Query: 129 YWLSS-PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGA 186
+W S K GY+G + ++VKP + YGLG + + GR + + + VPN+G
Sbjct: 331 FWTCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRIVTVEFDDFYLLTAYVPNSGD 390
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GLK L R+ EWD ++ +L+ KPVIL GDLN +H+ ID+ +P N+RSAGFT EE
Sbjct: 391 GLKRLTYRVTEWDPCLGNYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNSRSAGFTKEE 450
Query: 246 RDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
R SF ++ L KGF D+FR +P G Y+YW Y ++ +YF
Sbjct: 451 RKSFETNFLSKGFVDTFRKQHPDVVG-YSYWGYRHNCRKTNRGWRLDYF 498
>gi|307185028|gb|EFN71257.1| Recombination repair protein 1 [Camponotus floridanus]
Length = 232
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 126/236 (53%), Gaps = 50/236 (21%)
Query: 53 SLNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHE 112
+L++ID+ C K N+ G+ N KI +WNV+G+RA +KK G+DYI KEDADI LQETKC +
Sbjct: 8 NLDEIDFMCTKSNEEGKNYNLKICTWNVSGIRAVIKKNGMDYIIKEDADIVALQETKCDK 67
Query: 113 TQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIV 172
+LP EVK+ P Y Y++ S K GY GV L++K KP V YGL +
Sbjct: 68 DKLPNEVKL--PGYHHYFVDSKKPGYCGVALFSKEKPISVKYGLNNSD------------ 113
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
F + AE P I +NV L NP
Sbjct: 114 ----------------------------FDSEGRMITAEFPEFFI--VNVY-----LKNP 138
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
TNT++AGFT EER + L GF D+FR LYP + GAYT+WSY + AR+++ G
Sbjct: 139 KTNTKNAGFTKEERGDMTDFLATGFIDTFRLLYPDKEGAYTFWSYFA-NARNKDIG 193
>gi|410494191|ref|YP_006904037.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417753299|ref|ZP_12401431.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|333770440|gb|EGL47475.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|410439351|emb|CCI61979.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 275
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 130/236 (55%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIETL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP+Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPDYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRMITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ L+ R WD+ + ++LV+LDA+KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLEDRQIWDQKYADYLVELDAQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 GSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKINNTG 236
>gi|339640871|ref|ZP_08662315.1| exodeoxyribonuclease III [Streptococcus sp. oral taxon 056 str.
F0418]
gi|339454140|gb|EGP66755.1| exodeoxyribonuclease III [Streptococcus sp. oral taxon 056 str.
F0418]
Length = 275
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 130/237 (54%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + L ++ E+ADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAENADIIAIQETKLSATG-PTKKHLEI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+YK W SS + GYAG + LY K VT+ G + + GR
Sbjct: 60 LTNLFPDYKNTWRSSQEPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DGFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDEQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PANNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|329895423|ref|ZP_08271004.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
gi|328922306|gb|EGG29652.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
Length = 256
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 130/224 (58%), Gaps = 5/224 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
++ SWNV G+RA KK+ + ++ D+ CLQETK + Q+ + P YK + S
Sbjct: 1 MRLVSWNVNGIRAVTKKDFFESFERMAPDVLCLQETKAQDDQVLEALTELDPAYKVFSNS 60
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G + T+V+P VT +G +++ GR + + + PN+G+ LK L
Sbjct: 61 AEKKGYSGTAIITRVEPISVTADMGMPEHDTEGRVLCAEFETFYLVTVYTPNSGSELKRL 120
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTIEERDSFS 250
D R WDK F ++L L+ KPV++ GDLNV+H+ IDLA P N +SAG+ E D F
Sbjct: 121 DYRQSWDKDFADYLKTLEQTKPVVVCGDLNVAHQDIDLARPKQNYNKSAGYMQAEIDGFD 180
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L+D GF D++RH P T Y++WSY + AR +N G +YF
Sbjct: 181 RLVDLGFVDTYRHFNPN-TAKYSWWSYRAG-AREKNIGWRIDYF 222
>gi|209558893|ref|YP_002285365.1| 3-exo-deoxyribonuclease [Streptococcus pyogenes NZ131]
gi|209540094|gb|ACI60670.1| Putative 3-exo-deoxyribonuclease [Streptococcus pyogenes NZ131]
Length = 303
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 135/250 (54%), Gaps = 28/250 (11%)
Query: 60 SCNKKNKLGEEPNFKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKC 110
S K+N++ K+ SWN+ L RA + + LD + +DADI +QETK
Sbjct: 22 SVRKRNQM------KLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKL 75
Query: 111 HETQLPPEVKMK-----FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGT 158
+ P + ++ FP Y W SS + GYAG K N V G T
Sbjct: 76 -SAKGPSKKHIEALLSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPT 134
Query: 159 KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIG 218
+ GR + F + PNAG GL+ LD R WD + ++L +LDA+KPV+ G
Sbjct: 135 TMDAEGRIITLEFEDFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATG 194
Query: 219 DLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYM 278
D NV+HK IDLANP++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+
Sbjct: 195 DYNVAHKEIDLANPSSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQR 254
Query: 279 SKTARSRNTG 288
SKT++ NTG
Sbjct: 255 SKTSKINNTG 264
>gi|375342925|gb|AFA54864.1| exodeoxyribonuclease III [uncultured Eggerthella sp. SMG5]
Length = 261
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 128/233 (54%), Gaps = 17/233 (7%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
++ SWNV GLRA +KK +D + DAD+F LQETK E Q ++M P Y +W
Sbjct: 1 MRLVSWNVNGLRAVMKKGFMDAFHELDADVFALQETKLQEGQ----IEMDLPGYHQFWSY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ + GY+G ++ K +P +V + +G + GR + + PNA + L L
Sbjct: 57 AERKGYSGTAVFCKEEPLRVIHEVGVPELDTEGRVVICEFEQYWLVNVYTPNAQSELARL 116
Query: 192 DKRLEWDKLFH------EHLVKLDAE----KPVILIGDLNVSHKPIDLANPTTNTRSAGF 241
D R+ WD F E V D + KPV++ GD NV+H+ IDL NP +N + GF
Sbjct: 117 DHRMAWDDRFRDICKGLEEGVLPDGQAGNAKPVVMCGDFNVAHQEIDLKNPRSNRGNPGF 176
Query: 242 TIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ EER F+ LLD GF D+FR+L P GAY++WSY AR+ N G +YF
Sbjct: 177 SDEERAKFTCLLDAGFIDTFRYLNPATEGAYSWWSYRFH-ARANNAGWRIDYF 228
>gi|32475225|ref|NP_868219.1| exodeoxyribonuclease [Rhodopirellula baltica SH 1]
gi|32445766|emb|CAD78497.1| exodeoxyribonuclease [Rhodopirellula baltica SH 1]
Length = 256
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 135/226 (59%), Gaps = 11/226 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE---YKTY 129
K+ SWNV G+RA + K ++++ E D+ CLQETK P +V + + + Y
Sbjct: 5 LKLISWNVNGIRASMDKGFREFVESEQPDVLCLQETKAE----PEQVDLSWADELGYHQV 60
Query: 130 WLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
W ++ K GY+GV +++V+P KVT GL + +++ GR + + + PN+ GL
Sbjct: 61 WNTATKRGYSGVSTWSRVEPLKVTKGLSIEEHDNEGRVLTTTFDDFHLVNVYTPNSQRGL 120
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
LD R++WD+ F +++ KL+ KPV+ GD+N +HK IDLANP N ++AGF+ +ER
Sbjct: 121 ARLDYRMQWDEAFLDYVKKLNRRKPVLFCGDVNCAHKEIDLANPKANRKNAGFSDQERAG 180
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ + GF DSFR + G Y++W+Y S AR+RN G +YF
Sbjct: 181 LDAVTEAGFIDSFRQFHDG-PGHYSWWTYRSD-ARARNIGWRLDYF 224
>gi|422882779|ref|ZP_16929235.1| exodeoxyribonuclease [Streptococcus sanguinis SK355]
gi|332358812|gb|EGJ36635.1| exodeoxyribonuclease [Streptococcus sanguinis SK355]
Length = 275
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 131/236 (55%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHET---QLPPEVK 120
K+ SWN+ L RA + + L ++ E+ADI +QETK T + E+
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQAVLQTLQAENADIIAIQETKLSATGPTKKHVEIL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
K FPEY+ W SS + GYAG + LY K +T+ G + + GR
Sbjct: 61 TKLFPEYENTWRSSQEPARKGYAGTMFLYKKELKPTITFPEIGAPSTMDVEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLANP
Sbjct: 121 GFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDEQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 ASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|417303374|ref|ZP_12090432.1| exodeoxyribonuclease III [Rhodopirellula baltica WH47]
gi|421610893|ref|ZP_16052058.1| exodeoxyribonuclease III [Rhodopirellula baltica SH28]
gi|440713979|ref|ZP_20894567.1| exodeoxyribonuclease III [Rhodopirellula baltica SWK14]
gi|327540346|gb|EGF26932.1| exodeoxyribonuclease III [Rhodopirellula baltica WH47]
gi|408498347|gb|EKK02841.1| exodeoxyribonuclease III [Rhodopirellula baltica SH28]
gi|436441175|gb|ELP34441.1| exodeoxyribonuclease III [Rhodopirellula baltica SWK14]
Length = 256
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 135/226 (59%), Gaps = 11/226 (4%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE---YKTY 129
K+ SWNV G+RA + K ++++ E D+ CLQETK P +V + + + Y
Sbjct: 5 LKLISWNVNGIRASMDKGFREFVESEQPDVLCLQETKAE----PEQVDLSWADELGYHQV 60
Query: 130 WLSSPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
W ++ K GY+GV +++V+P KVT GL + +++ GR + + + PN+ GL
Sbjct: 61 WNTATKRGYSGVSTWSRVEPLKVTKGLSIEEHDNEGRVLTTTFDDFHLVNVYTPNSQRGL 120
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
LD R++WD+ F +++ KL+ KPV+ GD+N +HK IDLANP N ++AGF+ +ER
Sbjct: 121 ARLDYRMQWDEAFLDYVKKLNRRKPVLFCGDVNCAHKEIDLANPKANRKNAGFSDQERAG 180
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
++ + GF DSFR + G Y++W+Y S AR+RN G +YF
Sbjct: 181 LDAVTEAGFIDSFRQFHDG-PGHYSWWTYRSD-ARARNIGWRLDYF 224
>gi|55821526|ref|YP_139968.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
gi|55737511|gb|AAV61153.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
Length = 275
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 136/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTGDSARAQLSRAVIDTLVTENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYVITWRSSVEPARKGYAGTMFLYKKELTPVITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK L +R WDK + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DTFFVTQVYTPNAGDGLKRLLERQIWDKKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL+KGF D++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERAGFTNLLNKGFIDTYRHLNGDVTGAYTWWAQRSKTSKINNTG 236
>gi|332637180|ref|ZP_08416043.1| exodeoxyribonuclease III [Weissella cibaria KACC 11862]
Length = 276
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 127/233 (54%), Gaps = 17/233 (7%)
Query: 73 FKIASWNVAGLRACVKKEG---------LDYIKKEDADIFCLQETKCHETQL----PPEV 119
K SWN+ + A V+ + L I E D+ +QETK T L +
Sbjct: 1 MKFISWNIDSVNAAVEHKSARGEMTWQVLQDIAAEQPDVLAIQETKLKATGLTKKQATAL 60
Query: 120 KMKFPEYKTYW-LSSPKAGYAGVGLYTKVKPNKV---TYGLGTKNEHYGRNCNSNIVNTF 175
FP Y Y +S+ ++GY+G + +KV+P V G + + GR NT+
Sbjct: 61 DELFPGYHRYLRMSTGRSGYSGTMMLSKVEPIAVEMPVIGAPDEMDIEGRIITLEFENTY 120
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN 235
PN+G+ L L R WD + ++ LDA+KPVI GD NV+H+ IDL NP TN
Sbjct: 121 VSTVYTPNSGSNLDRLTDRQAWDDAYRAYIADLDAKKPVIFSGDFNVAHQEIDLKNPKTN 180
Query: 236 TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+SAGFT EER+ F LLD GFTD+FR+L P +TG YT+W+ +SKT++ N+G
Sbjct: 181 HKSAGFTDEEREKFGLLLDAGFTDTFRYLNPDQTGVYTWWAQISKTSKINNSG 233
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 126/223 (56%), Gaps = 5/223 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRA + K D + + D+ CLQE K Q+ +P W
Sbjct: 1 MKLVSWNVNGLRAVLGKGMADAVDALEPDVLCLQEIKARPEQVKDLWISSWPH--QLWNP 58
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ KAGY+GV + ++V+P + G+G +++ GR C + + PN+ L L
Sbjct: 59 AEKAGYSGVLILSRVRPLSTSVGIGWPEHDREGRVCTMEFEGFYLVNCYTPNSQNELVRL 118
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
R +WD F E++ L KPV+ GDLNV+H+ ID+A P N SAGF+ +ER F+
Sbjct: 119 PYREQWDAAFREYVAGLAETKPVVFCGDLNVAHEEIDIARPKENRFSAGFSDQERAGFTL 178
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL+ GFTD+FR L+P+ G Y++WSY + AR+RN G +YF
Sbjct: 179 LLEAGFTDTFRALHPEEPGWYSWWSYRAG-ARARNIGWRIDYF 220
>gi|160945969|ref|ZP_02093195.1| hypothetical protein FAEPRAM212_03502 [Faecalibacterium prausnitzii
M21/2]
gi|158443700|gb|EDP20705.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii M21/2]
gi|295103228|emb|CBL00772.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii SL3/3]
Length = 250
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 123/223 (55%), Gaps = 8/223 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV GLRAC+ + DADIF +QETK P + Y Y S
Sbjct: 1 MKLISWNVNGLRACLTHGFAESFAALDADIFSVQETKMQ----PGQADFAPEGYTEYTYS 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G + K P VT G+G +++H GR + + PN+ GLK L
Sbjct: 57 AEKKGYSGTACWCKTAPLAVTTGIGLEQHDHEGRVLTLEYPGFYLVNCYTPNSQDGLKRL 116
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+EW+ F +L+ LDA+KPVIL GDLNV+H +D+ N TN SAGFT +ER +
Sbjct: 117 DYRMEWEDAFRAYLLALDAKKPVILCGDLNVAHTEMDIKNAKTNRMSAGFTDQERAKMTE 176
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LL GF DSFR ++P Y++WSY AR +N G +YF
Sbjct: 177 LLAAGFADSFRVVHPDEV-KYSWWSYRFH-AREKNAGWRIDYF 217
>gi|241895249|ref|ZP_04782545.1| exodeoxyribonuclease III [Weissella paramesenteroides ATCC 33313]
gi|241871555|gb|EER75306.1| exodeoxyribonuclease III [Weissella paramesenteroides ATCC 33313]
Length = 289
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 135/252 (53%), Gaps = 23/252 (9%)
Query: 54 LNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKK---------EGLDYIKKEDADIFC 104
+NK D+S K+ K SWN+ + A V+ E L I E D+
Sbjct: 1 MNKNDFSKRNGGKM------KFISWNIDSINAAVEHKSVRGVMTWEVLQQIALEKPDVLA 54
Query: 105 LQETKCHETQLPPEVKMK----FPEYKTYW-LSSPKAGYAGVGLYTKVKPNKVTY---GL 156
+QETK T L + + FP Y Y +S+ ++GY+G + T+ +P VT G
Sbjct: 55 IQETKLKATGLTKKQETALDELFPNYYRYLRMSTGRSGYSGTMMLTRHEPISVTMPEIGA 114
Query: 157 GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVIL 216
+ + GR N + PN+G+GL L+ R WD + ++ LDA KPVI
Sbjct: 115 PGEMDIEGRIITLEFENNYVSTVYTPNSGSGLARLEDRQAWDDAYRAYVQTLDATKPVIF 174
Query: 217 IGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWS 276
GD NV+H+ IDL NP +N + AGFT EER+ FS LLD GFTD FR+L+P + G YT+W+
Sbjct: 175 SGDFNVAHQEIDLKNPKSNHKKAGFTNEEREHFSQLLDAGFTDIFRYLHPDQAGVYTWWA 234
Query: 277 YMSKTARSRNTG 288
+SKT++ N+G
Sbjct: 235 QISKTSKINNSG 246
>gi|22537705|ref|NP_688556.1| exodeoxyribonuclease [Streptococcus agalactiae 2603V/R]
gi|76788417|ref|YP_330186.1| exodeoxyribonuclease III [Streptococcus agalactiae A909]
gi|76799526|ref|ZP_00781659.1| exodeoxyribonuclease III [Streptococcus agalactiae 18RS21]
gi|77408314|ref|ZP_00785056.1| exodeoxyribonuclease III [Streptococcus agalactiae COH1]
gi|406709949|ref|YP_006764675.1| exodeoxyribonuclease [Streptococcus agalactiae GD201008-001]
gi|421146511|ref|ZP_15606223.1| exodeoxyribonuclease III [Streptococcus agalactiae GB00112]
gi|424048989|ref|ZP_17786540.1| exodeoxyribonuclease III [Streptococcus agalactiae ZQ0910]
gi|22534594|gb|AAN00429.1|AE014263_8 exodeoxyribonuclease [Streptococcus agalactiae 2603V/R]
gi|76563474|gb|ABA46058.1| exodeoxyribonuclease III [Streptococcus agalactiae A909]
gi|76585123|gb|EAO61748.1| exodeoxyribonuclease III [Streptococcus agalactiae 18RS21]
gi|77173077|gb|EAO76204.1| exodeoxyribonuclease III [Streptococcus agalactiae COH1]
gi|389649549|gb|EIM71027.1| exodeoxyribonuclease III [Streptococcus agalactiae ZQ0910]
gi|401686864|gb|EJS82832.1| exodeoxyribonuclease III [Streptococcus agalactiae GB00112]
gi|406650834|gb|AFS46235.1| exodeoxyribonuclease [Streptococcus agalactiae GD201008-001]
Length = 275
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 135/236 (57%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV- 119
K+ SWN+ L RA + ++ +D + EDADI +QETK T+ EV
Sbjct: 1 MKLISWNIDSLNAALTSESTRALMSRQVIDTLVAEDADIIAIQETKLSAKGPTKKHLEVL 60
Query: 120 KMKFPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FPEY W SS + GYAG + LY K V++ T ++ GR +
Sbjct: 61 ETYFPEYDLVWRSSVEPARKGYAGTMFLYRKGLNPIVSFPEIDAPTTMDNEGRIITLELE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
N + + PNAG GLK L R WD + E+L LD++KPV+ GD NV+HK IDLANP
Sbjct: 121 NCYITQVYTPNAGDGLKRLADRQIWDIKYAEYLATLDSQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RSAGFT EER F++LL KGFTD+FR+L+ Y++W+ S+T++ NTG
Sbjct: 181 SSNRRSAGFTAEERQGFTNLLAKGFTDTFRYLHGDVPNVYSWWAQRSRTSKINNTG 236
>gi|387879199|ref|YP_006309502.1| exodeoxyribonuclease III [Streptococcus parasanguinis FW213]
gi|386792653|gb|AFJ25688.1| exodeoxyribonuclease III [Streptococcus parasanguinis FW213]
Length = 282
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 134/236 (56%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + +E L + EDADI +QETK T+ E+
Sbjct: 8 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAEDADIIAIQETKLSAKGPTKKHLEIL 67
Query: 121 MK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP+Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 68 EELFPQYENTWRSSQEPARKGYAGTMFLYKKELTPVVTFPEIGAPSTMDLEGRIITLEFD 127
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GLK L +R WD + E+L +LD EKPV+ GD NV+HK IDLANP
Sbjct: 128 HFFVTQVYTPNAGDGLKRLAERQVWDVKYAEYLAELDKEKPVLATGDYNVAHKEIDLANP 187
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER+ F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 188 ASNRRSPGFTDEEREGFTNLLAKGFTDTFRHLHGDVPERYTWWAQRSKTSKINNTG 243
>gi|58337957|ref|YP_194542.1| exodeoxyribonuclease [Lactobacillus acidophilus NCFM]
gi|227902875|ref|ZP_04020680.1| exodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796]
gi|58255274|gb|AAV43511.1| exodeoxyribonuclease [Lactobacillus acidophilus NCFM]
gi|227869391|gb|EEJ76812.1| exodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796]
Length = 253
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 119/216 (55%), Gaps = 7/216 (3%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K SWNV G R C++ LD D DIF +Q+T+ P EVK+ EY YW S
Sbjct: 2 KFVSWNVNGFRRCLRHGFLDTFLDLDPDIFGMQDTRLS----PKEVKIDLTEYYQYWNFS 57
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGT-KNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
+ Y G ++TK+KP V G+G + + GR +Y+ P AG L+ LD
Sbjct: 58 EEKRYDGAAVFTKIKPLAVYNGIGIPEFDREGRTITLEFPKFYYVNTFAPYAGEQLQRLD 117
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
R+ W + F ++ KL KPVI+ GD++V+H IDLA P N AGFT +ER F+ L
Sbjct: 118 FRVMWAQAFRNYVTKLANNKPVIIGGDMSVAHDEIDLAEPEKNKNHAGFTGDERKEFTEL 177
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L+ GF D+FR L+PK AYTYWS AR +N G
Sbjct: 178 LNAGFEDTFRTLHPKDE-AYTYWS-RHDNARDKNIG 211
>gi|125718506|ref|YP_001035639.1| exodeoxyribonuclease [Streptococcus sanguinis SK36]
gi|125498423|gb|ABN45089.1| Exodeoxyribonuclease, putative [Streptococcus sanguinis SK36]
Length = 322
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 131/236 (55%), Gaps = 22/236 (9%)
Query: 74 KIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK-- 122
K+ SWN+ L RA + + L ++ E+ADI +QETK T P + ++
Sbjct: 49 KLISWNIDSLNAALTSDSARAQLSQAVLQTLQAENADIIAIQETKLSATG-PTKKHLEIL 107
Query: 123 ---FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
FPEY+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 108 TNLFPEYENTWRSSQEPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITLEFD 167
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLANP
Sbjct: 168 GFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDEQKPVLATGDYNVAHKEIDLANP 227
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 228 ASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 283
>gi|340399408|ref|YP_004728433.1| exodeoxyribonuclease [Streptococcus salivarius CCHSS3]
gi|338743401|emb|CCB93909.1| exodeoxyribonuclease [Streptococcus salivarius CCHSS3]
Length = 275
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 136/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + + + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRAVIHTLVAENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYDNTWRSSVEPARKGYAGTMFLYKKELTPIITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
N F + PNAG GLK L +R WD+ + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DNFFVTQVYTPNAGDGLKRLLERQIWDEKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL KGFTD++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERAGFTNLLAKGFTDTYRHLNGDITGAYTWWAQRSKTSKINNTG 236
>gi|422823073|ref|ZP_16871261.1| exodeoxyribonuclease [Streptococcus sanguinis SK405]
gi|422826846|ref|ZP_16875025.1| exodeoxyribonuclease [Streptococcus sanguinis SK678]
gi|422855017|ref|ZP_16901675.1| exodeoxyribonuclease [Streptococcus sanguinis SK1]
gi|324993723|gb|EGC25642.1| exodeoxyribonuclease [Streptococcus sanguinis SK405]
gi|324994964|gb|EGC26877.1| exodeoxyribonuclease [Streptococcus sanguinis SK678]
gi|327462994|gb|EGF09315.1| exodeoxyribonuclease [Streptococcus sanguinis SK1]
Length = 275
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 131/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + L ++ E+ADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQAVLQTLQAENADIIAIQETKLSATG-PTKKHLEI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 60 LTNLFPDYENTWRSSQEPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DGFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDQQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|417857434|ref|ZP_12502493.1| exodeoxyribonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
gi|387934389|gb|EIK42502.1| exodeoxyribonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
Length = 275
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 128/236 (54%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIETL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRIITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 SSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKINNTG 236
>gi|94987973|ref|YP_596074.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS9429]
gi|94991856|ref|YP_599955.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS2096]
gi|94541481|gb|ABF31530.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS9429]
gi|94545364|gb|ABF35411.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS2096]
Length = 303
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 128/237 (54%), Gaps = 20/237 (8%)
Query: 72 NFKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV 119
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 28 QMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIET 87
Query: 120 KMK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNI 171
+ FP Y W SS + GYAG K N V G T + GR
Sbjct: 88 LLSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRIITLEF 147
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 148 EDFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLAN 207
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 208 PSSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKINNTG 264
>gi|422758386|ref|ZP_16812148.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411221|gb|EFY02129.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 275
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 129/236 (54%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRTVLDTLVAQDADIIAIQETKLSAKGPTKKHVESL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP+Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPDYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRMITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ L+ R WD+ + ++L +LDA+KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLEDRQIWDQKYADYLAELDAQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 GSNRRSPGFTDEERQGFTNLLAKGFTDTFRHLHGDIPNVYTWWAQRSKTSKINNTG 236
>gi|139474328|ref|YP_001129044.1| exodeoxyribonuclease [Streptococcus pyogenes str. Manfredo]
gi|134272575|emb|CAM30841.1| exodeoxyribonuclease [Streptococcus pyogenes str. Manfredo]
Length = 275
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 128/236 (54%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIEAL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRIITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 SSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKINNTG 236
>gi|257789897|ref|YP_003180503.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|317489355|ref|ZP_07947868.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325832619|ref|ZP_08165417.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
gi|257473794|gb|ACV54114.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|316911526|gb|EFV33122.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325485940|gb|EGC88400.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
Length = 285
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 128/257 (49%), Gaps = 41/257 (15%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
+ SWNV GLRA +KK D + + DADI LQETK E Q + P+Y+ YW
Sbjct: 1 MRFVSWNVNGLRAVLKKGFEDIVCELDADIVALQETKLQEGQ----ATLDLPQYREYWSY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++ K +P + +GLG + + GR +++ PNA L +
Sbjct: 57 AEKKGYSGTAIFCKEQPLQALHGLGFPHLDTEGRIVALEFPKFWFVDVYTPNAQNELARI 116
Query: 192 DKRLEWDKLFHEHLVKLDA----------------------------------EKPVILI 217
D R+EWD F + L+ KPV++
Sbjct: 117 DHRMEWDDAFRDFCKGLEEGVLPAGVPVERPALGEGHVAISELPLTQPGETADPKPVVMC 176
Query: 218 GDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSY 277
GD NV+H+ IDL NP N AGF+ EER F+ LL+ GF DSFRHL+P TGAY++WSY
Sbjct: 177 GDFNVAHQEIDLKNPGPNRGKAGFSDEERGKFTDLLEVGFVDSFRHLHPDVTGAYSWWSY 236
Query: 278 MSKTARSRNTGC-TNYF 293
K AR N G +YF
Sbjct: 237 RFK-ARQTNAGWRIDYF 252
>gi|25011656|ref|NP_736051.1| hypothetical protein gbs1616 [Streptococcus agalactiae NEM316]
gi|77413444|ref|ZP_00789636.1| exodeoxyribonuclease III [Streptococcus agalactiae 515]
gi|24413196|emb|CAD47275.1| Unknown [Streptococcus agalactiae NEM316]
gi|77160538|gb|EAO71657.1| exodeoxyribonuclease III [Streptococcus agalactiae 515]
Length = 275
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 135/236 (57%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV- 119
K+ SWN+ L RA + ++ +D + EDADI +QETK T+ EV
Sbjct: 1 MKLISWNIDSLNAALTSESTRALMSRQVIDTLVAEDADIIAIQETKLSAKGPTKKHLEVL 60
Query: 120 KMKFPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FPEY W SS + GYAG + LY K V++ T ++ GR +
Sbjct: 61 ETYFPEYDLVWRSSVEPARKGYAGTMFLYRKGLNPIVSFPEIDAPTTMDNEGRIITLELE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
N + + PNAG GLK L R WD + E+L LD++KPV+ GD NV+HK IDLANP
Sbjct: 121 NCYITQVYTPNAGDGLKRLGDRQIWDIKYAEYLATLDSQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RSAGFT EER F++LL KGFTD+FR+L+ Y++W+ S+T++ NTG
Sbjct: 181 SSNRRSAGFTDEERQGFTNLLAKGFTDTFRYLHGDVPNVYSWWAQRSRTSKINNTG 236
>gi|227432019|ref|ZP_03914038.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352217|gb|EEJ42424.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 285
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 132/241 (54%), Gaps = 18/241 (7%)
Query: 65 NKLGEEPNFKIASWNVAGLRACVKKEG---------LDYIKKEDADIFCLQETKCHETQL 115
N G+E N K SWN+ + A V+ + L+ I D+F +QETK T L
Sbjct: 7 NSQGDE-NLKFISWNIDSINAAVEHKSVRGEMTWSTLNEIATIRPDVFAIQETKLKSTGL 65
Query: 116 ----PPEVKMKFPEYKTYWLSS-PKAGYAGVGLYTKVKPNKVTY---GLGTKNEHYGRNC 167
+ FPEY Y SS ++GY+G + +KV+P +V Y G + GR
Sbjct: 66 TKKQATAIAELFPEYHLYVNSSTARSGYSGTMVLSKVEPIQVEYPTIGAPGPMDLEGRII 125
Query: 168 NSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPI 227
F PN+G+ L L +R EWD + E++ +LDA KPVI GD+NV+H+ I
Sbjct: 126 TLEFPTFFLSTVYTPNSGSSLIRLPERGEWDDKYREYIKRLDATKPVIFSGDMNVAHQEI 185
Query: 228 DLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNT 287
DL NP N SAGFT +ER+ FS+LLD GFTD+FR L P YT+W+ +SKT++ N+
Sbjct: 186 DLKNPKPNRHSAGFTDQEREKFSALLDAGFTDTFRSLNPDTPSVYTWWAQISKTSKINNS 245
Query: 288 G 288
G
Sbjct: 246 G 246
>gi|333905554|ref|YP_004479425.1| 3'-exo-deoxyribonuclease [Streptococcus parauberis KCTC 11537]
gi|333120819|gb|AEF25753.1| putative 3'-exo-deoxyribonuclease [Streptococcus parauberis KCTC
11537]
gi|456370383|gb|EMF49279.1| Exodeoxyribonuclease III [Streptococcus parauberis KRS-02109]
gi|457096021|gb|EMG26492.1| Exodeoxyribonuclease III [Streptococcus parauberis KRS-02083]
Length = 275
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 131/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D I +DADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVIDTIVNQDADIIAIQETKLSATG-PTKKHLEA 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FPEY W SS + GYAG + LY K VT+ G T + GR
Sbjct: 60 ILSYFPEYLHVWRSSVEPARKGYAGTMFLYKKELNPTVTFPEIGAPTTMDAEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ + + PNAG GLK L+ R WD + ++L +LD KPV+ GD NV+H IDLAN
Sbjct: 120 EDFYVTQVYTPNAGDGLKRLEDRQAWDIQYADYLAELDKTKPVLATGDYNVAHHEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RSAGFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSAGFTDEERLGFTNLLAKGFTDTFRHLHGDIPNVYTWWAQRSKTSKINNTG 236
>gi|224137778|ref|XP_002322649.1| predicted protein [Populus trichocarpa]
gi|222867279|gb|EEF04410.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 133/231 (57%), Gaps = 10/231 (4%)
Query: 72 NFKIASWNVAGLRACVKKEG---LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPE--Y 126
+ K+ SWNV GLRA +K EG L+ ++E+ D+ CLQETK ++ +K +
Sbjct: 166 SVKLMSWNVNGLRALLKFEGFSALELAQRENFDVLCLQETKLQASKDVDSIKQCLIDGYE 225
Query: 127 KTYW-LSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNA 184
++W S+ K GY+G + +++KP V YGLG + + GR + + + + VPN+
Sbjct: 226 NSFWTCSNAKLGYSGTAIVSRIKPLSVCYGLGIPDHDSEGRVVTAEFDSFYLVNTYVPNS 285
Query: 185 GAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTI 243
G GLK L R+ +WD ++ +L+ KPVIL GDLN +H+ ID+ NP N RSAGFT
Sbjct: 286 GDGLKRLSYRITQWDPSLSNYMKELEKSKPVILTGDLNCAHQEIDIFNPAGNKRSAGFTE 345
Query: 244 EERDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
EER SF S+ L KG D+FR +P G YTYW Y ++ +YF
Sbjct: 346 EERQSFGSNFLSKGLVDTFRKQHPNVVG-YTYWGYRHGGRKTNKGWRLDYF 395
>gi|77406522|ref|ZP_00783574.1| exodeoxyribonuclease III [Streptococcus agalactiae H36B]
gi|77411367|ref|ZP_00787714.1| exodeoxyribonuclease III [Streptococcus agalactiae CJB111]
gi|77162540|gb|EAO73504.1| exodeoxyribonuclease III [Streptococcus agalactiae CJB111]
gi|77174861|gb|EAO77678.1| exodeoxyribonuclease III [Streptococcus agalactiae H36B]
Length = 275
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 135/236 (57%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV- 119
K+ SWN+ L RA + ++ +D + EDADI +QETK T+ EV
Sbjct: 1 MKLISWNIDSLNAALTSESTRALMSRQVIDTLVAEDADIIAIQETKLSAKGPTKKHLEVL 60
Query: 120 KMKFPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FPEY W SS + GYAG + LY K V++ T ++ GR +
Sbjct: 61 ETYFPEYDLVWRSSVEPARKGYAGTMFLYRKGLNPIVSFPEIDAPTTMDNEGRIITLELE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
N + + PNAG GLK L R WD + E+L LD++KPV+ GD NV+HK IDLANP
Sbjct: 121 NCYITQVYTPNAGDGLKRLADRQIWDIKYAEYLATLDSQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RSAGFT EER F++LL KGFTD+FR+L+ Y++W+ S+T++ NTG
Sbjct: 181 SSNRRSAGFTDEERQGFTNLLAKGFTDTFRYLHGDVPNVYSWWAQRSRTSKINNTG 236
>gi|422848137|ref|ZP_16894813.1| exodeoxyribonuclease [Streptococcus sanguinis SK115]
gi|325690669|gb|EGD32670.1| exodeoxyribonuclease [Streptococcus sanguinis SK115]
Length = 275
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 131/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + L ++ E+ADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQAVLQTLQAENADIIAIQETKLSATG-PTKKHLEI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 60 LTNLFPDYENTWRSSQEPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DGFFVTQVYTPNAGDGLKRLDDRQVWDVKYAEYLATLDQQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|406672108|ref|ZP_11079342.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
gi|405579418|gb|EKB53524.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
Length = 275
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 137/243 (56%), Gaps = 23/243 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPE----- 118
K+ SWN+ L RA + + L + + D+ +QETK T+ P +
Sbjct: 1 MKLISWNIDSLNAALTSDSNRALMSRAVLRDLVELKPDVIAIQETKL-STKGPTKKHLEI 59
Query: 119 VKMKFPEYKTYWLSS---PKAGYAGVG-LYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
+K +FPEY+ W SS + GYAGV LY K +VTY G + GR +
Sbjct: 60 LKEQFPEYQLAWRSSCEPARKGYAGVMFLYKKSIDAQVTYPEIGGPALMDCEGRILTLEL 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F PNAG+ LK L R WD+ + ++LV+LD +KPVI +GD NV+H+ IDLAN
Sbjct: 120 EDLFLTNVYTPNAGSELKRLADRQIWDQKYADYLVELDQQKPVIAMGDFNVAHEEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-T 290
P +N SAGFT EER FS LL++GFTDSFRHL+ G YT+W+ KT++ N+G
Sbjct: 180 PASNHFSAGFTDEERQGFSRLLERGFTDSFRHLHGPVEGQYTWWAQRVKTSKINNSGWRI 239
Query: 291 NYF 293
+YF
Sbjct: 240 DYF 242
>gi|418018388|ref|ZP_12657944.1| 3'-exo-deoxyribonuclease ExoIII [Streptococcus salivarius M18]
gi|345527237|gb|EGX30548.1| 3'-exo-deoxyribonuclease ExoIII [Streptococcus salivarius M18]
Length = 275
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 136/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRAVIDTLVAENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYDNTWRSSVEPARKGYAGTMFLYKKELNPVITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK L +R WD+ + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DKFFVTQVYTPNAGDGLKRLLERQIWDEKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL KGFTD++RHL TG+YT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERAGFTNLLSKGFTDTYRHLNGDVTGSYTWWAQRSKTSKINNTG 236
>gi|149200232|ref|ZP_01877254.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
gi|149136674|gb|EDM25105.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
Length = 258
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 129/222 (58%), Gaps = 5/222 (2%)
Query: 74 KIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSS 133
K+ SWNV G+RA KK +D ++ DAD+ CLQETK H+ QL E+ + Y +YW S
Sbjct: 4 KLISWNVNGIRAVEKKGFVDLMQSWDADVICLQETKAHKEQLSDEL-INIGNYTSYWHSG 62
Query: 134 PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLD 192
K GY+ V +Y++++P +V GLG + + GR + + + PNA A LK +D
Sbjct: 63 EKKGYSSVAIYSRIEPIRVIEGLGIEEFDREGRVIIAEYSDFYLFGVYFPNAQAELKRID 122
Query: 193 KRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSL 252
RLE+ E L + ++K +L GD NV+HK IDL NP N ++ G++I+ER+
Sbjct: 123 YRLEFGDALIEQLKEKYSDKACVLCGDFNVAHKAIDLKNPKANEKNPGYSIQERNWMDKF 182
Query: 253 LDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
L G D+FR ++ + Y++WSY ARSRN G +YF
Sbjct: 183 LAAGHVDTFR-MFNQNPDEYSWWSYRG-GARSRNVGWRIDYF 222
>gi|422862002|ref|ZP_16908634.1| exodeoxyribonuclease [Streptococcus sanguinis SK408]
gi|422870386|ref|ZP_16916879.1| exodeoxyribonuclease [Streptococcus sanguinis SK1087]
gi|327474597|gb|EGF20002.1| exodeoxyribonuclease [Streptococcus sanguinis SK408]
gi|328946601|gb|EGG40739.1| exodeoxyribonuclease [Streptococcus sanguinis SK1087]
Length = 275
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 132/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + L ++ E+ADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAENADIIAIQETKLSATG-PTKKHLEI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 60 LTNLFPDYENTWRSSQEPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F + PNAG GLK L+ R WD + E+L LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DDFFVTQVYTPNAGDGLKRLEDRQVWDAKYAEYLATLDGQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPDQYTWWAQRSKTSKINNTG 236
>gi|116628238|ref|YP_820857.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMD-9]
gi|386087152|ref|YP_006003026.1| Exonuclease III [Streptococcus thermophilus ND03]
gi|387910253|ref|YP_006340559.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MN-ZLW-002]
gi|116101515|gb|ABJ66661.1| Exonuclease III [Streptococcus thermophilus LMD-9]
gi|312278865|gb|ADQ63522.1| Exonuclease III [Streptococcus thermophilus ND03]
gi|387575188|gb|AFJ83894.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MN-ZLW-002]
Length = 275
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 136/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + +D + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTGDSTRAQLSRAVIDTLVTENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYVITWRSSVEPARKGYAGTMFLYKKELTPVITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK L +R WD+ + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DTFFVTQVYTPNAGDGLKRLLERQIWDEKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL+KGF D++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERAGFTNLLNKGFIDTYRHLNGDVTGAYTWWAQRSKTSKINNTG 236
>gi|71910153|ref|YP_281703.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS5005]
gi|71852935|gb|AAZ50958.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS5005]
Length = 303
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 133/249 (53%), Gaps = 26/249 (10%)
Query: 60 SCNKKNKLGEEPNFKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKC 110
S K+N++ K+ SWN+ L RA + + LD + +DADI +QETK
Sbjct: 22 SVRKRNQM------KLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKL 75
Query: 111 HE---TQLPPEVKMK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTK 159
T+ E + FP Y W SS + GYAG K N V G T
Sbjct: 76 SAKGPTKKHIETLLSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTT 135
Query: 160 NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGD 219
+ GR + F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD
Sbjct: 136 MDAEGRIITLEFEDFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATGD 195
Query: 220 LNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMS 279
NV+HK IDLANP +N RS GFT EER F++LL +GFTD+FRH++ YT+W+ S
Sbjct: 196 YNVAHKEIDLANPNSNRRSPGFTDEERQGFTNLLARGFTDTFRHVHGDIPHVYTWWAQRS 255
Query: 280 KTARSRNTG 288
KT++ NTG
Sbjct: 256 KTSKINNTG 264
>gi|422857913|ref|ZP_16904563.1| exodeoxyribonuclease [Streptococcus sanguinis SK1057]
gi|327462087|gb|EGF08416.1| exodeoxyribonuclease [Streptococcus sanguinis SK1057]
Length = 322
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 133/239 (55%), Gaps = 23/239 (9%)
Query: 72 NF-KIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
NF K+ SWN+ L RA + + L ++ E+ADI +QETK T P + +
Sbjct: 46 NFMKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAENADIIAIQETKLSATG-PTKKHL 104
Query: 122 K-----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNS 169
+ FP+Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 105 EILTNLFPDYENTWRSSQEPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITL 164
Query: 170 NIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDL 229
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDL
Sbjct: 165 EFDGFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDGQKPVLATGDYNVAHKEIDL 224
Query: 230 ANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
ANP +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 225 ANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPDQYTWWAQRSKTSKINNTG 283
>gi|381395703|ref|ZP_09921398.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379328582|dbj|GAB56531.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 255
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 133/224 (59%), Gaps = 6/224 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RA VKK+ L + D D+ CLQETK + Q+ E Y + S
Sbjct: 1 MKLVSWNVNGIRAAVKKDFLQSLAAMDCDVLCLQETKAQDEQVI-EALCDLHGYHIFTNS 59
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G + T+V+P VT +G ++++ GR + + + + PN+G+ LK L
Sbjct: 60 AVKKGYSGTSVITRVEPIDVTKDIGISEHDQEGRVLCAEFSDFYLVTVYTPNSGSELKRL 119
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTIEERDSFS 250
R +WD F ++ L+A+KPV++ GDLN +HK +DLA P N +SAG+T +E D
Sbjct: 120 GYRGQWDADFLTYIKALEAKKPVVICGDLNAAHKDLDLARPKPNYNKSAGYTQQEIDGID 179
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+L+ GF DSFRH++P T Y++WSY + AR RN G +YF
Sbjct: 180 NLIAAGFIDSFRHVHPD-TVKYSWWSYRAG-ARERNVGWRIDYF 221
>gi|218281326|ref|ZP_03487814.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
gi|218217511|gb|EEC91049.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
Length = 249
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K SWNV G+RA +KK+ ++ + DADIFC+QETK Q+ EV + Y+ Y S
Sbjct: 1 MKCISWNVNGIRAVLKKDFVEILYALDADIFCIQETKAQPDQI--EVDCELYPYQ-YINS 57
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++ K +P + YG+ + ++ GR + + PN+G GLK L
Sbjct: 58 AQKKGYSGTMIFCKEEPLSIRYGMNMEEHDTEGRVITLEYPEYYVVTVYTPNSGDGLKRL 117
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
D R+EWDK F +L LD KPV+ GD NV+++ ID+ NP TN ++AGFT EER+SF
Sbjct: 118 DYRMEWDKAFSAYLKSLD--KPVMACGDFNVANEEIDIKNPKTNHKNAGFTDEERNSFKE 175
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
L F D++R LYP++ Y++WSY K AR +N G
Sbjct: 176 NLLAYFVDTYRSLYPEKV-EYSWWSYRFK-AREKNAG 210
>gi|417917517|ref|ZP_12561076.1| exodeoxyribonuclease III [Streptococcus parasanguinis SK236]
gi|342830154|gb|EGU64493.1| exodeoxyribonuclease III [Streptococcus parasanguinis SK236]
Length = 275
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 134/236 (56%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + +E L + EDADI +QETK T+ E+
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAEDADIIAIQETKLSAKGPTKKHLEIL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 61 EELFPGYENTWRSSQEPARKGYAGTMFLYKKGLTPVVTFPEIGAPSTMDLEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GLK L++R WD + E+L +LD EKPV+ GD NV+HK IDLANP
Sbjct: 121 HFFVTQVYTPNAGDGLKRLEERQVWDVKYAEYLAELDKEKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER+ F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 ASNRRSPGFTDEEREGFTNLLAKGFTDTFRHLHGDVPERYTWWAQRSKTSKINNTG 236
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 121/204 (59%), Gaps = 7/204 (3%)
Query: 92 LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNK 151
+D+ DAD+FC+QE+K + Q E F Y +W + K GY+GV +TK +P
Sbjct: 6 MDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCAIKKGYSGVVTFTKKEPLS 61
Query: 152 VTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDA 210
V+YG+ K ++ GR + + + PN+ L L R+ W+ F + L L+
Sbjct: 62 VSYGIDIKEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALEL 121
Query: 211 EKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTG 270
+KPVI+ GDLNV+H IDL NP TN ++AGF+ EER FS LL+ GF D+FR+ YP +
Sbjct: 122 KKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERKKFSELLNAGFIDTFRYFYPNKEK 181
Query: 271 AYTYWSYMSKTARSRNTGC-TNYF 293
AYT+WSYM + AR ++ G +YF
Sbjct: 182 AYTWWSYMQQ-ARDKDIGWRIDYF 204
>gi|413952189|gb|AFW84838.1| hypothetical protein ZEAMMB73_201373 [Zea mays]
Length = 530
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 130/230 (56%), Gaps = 11/230 (4%)
Query: 73 FKIASWNVAGLRACVKKEGL---DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KT 128
KI SWNV GL+A +K G ++ED D+ CLQETK E + Y +
Sbjct: 270 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLLDGYTNS 329
Query: 129 YWLSS-PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGA 186
+W S K GY+G + ++VKP + YGLG + ++ GR + + + VPN+G
Sbjct: 330 FWTCSVSKLGYSGTAIISRVKPLSIKYGLGISDHDTEGRVVTVEFDDFYLLTAYVPNSGD 389
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GLK L R+ EWD ++ +L+ KPVIL GDLN +H+ ID+ +P N RSAGFT EE
Sbjct: 390 GLKRLTYRVTEWDPSLGNYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTNEE 449
Query: 246 RDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+SF ++ L KGF D+FR +P AY+YW Y AR N G +YF
Sbjct: 450 RESFGTNFLSKGFVDTFRKQHPNVV-AYSYWGY-RHNARKTNKGWRLDYF 497
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 122/204 (59%), Gaps = 7/204 (3%)
Query: 92 LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNK 151
+D+ DAD+FC+QE+K + Q E F Y +W + K GY+GV +TK +P
Sbjct: 6 MDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCAIKKGYSGVVTFTKKEPLS 61
Query: 152 VTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDA 210
V+YG+ + ++ GR + + + PN+ L L R+ W+ F + L L+
Sbjct: 62 VSYGIDIEEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALEL 121
Query: 211 EKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTG 270
+KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ FS LL+ GF D+FR+ YP +
Sbjct: 122 KKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYPNKEK 181
Query: 271 AYTYWSYMSKTARSRNTGC-TNYF 293
AYT+WSYM + AR ++ G +YF
Sbjct: 182 AYTWWSYMQQ-ARDKDIGWRIDYF 204
>gi|422884627|ref|ZP_16931075.1| exodeoxyribonuclease [Streptococcus sanguinis SK49]
gi|332359057|gb|EGJ36878.1| exodeoxyribonuclease [Streptococcus sanguinis SK49]
Length = 275
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 131/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + L ++ E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAENADIIAIQETKLSASG-PTKKHLEI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 60 LTNLFPDYENTWRSSQEPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DGFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDEQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|357125452|ref|XP_003564408.1| PREDICTED: apurinic endonuclease-redox protein-like isoform 1
[Brachypodium distachyon]
Length = 516
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 131/230 (56%), Gaps = 11/230 (4%)
Query: 73 FKIASWNVAGLRACVKKEGL---DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KT 128
KI SWNV GL+A VK G + ++ED D+ CLQETK + + + Y +
Sbjct: 256 LKILSWNVNGLKALVKSRGFSVHELAQREDFDVLCLQETKMQDKDVEVIKESLLEGYTNS 315
Query: 129 YWLSS-PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGA 186
+W S K GY+G + ++VKP + YGLG + + GR + + + VPN+G
Sbjct: 316 FWTCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVVTVEFDDFYLLTAYVPNSGD 375
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL+ L R+ EWD ++ +L+ KPVIL GDLN +H+ ID+ +P N RSAGFT EE
Sbjct: 376 GLRRLTYRVTEWDPCLGNYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTKEE 435
Query: 246 RDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+SF ++ L KGF D+FR +P G Y+YW Y AR N G +YF
Sbjct: 436 RESFETNFLSKGFVDTFRKQHPDVVG-YSYWGY-RHNARKTNKGWRLDYF 483
>gi|422854785|ref|ZP_16901449.1| exodeoxyribonuclease [Streptococcus sanguinis SK160]
gi|422875883|ref|ZP_16922353.1| exodeoxyribonuclease [Streptococcus sanguinis SK1056]
gi|325696280|gb|EGD38171.1| exodeoxyribonuclease [Streptococcus sanguinis SK160]
gi|332362319|gb|EGJ40119.1| exodeoxyribonuclease [Streptococcus sanguinis SK1056]
Length = 322
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 133/239 (55%), Gaps = 23/239 (9%)
Query: 72 NF-KIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
NF K+ SWN+ L RA + + L ++ E+ADI +QETK T P + +
Sbjct: 46 NFMKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAENADIIAIQETKLSATG-PTKKHL 104
Query: 122 K-----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNS 169
+ FP+Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 105 EILTDLFPDYENTWRSSREPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITL 164
Query: 170 NIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDL 229
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDL
Sbjct: 165 EFDGFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDEQKPVLATGDYNVAHKEIDL 224
Query: 230 ANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
ANP +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 225 ANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 283
>gi|422851129|ref|ZP_16897799.1| exodeoxyribonuclease [Streptococcus sanguinis SK150]
gi|325694998|gb|EGD36902.1| exodeoxyribonuclease [Streptococcus sanguinis SK150]
Length = 275
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 131/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + L ++ E+ADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAENADIIAIQETKLSATG-PTKKHLEI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 60 LTNLFPDYENTWRSSQEPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DGFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLGTLDKQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|306827920|ref|ZP_07461187.1| exodeoxyribonuclease III [Streptococcus pyogenes ATCC 10782]
gi|304429839|gb|EFM32881.1| exodeoxyribonuclease III [Streptococcus pyogenes ATCC 10782]
Length = 275
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 127/236 (53%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIETL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPNYLHVWRSSVEPARKGYAGTMFLYKSTLNPVITFPEIGAPTTMDAEGRIITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ LD R WD + ++L +LD +KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDTQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 SSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKINNTG 236
>gi|357125454|ref|XP_003564409.1| PREDICTED: apurinic endonuclease-redox protein-like isoform 2
[Brachypodium distachyon]
Length = 493
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 131/230 (56%), Gaps = 11/230 (4%)
Query: 73 FKIASWNVAGLRACVKKEGL---DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KT 128
KI SWNV GL+A VK G + ++ED D+ CLQETK + + + Y +
Sbjct: 233 LKILSWNVNGLKALVKSRGFSVHELAQREDFDVLCLQETKMQDKDVEVIKESLLEGYTNS 292
Query: 129 YWLSS-PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGA 186
+W S K GY+G + ++VKP + YGLG + + GR + + + VPN+G
Sbjct: 293 FWTCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVVTVEFDDFYLLTAYVPNSGD 352
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GL+ L R+ EWD ++ +L+ KPVIL GDLN +H+ ID+ +P N RSAGFT EE
Sbjct: 353 GLRRLTYRVTEWDPCLGNYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTKEE 412
Query: 246 RDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+SF ++ L KGF D+FR +P G Y+YW Y AR N G +YF
Sbjct: 413 RESFETNFLSKGFVDTFRKQHPDVVG-YSYWGY-RHNARKTNKGWRLDYF 460
>gi|21909832|ref|NP_664100.1| 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS315]
gi|21904018|gb|AAM78903.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS315]
Length = 275
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 128/236 (54%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIEAL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRIITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RS GFT EER F++LL +GFTD+FRH++ YT+W+ SKT++ NTG
Sbjct: 181 SSNRRSPGFTDEERQGFTNLLARGFTDTFRHVHGDIPHVYTWWAQRSKTSKINNTG 236
>gi|440801517|gb|ELR22535.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 317
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 128/226 (56%), Gaps = 9/226 (3%)
Query: 73 FKIASWNVAGLRACVKKEGL-DYIKKEDADIFCLQETKCH-ETQLPPEVKMKFPEYKTYW 130
K+ SWN+ GL A KK L Y++ ED D+ C QETK T + + +P YW
Sbjct: 61 MKLISWNLNGLNAVHKKGHLVKYVRDEDPDVICFQETKTQTSTAIAQLLGNDYPH--EYW 118
Query: 131 -LSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGAGL 188
S K GYAG ++KVKP VTYG+G +++ GR + + + +PNAG L
Sbjct: 119 NHSVNKLGYAGTATFSKVKPVSVTYGIGIAEHDGEGRVITTEFDRFYLVNTYIPNAGQKL 178
Query: 189 KTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDS 248
+ L R EW+K F +L L+ KPV+ GDLNV+H ID+ANP TN ++AGFT EER
Sbjct: 179 ERLGYRQEWNKDFLAYLKNLEQTKPVVWCGDLNVAHHDIDIANPKTNQKTAGFTKEERRD 238
Query: 249 FSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
F LL+ GF D+FRH P +TYWS R++N G +YF
Sbjct: 239 FGQLLESGFVDTFRHQNPDLQ-QFTYWS-NRFNCRAKNLGWRLDYF 282
>gi|322389122|ref|ZP_08062685.1| exodeoxyribonuclease [Streptococcus parasanguinis ATCC 903]
gi|321144164|gb|EFX39579.1| exodeoxyribonuclease [Streptococcus parasanguinis ATCC 903]
Length = 282
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 133/236 (56%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + +E L + EDADI +QETK T+ E+
Sbjct: 8 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAEDADIIAIQETKLSAKGPTKKHLEIL 67
Query: 121 MK-FPEYKTYWLSSPKA---GYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP+Y+ W SS ++ GYAG + LY K VT+ G + + GR
Sbjct: 68 EELFPQYENTWRSSQESARKGYAGTMFLYKKELSPIVTFPEIGAPSTMDLEGRIITLEFD 127
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
F + PNAG GLK L +R WD + E+L LD EKPV+ GD NV+HK IDLANP
Sbjct: 128 GFFVTQVYTPNAGDGLKRLAERQVWDVKYAEYLADLDKEKPVLATGDYNVAHKEIDLANP 187
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER+ F++LL KGFTD+FRH++ YT+W+ SKT++ NTG
Sbjct: 188 ASNRRSPGFTDEEREGFTNLLAKGFTDTFRHVHGDVPERYTWWAQRSKTSKINNTG 243
>gi|386362202|ref|YP_006071533.1| exodeoxyribonuclease III [Streptococcus pyogenes Alab49]
gi|350276611|gb|AEQ23979.1| exodeoxyribonuclease III [Streptococcus pyogenes Alab49]
Length = 275
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 127/236 (53%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIETL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRIITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ LD R WD + ++L +LD +KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDTQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 SSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKINNTG 236
>gi|445381668|ref|ZP_21427102.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MTCC 5460]
gi|445394570|ref|ZP_21428836.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MTCC 5461]
gi|444748857|gb|ELW73805.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MTCC 5461]
gi|444748961|gb|ELW73903.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MTCC 5460]
Length = 275
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 136/237 (57%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + + + E+ADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRAVIGTLVAENADIIAIQETKL-SAKGPTKKHLQI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY K +TY G + + GR
Sbjct: 60 LEDYFPDYDNTWRSSVEPARKGYAGTMFLYKKELNPVITYPEIGAPSTMDCEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK L +R WD+ + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 120 DTFFVTQVYTPNAGDGLKRLLERQIWDEKYADYLAELDAQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL+KGFTD++RHL TGAYT+W+ SKT++ NTG
Sbjct: 180 PSSNRRSPGFTDEERAGFTNLLNKGFTDTYRHLNGDVTGAYTWWAQRSKTSKINNTG 236
>gi|421893268|ref|ZP_16323815.1| Exodeoxyribonuclease III [Streptococcus pyogenes NS88.2]
gi|379980990|emb|CCG27537.1| Exodeoxyribonuclease III [Streptococcus pyogenes NS88.2]
Length = 275
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 127/236 (53%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIEAL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRIITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ LD R WD + ++L +LD +KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDTQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 SSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKINNTG 236
>gi|357238481|ref|ZP_09125818.1| exodeoxyribonuclease III [Streptococcus ictaluri 707-05]
gi|356753204|gb|EHI70325.1| exodeoxyribonuclease III [Streptococcus ictaluri 707-05]
Length = 275
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 130/236 (55%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK TQ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVVQDADIIAIQETKLSAKGPTQKHLECL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP++ W SS + GYAG K + N + G T + GR
Sbjct: 61 LSYFPDHLHVWRSSVEPARKGYAGTMFLYKKELNPIITFPEIGAPTTMDAEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG L+ LD R WD+ + ++L +LDA+KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDALRRLDDRQIWDQKYADYLAQLDAQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RSAGFT EER F++LL++GFTD+FR ++ YT+W+ SKT++ NTG
Sbjct: 181 ASNRRSAGFTDEERQGFTNLLNRGFTDTFRFMHGHVPNVYTWWAQRSKTSKINNTG 236
>gi|408401144|ref|YP_006859107.1| putative 3'-exo-deoxyribonuclease [Streptococcus dysgalactiae
subsp. equisimilis RE378]
gi|407967372|dbj|BAM60610.1| putative 3'-exo-deoxyribonuclease [Streptococcus dysgalactiae
subsp. equisimilis RE378]
Length = 275
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 127/236 (53%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTRKHIETL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP+Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPDYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRIITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ LD R WD + ++L +LD +KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDTQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 GSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPNVYTWWAQRSKTSKINNTG 236
>gi|359482196|ref|XP_002274714.2| PREDICTED: apurinic endonuclease-redox protein-like [Vitis
vinifera]
Length = 479
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 131/234 (55%), Gaps = 9/234 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIK---KEDADIFCLQETKCHETQLPPEVKMKFP 124
G+ K+ SWNV GLR +K +G +K +ED D+ LQETK E + +
Sbjct: 214 GDAKFVKLMSWNVNGLRGLLKSKGFSALKLAQREDFDVLSLQETKLQEKDVEAIKQSVIE 273
Query: 125 EYK-TYWLSS-PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNV 181
Y+ ++W S K GY+G + +++KP V YGLG + ++ GR + + + + V
Sbjct: 274 GYENSFWTCSVSKLGYSGTAIISRIKPLSVRYGLGISDHDSEGRLLTAEFESFYLLSGYV 333
Query: 182 PNAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
PN+G GLK L R+ +WD ++ +L+ KPVIL GDLN +H+ ID+ +P N RSAG
Sbjct: 334 PNSGDGLKRLSYRVTQWDSALGSYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAG 393
Query: 241 FTIEERDSFS-SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
FT EER S + L KGF DSFR +P G YTYW Y + +S +YF
Sbjct: 394 FTDEERQSLEKNFLSKGFVDSFRKQHPGVVG-YTYWGYRNGCRKSNKGWRLDYF 446
>gi|417927917|ref|ZP_12571305.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|340765791|gb|EGR88317.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
Length = 275
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 127/236 (53%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIETL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP+Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPDYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRIITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ LD R WD + ++L +LD +KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDTQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 GSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPNVYTWWAQRSKTSKINNTG 236
>gi|356537505|ref|XP_003537267.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Glycine max]
Length = 543
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 128/221 (57%), Gaps = 12/221 (5%)
Query: 67 LGEEPNF-KIASWNVAGLRACVKKEG---LDYIKKEDADIFCLQETKCHETQLPPEVKMK 122
L ++ F K+ SWN GLRA +K EG L ++ED D+ CLQ TK E + E+K
Sbjct: 276 LAQDTKFVKLLSWNANGLRALLKLEGFSALQLAQREDFDVLCLQXTKLQEKDIE-EIKHH 334
Query: 123 FPE--YKTYW-LSSPKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIR 178
+ ++W S K GY+G + +++KP V YGLG + ++ GR + + I
Sbjct: 335 LIDGYDNSFWTFSVSKLGYSGTAIISRIKPLSVRYGLGISDHDSEGRLVTAEFDTFYLIC 394
Query: 179 KNVPNAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTR 237
VPN+G GLK L R+ EWD +L +L+ KPVIL GDLN +H+ ID+ NP N R
Sbjct: 395 GYVPNSGDGLKRLSYRVTEWDPSLSNYLKELEKSKPVILTGDLNCAHEEIDIYNPAGNKR 454
Query: 238 SAGFTIEERDSFSS-LLDKGFTDSFRHLYPKRTGAYTYWSY 277
SAG T EER SF++ L +GF D+FR +P G YTYW Y
Sbjct: 455 SAGLTDEERKSFATNFLSRGFVDTFRRQHPGVIG-YTYWGY 494
>gi|323351082|ref|ZP_08086739.1| exodeoxyribonuclease [Streptococcus sanguinis VMC66]
gi|422847206|ref|ZP_16893889.1| exodeoxyribonuclease [Streptococcus sanguinis SK72]
gi|322122806|gb|EFX94515.1| exodeoxyribonuclease [Streptococcus sanguinis VMC66]
gi|325687044|gb|EGD29067.1| exodeoxyribonuclease [Streptococcus sanguinis SK72]
Length = 275
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 131/237 (55%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + L ++ E+AD+ +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAENADVIAIQETKLSASG-PTKKHLEI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 60 LTNLFPDYENTWRSSQEPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DGFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDEQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|226529129|ref|NP_001146906.1| LOC100280514 [Zea mays]
gi|195604980|gb|ACG24320.1| apurinic endonuclease-redox protein [Zea mays]
Length = 510
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 129/230 (56%), Gaps = 11/230 (4%)
Query: 73 FKIASWNVAGLRACVKKEGL---DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KT 128
KI SWNV GL+A +K G ++ED D+ CLQETK E + Y +
Sbjct: 250 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLLDGYTNS 309
Query: 129 YWLSS-PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGA 186
+W S K GY+G + ++VKP + YGLG + + GR + + + VPN+G
Sbjct: 310 FWTCSVSKLGYSGTAIISRVKPLSIKYGLGIPDHDTEGRVVTVEFDDFYLLTAYVPNSGD 369
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GLK L R+ EWD ++ +L+ KPVIL GDLN +H+ ID+ +P N RSAGFT EE
Sbjct: 370 GLKRLTYRVTEWDPSLGNYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTNEE 429
Query: 246 RDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+SF ++ L KGF D+FR +P AY+YW Y AR N G +YF
Sbjct: 430 RESFGTNFLSKGFVDTFRKQHPNVV-AYSYWGY-RHNARKTNKGWRLDYF 477
>gi|94993733|ref|YP_601831.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS10750]
gi|94547241|gb|ABF37287.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS10750]
Length = 303
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 127/237 (53%), Gaps = 20/237 (8%)
Query: 72 NFKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV 119
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 28 QMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIET 87
Query: 120 KMK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNI 171
+ FP Y W SS + GYAG K N V G T + GR
Sbjct: 88 LLSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRIITLEF 147
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F + PNAG GL+ LD R WD + ++L +LD +KPV+ GD NV+HK IDLAN
Sbjct: 148 EDFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDTQKPVLATGDYNVAHKEIDLAN 207
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 208 PSSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKINNTG 264
>gi|295107237|emb|CBL04780.1| exodeoxyribonuclease III [Gordonibacter pamelaeae 7-10-1-b]
Length = 285
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 128/257 (49%), Gaps = 41/257 (15%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
+ SWNV GLRA KK D + + DADI LQETK E Q + P+Y+ YW
Sbjct: 1 MRFISWNVNGLRAVQKKGFEDIVCELDADIVALQETKLQEGQ----ATLDLPQYREYWSY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++TK +P +V +GLG+ + GR +++ PNA L +
Sbjct: 57 AEKKGYSGTAVFTKEQPLQVLHGLGSDYLDAEGRIVALEFPQFWFVDVYTPNAQNELARI 116
Query: 192 DKRLEWDKLFHEHLVKLD----------------------------------AEKPVILI 217
R+EWD F + L+ A KPV++
Sbjct: 117 AHRMEWDDAFRDFCKGLEEGVLPADVPVQRPAPGEGHVCISELPLTQPGETAAPKPVVMC 176
Query: 218 GDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSY 277
GD NV+H+ IDL NP N AGF+ EER F+ LL+ GF D+FR L+P TGAY++WSY
Sbjct: 177 GDFNVAHQEIDLKNPGPNRGKAGFSDEERGKFTDLLEAGFVDTFRRLHPDVTGAYSWWSY 236
Query: 278 MSKTARSRNTGC-TNYF 293
K AR N G +YF
Sbjct: 237 RFK-ARQNNAGWRIDYF 252
>gi|15674547|ref|NP_268721.1| 3'-exo-deoxyribonuclease [Streptococcus pyogenes SF370]
gi|410680027|ref|YP_006932429.1| exodeoxyribonuclease III [Streptococcus pyogenes A20]
gi|13621652|gb|AAK33442.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes M1 GAS]
gi|395453401|dbj|BAM29740.1| exodeoxyribonuclease III [Streptococcus pyogenes M1 476]
gi|409692616|gb|AFV37476.1| exodeoxyribonuclease III [Streptococcus pyogenes A20]
Length = 275
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 127/236 (53%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIETL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG K N V G T + GR
Sbjct: 61 LSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRIITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL +GFTD+FRH++ YT+W+ SKT++ NTG
Sbjct: 181 NSNRRSPGFTDEERQGFTNLLARGFTDTFRHVHGDIPHVYTWWAQRSKTSKINNTG 236
>gi|413952188|gb|AFW84837.1| hypothetical protein ZEAMMB73_201373 [Zea mays]
Length = 516
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 73 FKIASWNVAGLRACVKKEGL---DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KT 128
KI SWNV GL+A +K G ++ED D+ CLQETK E + Y +
Sbjct: 270 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLLDGYTNS 329
Query: 129 YWLSS-PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGA 186
+W S K GY+G + ++VKP + YGLG + ++ GR + + + VPN+G
Sbjct: 330 FWTCSVSKLGYSGTAIISRVKPLSIKYGLGISDHDTEGRVVTVEFDDFYLLTAYVPNSGD 389
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GLK L R+ EWD ++ +L+ KPVIL GDLN +H+ ID+ +P N RSAGFT EE
Sbjct: 390 GLKRLTYRVTEWDPSLGNYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTNEE 449
Query: 246 RDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSY 277
R+SF ++ L KGF D+FR +P AY+YW Y
Sbjct: 450 RESFGTNFLSKGFVDTFRKQHPNVV-AYSYWGY 481
>gi|195604738|gb|ACG24199.1| apurinic endonuclease-redox protein [Zea mays]
Length = 505
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 129/230 (56%), Gaps = 11/230 (4%)
Query: 73 FKIASWNVAGLRACVKKEGL---DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KT 128
KI SWNV GL+A +K G ++ED D+ CLQETK E + Y +
Sbjct: 245 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLLDGYTNS 304
Query: 129 YWLSS-PKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGA 186
+W S K GY+G + ++VKP + YGLG + + GR + + + VPN+G
Sbjct: 305 FWTCSVSKLGYSGTAIISRVKPLSIKYGLGIPDHDTEGRVVTVEFDDFYLLTAYVPNSGD 364
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GLK L R+ EWD ++ +L+ KPVIL GDLN +H+ ID+ +P N RSAGFT EE
Sbjct: 365 GLKRLTYRVTEWDPSLGNYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTNEE 424
Query: 246 RDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+SF ++ L KGF D+FR +P AY+YW Y AR N G +YF
Sbjct: 425 RESFGTNFLSKGFVDTFRKQHPNVV-AYSYWGY-RHNARKTNKGWRLDYF 472
>gi|28896473|ref|NP_802823.1| 3'-exo-deoxyribonuclease [Streptococcus pyogenes SSI-1]
gi|28811724|dbj|BAC64656.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes SSI-1]
Length = 313
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 128/237 (54%), Gaps = 20/237 (8%)
Query: 72 NFKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV 119
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 38 QMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIEA 97
Query: 120 KMK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNI 171
+ FP Y W SS + GYAG K N V G T + GR
Sbjct: 98 LLSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIGAPTTMDAEGRIITLEF 157
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 158 EDFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLAN 217
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL +GFTD+FRH++ YT+W+ SKT++ NTG
Sbjct: 218 PSSNRRSPGFTDEERQGFTNLLARGFTDTFRHVHGDIPHVYTWWAQRSKTSKINNTG 274
>gi|297739882|emb|CBI30064.3| unnamed protein product [Vitis vinifera]
Length = 542
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 131/234 (55%), Gaps = 9/234 (3%)
Query: 68 GEEPNFKIASWNVAGLRACVKKEGLDYIK---KEDADIFCLQETKCHETQLPPEVKMKFP 124
G+ K+ SWNV GLR +K +G +K +ED D+ LQETK E + +
Sbjct: 277 GDAKFVKLMSWNVNGLRGLLKSKGFSALKLAQREDFDVLSLQETKLQEKDVEAIKQSVIE 336
Query: 125 EYK-TYWLSS-PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNV 181
Y+ ++W S K GY+G + +++KP V YGLG + ++ GR + + + + V
Sbjct: 337 GYENSFWTCSVSKLGYSGTAIISRIKPLSVRYGLGISDHDSEGRLLTAEFESFYLLSGYV 396
Query: 182 PNAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
PN+G GLK L R+ +WD ++ +L+ KPVIL GDLN +H+ ID+ +P N RSAG
Sbjct: 397 PNSGDGLKRLSYRVTQWDSALGSYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAG 456
Query: 241 FTIEERDSFS-SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGCTNYF 293
FT EER S + L KGF DSFR +P G YTYW Y + +S +YF
Sbjct: 457 FTDEERQSLEKNFLSKGFVDSFRKQHPGVVG-YTYWGYRNGCRKSNKGWRLDYF 509
>gi|312867077|ref|ZP_07727287.1| exodeoxyribonuclease III [Streptococcus parasanguinis F0405]
gi|311097206|gb|EFQ55440.1| exodeoxyribonuclease III [Streptococcus parasanguinis F0405]
Length = 275
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 133/236 (56%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + +E L + EDADI +QETK T+ E+
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAEDADIIAIQETKLSAKGPTKKHLEIL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 61 EELFPGYEKTWRSSQEPARKGYAGTMFLYKKELTPVVTFPEIGAPSTMDLEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
F + PNAG GLK L++R WD + E+L +LD EKPV+ GD NV+HK IDLANP
Sbjct: 121 KFFVTQVYTPNAGDGLKRLEERQVWDVKYAEYLAELDKEKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER+ F++LL KGFTD+FRH++ YT+W+ SKT++ NTG
Sbjct: 181 ASNRRSPGFTDEEREGFTNLLAKGFTDTFRHVHGDVPERYTWWAQRSKTSKINNTG 236
>gi|196014285|ref|XP_002117002.1| hypothetical protein TRIADDRAFT_60990 [Trichoplax adhaerens]
gi|190580493|gb|EDV20576.1| hypothetical protein TRIADDRAFT_60990 [Trichoplax adhaerens]
Length = 281
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 125/223 (56%), Gaps = 40/223 (17%)
Query: 72 NFKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWL 131
N KI SWNV G++A KK G Y+ + DI CLQETKC E+++P E+K+ Y TY+
Sbjct: 65 NTKITSWNVNGIKAWFKKNGHSYLTDSNIDIICLQETKCAESEIPNEIKL--DGYHTYFY 122
Query: 132 SSPKAGYAGVGLYTKVKPNKVTYGLGTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
S+ + GY+ GL +KVKP KVT+G+ +NI+ R ++ + +
Sbjct: 123 SAEQKGYSSTGLLSKVKPLKVTFGI------------TNIILHIKFRTDIEKHDKEGRVI 170
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSS 251
E+DK F L+G LANP TNT++AGFT EER+ F
Sbjct: 171 TA--EYDKFF--------------LVGAY--------LANPKTNTKTAGFTKEEREGFGK 206
Query: 252 LLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
LLD GF D+FRH YP +T AY++WSYMS ARS+N G +YF
Sbjct: 207 LLDCGFIDTFRHFYPNKTSAYSFWSYMS-NARSKNIGWRLDYF 248
>gi|212697551|ref|ZP_03305679.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
gi|212675454|gb|EEB35061.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
Length = 275
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 130/244 (53%), Gaps = 25/244 (10%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
KI SWN+ L RA + ++ LD I KEDADI CLQETK T P K K
Sbjct: 1 MKIISWNIDSLNAALTSDSNRAKMSRDVLDTIIKEDADIICLQETKLPRTG--PSKKHKE 58
Query: 123 -----FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKV----TYGLGTKNEHYGRNCNSN 170
FP+Y W+SS + YAG + K + + T + R
Sbjct: 59 ILESYFPQYNYAWISSQEPARKSYAGCLTFYKKEFEPIISYPTLDAPDTMDQEARLITLE 118
Query: 171 IVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLA 230
N + + PNAG+GL LD R WDK + +L KLD KPVI GD NV+HK IDL
Sbjct: 119 FENFYLTQVYTPNAGSGLSRLDLRQVWDKKYANYLEKLDQNKPVIACGDFNVAHKEIDLK 178
Query: 231 NPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC- 289
+P N +SAGFT EER F++LL+KGF D+FR+L+ G YT+W+ KT++ N+G
Sbjct: 179 HPENNHKSAGFTDEERSGFTNLLNKGFVDTFRYLHGDVEGKYTWWAQRVKTSKINNSGWR 238
Query: 290 TNYF 293
+YF
Sbjct: 239 IDYF 242
>gi|339446107|ref|YP_004712111.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
gi|338905859|dbj|BAK45710.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
Length = 285
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 127/257 (49%), Gaps = 41/257 (15%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
+ SWNV GLRA + K D + + DADI LQETK E Q + P+Y+ YW
Sbjct: 1 MRFISWNVNGLRAVLNKGFEDIVCEIDADIVALQETKLQEGQ----ATLDLPQYREYWSY 56
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G ++ K +P +V +GLG+ + GR +++ PNA L +
Sbjct: 57 AQKKGYSGTAVFCKEQPLQVLHGLGSDYLDAEGRIVALEFPGFWFVDVYTPNAQNELARI 116
Query: 192 DKRLEWDKLFHEHLVKLDA----------------------------------EKPVILI 217
R++WD F + L+ KPV++
Sbjct: 117 AHRMQWDDAFRDFCKGLEEGVLPAGVPVQRPAPGEGHVTISELPLTQPGESTDPKPVVMC 176
Query: 218 GDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSY 277
GD NV+H+ IDL NP N AGF+ EER F+ LLD GF DSFRHL+P TGAY++WSY
Sbjct: 177 GDFNVAHQEIDLKNPGPNRGKAGFSDEERGKFTDLLDAGFVDSFRHLHPDVTGAYSWWSY 236
Query: 278 MSKTARSRNTGC-TNYF 293
K AR N G +YF
Sbjct: 237 RFK-ARQTNAGWRIDYF 252
>gi|339301033|ref|ZP_08650157.1| exodeoxyribonuclease III [Streptococcus agalactiae ATCC 13813]
gi|417005953|ref|ZP_11944523.1| hypothetical protein FSLSAGS3026_09155 [Streptococcus agalactiae
FSL S3-026]
gi|319745559|gb|EFV97861.1| exodeoxyribonuclease III [Streptococcus agalactiae ATCC 13813]
gi|341576134|gb|EGS26545.1| hypothetical protein FSLSAGS3026_09155 [Streptococcus agalactiae
FSL S3-026]
Length = 275
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 134/236 (56%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV- 119
K+ SWN+ L RA + ++ +D + EDADI +QETK T+ EV
Sbjct: 1 MKLISWNIDSLNAALTSESTRALMSRQVIDTLVAEDADIIAIQETKLSAKGPTKKHLEVL 60
Query: 120 KMKFPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FPEY W SS + GYAG + LY K V++ T ++ GR +
Sbjct: 61 ETYFPEYDLVWRSSVEPARKGYAGTMFLYRKGLNPIVSFPEIDAPTTMDNEGRIITLELE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
N + + PNAG LK L R WD + E+L LD++KPV+ GD NV+HK IDLANP
Sbjct: 121 NCYITQVYTPNAGDALKRLGDRQIWDIKYAEYLATLDSQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RSAGFT EER F++LL KGFTD+FR+L+ Y++W+ S+T++ NTG
Sbjct: 181 SSNRRSAGFTDEERQGFTNLLAKGFTDTFRYLHGDVPNVYSWWAQRSRTSKINNTG 236
>gi|346311925|ref|ZP_08853923.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
gi|345899662|gb|EGX69501.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
Length = 277
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 129/240 (53%), Gaps = 24/240 (10%)
Query: 73 FKIASWNVAGLRACVKKE--GLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYW 130
+K+ASWNV GLRA +KK+ +D + + DAD+ LQETK E Q V++ P Y W
Sbjct: 10 WKLASWNVNGLRAVLKKDPSFIDIVHQLDADVIALQETKLQEGQ----VEIDLPGYHQVW 65
Query: 131 LSSPKAGYAGVGLYTKVKPNKVTY--------GLGTKNEHY------GRNCNSNIVNTFY 176
+ + GY+G ++T+V+P V + G G E GR C ++
Sbjct: 66 SYAQRKGYSGTAVFTRVEPLSVRHADSLLPFAGEGEAAELLAVAATEGRVCALEFDRFWF 125
Query: 177 IRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAE--KPVILIGDLNVSHKPIDLANPTT 234
+ PNA L +D R+ WD + L L+ E KPVI GD NV+H IDL NP +
Sbjct: 126 VDVYTPNAQNELARIDTRMAWDDAYRAFLKSLEDETGKPVITCGDFNVAHNEIDLKNPKS 185
Query: 235 NTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
N +AGF+ EER F+ LLD GFTD++R L P G Y++WSY AR N G +YF
Sbjct: 186 NRGNAGFSDEERSKFTELLDAGFTDTWRSLNPDVEGVYSWWSYRFN-ARKNNAGWRIDYF 244
>gi|219884049|gb|ACL52399.1| unknown [Zea mays]
Length = 493
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 130/230 (56%), Gaps = 11/230 (4%)
Query: 73 FKIASWNVAGLRACVKKEGL---DYIKKEDADIFCLQETKCHETQLPPEVKMKFPEY-KT 128
KI SWNV GL+A +K G ++ED D+ CLQETK E + Y +
Sbjct: 233 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLLDGYTNS 292
Query: 129 YWLSS-PKAGYAGVGLYTKVKPNKVTYGLG-TKNEHYGRNCNSNIVNTFYIRKNVPNAGA 186
+W S K GY+G + ++VKP + YGLG + ++ GR + + + VPN+G
Sbjct: 293 FWTCSVSKLGYSGTAIISRVKPLSIKYGLGISDHDTEGRVVTVEFDDFYLLTAYVPNSGD 352
Query: 187 GLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEE 245
GLK L R+ EWD ++ +L+ KPVIL GDLN +H+ ID+ +P + RSAGFT EE
Sbjct: 353 GLKRLTYRVTEWDPSLGNYMKELEKSKPVILTGDLNCAHQEIDIHDPAGDRRSAGFTNEE 412
Query: 246 RDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+SF ++ L KGF D+FR +P AY+YW Y AR N G +YF
Sbjct: 413 RESFGTNFLSKGFVDTFRKQHPNVV-AYSYWGY-RHNARKTNKGWRLDYF 460
>gi|392428342|ref|YP_006469353.1| exodeoxyribonuclease [Streptococcus intermedius JTH08]
gi|419777556|ref|ZP_14303467.1| exodeoxyribonuclease III [Streptococcus intermedius SK54]
gi|423070793|ref|ZP_17059569.1| exodeoxyribonuclease [Streptococcus intermedius F0413]
gi|424787315|ref|ZP_18214083.1| exodeoxyribonuclease III [Streptococcus intermedius BA1]
gi|355364887|gb|EHG12614.1| exodeoxyribonuclease [Streptococcus intermedius F0413]
gi|383844792|gb|EID82203.1| exodeoxyribonuclease III [Streptococcus intermedius SK54]
gi|391757488|dbj|BAM23105.1| exodeoxyribonuclease homolog [Streptococcus intermedius JTH08]
gi|422114078|gb|EKU17796.1| exodeoxyribonuclease III [Streptococcus intermedius BA1]
Length = 275
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 129/236 (54%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + L ++ E ADI +QETK T+ E+
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAEKADIIAIQETKLSAKGPTKKHLEIL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
FP+Y+ W SS + GYAG + LY K +T+ G + + GR
Sbjct: 61 TNLFPDYENTWRSSQEPARKGYAGTMFLYNKELTPTITFPEIGAPSTMDVEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
F + PNAG GLK LD R WD + E+L LD +KPV+ GD NV+HK IDLANP
Sbjct: 121 GFFVTQVYTPNAGDGLKRLDDRQVWDAKYAEYLATLDEQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 ASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|291536334|emb|CBL09446.1| exodeoxyribonuclease III [Roseburia intestinalis M50/1]
Length = 246
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 124/213 (58%), Gaps = 10/213 (4%)
Query: 86 CV---KKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVG 142
CV KK L + K FC+QE+K E Q + + P Y +YW + K GY+G
Sbjct: 5 CVPVSKKAFLIFFMKLMQIFFCIQESKLQEGQ----IDLPLPGYFSYWNYAKKKGYSGTA 60
Query: 143 LYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLF 201
++TK +P VTYG+G + ++ GR + + + PN+ L L R++W+ F
Sbjct: 61 IFTKKEPLNVTYGIGIEEHDKEGRVITLEYPDFYMVTCYTPNSQNELARLPYRMQWEDDF 120
Query: 202 HEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSF 261
+L +LD KPVIL GDLNV+H+ IDL NP TN ++AGF+ EER+ + LLD GFTD+F
Sbjct: 121 RAYLKRLDGSKPVILCGDLNVAHEEIDLKNPKTNRKNAGFSDEEREKMTKLLDAGFTDTF 180
Query: 262 RHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
R+ YP Y++WSY + AR +N G +YF
Sbjct: 181 RYFYPDTEQIYSWWSYRFR-AREKNAGWRIDYF 212
>gi|417936679|ref|ZP_12579986.1| exodeoxyribonuclease III [Streptococcus infantis X]
gi|343400195|gb|EGV12715.1| exodeoxyribonuclease III [Streptococcus infantis X]
Length = 275
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 133/237 (56%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + ++ L + EDADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSATG-PTKKHLEV 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP Y+ W SS + GYAG + LY K +++ G + + GR
Sbjct: 60 LEELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPTISFPEIGAPSTMDSEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK L++R WD + E+L +LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DTFFVTQVYTPNAGDGLKRLEERQVWDVKYAEYLAQLDKQKPVLATGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER+ F++LL KGFTD+FRH++ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEEREGFTNLLAKGFTDTFRHIHGDVPERYTWWAQRSKTSKINNTG 236
>gi|410594949|ref|YP_006951676.1| exodeoxyribonuclease [Streptococcus agalactiae SA20-06]
gi|421532739|ref|ZP_15979089.1| exodeoxyribonuclease III [Streptococcus agalactiae STIR-CD-17]
gi|403642016|gb|EJZ02915.1| exodeoxyribonuclease III [Streptococcus agalactiae STIR-CD-17]
gi|410518588|gb|AFV72732.1| Exodeoxyribonuclease [Streptococcus agalactiae SA20-06]
Length = 275
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 134/236 (56%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV- 119
K+ SWN+ L RA + ++ +D + EDADI +QETK T+ EV
Sbjct: 1 MKLISWNIDSLNAALTSESTRALMSRQVIDTLVAEDADIIAIQETKLSAKGPTKKHLEVL 60
Query: 120 KMKFPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG + LY K V++ T ++ GR +
Sbjct: 61 ETYFPAYDLVWRSSVEPARKGYAGTMFLYRKGLNPIVSFPEIDAPTTMDNEGRIITLELE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
N + + PNAG GLK L R WD + E+L LD++KPV+ GD NV+HK IDLANP
Sbjct: 121 NCYITQVYTPNAGDGLKRLADRQIWDIKYAEYLATLDSQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RSAGFT EER F++LL KGFTD+FR+L+ Y++W+ S+T++ NTG
Sbjct: 181 SSNRRSAGFTDEERQGFTNLLAKGFTDTFRYLHGDVPNVYSWWAQRSRTSKINNTG 236
>gi|325846697|ref|ZP_08169612.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481455|gb|EGC84496.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 275
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 130/244 (53%), Gaps = 25/244 (10%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
KI SWN+ L RA + ++ LD I KEDADI CLQETK T P K K
Sbjct: 1 MKIISWNIDSLNAALTSDSNRAKMSRDVLDTIIKEDADIICLQETKLPRTG--PSKKHKQ 58
Query: 123 -----FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKV----TYGLGTKNEHYGRNCNSN 170
FP+Y W+SS + YAG + K + + T + R
Sbjct: 59 ILESYFPQYNYAWISSQEPARKSYAGCLTFYKKEFEPIISYPTLDAPDTMDQEARIITLE 118
Query: 171 IVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLA 230
N + + PNAG+GL LD R WDK + +L KLD KPVI GD NV+HK IDL
Sbjct: 119 FDNFYLTQVYTPNAGSGLSRLDLRQVWDKKYANYLEKLDQNKPVIACGDFNVAHKEIDLK 178
Query: 231 NPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC- 289
+P N +SAGFT EER F++LL+KGF D+FR+L+ G YT+W+ KT++ N+G
Sbjct: 179 HPENNHKSAGFTDEERSGFTNLLNKGFVDTFRYLHGDVEGKYTWWAQRVKTSKINNSGWR 238
Query: 290 TNYF 293
+YF
Sbjct: 239 IDYF 242
>gi|341820798|emb|CCC57104.1| exodeoxyribonuclease III [Weissella thailandensis fsh4-2]
Length = 289
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 139/252 (55%), Gaps = 23/252 (9%)
Query: 54 LNKIDYSCNKKNKLGEEPNFKIASWNVAGLRACVKK---------EGLDYIKKEDADIFC 104
+ K D+S K+N G + NF SWN+ + A V+ E L I E D+
Sbjct: 1 MKKNDFS--KRN--GGKMNF--ISWNIDSINAAVEHKSVRGEMTWEVLQNIALERPDVLA 54
Query: 105 LQETKCHETQLPPEVKMK----FPEYKTYW-LSSPKAGYAGVGLYTKVKPNKV---TYGL 156
+QETK T L + + FP Y Y +S+ ++GY+G + T+ +P V G
Sbjct: 55 IQETKLKATGLTKKQETALDELFPNYYRYLRMSTGRSGYSGTMMLTRHEPLSVDMPVIGA 114
Query: 157 GTKNEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVIL 216
+ + GR N + PN+G+GL L R WD + ++ LDA+KPVI
Sbjct: 115 PGEMDIEGRVITLEFENNYVSTVYTPNSGSGLARLGDRQAWDDAYRAYIQTLDAKKPVIF 174
Query: 217 IGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWS 276
GD NV+H+ IDL NP +N ++AGFT EER FS LLD GFTD+FR+L+P +TG YT+W+
Sbjct: 175 SGDFNVAHQEIDLKNPKSNHKTAGFTDEERTHFSRLLDAGFTDTFRYLHPDQTGVYTWWA 234
Query: 277 YMSKTARSRNTG 288
+SKT++ N+G
Sbjct: 235 QISKTSKINNSG 246
>gi|312866373|ref|ZP_07726591.1| exodeoxyribonuclease III [Streptococcus downei F0415]
gi|311098067|gb|EFQ56293.1| exodeoxyribonuclease III [Streptococcus downei F0415]
Length = 276
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 136/238 (57%), Gaps = 23/238 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + ++ +D + ++DADI +QETK + P + +
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSRQVIDSLVEQDADIIAIQETKL-SAKGPTKKHLAL 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPN-KVTY---GLGTKNEHYGRNCNSN 170
FP+Y+ W SS + GYAG + LY P +TY + + GR
Sbjct: 60 LEDYFPDYQIAWRSSVEPARKGYAGTMFLYKNSLPEPTITYPEIDAPSTMDDEGRIITLE 119
Query: 171 IVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLA 230
F + PNAG GL+ L++R WD+ + ++LV LD +KPV+ GD NV+HK IDLA
Sbjct: 120 FDKFFVTQVYTPNAGDGLRRLEERQIWDQKYADYLVGLDQQKPVLASGDYNVAHKEIDLA 179
Query: 231 NPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
NPT+N RS GFT EER F++LLDKGFTD+FR+++ Y++W+ SKT++ NTG
Sbjct: 180 NPTSNRRSPGFTDEERQGFTNLLDKGFTDTFRYMHGDIPNVYSWWAQRSKTSKINNTG 237
>gi|50913711|ref|YP_059683.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS10394]
gi|50902785|gb|AAT86500.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS10394]
Length = 303
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 127/237 (53%), Gaps = 20/237 (8%)
Query: 72 NFKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV 119
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 28 QMKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIEA 87
Query: 120 KMK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNI 171
+ FP Y W SS + GYAG K N V T + GR
Sbjct: 88 LLSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFPEIDAPTTMDAEGRIITLEF 147
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F + PNAG GL+ LD R WD + ++L +LDA+KPV+ GD NV+HK IDLAN
Sbjct: 148 EDFFVTQVYTPNAGDGLRRLDDRQIWDHKYADYLTELDAQKPVLATGDYNVAHKEIDLAN 207
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EER F++LL +GFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 208 PSSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKINNTG 264
>gi|422864971|ref|ZP_16911596.1| exodeoxyribonuclease [Streptococcus sanguinis SK1058]
gi|422878263|ref|ZP_16924729.1| exodeoxyribonuclease [Streptococcus sanguinis SK1059]
gi|422928119|ref|ZP_16961061.1| exodeoxyribonuclease [Streptococcus sanguinis ATCC 29667]
gi|422931115|ref|ZP_16964046.1| exodeoxyribonuclease [Streptococcus sanguinis SK340]
gi|327490155|gb|EGF21943.1| exodeoxyribonuclease [Streptococcus sanguinis SK1058]
gi|332367237|gb|EGJ44972.1| exodeoxyribonuclease [Streptococcus sanguinis SK1059]
gi|339617264|gb|EGQ21890.1| exodeoxyribonuclease [Streptococcus sanguinis ATCC 29667]
gi|339620297|gb|EGQ24867.1| exodeoxyribonuclease [Streptococcus sanguinis SK340]
Length = 322
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 134/239 (56%), Gaps = 23/239 (9%)
Query: 72 NF-KIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKM 121
NF K+ SWN+ L RA + + L ++ E+ADI +QETK T P + +
Sbjct: 46 NFMKLISWNIDSLNAALTSDSARAQLSQAVLQTLQAENADIIAIQETKLSATG-PTKKHL 104
Query: 122 K-----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNS 169
+ FP+Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 105 EILTYLFPDYENTWRSSREPARKGYAGTMFLYKKELTPTVTFPEIGAPSTMDVEGRIITL 164
Query: 170 NIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDL 229
F + PNAG GLK L++R WD + E+L LD +KPV+ GD NV+HK IDL
Sbjct: 165 EFDGFFVTQVYTPNAGDGLKRLNERQVWDAKYAEYLASLDEQKPVLATGDYNVAHKEIDL 224
Query: 230 ANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
ANP +N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 225 ANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 283
>gi|450159907|ref|ZP_21879708.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
gi|449240671|gb|EMC39334.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
Length = 275
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 133/237 (56%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + + LD + ++DADI +QETK + P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARALLSRAVLDTLMEQDADILAIQETKL-SAKGPTKKHLRI 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP+Y W SS + GYAG + LY +TY G + GR
Sbjct: 60 LKDYFPDYDVVWRSSVEPARKGYAGTMFLYKSSLQPTITYPEIGAPATMDDEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
+ F + PNAG GLK LD R WD+ + +L +LD +KPV+ GD NV+HK IDLA+
Sbjct: 120 DDFFVTQVYTPNAGDGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDYNVAHKEIDLAH 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P++N RS GFT EERD F+ LL++GFTD+FR+++ Y++W+ SKT++ N+G
Sbjct: 180 PSSNRRSPGFTDEERDGFTHLLEQGFTDTFRYIHGDVPNVYSWWAQRSKTSKINNSG 236
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 122/204 (59%), Gaps = 7/204 (3%)
Query: 92 LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNK 151
+D+ DAD+FC+QE+K + Q E F Y +W + K GY+GV +TK +P
Sbjct: 6 MDFFNSVDADVFCIQESKMQQEQNTFE----FKGYFDFWNCAIKKGYSGVVTFTKKEPLS 61
Query: 152 VTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDA 210
V+YG+ + ++ GR + + + PN+ L L R+ W+ F + L L+
Sbjct: 62 VSYGIDMEEHDKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALEL 121
Query: 211 EKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTG 270
+KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ LL+ GF D+FR+ YP +
Sbjct: 122 KKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYPNKEK 181
Query: 271 AYTYWSYMSKTARSRNTGC-TNYF 293
AYT+WSYM + AR ++ G +YF
Sbjct: 182 AYTWWSYMQQ-ARDKDIGWRIDYF 204
>gi|420535388|ref|ZP_15033733.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|420539073|ref|ZP_15037392.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
gi|393139673|gb|EJC40047.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|393146758|gb|EJC47083.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
Length = 236
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 119/198 (60%), Gaps = 6/198 (3%)
Query: 92 LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLSSPKAGYAGVGLYTKVKPNK 151
+D+ +AD+FC+QE+K + Q E F Y +W + K GY+GV +TK +P
Sbjct: 6 MDFFNSVNADVFCIQESKMQQEQNTFE----FKGYFDFWNCAIKKGYSGVVTFTKKEPLS 61
Query: 152 VTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDA 210
V+YG+ K ++ GR + + + PN+ L L R+ W+ F + L L+
Sbjct: 62 VSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALEL 121
Query: 211 EKPVILIGDLNVSHKPIDLANPTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTG 270
+KPVI+ GDLNV+H IDL NP TN ++AGF+ EER+ F+ LL+ GF D+FR+ YP +
Sbjct: 122 KKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYPNKEK 181
Query: 271 AYTYWSYMSKTARSRNTG 288
AYT+WSYM + AR ++ G
Sbjct: 182 AYTWWSYMQQ-ARDKDIG 198
>gi|390629234|ref|ZP_10257230.1| Exodeoxyribonuclease III [Weissella confusa LBAE C39-2]
gi|390485436|emb|CCF29578.1| Exodeoxyribonuclease III [Weissella confusa LBAE C39-2]
Length = 276
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 124/233 (53%), Gaps = 17/233 (7%)
Query: 73 FKIASWNVAGLRACVKKEG---------LDYIKKEDADIFCLQETKCHETQL----PPEV 119
K SWN+ + A V+ + L I E D+ +QETK T L +
Sbjct: 1 MKFISWNIDSVNAAVEHKSARGEMTWQVLQDIAAEQPDVLAIQETKLKPTGLTKKQAAAL 60
Query: 120 KMKFPEYKTYW-LSSPKAGYAGVGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIVNTF 175
FP Y Y +S+ ++GY+G + +K +P V G + GR N +
Sbjct: 61 DELFPGYHRYLRISTGRSGYSGTMMLSKTEPIAVEMPEIGAPGDMDIEGRIITLEFPNVY 120
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN 235
PN+G+ L LD+R WD + ++ LDA+KPVI GD NV+H+ IDL NP TN
Sbjct: 121 VSTVYTPNSGSELARLDERQAWDDAYRAYVSGLDAKKPVIFSGDFNVAHQEIDLKNPKTN 180
Query: 236 TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+SAGFT EER FS+LLD GFTD FRHL P G YT+W+ +SKT++ N+G
Sbjct: 181 HKSAGFTDEERTKFSALLDAGFTDVFRHLNPDLAGVYTWWAQISKTSKINNSG 233
>gi|392330776|ref|ZP_10275391.1| exodeoxyribonuclease III [Streptococcus canis FSL Z3-227]
gi|391418455|gb|EIQ81267.1| exodeoxyribonuclease III [Streptococcus canis FSL Z3-227]
Length = 275
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 128/236 (54%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + LD + +DADI +QETK T+ E
Sbjct: 1 MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAKGPTKKHIETL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAGVGLYTKVKPNKVT----YGLGTKNEHYGRNCNSNIV 172
+ FP+Y W SS + GYAG K N V G T + GR
Sbjct: 61 LGYFPDYLHVWRSSVEPARKGYAGTMFLYKNTLNPVVTFPEIGAPTTMDAEGRIITLEFE 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
F + PNAG GL+ L+ R WD+ + ++L +LDA+KPV+ GD NV+HK IDLANP
Sbjct: 121 EFFVTQVYTPNAGDGLRRLEDRQIWDQKYADYLAELDAQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
++N RS GFT EER F++LL +GFTD+FR L+ YT+W+ SKT++ NTG
Sbjct: 181 SSNRRSPGFTDEERQGFTNLLARGFTDTFRQLHGDIPNVYTWWAQRSKTSKINNTG 236
>gi|385260230|ref|ZP_10038379.1| exodeoxyribonuclease III [Streptococcus sp. SK140]
gi|385192150|gb|EIF39560.1| exodeoxyribonuclease III [Streptococcus sp. SK140]
Length = 275
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 133/236 (56%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV- 119
K+ SWN+ L RA + ++ L + EDADI +QETK T+ EV
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSAKGPTKKHLEVL 60
Query: 120 KMKFPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
K FP Y+ W SS + GYAG + LY K V++ G + + GR
Sbjct: 61 KELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPTVSFPEIGAPSTMDLEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
F + PNAG GLK L++R WD + E+L +LD +KPV+ GD NV+HK IDLANP
Sbjct: 121 TFFVTQVYTPNAGDGLKRLEERQVWDVKYAEYLAELDKQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER+ F++LL KGFTD+FRH++ YT+W+ SKT++ NTG
Sbjct: 181 ASNRRSPGFTDEEREGFTNLLAKGFTDTFRHIHGDVPERYTWWAQRSKTSKINNTG 236
>gi|417937397|ref|ZP_12580697.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
gi|343391661|gb|EGV04234.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
Length = 275
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 133/237 (56%), Gaps = 22/237 (9%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMK- 122
K+ SWN+ L RA + ++ L + EDADI +QETK T P + ++
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQDVLQTLVAEDADIIAIQETKLSATG-PTKKHLEV 59
Query: 123 ----FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNI 171
FP Y+ W SS + GYAG + LY K +++ G + + GR
Sbjct: 60 LEELFPGYEHTWRSSQEPARKGYAGTMFLYKKELTPTISFPEIGAPSTMDSEGRIITLEF 119
Query: 172 VNTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLAN 231
F + PNAG GLK L++R WD + E+L +LD +KPV+ GD NV+HK IDLAN
Sbjct: 120 DTFFVTQVYTPNAGDGLKRLEERQVWDVKYAEYLAQLDKQKPVLSTGDYNVAHKEIDLAN 179
Query: 232 PTTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
P +N RS GFT EER+ F++LL KGFTD+FRH++ YT+W+ SKT++ NTG
Sbjct: 180 PASNRRSPGFTDEEREGFTNLLAKGFTDTFRHIHGDMPERYTWWAQRSKTSKINNTG 236
>gi|301096360|ref|XP_002897277.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
gi|262107161|gb|EEY65213.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
Length = 362
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 135/242 (55%), Gaps = 26/242 (10%)
Query: 74 KIASWNVAGLRACVKKEG----LDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYK-T 128
KI +WNV GLRA +K++ Y+ +ED DIFCL ETK +L +++ P+Y+
Sbjct: 111 KIVAWNVNGLRAVLKRDESVHLRAYVAQEDPDIFCLSETKICRDELQ-KLEDFLPQYEHQ 169
Query: 129 YWLSSPKAGYAGVGLYTKVKPNKVTYGL---------------GTKNEHYGRNCNSNIVN 173
YW + K GYA ++TK KP V + G K++ GR
Sbjct: 170 YWSCAIKKGYASTAIFTKTKPLSVKDEIVVGDHDSKGVAKSANGGKDQE-GRFLALEFPK 228
Query: 174 TFYIRKNVPNAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ + VPNAG L+ LD R +WDK H + +++ KPVI GDLNV+H+ ID+ NP
Sbjct: 229 FWLVHTYVPNAGGKLERLDFRTTQWDKAMHREMKEMEKTKPVIWCGDLNVAHQEIDIHNP 288
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TN 291
N +SAGFT EER+SF +L+ GF D+FRHL+P T Y+Y+ Y R++N G +
Sbjct: 289 KGNHKSAGFTDEERESFGEILEDGFVDTFRHLHPD-TVEYSYFGY-RHNMRAKNKGWRLD 346
Query: 292 YF 293
YF
Sbjct: 347 YF 348
>gi|410622567|ref|ZP_11333400.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
gi|410157921|dbj|GAC28774.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
Length = 255
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 130/224 (58%), Gaps = 6/224 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
K+ SWNV G+RA +KK+ + + D+ CLQETK + Q+ E Y + S
Sbjct: 1 MKLVSWNVNGVRAAIKKDFFQSLASLECDVLCLQETKAQDDQVI-EALCDLKGYHVFTNS 59
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G + T+VKP VT +G + ++ GR + + + PN+G LK L
Sbjct: 60 AIKKGYSGTSIITRVKPIDVTRDIGIEEHDQEGRVLCAEFDAFYLVTVYTPNSGDSLKRL 119
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTIEERDSFS 250
R +WD F ++ +L+A KPV++ GDLNV+H+ ID+A P N +SAG+T +E D
Sbjct: 120 SYRTQWDADFLSYVKQLEALKPVVVCGDLNVAHRDIDIARPKPNYNKSAGYTQKEIDGID 179
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
SL+ G+ D+FRHL+P T Y++WSY + AR RN G +YF
Sbjct: 180 SLIAAGYVDTFRHLFPD-TVKYSWWSYRAG-ARERNVGWRLDYF 221
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 127/218 (58%), Gaps = 17/218 (7%)
Query: 67 LGEEPNF-KIASWNVAGLRACVKKEGLDYI---KKEDADIFCLQETKCHETQLPPEVKMK 122
L E+ F K+ SWNV GLRA +K EG + ++E+ D+ C QETK ++ K
Sbjct: 230 LAEDTKFVKLMSWNVNGLRALLKLEGFSAVELAQRENFDVLCFQETK---------LQAK 280
Query: 123 FPEYKTYWLSSPKAGYAGVGLYTKVKPNKVTYGLGTKN-EHYGRNCNSNIVNTFYIRKNV 181
E + S K GY+G + ++VKP V+YGLG + + GR + + + + V
Sbjct: 281 GYENSFWTCSHSKLGYSGTAIVSRVKPLSVSYGLGIADHDSEGRLVTAEFDSFYLLNAYV 340
Query: 182 PNAGAGLKTLDKRL-EWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTNTRSAG 240
PN+G GLK L R+ +WD ++ +L+ KPVIL GDLN +H+ ID+ NP N R+AG
Sbjct: 341 PNSGDGLKRLSYRVSQWDLSLSNYMKELEKSKPVILNGDLNCAHQEIDIYNPAGNRRNAG 400
Query: 241 FTIEERDSF-SSLLDKGFTDSFRHLYPKRTGAYTYWSY 277
FT EER SF ++ L +GF DSFR +P G YTYW Y
Sbjct: 401 FTDEERQSFETNFLSRGFVDSFRKQHPDVVG-YTYWGY 437
>gi|419799163|ref|ZP_14324529.1| exodeoxyribonuclease III [Streptococcus parasanguinis F0449]
gi|385698607|gb|EIG28958.1| exodeoxyribonuclease III [Streptococcus parasanguinis F0449]
Length = 275
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 134/236 (56%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + +E L + EDADI +QETK T+ E+
Sbjct: 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAEDADIIAIQETKLSAKGPTKKHLEIL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 61 EELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPVVTFPEIGAPSTMDLEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GLK L++R WD + ++L +LD +KPV+ GD NV+HK IDLANP
Sbjct: 121 HFFVTQVYTPNAGDGLKRLEERQVWDVKYAKYLAELDKQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER+ F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 ASNRRSPGFTDEEREGFTNLLAKGFTDTFRHLHGDVPERYTWWAQRSKTSKINNTG 236
>gi|337281640|ref|YP_004621111.1| exodeoxyribonuclease [Streptococcus parasanguinis ATCC 15912]
gi|335369233|gb|AEH55183.1| exodeoxyribonuclease [Streptococcus parasanguinis ATCC 15912]
Length = 282
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 134/236 (56%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + +E L + EDADI +QETK T+ E+
Sbjct: 8 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAEDADIIAIQETKLSAKGPTKKHLEIL 67
Query: 121 MK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 68 EELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPVVTFPEIGAPSTMDLEGRIITLEFD 127
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GLK L++R WD + ++L +LD +KPV+ GD NV+HK IDLANP
Sbjct: 128 HFFVTQVYTPNAGDGLKRLEERQVWDVKYAKYLAELDKQKPVLATGDYNVAHKEIDLANP 187
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER+ F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 188 ASNRRSPGFTDEEREGFTNLLAKGFTDTFRHLHGDVPERYTWWAQRSKTSKINNTG 243
>gi|407718604|ref|YP_006796009.1| exodeoxyribonuclease III [Leuconostoc carnosum JB16]
gi|407242360|gb|AFT82010.1| exodeoxyribonuclease III [Leuconostoc carnosum JB16]
Length = 272
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 124/233 (53%), Gaps = 17/233 (7%)
Query: 73 FKIASWNVAGLRACVKK---------EGLDYIKKEDADIFCLQETKCHETQL----PPEV 119
+ SWN+ + A V+ E L +I D+F +QETK T + +
Sbjct: 1 MQFISWNIDSINAAVEHKSARGEMTWETLTHIASRQPDVFAIQETKLKNTGMTKKQAEAI 60
Query: 120 KMKFPEYKTYWLSS-PKAGYAGVGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIVNTF 175
FP+Y+ YW SS ++GY+G + +++KP V Y G + GR N F
Sbjct: 61 ANLFPDYELYWRSSTARSGYSGTMILSRLKPISVDYPSIGAPGDMDQEGRIITLEFENYF 120
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN 235
PN+G+ L LD R WD + ++ LD +KPVI GD+NV+H+ IDL NP TN
Sbjct: 121 VSTVYTPNSGSSLVRLDDRGMWDNAYRAYIQSLDDQKPVIFSGDMNVAHEEIDLKNPKTN 180
Query: 236 TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
SAGFT +ER+ FS LL GFTD+ R P+ YT+W+ +SKT++ N+G
Sbjct: 181 RHSAGFTDQEREKFSQLLKAGFTDTLRFQNPEIPSIYTWWAQISKTSKINNSG 233
>gi|376316682|emb|CCG00067.1| exodeoxyribonuclease III [uncultured Flavobacteriia bacterium]
Length = 253
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 129/224 (57%), Gaps = 6/224 (2%)
Query: 73 FKIASWNVAGLRACVKKEGLDYIKKEDADIFCLQETKCHETQLPPEVKMKFPEYKTYWLS 132
KI S+NV G+RA +KK+ + + D D+ C+QETK + Q+ +K Y + S
Sbjct: 1 MKIVSFNVNGIRAIMKKDFHESLAMMDPDVLCIQETKAQDDQVAEALK-PINGYHIFSNS 59
Query: 133 SPKAGYAGVGLYTKVKPNKVTYGLGTK-NEHYGRNCNSNIVNTFYIRKNVPNAGAGLKTL 191
+ K GY+G + TK KP V+Y + + ++ GR + F + VPN+G+ LK L
Sbjct: 60 AVKKGYSGTAILTKEKPISVSYDINIEEHDTEGRVICAEFSAYFVVTVYVPNSGSALKRL 119
Query: 192 DKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN-TRSAGFTIEERDSFS 250
R WDK F +L L+ +KPVI+ GDLNV+H+ IDLANP N +SAG+ EE D
Sbjct: 120 TYRQTWDKAFLAYLKALEKKKPVIVCGDLNVAHRDIDLANPKPNYNKSAGYMQEEIDGID 179
Query: 251 SLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTGC-TNYF 293
+ L GF D+FRH P T Y++WSY + AR RN G +YF
Sbjct: 180 AYLSAGFVDTFRHFQPD-TQKYSWWSYRA-GARVRNVGWRIDYF 221
>gi|322386046|ref|ZP_08059685.1| exodeoxyribonuclease [Streptococcus cristatus ATCC 51100]
gi|417922375|ref|ZP_12565863.1| exodeoxyribonuclease III [Streptococcus cristatus ATCC 51100]
gi|321269890|gb|EFX52811.1| exodeoxyribonuclease [Streptococcus cristatus ATCC 51100]
gi|342832472|gb|EGU66767.1| exodeoxyribonuclease III [Streptococcus cristatus ATCC 51100]
Length = 275
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 132/236 (55%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEVK 120
K+ SWN+ L RA + + L ++ E+ADI +QETK T+ E+
Sbjct: 1 MKLISWNIDSLNAALTSDSARAQLSQAVLRTLQAENADIIAIQETKLSAKGPTKKHLEIL 60
Query: 121 MK-FPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP Y+ W SS + GYAG + LY K VT+ G + + GR
Sbjct: 61 EELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPIVTFPEIGAPSTMDVEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ F + PNAG GLK LD+R WD + E+L LD +KPV+ GD NV+HK IDLANP
Sbjct: 121 DFFVTQVYTPNAGDGLKRLDERQVWDVKYAEYLASLDEQKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N RS GFT EER F++LL KGFTD+FRHL+ YT+W+ SKT++ NTG
Sbjct: 181 ASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKINNTG 236
>gi|389856780|ref|YP_006359023.1| exodeoxyribonuclease [Streptococcus suis ST1]
gi|353740498|gb|AER21505.1| exodeoxyribonuclease [Streptococcus suis ST1]
Length = 275
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 131/236 (55%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV- 119
K+ SWN+ L RA + + +D + EDADI +QETK + T+ E+
Sbjct: 1 MKLISWNIDSLNAALTAESPRALLSRAVIDTLVSEDADIIAIQETKLSDKGPTKKHLEIL 60
Query: 120 KMKFPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG + LY +T+ G T + GR
Sbjct: 61 ESYFPGYANTWRSSVEPARKGYAGTLFLYKNHLSPTITFPEIGAPTTMDSEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ + + PNAG GLK L R WD + ++L KLD+ KPV+ GD NV+HK IDLANP
Sbjct: 121 DFYVTQVYTPNAGDGLKRLADRQIWDVQYADYLAKLDSHKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N +S GFT EER F++LL KGFTD+FRHL+ AYT+W+ S+T++ NTG
Sbjct: 181 ASNRQSPGFTDEERQGFTNLLAKGFTDTFRHLHGDVLNAYTWWAQRSRTSKINNTG 236
>gi|223932412|ref|ZP_03624414.1| exodeoxyribonuclease III Xth [Streptococcus suis 89/1591]
gi|330832647|ref|YP_004401472.1| exodeoxyribonuclease [Streptococcus suis ST3]
gi|386583909|ref|YP_006080312.1| exodeoxyribonuclease [Streptococcus suis D9]
gi|223898866|gb|EEF65225.1| exodeoxyribonuclease III Xth [Streptococcus suis 89/1591]
gi|329306870|gb|AEB81286.1| exodeoxyribonuclease [Streptococcus suis ST3]
gi|353736055|gb|AER17064.1| exodeoxyribonuclease [Streptococcus suis D9]
Length = 275
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 131/236 (55%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV- 119
K+ SWN+ L RA + + +D + EDADI +QETK + T+ E+
Sbjct: 1 MKLISWNIDSLNAALTAESPRALLSRAVIDTLVTEDADIIAIQETKLSDKGPTKKHLEIL 60
Query: 120 KMKFPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG + LY +T+ G T + GR
Sbjct: 61 ESYFPGYANTWRSSVEPARKGYAGTLFLYKNHLSPTITFPEIGAPTTMDSEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ + + PNAG GLK L R WD + ++L KLD+ KPV+ GD NV+HK IDLANP
Sbjct: 121 DFYVTQVYTPNAGDGLKRLADRQIWDVQYADYLAKLDSHKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N +S GFT EER F++LL KGFTD+FRHL+ AYT+W+ S+T++ NTG
Sbjct: 181 ASNRQSPGFTDEERQGFTNLLAKGFTDTFRHLHGDVLNAYTWWAQRSRTSKINNTG 236
>gi|116618622|ref|YP_818993.1| exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
gi|116097469|gb|ABJ62620.1| Exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
Length = 272
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 126/233 (54%), Gaps = 17/233 (7%)
Query: 73 FKIASWNVAGLRACVKKEG---------LDYIKKEDADIFCLQETKCHETQL----PPEV 119
K SWN+ + A V+ + L+ I D+F +QETK T L +
Sbjct: 1 MKFISWNIDSINAAVEHKSVRGEMTWSTLNEIATIRPDVFAIQETKLKSTGLTKKQATAI 60
Query: 120 KMKFPEYKTYWLSS-PKAGYAGVGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIVNTF 175
FPEY Y SS ++GY+G + +KV+P +V Y G + GR F
Sbjct: 61 AELFPEYHLYVNSSTARSGYSGTMVLSKVEPTQVEYPTIGAPGSMDLEGRIITLEFPTFF 120
Query: 176 YIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANPTTN 235
PN+G+ L L +R EWD + E++ LDA KPVI GD+NV+H+ IDL NP N
Sbjct: 121 LSTVYTPNSGSSLIRLPERGEWDDKYREYIKTLDATKPVIFSGDMNVAHQEIDLKNPKPN 180
Query: 236 TRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
SAGFT +ER+ FS+LLD GFTD+FR L P YT+W+ +SKT++ N+G
Sbjct: 181 RHSAGFTDQEREKFSALLDAGFTDTFRSLNPDTPSVYTWWAQISKTSKINNSG 233
>gi|253751487|ref|YP_003024628.1| exodeoxyribonuclease [Streptococcus suis SC84]
gi|253753388|ref|YP_003026529.1| exodeoxyribonuclease [Streptococcus suis P1/7]
gi|253755783|ref|YP_003028923.1| exodeoxyribonuclease [Streptococcus suis BM407]
gi|386577656|ref|YP_006074062.1| exodeoxyribonuclease III [Streptococcus suis GZ1]
gi|386579713|ref|YP_006076118.1| exodeoxyribonuclease [Streptococcus suis JS14]
gi|386581661|ref|YP_006078065.1| exodeoxyribonuclease [Streptococcus suis SS12]
gi|386586274|ref|YP_006082676.1| exodeoxyribonuclease [Streptococcus suis D12]
gi|386587894|ref|YP_006084295.1| exodeoxyribonuclease [Streptococcus suis A7]
gi|403061298|ref|YP_006649514.1| exodeoxyribonuclease [Streptococcus suis S735]
gi|251815776|emb|CAZ51378.1| exodeoxyribonuclease [Streptococcus suis SC84]
gi|251818247|emb|CAZ56055.1| exodeoxyribonuclease [Streptococcus suis BM407]
gi|251819634|emb|CAR45379.1| exodeoxyribonuclease [Streptococcus suis P1/7]
gi|292558119|gb|ADE31120.1| exodeoxyribonuclease III [Streptococcus suis GZ1]
gi|319757905|gb|ADV69847.1| exodeoxyribonuclease [Streptococcus suis JS14]
gi|353733807|gb|AER14817.1| exodeoxyribonuclease [Streptococcus suis SS12]
gi|353738420|gb|AER19428.1| exodeoxyribonuclease [Streptococcus suis D12]
gi|354985055|gb|AER43953.1| exodeoxyribonuclease [Streptococcus suis A7]
gi|402808624|gb|AFR00116.1| exodeoxyribonuclease [Streptococcus suis S735]
gi|451937292|gb|AGF87595.1| putative endonuclease [Streptococcus phage phiD12]
Length = 275
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 131/236 (55%), Gaps = 20/236 (8%)
Query: 73 FKIASWNVAGL---------RACVKKEGLDYIKKEDADIFCLQETKCHE---TQLPPEV- 119
K+ SWN+ L RA + + +D + EDADI +QETK + T+ E+
Sbjct: 1 MKLISWNIDSLNAALTAESPRALLSRAVIDTLVTEDADIIAIQETKLSDKGPTKKHLEIL 60
Query: 120 KMKFPEYKTYWLSS---PKAGYAG-VGLYTKVKPNKVTY---GLGTKNEHYGRNCNSNIV 172
+ FP Y W SS + GYAG + LY +T+ G T + GR
Sbjct: 61 ESYFPGYANTWRSSVEPARKGYAGTLFLYKNHLTPTITFPEIGAPTTMDSEGRIITLEFD 120
Query: 173 NTFYIRKNVPNAGAGLKTLDKRLEWDKLFHEHLVKLDAEKPVILIGDLNVSHKPIDLANP 232
+ + + PNAG GLK L R WD + ++L KLD+ KPV+ GD NV+HK IDLANP
Sbjct: 121 DFYVTQVYTPNAGDGLKRLADRQIWDVQYADYLAKLDSHKPVLATGDYNVAHKEIDLANP 180
Query: 233 TTNTRSAGFTIEERDSFSSLLDKGFTDSFRHLYPKRTGAYTYWSYMSKTARSRNTG 288
+N +S GFT EER F++LL KGFTD+FRHL+ AYT+W+ S+T++ NTG
Sbjct: 181 ASNRQSPGFTDEERQGFTNLLAKGFTDTFRHLHGDVLNAYTWWAQRSRTSKINNTG 236
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,855,352,966
Number of Sequences: 23463169
Number of extensions: 210826958
Number of successful extensions: 523755
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3080
Number of HSP's successfully gapped in prelim test: 2175
Number of HSP's that attempted gapping in prelim test: 512357
Number of HSP's gapped (non-prelim): 6252
length of query: 295
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 154
effective length of database: 9,050,888,538
effective search space: 1393836834852
effective search space used: 1393836834852
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)